47 results on '"Cali JJ"'
Search Results
2. A novel in vivo approach to monitoring Cyp3a induction and inhibition by bioluminescent urinalysis.
- Author
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Cali JJ, Ma D, Bohm K, and Klaubert DH
- Abstract
Background: Adverse drug-drug interactions (DDI) may occur when one drug accelerates or slows a second drug's metabolism by, respectively, inducing or inhibiting a cytochrome P450 (CYP) that metabolizes that second drug. We developed an in vivo method employing urinalysis to complement in vitro CYP induction and inhibition measurements widely used to predict DDIs., Research Design and Methods: Focusing on Cyp3a enzymes, the major mammalian drug metabolizers, we applied luciferin-IPA, a selective Cyp3a probe substrate to mice after Cyp3a inducers and inhibitor treatments. Cyp3a converts the probe to a metabolite that is eliminated in urine and drives light output when mixed with a luciferase reaction mixture. We hypothesized that urine from an initial renal elimination phase would, respectively, drive elevated or reduced light output as a reflection of Cyp3a induction or inhibition., Results: Luciferase mixed with urine from Cyp3a-induced mice showed enhanced signals, while a Cyp3a inhibitor diminished induced and basal signals versus vehicle., Conclusions: A Cyp3a-selective luminogenic probe substrate enables rapid urinalysis-based testing for detecting Cyp3a induction and inhibition and predicting Cyp3a-dependent DDIs. The study serves as a proof of concept for using caged luciferins for in vivo enzyme activity tests with a readily accessible sample type.
- Published
- 2024
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3. Development and validation of CYP26A1 inhibition assay for high-throughput screening.
- Author
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Sakamuru S, Ma D, Pierro JD, Baker NC, Kleinstreuer N, Cali JJ, Knudsen TB, and Xia M
- Subjects
- Humans, Tretinoin pharmacology, Tretinoin metabolism, Cytochrome P-450 Enzyme Inhibitors pharmacology, Reproducibility of Results, High-Throughput Screening Assays methods, Retinoic Acid 4-Hydroxylase metabolism, Retinoic Acid 4-Hydroxylase genetics
- Abstract
All-trans retinoic acid (atRA) is an endogenous ligand of the retinoic acid receptors, which heterodimerize with retinoid X receptors. AtRA is generated in tissues from vitamin A (retinol) metabolism to form a paracrine signal and is locally degraded by cytochrome P450 family 26 (CYP26) enzymes. The CYP26 family consists of three subtypes: A1, B1, and C1, which are differentially expressed during development. This study aims to develop and validate a high throughput screening assay to identify CYP26A1 inhibitors in a cell-free system using a luminescent P450-Glo assay technology. The assay performed well with a signal to background ratio of 25.7, a coefficient of variation of 8.9%, and a Z-factor of 0.7. To validate the assay, we tested a subset of 39 compounds that included known CYP26 inhibitors and retinoids, as well as positive and negative control compounds selected from the literature and/or the ToxCast/Tox21 portfolio. Known CYP26A1 inhibitors were confirmed, and predicted CYP26A1 inhibitors, such as chlorothalonil, prochloraz, and SSR126768, were identified, demonstrating the reliability and robustness of the assay. Given the general importance of atRA as a morphogenetic signal and the localized expression of Cyp26a1 in embryonic tissues, a validated CYP26A1 assay has important implications for evaluating the potential developmental toxicity of chemicals., (Published 2024. This article is a U.S. Government work and is in the public domain in the USA. Biotechnology Journal published by Wiley‐VCH GmbH.)
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- 2024
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4. Interrogating direct NLRP3 engagement and functional inflammasome inhibition using cellular assays.
- Author
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Teske KA, Corona C, Wilkinson J, Mamott D, Good DA, Zambrano D, Lazar DF, Cali JJ, Robers MB, and O'Brien MA
- Subjects
- Humans, Cytokines metabolism, Interleukin-1beta metabolism, Inflammasomes metabolism, NLR Family, Pyrin Domain-Containing 3 Protein metabolism
- Abstract
As a key regulator of the innate immune system, the NLRP3 inflammasome responds to a variety of environmental insults through activation of caspase-1 and release of the proinflammatory cytokines IL-1β and IL-18. Aberrant NLRP3 inflammasome function is implicated in numerous inflammatory diseases, spurring drug discovery efforts at NLRP3 as a therapeutic target. A diverse array of small molecules is undergoing preclinical/clinical evaluation with a reported mode of action involving direct modulation of the NLRP3 pathway. However, for a subset of these ligands the functional link between live-cell target engagement and pathway inhibition has yet to be fully established. Herein we present a cohort of mechanistic assays to both query direct NLRP3 engagement in cells, and functionally interrogate different nodes of NLRP3 pathway activity. This system enabled the stratification of potency for five confirmed NLRP3 inhibitors, and identification of two reported NLRP3 inhibitors that failed to demonstrate direct pathway antagonism., Competing Interests: Declaration of interests All authors are employees of Promega Corporation. Promega Corporation holds patents surrounding NanoBRET technology, NanoBiT technology, and homogeneous Caspase Assay Technology., (Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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5. Monitoring phosphorylation and acetylation of CRISPR-mediated HiBiT-tagged endogenous proteins.
- Author
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Alves J, Schwinn M, Machleidt T, Goueli SA, Cali JJ, and Zegzouti H
- Subjects
- Phosphorylation, Acetylation, Peptides, Protein Processing, Post-Translational, Chromatin
- Abstract
Intracellular pathways transduce signals through changes in post-translational modifications (PTMs) of effector proteins. Among the approaches used to monitor PTM changes are immunoassays and overexpression of recombinant reporter genes. Genome editing by CRISPR/Cas9 provides a new means to monitor PTM changes by inserting reporters onto target endogenous genes while preserving native biology. Ideally, the reporter should be small in order not to interfere with the processes mediated by the target while sensitive enough to detect tightly expressed proteins. HiBiT is a 1.3 kDa reporter peptide capable of generating bioluminescence through complementation with LgBiT, an 18 kDa subunit derived from NanoLuc. Using HiBiT CRISPR/Cas9-modified cell lines in combination with fluorescent antibodies, we developed a HiBiT-BRET immunoassay (a.k.a. Immuno-BRET). This is a homogeneous immunoassay capable of monitoring post-translational modifications on diverse protein targets. Its usefulness was demonstrated for the detection of phosphorylation of multiple signaling pathway targets (EGFR, STAT3, MAPK8 and c-MET), as well as chromatin containing histone H3 acetylation on lysine 9 and 27. These results demonstrate the ability to efficiently monitor endogenous biological processes modulated by post-translational modifications using a small bioluminescent peptide tag and fluorescent antibodies, providing sensitive quantitation of the response dynamics to multiple stimuli., (© 2024. The Author(s).)
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- 2024
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6. A direct capture method for purification and detection of viral nucleic acid enables epidemiological surveillance of SARS-CoV-2.
- Author
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Mondal S, Feirer N, Brockman M, Preston MA, Teter SJ, Ma D, Goueli SA, Moorji S, Saul B, and Cali JJ
- Subjects
- Humans, RNA, Viral, SARS-CoV-2, COVID-19, Nucleic Acids
- Abstract
Studies have demonstrated that SARS-CoV-2 RNA can be detected in the feces of infected individuals. This finding spurred investigation into using wastewater-based epidemiology (WBE) to monitor SARS-CoV-2 RNA and track the appearance and spread of COVID-19 in communities. SARS-CoV-2 is present at low levels in wastewater, making sample concentration a prerequisite for sensitive detection and utility in WBE. Whereas common methods for isolating viral genetic material are biased toward intact virus isolation, it is likely that a relatively low percentage of the total SARS-CoV-2 RNA genome in wastewater is contained within intact virions. Therefore, we hypothesized that a direct unbiased total nucleic acid(TNA) extraction method could overcome the cumbersome protocols, variability and low recovery rates associated with the former methods. This led to development of a simple, rapid, and modular alternative to existing purification methods. In an initial concentration step, chaotropic agents are added to raw sewage allowing binding of nucleic acid from free nucleoprotein complexes, partially intact, and intact virions to a silica matrix. The eluted nucleic acid is then purified using manual or semi-automated methods. RT-qPCR enzyme mixes were formulated that demonstrate substantial inhibitor resistance. In addition, multiplexed probe-based RT-qPCR assays detecting the N1, N2 (nucleocapsid) and E (envelope) gene fragments of SARS-CoV-2 were developed. The RT-qPCR assays also contain primers and probes to detect Pepper Mild Mottle Virus (PMMoV), a fecal indicator RNA virus present in wastewater, and an exogenous control RNA to measure effects of RT-qPCR inhibitors. Using this workflow, we monitored wastewater samples from three wastewater treatment plants (WWTP) in Dane County, Wisconsin. We also successfully sequenced a subset of samples to ensure compatibility with a SARS-CoV-2 amplicon panel and demonstrated the potential for SARS-CoV-2 variant detection. Data obtained here underscore the potential for wastewater surveillance of SARS-CoV-2 and other infectious agents in communities., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: All authors are employees of Promega Corporation., (Copyright © 2021 Promega Corporation. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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7. Luminogenic D-Luciferin Derivatives as OATP1B1 and 1B3 Substrates in No-wash Assays.
- Author
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Ma D, Wang H, Ugo T, Mustafa D, Zhou W, and Cali JJ
- Subjects
- Biological Transport physiology, Drug Interactions, HEK293 Cells, Humans, Liver-Specific Organic Anion Transporter 1 metabolism, Solute Carrier Organic Anion Transporter Family Member 1B3 metabolism, Luciferins, Organic Anion Transporters metabolism
- Abstract
The human hepatic organic ion transporting polypeptides OATP1B1 and -1B3 are uptake transporters that influence the disposition of several small molecule drugs and perpetrate certain adverse drug-drug interactions. To predict these in vivo effects, in vitro systems are used to screen new drug entities as potential transporter substrates or inhibitors. To simplify such studies, we synthesized luminogenic derivatives of the OATP1B1 and -1B3 substrate D-luciferin to test as probe substrates in a rapid, no-wash optical approach for substrate and inhibitor identification and characterization. Each derivative is a pro-luciferin containing a self-immolating trimethyl lock quinone linker that is sensitive to intracellular reducing environments that cause the release of free luciferin in proportion to the amount of probe taken up by the transporter. A subsequent luciferin-limited luciferase reaction produces light in proportion to transporter activity. We tested the derivatives in HEK293 cells that overexpress OATP1B1 or OATP1B3 by transient transfection or viral transduction. Derivatives were identified that showed OATP-dependent uptake that was time and concentration dependent, saturable and sensitive to inhibition by known OATP1B1 and -1B3 substrates and inhibitors. These luminogenic transporter probes enabled an add-only multi-well plate protocol suitable for automation and high throughput screening., (© 2021 Promega Corporation. Photochemistry and Photobiology published by Wiley Periodicals LLC on behalf of American Society for Photobiology.)
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- 2021
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8. A live-cell assay for the real-time assessment of extracellular ATP levels.
- Author
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Niles AL, Cali JJ, and Lazar DF
- Subjects
- Humans, Time Factors, Tumor Cells, Cultured, Adenosine Triphosphate analysis
- Abstract
Extracellular ATP (eATP) is a potent damage associated molecular pattern (DAMP) molecule known to exert profound effects on the innate and adaptive immune responses. As such, it has become an important biomarker for studying means to pro-actively modulate inflammatory processes. Unfortunately, traditional methodologies employed for measuring eATP require cumbersome supernatant sampling, onerous time courses, or unnecessary duplication of effort. Here we describe a new reagent that is tolerable to test cells in extended exposures and enables a fully homogeneous assay method for real-time determinations of extracellular ATP levels. The reagent is introduced into assay plates containing cells at the time of stimulus introduction. The real-time feature of the format allows for sensitive, continuous accounting of eATP levels in the test model over at least 24 h. This work details our efforts to create and characterize this new reagent and to validate utility by demonstrating its use with multiple cell lines and chemically diverse eATP induction stimuli., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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9. Time- and Dose-Dependent Toxicity Studies in 3D Cultures Using a Luminescent Lactate Dehydrogenase Assay.
- Author
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Karassina N, Hofsteen P, Cali JJ, and Vidugiriene J
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- Dose-Response Relationship, Drug, Humans, Indicators and Reagents pharmacology, Neoplasms drug therapy, Neoplasms metabolism, Spheroids, Cellular drug effects, Spheroids, Cellular metabolism, Time Factors, Tumor Cells, Cultured, Antineoplastic Agents pharmacology, Digitonin pharmacology, Drug Screening Assays, Antitumor methods, L-Lactate Dehydrogenase metabolism, Luminescent Measurements methods, Neoplasms pathology, Spheroids, Cellular pathology, Toxicity Tests methods
- Abstract
Three-dimensional (3D) in vitro systems closely resemble tissue microenvironments and provide predictive models for studying cytotoxic drug responses. The ability to capture the kinetic profiles of such responses in a dynamic and noninvasive way can further advance the utility of 3D cell cultures. Here, we describe the use of a luminescent lactate dehydrogenase (LDH) toxicity assay for monitoring time- and dose-dependent effects of drug treatment in 3D cancer spheroids. HCT116 spheroids formed in 96-well ultralow attachment plates were treated with increasing drug concentrations. Medium samples were collected at different timepoints, frozen, stored, and analyzed at the end of experiments using the luminescent LDH-Glo™ Assay. High assay sensitivity and low volume sampling enabled drug-induced toxicity profiling in a time- and dose-dependent manner.
- Published
- 2021
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10. A Luminescence Assay to Quantify Cell Viability in Real Time.
- Author
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Hofsteen P, Karassina N, Cali JJ, and Vidugiriene J
- Subjects
- Breast Neoplasms metabolism, Female, Humans, Tumor Cells, Cultured, Antibody-Dependent Cell Cytotoxicity, Apoptosis, Biological Assay methods, Breast Neoplasms pathology, Drug Screening Assays, Antitumor methods, Luminescent Measurements methods
- Abstract
Comprehensive understanding of cellular responses to changes in the cellular environment or by drug treatment requires time-dependent analysis ranging from hours to several days. Here, we describe a sensitive, nonlytic live-cell assay that allows continuous or 'real-time' monitoring of cell viability, growth, and cytotoxicity over an extended period of time. We illustrate the use of the assay for small drug molecule and antibody-dependent cytotoxicity studies using cancer cells in 384-well plates. We show that the ability to measure changes in live cells over time provides instantaneous information on the biological status of the cells, information about the mode of action of the drug, and offers an added advantage of preserving the cells for multiplexing with downstream applications.
- Published
- 2021
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11. Evaluation of Luminogenic Substrates as Probe Substrates for Bacterial Cytochrome P450 Enzymes: Application to Mycobacterium tuberculosis .
- Author
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Ortega Ugalde S, Ma D, Cali JJ, and Commandeur JNM
- Subjects
- Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System isolation & purification, Enzyme Activation, High-Throughput Screening Assays, Humans, Luciferases genetics, Luciferases metabolism, Mycobacterium tuberculosis genetics, Oxidation-Reduction, Reproducibility of Results, Substrate Specificity, Cytochrome P-450 Enzyme System metabolism, Enzyme Assays methods, Luminescent Measurements methods, Mycobacterium tuberculosis enzymology
- Abstract
Several cytochrome P450 enzymes (CYPs) encoded in the genome of Mycobacterium tuberculosis (Mtb) are considered potential new drug targets due to the essential roles they play in bacterial viability and in the establishment of chronic intracellular infection. Identification of inhibitors of Mtb CYPs at present is conducted by ultraviolet-visible (UV-vis) optical titration experiments or by metabolism studies using endogenous substrates, such as cholesterol and lanosterol. The first technique requires high enzyme concentrations and volumes, while analysis of steroid hydroxylation is dependent on low-throughput analytical methods. Luciferin-based luminogenic substrates have proven to be very sensitive substrates for the high-throughput profiling of inhibitors of human CYPs. In the present study, 17 pro-luciferins were evaluated as substrates for Mtb CYP121A1, CYP124A1, CYP125A1, CYP130A1, and CYP142A1. Luciferin-BE was identified as an excellent probe substrate for CYP130A1, resulting in a high luminescence yield after addition of luciferase and adenosine triphosphate (ATP). Its applicability for high-throughput screening was supported by a high Z'-factor and high signal-to-background ratio. Using this substrate, the inhibitory properties of a selection of known inhibitors could be characterized using significantly less protein concentration when compared to UV-vis optical titration experiments. Although several luminogenic substrates were also identified for CYP121A1, CYP124A1, CYP125A1, and CYP142A1, their relatively low yield of luminescence and low signal-to-background ratios make them less suitable for high-throughput screening since high enzyme concentrations will be needed. Further structural optimization of luminogenic substrates will be necessary to obtain more sensitive probe substrates for these Mtb CYPs.
- Published
- 2019
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12. A real-time, bioluminescent annexin V assay for the assessment of apoptosis.
- Author
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Kupcho K, Shultz J, Hurst R, Hartnett J, Zhou W, Machleidt T, Grailer J, Worzella T, Riss T, Lazar D, Cali JJ, and Niles A
- Subjects
- A549 Cells, Annexin A5 metabolism, Cell Death, Cell Line, Tumor, Computer Systems, Flow Cytometry methods, HeLa Cells, Hep G2 Cells, Humans, K562 Cells, Molecular Imaging methods, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Annexin A5 chemistry, Apoptosis, Luminescent Measurements methods
- Abstract
Apoptosis is an important and necessary cell death program which promotes homeostasis and organismal survival. When dysregulated, however, it can lead to a myriad of pathologies from neurodegenerative diseases to cancer. Apoptosis is therefore the subject of intense study aimed at dissecting its pathways and molecular mechanisms. Although many assay methods exist for confirming whether an apoptotic response has occurred in vitro, most methods are destructive and involve laborious operator effort or specialized instrumentation. Here we describe a real-time, no-wash, microplate method which utilizes recombinant annexin V fusion proteins containing evolved binary subunits of NanoBiT™ luciferase. The fusion proteins, a time-released enzymatic substrate, a necrosis detection dye and exogenous calcium ions are delivered via an optimized and physiologically inert reagent directly to cells in culture at the time of treatment or dosing. Luminescent signals proportional to phosphatidylserine (PS) exposure and fluorescent signals generated as a result of loss of membrane integrity are then collected using a standard multimode plate reader at scheduled intervals over the exposure. The resulting luminescent and fluorescent data are then used to define the kinetics and magnitude of an apoptotic response. This study details our efforts to develop, characterize, and demonstrate the features of the assay by providing relevant examples from diverse cell models for programmed cell death.
- Published
- 2019
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13. Cell-based, bioluminescent assay for monitoring the interaction between PCSK9 and the LDL receptor.
- Author
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Duellman SJ, Machleidt T, Cali JJ, and Vidugiriene J
- Subjects
- Amino Acid Sequence, HEK293 Cells, High-Throughput Screening Assays, Humans, Protein Binding, Receptors, LDL chemistry, Luminescent Measurements, Proprotein Convertase 9 metabolism, Receptors, LDL metabolism
- Abstract
Monitoring the expression of cell-surface receptors, their interaction with extracellular ligands, and their fate upon ligand binding is important for understanding receptor function and developing new therapies. We describe a cell-based method that utilizes bioluminescent protein complementation technology to interrogate binding of a cellular receptor with its extracellular protein ligand, specifically LDL receptor (LDLR) and proprotein convertase subtilisin/kexin type 9 (PCSK9). Purified, full-length tagged PCSK9 is added to assay wells containing cells that stably express LDLR with an extracellular complementary tag. When the tagged PCSK9 binds the receptor, a bright luminescence signal is generated. The interaction is detected at the cell membrane with add-and-read simplicity, no wash steps, and flexibility, allowing data to be collected in endpoint format, kinetically, or with bioluminescent imaging. The assay is flexible, is rapid, and reports accurate biology. It is amenable to 96-well and 384-well formats, and the robustness allows for screening of new drug candidates ( Z ' = 0.83). The assay reports correct potencies for antibody titrations across a 50%-150% potency range and detects potency changes due to heat stress, suggesting that it may be useful during drug development. This assay technology can be broadly applied when studying other receptors with their extracellular ligands, whether protein or small-molecule binding partners., (Copyright © 2017 by the American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2017
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14. Bioluminescent Assays for Glucose and Glutamine Metabolism: High-Throughput Screening for Changes in Extracellular and Intracellular Metabolites.
- Author
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Leippe D, Sobol M, Vidugiris G, Cali JJ, and Vidugiriene J
- Subjects
- Cell Line, Tumor, Female, Glucose metabolism, Glutamic Acid metabolism, Glutamine metabolism, High-Throughput Screening Assays, Humans, Lactic Acid metabolism, Ovary metabolism, Ovary pathology, Sensitivity and Specificity, Glucose analysis, Glutamic Acid analysis, Glutamine analysis, Glycolysis, Lactic Acid analysis, Luminescent Measurements
- Abstract
Cancer cell metabolism is a complex, dynamic network of regulated pathways. Interrogation of this network would benefit from rapid, sensitive techniques that are adaptable to high-throughput formats, facilitating novel compound screening. This requires assays that have minimal sample preparation and are adaptable to lower-volume 384-well formats and automation. Here we describe bioluminescent glucose, lactate, glutamine, and glutamate detection assays that are well suited for high-throughput analysis of two major metabolic pathways in cancer cells: glycolysis and glutaminolysis. The sensitivity (1-5 pmol/sample), broad linear range (0.1-100 µM), and wide dynamic range (>100-fold) are advantageous for measuring both extracellular and intracellular metabolites. Importantly, the assays incorporate rapid inactivation of endogenous enzymes, eliminating deproteinization steps required by other methods. Using ovarian cancer cell lines as a model system, the assays were used to monitor changes in glucose and glutamine consumption and lactate and glutamate secretion over time. Homogeneous formats of the lactate and glutamate assays were robust (Z' = 0.6-0.9) and could be multiplexed with a real-time viability assay to generate internally controlled data. Screening a small-compound library with these assays resulted in the identification of both inhibitors and activators of lactate and glutamate production.
- Published
- 2017
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15. A bioluminescent assay for measuring glucose uptake.
- Author
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Valley MP, Karassina N, Aoyama N, Carlson C, Cali JJ, and Vidugiriene J
- Subjects
- Animals, Cells, Cultured, Humans, Mice, Glucose metabolism, Luminescent Measurements
- Abstract
Identifying activators and inhibitors of glucose uptake is critical for both diabetes management and anticancer therapy. To facilitate such studies, easy-to-use nonradioactive assays are desired. Here we describe a bioluminescent glucose uptake assay for measuring glucose transport in cells. The assay is based on the uptake of 2-deoxyglucose and the enzymatic detection of the 2-deoxyglucose-6-phosphate that accumulates. Uptake can be measured from a variety of cell types, it can be inhibited by known glucose transporter inhibitors, and the bioluminescent assay yields similar results when compared with the radioactive method. With HCT 116 cells, glucose uptake can be detected in as little as 5000 cells and remains linear up to 50,000 cells with signal-to-background values ranging from 5 to 45. The assay can be used to screen for glucose transporter inhibitors, or by multiplexing with viability readouts, changes in glucose uptake can be differentiated from overall effects on cell health. The assay also can provide a relevant end point for measuring insulin sensitivity. With adipocytes and myotubes, insulin-dependent increases in glucose uptake have been measured with 10- and 2-fold assay windows, respectively. Significant assay signals of 2-fold or more have also been measured with human induced pluripotent stem cell (iPSC)-derived cardiomyocytes and skeletal myoblasts., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
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16. Novel No-Wash Luminogenic Probes for the Detection of Transporter Uptake Activity.
- Author
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Mustafa D, Ma D, Zhou W, Meisenheimer P, and Cali JJ
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- Benzothiazoles chemistry, Biological Transport drug effects, Chemistry Techniques, Synthetic, Firefly Luciferin analogs & derivatives, Firefly Luciferin chemistry, Firefly Luciferin pharmacokinetics, Fluorescein chemistry, Fluoresceins chemistry, Fluoresceins pharmacokinetics, HEK293 Cells, Humans, Kinetics, Liver-Specific Organic Anion Transporter 1 analysis, Liver-Specific Organic Anion Transporter 1 genetics, Luminescent Measurements methods, Molecular Probes chemical synthesis, Molecular Probes pharmacokinetics, Nitriles chemistry, Organic Anion Transporters, Sodium-Independent analysis, Organic Anion Transporters, Sodium-Independent genetics, Solute Carrier Organic Anion Transporter Family Member 1B3, Liver-Specific Organic Anion Transporter 1 metabolism, Luminescent Agents chemistry, Molecular Imaging methods, Molecular Probes chemistry, Organic Anion Transporters, Sodium-Independent metabolism
- Abstract
Luminogenic probes were designed and synthesized for the detection of uptake transporter activity in a lytic cell-based assay. These probes rely on a self-cleavable trimethyl lock quinone-cyanobenzothiazole (TMQ-CNBT) or trimethyl lock quinone-luciferin (TMQ-Luc) linked to the anion transporter substrate fluorescein. Upon cellular transport, the TMQ is reduced by viable cells, resulting in the facile intramolecular lactonization and rapid release of the bioluminescent reporter molecule. The uptake transporter activity can then be detected without removing and washing off the extracellular substrates. Six probes were tested with OATP1B1*1a and OATP1B3 overexpressing HEK293 cells, and all compounds showed up to 10.2-fold enhancement in uptake when compared to control cells. Uptake of TMQ-luciferin compounds 2, 4, and 6 increased linearly over time up to 30 min at a concentration ranging from 40 nM to 20 μM. The apparent Km values obtained at different time intervals up to 30 min were nearly identical for a given compound, which validates the 30 min window as appropriate for uptake transporter assays. The average apparent Km values ranged from 0.3 to 0.8 μM and 0.2 to 1.3 μM for OATP1B1*1a and OATP1B3, respectively, indicating good affinities to these anion transporters. Furthermore, uptake of compound 2 was inhibited by two inhibitors of OATP1B1*1a and OATP1B3: rifampicin and ritonavir. The preliminary results obtained from compound 2 exhibited a time-dependent, saturatable, and inhibitable nature of uptake, indicating the feasibility of using the probe for the detection of a transporter-mediated process. This add-and-read homogeneous assay may provide a convenient, rapid, and facile way to detect changes in transporter activity in a high-throughput format, and this assay design strategy could create a new platform for a general cell uptake assay for biomaterials in the future.
- Published
- 2016
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17. Bioluminescent, Nonlytic, Real-Time Cell Viability Assay and Use in Inhibitor Screening.
- Author
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Duellman SJ, Zhou W, Meisenheimer P, Vidugiris G, Cali JJ, Gautam P, Wennerberg K, and Vidugiriene J
- Subjects
- Apoptosis drug effects, Apoptosis physiology, Cell Survival physiology, Dose-Response Relationship, Drug, Drug Evaluation, Preclinical methods, Humans, K562 Cells, Small Molecule Libraries analysis, Small Molecule Libraries pharmacology, Antineoplastic Agents analysis, Antineoplastic Agents pharmacology, Cell Survival drug effects, Computer Systems, Luminescent Measurements methods
- Abstract
Real-time continuous monitoring of cellular processes offers distinct advantages over traditional endpoint assays. A comprehensive representation of the changes occurring in live cells over the entire length of an experiment provides information about the biological status of the cell and informs decisions about the timing of treatments or the use of other functional endpoint assays. We describe a homogeneous, nonlytic, bioluminescent assay that measures cell viability in real time. This time-dependent measurement allowed us to monitor cell health for 72 h from the same test samples, distinguish differential cell growth, and investigate drug mechanism of action by analyzing time- and dose-dependent drug effects. The real-time measurements also allowed us to detect cell death immediately (>75% signal decrease within 15 min of digitonin addition), analyze drug potency versus efficacy, and identify cytostatic versus toxic drug effects. We screened an oncology compound library (Z' = 0.7) and identified compounds with varying activity at different time points (1.6% of the library showed activity within 3 h, whereas 35.4% showed a response by 47 h). The assay compared well with orthogonal endpoint cell viability assays and additionally provided data at multiple time points and the opportunity to multiplex assays on the same cells. To test the advantage of time-dependent measurements to direct optimal timing of downstream applications, we used the real-time cell viability assay to determine the ideal time to measure caspase activity by monitoring the onset of cell death and multiplexing a luminescent caspase activation assay on the same test samples.
- Published
- 2015
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18. Altered cytotoxicity of ROS-inducing compounds by sodium pyruvate in cell culture medium depends on the location of ROS generation.
- Author
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Kelts JL, Cali JJ, Duellman SJ, and Shultz J
- Abstract
Induction of oxidative stress by drugs and other xenobiotics is an important mechanism of cytotoxicity. However, in vitro studies on the relationship between oxidative stress and cytotoxicity in cultured cells is frequently complicated by the fact that cell culture medium components affect reactive oxygen species (ROS) exposures in ways that vary with the mode of ROS production. The objectives of this study were to first determine the mode of ROS induction by certain model compounds when they are applied to cultured cells, and then to determine how ROS induction and cytotoxicity were affected by the ROS-quenching medium component pyruvate. Three compounds, eseroline, benserazide, and pyrogallol induced H2O2 in cell culture media independent of cells. However, another compound, menadione, induced H2O2 in a manner largely dependent on the MDA-MB-231 breast cancer cells used in this study, which is consistent with its known mechanism of inducing ROS through intracellular redox cycling. 1 mM pyruvate, as well as catalase, reduced the H2O2 in culture wells with each ROS inducer tested but it only reduced the cytotoxicity of cell-independent inducers. It reduced the cytotoxicity of benserazide and pyrogallol >10-fold and of eseroline about 2.5-fold, but had no effect on menadione cytotoxicity. From this data, it was concluded that depending on the mechanism of ROS induction, whether intra- or extracellular, a ROS-quenching medium component such as pyruvate will differentially affect the net ROS-induction and cytotoxicity of a test compound.
- Published
- 2015
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19. Bioluminescent cell-based NAD(P)/NAD(P)H assays for rapid dinucleotide measurement and inhibitor screening.
- Author
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Vidugiriene J, Leippe D, Sobol M, Vidugiris G, Zhou W, Meisenheimer P, Gautam P, Wennerberg K, and Cali JJ
- Subjects
- Acrylamides analysis, Acrylamides pharmacology, Hep G2 Cells, Humans, Jurkat Cells, Luminescent Measurements standards, Oxidation-Reduction, Piperidines analysis, Piperidines pharmacology, Luminescent Measurements methods, NADP analysis, NADP antagonists & inhibitors
- Abstract
Abstract The central role of nicotinamide adenine dinucleotides in cellular energy metabolism and signaling makes them important nodes that link the metabolic state of cells with energy homeostasis and gene regulation. In this study, we describe the implementation of cell-based bioluminescence assays for rapid and sensitive measurement of those important redox cofactors. We show that the sensitivity of the assays (limit of detection ∼0.5 nM) enables the selective detection of total amounts of nonphosphorylated or phosphorylated dinucleotides directly in cell lysates. The total amount of NAD+NADH or NADP+NADPH levels can be detected in as low as 300 or 600 cells/well, respectively. The signal remains linear up to 5,000 cells/well with the maximum signal-to-background ratios ranging from 100 to 200 for NAD+NADH and from 50 to 100 for NADP+NADPH detection. The assays are robust (Z' value >0.7) and the inhibitor response curves generated using a known NAD biosynthetic pathway inhibitor FK866 correlate well with the reported data. More importantly, by multiplexing the dinucleotide detection assays with a fluorescent nonmetabolic cell viability assay, we show that dinucleotide levels can be decreased dramatically (>80%) by FK866 treatment before changes in cell viability are detected. The utility of the assays to identify modulators of intracellular nicotinamide adenine dinucleotide levels was further confirmed using an oncology active compound library, where novel dinucleotide regulating compounds were identified. For example, the histone deacetylase inhibitor entinostat was a potent inhibitor of cellular nicotinamide adenine dinucleotides, whereas the selective estrogen receptor modulator raloxifene unexpectedly caused a twofold increase in cellular nicotinamide adenine dinucleotide levels.
- Published
- 2014
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20. Validation of a HTS-amenable assay to detect drug-induced mitochondrial toxicity in the absence and presence of cell death.
- Author
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Swiss R, Niles A, Cali JJ, Nadanaciva S, and Will Y
- Subjects
- Biological Assay, Cell Death, Cell Line, Drug Evaluation, Preclinical, Hepatocytes, Humans, K562 Cells, Myocytes, Cardiac, Reproducibility of Results, Stem Cells cytology, Drug-Related Side Effects and Adverse Reactions, High-Throughput Screening Assays, Mitochondria drug effects
- Abstract
Drug-induced mitochondrial dysfunction is known to contribute to late stage compound attrition. Recently, assays that identify mitochondrial dysfunction have been developed but many require expensive reagents, specialized equipment, or specialized expertise such as isolation of mitochondria. Here, we validate a new 384-well format cell-based dual parameter assay that uses commonly available detection methods to measure both mitochondrial toxicity and cytotoxicity. In our initial evaluation, antimycin A, CCCP, nefazodone, flutamide, and digitonin were tested in K562 cells in both glucose- and galactose-supplemented media with a 2h incubation. The assay was able to correctly differentiate these compounds into mitochondrial toxicants and non-mitochondrial toxicants, and had excellent reproducibility. We next tested 74 compounds in K562 cells in both types of media and show that the assay was able to correctly identify some of the compounds as mitochondrial toxicants. Moreover, the assay could be simplified, without loss of information, by using K562 cells in galactose-containing medium alone. This simple, robust assay can be positioned as a rapid, early readout of mitochondrial and cellular toxicity. However, since the assay fails to identify some mitochondrial toxicants, further assays may be required to detect mitochondrial toxicity once lead compounds have been selected., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
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21. A bioluminescence assay for aldehyde dehydrogenase activity.
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Duellman SJ, Valley MP, Kotraiah V, Vidugiriene J, Zhou W, Bernad L, Osterman J, Kimball JJ, Meisenheimer P, and Cali JJ
- Subjects
- Molecular Structure, Aldehyde Dehydrogenase analysis, Aldehyde Dehydrogenase metabolism, Enzyme Assays methods, Luminescent Measurements
- Abstract
The aldehyde dehydrogenase (ALDH) family of enzymes is critical for cell survival and adaptation to cellular and environmental stress. These enzymes are of interest as therapeutic targets and as biomarkers of stem cells. This article describes a novel, homogeneous bioluminescence assay to study the activity of the ALDH enzymes. The assay is based on a proluciferin-aldehyde substrate that is recognized and utilized by multiple ALDH enzyme isoforms to generate luciferin. A detection reagent is added to inactivate ALDH and generate light from the luciferin product. The luminescent signal is dependent on the ALDH enzyme concentration and the incubation time in the ALDH reaction; moreover, the luminescent signal generated with the detection reagent is stable for greater than 2 h. This assay provides many advantages over standard NADH fluorescence assays. It is more sensitive and the signal stability provided allows convenient assay setup in batch mode-based high-throughput screens. The assay also shows an accurate pharmacological response for a common ALDH inhibitor and is robust, with a large assay window (S/B=64) and Z'=0.75., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
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22. Bioluminescent assays for cytochrome P450 enzymes.
- Author
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Auld DS, Veith H, and Cali JJ
- Subjects
- Animals, Humans, Protein Binding, Cytochrome P-450 Enzyme System metabolism, Enzyme Assays methods, Luminescent Measurements methods
- Abstract
The cytochrome P450 (CYP) family contains 57 enzymes in humans. The activity of CYPs against xenobiotics is a primary consideration in drug optimization efforts. Here we describe a series of bioluminescent assays that enable the rapid profiling of CYP activity against compound collections. The assays employ a coupled-enzyme format where firefly luciferase is used to measure CYP enzyme activity through metabolism of pro-luciferase substrates.
- Published
- 2013
- Full Text
- View/download PDF
23. Bioluminescent assays for ADME evaluation: dialing in CYP selectivity with luminogenic substrates.
- Author
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Cali JJ, Ma D, Wood MG, Meisenheimer PL, and Klaubert DH
- Subjects
- Cytochrome P-450 Enzyme Inhibitors, Drug Interactions, Humans, Luciferases metabolism, Microsomes, Liver enzymology, Molecular Probes metabolism, Reproducibility of Results, Substrate Specificity, Cytochrome P-450 Enzyme System metabolism, Luminescent Agents metabolism, Luminescent Measurements methods
- Abstract
Introduction: The cytochrome P450s (CYPs) are central to ADME studies because of their central role in drug metabolism. Proper CYP assay design and a correct understanding of CYP assay selectivity are critical for generating and interpreting biologically relevant data during drug development. Bioluminescent CYP assays use luminogenic probe substrates that have the unique property of producing photons in a second reaction with luciferase., Areas Covered: This article presents the general design principles for in vitro CYP assays. Specifically, the article focuses on the bioluminescent approach that couples CYP activity with photon production., Expert Opinion: Highly selective luminogenic substrates for CYP1A1, CYP1A2, CYP2C9, CYP3A4, CYP3A7, CYP4A and CYP4F have been developed with utility for interrogating the roles of these enzymes in biochemical and cell-based formats. These selective substrates are part of a larger collection of probes that deliver CYP inhibition and induction data that predict in vivo drug interactions. Furthermore, they support highly sensitive, rapid and scalable assays for cell-based and cell-free biochemical applications, which offer an alternative and often enabling option over conventional assay strategies.
- Published
- 2012
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- View/download PDF
24. Molecular imaging of cytochrome P450 activity in mice.
- Author
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Roncoroni C, Rizzi N, Brunialti E, Cali JJ, Klaubert DH, Maggi A, and Ciana P
- Subjects
- Acetals metabolism, Animals, Dexamethasone pharmacology, Firefly Luciferin analogs & derivatives, Firefly Luciferin metabolism, Genes, Reporter, Liver drug effects, Liver metabolism, Luciferases, Firefly genetics, Luciferases, Firefly metabolism, Luminescent Agents metabolism, Luminescent Measurements, Male, Mice, Mice, Transgenic, Recombinant Proteins genetics, Recombinant Proteins metabolism, Substrate Specificity, Tissue Distribution, Cytochrome P-450 CYP3A metabolism
- Abstract
Detailed knowledge of drug metabolism is relevant information provided by preclinical drug development research. Oxidative enzymes such as those belonging to P450 family of cytochromes (CYP) play a prominent role in drug metabolism. Here, we propose an innovative method based on bioluminescence in vivo imaging which has the potential to simplify the in vivo measurement of CYP activity also providing a dynamic measure of the effects of a drug on a specific P450 enzyme complex in a living mouse. The method is based on a pro-luciferin which can be converted into the active luciferase substrate by a specific P450 activity. The pro-luciferin is administered to a luciferase reporter mouse which produces luminescent signals in relation to the cytochrome activity present in each tissue. The photon emission generated can be easily localized and quantified by optical imaging. To demonstrate the validity of the system, we pharmacologically induced hepatic Cyp3a in the reporter mouse and proved that pro-luciferin administration generates a Cyp3a selective signal in the chest area that can be efficiently detected by optical imaging. The kind of tool generated has the potential to be exploited for the study of additional CYPs., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
25. Proluciferin acetals as bioluminogenic substrates for cytochrome P450 activity and probes for CYP3A inhibition.
- Author
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Meisenheimer PL, Uyeda HT, Ma D, Sobol M, McDougall MG, Corona C, Simpson D, Klaubert DH, and Cali JJ
- Subjects
- Chromatography, High Pressure Liquid, Cytochrome P-450 CYP3A Inhibitors, Humans, Inhibitory Concentration 50, Microsomes, Liver enzymology, Molecular Probes, Substrate Specificity, Cytochrome P-450 CYP3A metabolism, Firefly Luciferin metabolism
- Abstract
Cytochrome P450 (P450) assays use probe substrates to interrogate the influence of new chemical entities toward P450 enzymes. We report the synthesis and study of a family of bioluminogenic luciferin acetal substrates that are oxidized by P450 enzymes to form luciferase substrates. The luciferin acetals were screened against a panel of purified P450 enzymes. In particular, one proluciferin acetal has demonstrated sensitive and selective CYP3A4-catalyzed oxidation to a luciferin ester-K(m) and k(cat) are 2.88 μM and 5.87 pmol metabolite · min(-1) · pmol enzyme(-1), respectively. The proluciferin acetal was used as a probe substrate to measure IC(50) values of known inhibitors against recombinant CYP3A4 or human liver microsomes. IC(50) values for the known inhibitors correlate strongly with IC(50) values calculated from the traditional high-performance liquid chromatography-based probe substrate testosterone. Luciferin acetals are rapidly oxidized to unstable hemi-orthoesters by CYP3A resulting in luciferin esters and, therefore, are conducive to simple rapid CYP3A bioluminescent assays.
- Published
- 2011
- Full Text
- View/download PDF
26. Automated triplexed hepatocyte-based viability and CYP1A and -3A induction assays.
- Author
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Larson B, Moeller T, Banks P, and Cali JJ
- Subjects
- Automation, Laboratory, Biological Products pharmacology, Cell Survival drug effects, Cells, Cultured, Cryopreservation, Cytochrome P-450 CYP1A1 metabolism, Cytochrome P-450 CYP1A2 metabolism, Cytochrome P-450 CYP3A metabolism, Drug Interactions, Enzyme Induction, Genes, Reporter, Humans, Kinetics, Luciferases analysis, Reproducibility of Results, Biological Products analysis, Drug Evaluation, Preclinical methods, Hepatocytes cytology, Hepatocytes drug effects, Hepatocytes enzymology, High-Throughput Screening Assays
- Abstract
Cytochrome P450 (CYP) enzymes are key players in drug metabolism. Therefore, it is essential to understand how these enzymes can be affected by xenobiotics with regards to induction and toxicity to avoid potential drug-drug interactions. Typically, information has been gathered by combining data from multiple experiments, which is time-consuming and labor intensive, and interassay variability may lead to misinterpretation. Monitoring CYP induction and cytotoxicity by xenobiotics using an automated, multiplexed format can decrease workload and increase data confidence. Here the authors demonstrate the ability to monitor CYP1A and CYP3A4 induction, combined with a cytotoxicity measurement, from a single microplate well using cryopreserved human hepatocytes. The assay procedure was automated in a 384-well format, including cell manipulations, compound titration and transfer, and reagent dispensing, using simple robotic instrumentation. EC(50) and E(max) values were derived for multiple known CYP1A and -3A4 inducers. Induction and toxicological responses in the triplex system were validated based on literature values from conventional single-parameter assays. Validation and pharmacology data confirm that multiplexed cell-based CYP assays can simplify workload, save time and effort, and generate biologically relevant data.
- Published
- 2011
- Full Text
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27. The utility of semi-automating multiplexed assays for ADME/Tox applications.
- Author
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Larson B, Banks P, Shultz S, Sobol M, and Cali JJ
- Subjects
- Automation, Toxicity Tests
- Abstract
ADME-Tox testing examines the effects of an organism, tissue or cell on a compound, as well as the effects that the compound has on an organism, tissue or cell, and has gained in importance in the overall drug discovery process over the past twenty years. This is due to the rising percentage of drug candidate attrition in the 1990s and early 2000s due to adverse ADME/Tox profiles. The increased importance placed upon ADME/Tox testing has brought about new types of in-vitro assay technologies utilizing microplates to deliver the most pharmacologically relevant data. These tests, however, have typically been performed sequentially, where multiple assays over multiple microplates are used. This typically leads to increased time and cost required to generate the required information, and can sacrifice data quality. Multiplexed assays, however, where more than one piece of data can be attained from a single well or a single microplate, performed using appropriate liquid handling and detection instrumentation, can improve data quality and reduce the time and expense required to attain this information.
- Published
- 2011
- Full Text
- View/download PDF
28. A bioluminescent assay for the sensitive detection of proteases.
- Author
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Leippe DM, Nguyen D, Zhou M, Good T, Kirkland TA, Scurria M, Bernad L, Ugo T, Vidugiriene J, Cali JJ, Klaubert DH, and O'Brien MA
- Subjects
- Caseins chemistry, Caseins metabolism, Firefly Luciferin metabolism, Luminescent Agents chemistry, Models, Chemical, Oligopeptides metabolism, Peptide Hydrolases classification, Peptide Hydrolases metabolism, Recombinant Proteins standards, Sensitivity and Specificity, Firefly Luciferin analogs & derivatives, Fluorescent Dyes metabolism, Luciferases, Firefly metabolism, Luminescent Measurements methods, Peptide Hydrolases analysis
- Abstract
A bioluminescent general protease assay was developed using a combination of five luminogenic peptide substrates. The peptide-conjugated luciferin substrates were combined with luciferase to form a homogeneous, coupled-enzyme assay. This single-reagent format minimized backgrounds, gave stable signals, and reached peak sensitivity within 30 min. The bioluminescent assay was used to detect multiple proteases representing serine, cysteine, and metalloproteinase classes. The range of proteases detected was broader and the sensitivity greater, when compared with a standard fluorescent assay based on cleavage of the whole protein substrate casein. Fifteen of twenty proteases tested had signal-to-background ratios >10 with the bioluminescent method, compared with only seven proteases with the fluorescent approach. The bioluminescent assay also achieved lower detection limits (≤100 pg) than fluorescent methods. During protein purification processes, especially for therapeutic proteins, even trace levels of contamination can impact the protein's stability and activity. This sensitive, bioluminescent, protease assay should be useful for applications in which contaminating proteases are detrimental and protein purity is essential.
- Published
- 2011
- Full Text
- View/download PDF
29. Automated luminescence-based cytochrome P450 profiling using a simple, elegant robotic platform.
- Author
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Larson B, Banks P, Cali JJ, Sobol M, and Shultz S
- Subjects
- Drug Interactions, Drug-Related Side Effects and Adverse Reactions, Inhibitory Concentration 50, Cytochrome P-450 Enzyme Inhibitors, Cytochrome P-450 Enzyme System analysis, Drug Evaluation, Preclinical methods, Luminescent Measurements, Robotics methods
- Abstract
The determination of inhibitory effects that lead compounds have on cytochrome P450 (CYP) enzymes is an important part of today's drug discovery process. Assays can be performed early in the discovery process to predict adverse drug-drug interactions caused by CYP inhibition and to minimize the costs associated with terminating candidates in late stage development or worse, removing a drug from the market after launch. For early discovery work, testing substantial numbers of compounds is desirable, thus automated "mix and read" assays are beneficial. Here, we demonstrate the automation of the CYP profiling process using a simple, yet robust robotic platform. Compound titration, as well as transfer of compounds and assay components was performed by the same automated pipetting system. IC(50)s of small molecule drugs were determined using recombinant CYP enzymes, CYP3A4, -2C9, and -2D6 and luminogenic substrates specific to each. Compounds were profiled against all three enzymes on the same 384-well assay plate., (Copyright © 2011 Society for Laboratory Automation and Screening. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
30. Automation and miniaturization of the bioluminescent UGT-Glo assay for screening of UDP-glucuronosyltransferase inhibition by various compounds.
- Author
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Larson B, Kelts JL, Banks P, and Cali JJ
- Subjects
- Enzyme Inhibitors metabolism, Small Molecule Libraries, Automation, Laboratory methods, Drug Evaluation, Preclinical methods, Drug-Related Side Effects and Adverse Reactions, Glucuronosyltransferase analysis, Glucuronosyltransferase antagonists & inhibitors, Miniaturization methods
- Abstract
The uridine 5'-diphospho-glucuronosyltransferase (UGT) family of enzymes is involved in the metabolism of various compounds. These enzymes transfer a hydrophilic glucuronic acid moiety to their substrates, rendering them more water soluble and amenable to excretion. The UGTs act on various endogenous substrates, such as bilirubin, 17β-estradiol, and testosterone, and drugs and other xenobiotics. The function of these enzymes is essential for the clearance of drugs and toxicants, and alteration of UGT activity is a potential cause of adverse drug-drug interactions in vivo. This has stimulated an increased interest in the study of UGT function and inhibition, and the desire to profile new drug entities against UGT enzymes, similar to CYP450 profiling. However, certain factors have hindered the development of a robust method for UGT profiling. Current methods for assessing UGT enzyme activity are laborious and involve protein precipitation and/or chromatographic separation steps, which are not amenable to rapid screening applications for UGT inhibitors or substrates. The approach presented here is a bioluminescent assay for measuring UGT enzyme activity and inhibition in vitro. Using flexible, robust instrumentation in a 384-well microplate format, this study highlights the quick and easy assay implementation for estimation of inhibition kinetics with a variety of known and suspected UGT substrates and inhibitors., (Copyright © 2011 Society for Laboratory Automation and Screening. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
31. International society for the study of xenobiotics - 11th European meeting.
- Author
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Cali JJ
- Subjects
- Animals, Antibodies, Monoclonal administration & dosage, Antibodies, Monoclonal adverse effects, Antibodies, Monoclonal therapeutic use, Clinical Trials as Topic, Drug-Related Side Effects and Adverse Reactions, Humans, Models, Animal, Nucleic Acids administration & dosage, Nucleic Acids adverse effects, Nucleic Acids therapeutic use, Recombinant Proteins administration & dosage, Recombinant Proteins adverse effects, Recombinant Proteins therapeutic use, Pharmaceutical Preparations administration & dosage, Pharmaceutical Preparations metabolism, Xenobiotics metabolism
- Published
- 2009
32. N-Alkylated 6'-aminoluciferins are bioluminescent substrates for Ultra-Glo and QuantiLum luciferase: new potential scaffolds for bioluminescent assays.
- Author
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Woodroofe CC, Shultz JW, Wood MG, Osterman J, Cali JJ, Daily WJ, Meisenheimer PL, and Klaubert DH
- Subjects
- Alkylation, Animals, Catalytic Domain, Kinetics, Light, Luciferases chemistry, Luciferases, Firefly genetics, Luminescence, Models, Molecular, Protein Conformation, Recombinant Proteins metabolism, Substrate Specificity, Luciferases metabolism, Luciferases, Firefly chemistry, Luciferases, Firefly metabolism
- Abstract
A set of 6'-alkylated aminoluciferins are shown to be bioluminescent substrates for Ultra-Glo and QuantiLum luciferases. These studies demonstrate that both the engineered and wild-type firefly luciferases tolerate much greater steric bulk at the 6' position of luciferin than has been previously reported. The nature of the alkyl substituent strongly affects the strength of the bioluminescent signal, which varies widely based on size, shape, and charge. Several compounds were observed to generate more light than the corresponding unsubstituted 6'-aminoluciferin. Determination of Michaelis-Menten constants for the substrates with Ultra-Glo indicated that the variation arises primarily from differences in V max, ranging from 1.33 x 10 (4) to 332 x 10 (4) relative light units, but in some cases K m (0.73-10.8 microM) also plays a role. Molecular modeling results suggest that interactions of the side chain with a hydrogen-bonding network at the base of the luciferin binding pocket may influence substrate-enzyme binding.
- Published
- 2008
- Full Text
- View/download PDF
33. Society for biomolecular sciences--14th Annual Conference and Exhibition. Enhancing research productivity: quality tools, leads and candidates.
- Author
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Cali JJ
- Subjects
- Animals, Cell Line, Cytochromes c analysis, Cytochromes c metabolism, Drug Interactions, Efficiency, Organizational, Humans, Lipidoses chemically induced, Lipidoses drug therapy, Membrane Proteins metabolism, Pharmaceutical Preparations metabolism, Recombinant Proteins pharmacology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Molecular Biology trends, Research organization & administration
- Published
- 2008
34. Self-cleavable bioluminogenic luciferin phosphates as alkaline phosphatase reporters.
- Author
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Zhou W, Andrews C, Liu J, Shultz JW, Valley MP, Cali JJ, Hawkins EM, Klaubert DH, Bulleit RF, and Wood KV
- Subjects
- Alkaline Phosphatase analysis, Luminescence, Molecular Structure, Alkaline Phosphatase chemistry, Firefly Luciferin chemical synthesis, Firefly Luciferin chemistry, Phosphates chemical synthesis, Phosphates chemistry
- Published
- 2008
- Full Text
- View/download PDF
35. Bioluminescent assays for ADMET.
- Author
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Cali JJ, Niles A, Valley MP, O'Brien MA, Riss TL, and Shultz J
- Subjects
- Adenosine Triphosphatases metabolism, Adenosine Triphosphate metabolism, Animals, Caspases chemistry, Caspases metabolism, Cell Survival drug effects, Cytochrome P-450 Enzyme System metabolism, Glutathione metabolism, Humans, Luciferases analysis, Luciferases metabolism, Mixed Function Oxygenases analysis, Mixed Function Oxygenases metabolism, Pharmacokinetics, Luminescence, Pharmaceutical Preparations metabolism
- Abstract
Bioluminescent assays couple a limiting component of a luciferase-catalyzed photon-emitting reaction to a variable parameter of interest, while holding the other components constant or non-limiting. In this way light output varies with the parameter of interest. This review describes three bioluminescent assay types that use firefly luciferase to measure properties of drugs and other xenobiotics which affect their absorption, distribution, metabolism, elimination and toxicity. First, levels of the luciferase enzyme itself are measured in gene reporter assays that place a luciferase cDNA under the control of regulatory sequences from ADMET-related genes. This approach identifies activators of nuclear receptors that regulate expression of genes encoding drug-metabolizing enzymes and drug transporters. Second, drug effects on enzyme activities are monitored with luminogenic probe substrates that are inactive derivatives of the luciferase substrate luciferin. The enzymes of interest convert the substrates to free luciferin, which is detected in a second reaction with luciferase. This approach is used with the drug-metabolizing CYP and monoamine oxidase enzymes, apoptosis-associated caspase proteases, a marker protease for non-viable cells and with glutathione-S-transferase to measure glutathione levels in cell lysates. Third, ATP concentration is monitored as a marker of cell viability or cell death and as a way of identifying substrates for the ATP-dependent drug transporter, P-glycoprotein. Luciferase activity is measured in the presence of a sample that supplies the requisite luciferase substrate, ATP, so that light output varies with ATP concentration. The bioluminescent ADMET assays are rapid and sensitive, amenable to automated high-throughput applications and offer significant advantages over alternative methods.
- Published
- 2008
- Full Text
- View/download PDF
36. A bioluminescent assay for monoamine oxidase activity.
- Author
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Valley MP, Zhou W, Hawkins EM, Shultz J, Cali JJ, Worzella T, Bernad L, Good T, Good D, Riss TL, Klaubert DH, and Wood KV
- Subjects
- Animals, Kinetics, Luciferases metabolism, Luciferases pharmacokinetics, Metabolic Networks and Pathways, Methyl Ethers chemistry, Methyl Ethers pharmacokinetics, Mice, Mitochondria, Liver metabolism, Sensitivity and Specificity, Luminescent Measurements methods, Monoamine Oxidase analysis, Monoamine Oxidase metabolism, Monoamine Oxidase Inhibitors metabolism
- Abstract
This article describes a novel two-step homogeneous bioluminescent assay for monoamine oxidase (MAO) that is simple, sensitive, and amenable to high-throughput screening. In the first step, MAO reacts with an aminopropylether analog of methyl ester luciferin. In the second step, a luciferin detection reagent inactivates MAO and converts the product of the first step into a luminescent signal. The amount of light produced is proportional to the amount of MAO and the time of incubation in the first step, but the luminescent signal is stable in the second step with a half-life greater than 5h. The assay has high precision, is more sensitive than current fluorescent methods, and can accurately measure the binding constants of known substrates and inhibitors. An automated screen of the Sigma-RBI Library of Pharmacologically Active Compounds (LOPAC(1280)) revealed a surprisingly high percentage of MAO inhibitors (16%) with a low false hit rate (0.9%). This implies that a significant number of compounds interact with the MAO enzymes and suggests that it is important to include MAO assays in drug metabolism studies. Other advantages of this bioluminescent assay over comparable fluorescent assays are discussed.
- Published
- 2006
- Full Text
- View/download PDF
37. Luminogenic cytochrome P450 assays.
- Author
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Cali JJ, Ma D, Sobol M, Simpson DJ, Frackman S, Good TD, Daily WJ, and Liu D
- Subjects
- Algorithms, Animals, Chromatography, High Pressure Liquid, Cytochrome P-450 Enzyme Inhibitors, Enzyme Inhibitors, Fluorescent Dyes, Humans, Luciferases metabolism, Substrate Specificity, Cytochrome P-450 Enzyme System metabolism, Luminescent Agents chemistry
- Abstract
Luminogenic cytochrome P450 (CYP) assays couple CYP enzyme activity to firefly luciferase luminescence in a technology called P450-Glo(TM) (Promega). Luminogenic substrates are used in assays of human CYP1A1, -1A2, -1B1, -2C8, -2C9, -2C19, -2D6, -2J2, -3A4, -3A7, -4A11, -4F3B, -4F12 and -19. The assays detect dose-dependent CYP inhibition by test compounds against recombinant CYP enzymes or liver microsomes. Induction or inhibition of CYP activities in cultured hepatocytes is measured in a nonlytic approach that leaves cells intact for additional analysis. Luminogenic CYP assays offer advantages of speed and safety over HPLC and radiochemical-based methods. Compared with fluorogenic methods the approach offers advantages of improved sensitivity and decreased interference between optical properties of test compound and CYP substrate. These homogenous assays are sensitive and robust tools for high-throughput CYP screening in early drug discovery.
- Published
- 2006
- Full Text
- View/download PDF
38. Type VIII adenylyl cyclase in rat beta cells: coincidence signal detector/generator for glucose and GLP-1.
- Author
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Delmeire D, Flamez D, Hinke SA, Cali JJ, Pipeleers D, and Schuit F
- Subjects
- Animals, Calcium metabolism, Calcium pharmacology, Calcium Channel Blockers pharmacology, Calcium Channels, L-Type drug effects, Calmodulin pharmacology, Cells, Cultured, Cyclic AMP metabolism, Drug Combinations, Drug Synergism, GTP-Binding Protein alpha Subunits, Gs pharmacology, Glucagon pharmacology, Glucagon-Like Peptide 1, Glucagon-Like Peptide-1 Receptor, Glucose pharmacology, Insulin metabolism, Islets of Langerhans drug effects, Islets of Langerhans metabolism, Male, Peptide Fragments pharmacology, Protein Precursors pharmacology, Rats, Rats, Wistar, Receptors, Glucagon metabolism, Verapamil pharmacology, Adenylyl Cyclases metabolism, Glucagon metabolism, Glucose metabolism, Islets of Langerhans enzymology, Peptide Fragments metabolism, Protein Precursors metabolism, Signal Transduction physiology
- Abstract
Aims/hypothesis: The secretory function of pancreatic beta cells is synergistically stimulated by two signalling pathways which mediate the effects of nutrients and hormones such as glucagon-like peptide 1 (GLP-1), glucose-dependent insulinotropic peptide (GIP) or glucagon. These hormones are known to activate adenylyl cyclase in beta cells. We examined the type of adenylyl cyclase that is associated with this synergistic interaction., Methods: Insulin release, cAMP production, adenylyl cyclase activity, mRNA and protein expression were measured in fluorescence-activated cell sorter-purified rat beta cells and in the rat beta-cell lines RINm5F, INS-1 832/13 and INS-1 832/2., Results: In primary beta cells, glucagon and GLP-1 synergistically potentiate the stimulatory effect of 20 mmol/l glucose on insulin release and cAMP production. Both effects are abrogated in the presence of the L-type Ca(2+)-channel blocker verapamil. The cAMP-producing activity of adenylyl cyclase in membranes from RINm5F cells is synergistically increased by Ca(2+)-calmodulin and recombinant GTP(gamma)S-activated G(s alpha)-protein subunits. This type of regulation is characteristic for type I and type VIII AC isoforms. Consistent with this functional data, AC mRNA analysis shows abundant expression of type VI AC, four splice variants of type VIII AC and low expression level of type I AC in beta cells. Type VIII AC expression at the protein level was observed using immunoblots of RINm5F cell extracts., Conclusion/interpretation: This study identifies type VIII AC in insulin-secreting cells as one of the potential molecular targets for synergism between GLP-1 receptor mediated and glucose-mediated signalling.
- Published
- 2003
- Full Text
- View/download PDF
39. Dimerization of mammalian adenylate cyclases.
- Author
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Gu C, Cali JJ, and Cooper DM
- Subjects
- Adenylyl Cyclases chemistry, Adenylyl Cyclases genetics, Dimerization, Energy Transfer, Fluorescence, Green Fluorescent Proteins, HeLa Cells, Humans, Luminescent Proteins metabolism, Mutation, Precipitin Tests, Adenylyl Cyclases metabolism
- Abstract
Mammalian adenylate cyclases are predicted to possess complex topologies, comprising two cassettes of six transmembrane-spanning motifs followed by a cytosolic, catalytic ATP-binding domain. Recent studies have begun to provide insights on the tertiary assembly of these proteins; crystallographic analysis has revealed that the two cytosolic domains dimerize to form a catalytic core, while more recent biochemical and cell biological analysis shows that the two transmembrane cassettes also associate to facilitate the functional assembly and trafficking of the enzyme. The older literature had suggested that adenylate cyclases might form higher order aggregates, although the methods used did not necessarily provide convincing evidence of biologically relevant events. In the present study, we have pursued this question by a variety of approaches, including rescue or suppression of function by variously modified molecules, coimmunoprecipitation and fluorescence resonance energy transfer (FRET) analysis between molecules in living cells. The results strongly suggest that adenylate cyclases dimerize (or oligomerize) via their hydrophobic domains. It is speculated that this divalent property may allow adenylate cyclases to participate in multimeric signaling assemblies.
- Published
- 2002
- Full Text
- View/download PDF
40. Isozyme-dependent sensitivity of adenylyl cyclases to P-site-mediated inhibition by adenine nucleosides and nucleoside 3'-polyphosphates.
- Author
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Johnson RA, Désaubry L, Bianchi G, Shoshani I, Lyons E Jr, Taussig R, Watson PA, Cali JJ, Krupinski J, Pieroni JP, and Iyengar R
- Subjects
- Adenosine pharmacology, Adenylyl Cyclases, Animals, Binding Sites, Brain enzymology, Calcium metabolism, Calmodulin metabolism, Cattle, Dideoxyadenosine analogs & derivatives, Dideoxyadenosine pharmacology, Enzyme Inhibitors pharmacology, GTP-Binding Protein alpha Subunits, Gs metabolism, Oncogene Proteins metabolism, Rats, Recombinant Proteins metabolism, Structure-Activity Relationship, Adenosine analogs & derivatives, Adenylyl Cyclase Inhibitors, Isoenzymes antagonists & inhibitors, Membrane Proteins, Nerve Tissue Proteins
- Abstract
Recombinant adenylyl cyclase isozyme Types I, II, VI, VII, and three splice variants of Type VIII were compared for their sensitivity to P-site-mediated inhibition by several adenine nucleoside derivatives and by the family of recently synthesized adenine nucleoside 3'-polyphosphates (Désaubry, L., Shoshani, I., and Johnson, R. A. (1996) J. Biol. Chem. 271, 14028-14034). Inhibitory potencies were dependent on isozyme type, the mode of activation of the respective isozymes, and on P-site ligand. For the nucleoside derivatives potency typically followed the order 2',5'-dideoxyadenosine (2',5'-ddAdo) > beta-adenosine > 9-(cyclopentyl)-adenine (9-CP-Ade) >/= 9-(tetrahydrofuryl)-adenine (9-THF-Ade; SQ 22,536), with the exception of Type II adenylyl cyclase, which was essentially insensitive to inhibition by 9-CP-Ade. For the adenine nucleoside 3'-polyphosphates inhibitory potency followed the order Ado < 2'-dAdo < 2',5'-ddAdo and 3'-mono- < 3'-di- < 3'-triphosphate. Differences in potency of these ligands were noted between isozymes. The most potent ligand was 2',5'-dd-3'-ATP with IC50 values of 40-300 nM. The data demonstrate isozyme selectivity for some ligands, suggesting the possibility of isozyme-selective inhibitors to take advantage of differences in P-site domains among adenylyl cyclase isozymes. Differential expression of adenylyl cyclase isozymes may dictate the physiological sensitivity and hence importance of this regulatory mechanism in different cells or tissues.
- Published
- 1997
- Full Text
- View/download PDF
41. Splice variants of type VIII adenylyl cyclase. Differences in glycosylation and regulation by Ca2+/calmodulin.
- Author
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Cali JJ, Parekh RS, and Krupinski J
- Subjects
- Adenylyl Cyclases genetics, Adenylyl Cyclases isolation & purification, Alternative Splicing, Animals, Base Sequence, Calcium metabolism, Cloning, Molecular, DNA, Complementary genetics, DNA, Complementary isolation & purification, Glycosylation, Humans, Isoenzymes genetics, Isoenzymes isolation & purification, Molecular Sequence Data, RNA, Messenger genetics, Rats, Adenylyl Cyclases metabolism, Brain enzymology, Calmodulin metabolism, Isoenzymes metabolism, RNA, Messenger metabolism
- Abstract
Three alternatively spliced type VIII adenylyl cyclase messages have been identified by cDNA cloning and amplification from rat brain cDNA. Type VIII-A was previously referred to simply as type VIII (Cali, J. J., Zwaagstra, J. C., Mons, N., Cooper, D. M. F., and Krupinski, J. (1994) J. Biol. Chem. 269, 12190-12195). The types VIII-B and -C cDNAs differ from that of type VIII-A by deletion of 90 and 198 base pair exons, respectively, which encode a 30-amino acid extracellular domain with two consensus sites for N-linked glycosylation and a 66-amino acid cytoplasmic domain. Stable expression of types VIII-A, -B, and -C cDNAs in human embryonal kidney 293 (HEK-293) cells leads to the appearance of novel proteins, which are recognized by type VIII-specific antibodies and which co-migrate with immunoreactive species detected on immunoblots of rat brain membranes. Types VIII-A and -C are modified by N-linked glycosylation, while type VIII-B is insensitive to treatment with N-glycosidase F. An influx of extracellular Ca2+ stimulates cAMP accumulation in HEK-293 cells stably expressing type VIII-A, -B, or -C, but not in control cells. Adenylyl cyclase activity of each of the variants is stimulated by Ca2+/calmodulin and the EC50 for activation of type VIII-C is one fourth of that for either type VIII-A or -B. Type VIII-C also has a distinct Km for substrate, which is approximately 4-12-fold higher than that for types VIII-A or -B depending on whether Mn2+ or Mg2+ is the counterion for ATP. The differences in the structural and enzymatic properties of these three variants are discussed.
- Published
- 1996
- Full Text
- View/download PDF
42. Type VIII adenylyl cyclase. A Ca2+/calmodulin-stimulated enzyme expressed in discrete regions of rat brain.
- Author
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Cali JJ, Zwaagstra JC, Mons N, Cooper DM, and Krupinski J
- Subjects
- Adenylyl Cyclases analysis, Amino Acid Sequence, Animals, Base Sequence, Brain cytology, Cell Line, Cyclic AMP metabolism, DNA, Complementary metabolism, GTP-Binding Proteins metabolism, Guanosine 5'-O-(3-Thiotriphosphate) pharmacology, Humans, Immunoblotting, Immunohistochemistry, In Situ Hybridization, Isoenzymes analysis, Isoenzymes biosynthesis, Kidney, Kinetics, Male, Molecular Sequence Data, Oligonucleotide Probes, Organ Specificity, Peptides chemical synthesis, Peptides immunology, Protein Biosynthesis, Rats, Rats, Sprague-Dawley, Recombinant Proteins metabolism, Transfection, Adenylyl Cyclases biosynthesis, Brain enzymology, Calcium pharmacology, Calmodulin pharmacology
- Abstract
A cDNA that encodes type VIII adenylyl cyclase has been isolated from two rat brain libraries. The open reading frame encodes a 1248-amino acid protein predicted to have two sets of six transmembrane spans and two putative nucleotide binding domains as is characteristic of other mammalian adenylyl cyclases. Two type VIII messages are detected in rat brain with estimated sizes of 5.5 and 4.4 kilobases. In situ hybridization indicates that the type VIII messages are most abundantly expressed in the granule cells of the dentate gyrus, the pyramidal cells of hippocampal fields CA1-CA3, the entorhinal cortex, and the piriform cortex. Hybridization is also detected in the neocortex, the amygdaloid complex, and regions of the thalamus and hypothalamus. Stable expression of the type VIII cDNA in human embryonal kidney cells leads to the appearance of a novel 165-kDa glycoprotein in the membrane fraction. Stimulation of these cells with agents that increase intracellular Ca2+ results in up to 43-fold increases in cAMP accumulation over that of control cells transfected with the expression vector. Addition of isoproterenol alone does not lead to type VIII-specific effects in intact cells. Adenylyl cyclase activity in membranes prepared from type VIII-transformed cells is stimulated up to 40-fold by the addition of Ca2+/calmodulin (EC50 = 53 nM calmodulin). The addition of activated recombinant alpha subunit of Gs synergistically increases the Ca2+/calmodulin-stimulated activity. A possible role for type VIII adenylyl cyclase in long-term potentiation is discussed.
- Published
- 1994
43. Frameshift and splice-junction mutations in the sterol 27-hydroxylase gene cause cerebrotendinous xanthomatosis in Jews or Moroccan origin.
- Author
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Leitersdorf E, Reshef A, Meiner V, Levitzki R, Schwartz SP, Dann EJ, Berkman N, Cali JJ, Klapholz L, and Berginer VM
- Subjects
- Adult, Amino Acid Sequence, Base Sequence, Cholestanetriol 26-Monooxygenase, Chromosome Mapping, Exons genetics, Female, Gene Library, Genome, Human, Heterozygote, Humans, Introns genetics, Israel, Molecular Sequence Data, Morocco ethnology, Polymerase Chain Reaction, Sequence Analysis, DNA, Xanthomatosis diagnosis, Xanthomatosis physiopathology, Cytochrome P-450 Enzyme System genetics, Frameshift Mutation genetics, Genes, Recessive genetics, Jews genetics, RNA Splicing genetics, Steroid Hydroxylases genetics, Xanthomatosis genetics
- Abstract
The sterol 27-hydroxylase (EC 1.14.13.15) catalyzes steps in the oxidation of sterol intermediates that form bile acids. Mutations in this gene give rise to the autosomal recessive disease cerebrotendinous xanthomatosis (CTX). CTX is characterized by tendon xanthomas, cataracts, a multitude of neurological manifestations, and premature atherosclerosis. A relatively high prevalence of the disease has been noted in Jews originating from Morocco. The major objectives of the present investigation were to determine the gene structure and characterize the common mutant alleles that cause CTX in Moroccan Jews. The gene contains nine exons and eight introns and encompasses at least 18.6 kb of DNA. The putative promoter region is rich in guanidine and cytosine residues and contains potential binding sites for the transcription factor Sp1 and the liver transcription factor, LF-B1. Blotting analysis revealed that the mutant alleles do not produce any detectable sterol 27-hydroxylase mRNA. No major gene rearrangements were found and single-strand conformational polymorphism followed by sequence analysis identified two underlying mutations: deletion of thymidine in exon 4 and a guanosine to adenosine substitution at the 3' splice acceptor site of intron 4 of the gene. The molecular characterization of CTX in Jews of Moroccan origin provides a definitive diagnosis of this treatable disease.
- Published
- 1993
- Full Text
- View/download PDF
44. Selective tissue distribution of G protein gamma subunits, including a new form of the gamma subunits identified by cDNA cloning.
- Author
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Cali JJ, Balcueva EA, Rybalkin I, and Robishaw JD
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Brain physiology, Cattle, GTP-Binding Proteins biosynthesis, GTP-Binding Proteins isolation & purification, Macromolecular Substances, Molecular Sequence Data, Organ Specificity, Poly A genetics, Polymerase Chain Reaction methods, RNA genetics, RNA, Messenger, Recombinant Proteins biosynthesis, Recombinant Proteins isolation & purification, Restriction Mapping, Sequence Homology, Amino Acid, Cloning, Molecular methods, DNA genetics, GTP-Binding Proteins genetics
- Abstract
The GTP-binding regulatory proteins (G proteins) that transduce signals from receptors to effectors are composed of alpha, beta, and gamma subunits. Whereas the role of alpha subunits in directly regulating effector activity is widely accepted, it has recently been demonstrated that beta gamma subunits may also directly regulate effector activity. This has made clear the importance of identifying and characterizing beta and gamma subunits. We have isolated a cDNA clone encoding a new gamma subunit, referred to here as the gamma 7 subunit, using probes based on peptide sequences of a gamma subunit previously purified from bovine brain. The clone contains a 1.47-kilobase cDNA insert, which includes an open reading frame of 204 base pairs that predicts a 68-amino acid polypeptide with a calculated M(r) of 7553. The predicted protein shares amino acid identities with the other known gamma subunits, ranging from 38 to 68%. Also characteristic of gamma subunits is a carboxyl-terminal CAAX motif. The expression of the gamma 7 subunit as well as the gamma 2, gamma 3, and gamma 5 subunits was examined in several bovine tissues at both the mRNA and protein levels. Whereas the gamma 2 and gamma 3 subunits were selectively expressed in brain, the gamma 5 and gamma 7 subunits were expressed in a variety of tissues. Thus, the gamma 5 and gamma 7 subunits are the first G protein gamma subunits known that could participate in the regulation of widely distributed signal transduction pathways.
- Published
- 1992
45. Cloning of the human cholesterol 7 alpha-hydroxylase gene (CYP7) and localization to chromosome 8q11-q12.
- Author
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Cohen JC, Cali JJ, Jelinek DF, Mehrabian M, Sparkes RS, Lusis AJ, Russell DW, and Hobbs HH
- Subjects
- Amino Acid Sequence, Animals, Blotting, Southern, Cloning, Molecular, Exons genetics, Gene Frequency, Humans, Hybrid Cells, Introns genetics, Mice, Molecular Sequence Data, Nucleic Acid Hybridization, Pedigree, Polymorphism, Genetic, Polymorphism, Restriction Fragment Length, Sequence Homology, Cholesterol 7-alpha-Hydroxylase genetics, Chromosome Mapping, Chromosomes, Human, Pair 8
- Abstract
Cholesterol 7 alpha-hydroxylase (7 alpha-hydroxylase) is a microsomal cytochrome P450 that catalyzes the first step in bile acid synthesis. In this paper, we describe the cloning, characterization, and chromosomal mapping of the human 7 alpha-hydroxylase gene (CYP7). The gene spans 10 kb and contains six exons and five introns. The exon-intron boundaries are completely conserved between the human and rat genes. Sequencing of the 5' flanking region revealed consensus recognition sequences for a number of liver-specific transcription factors. The human CYP7 gene was mapped to chromosome 8q11-q12 using both mouse-human somatic cell hybrids and in situ chromosomal hybridization studies. A total of four single-stranded conformation-dependent DNA polymorphisms and an Alu sequence-related polymorphism were identified. Of the individuals analyzed, 80% were heterozygous for at least one of these five polymorphisms. The localization and characterization of the human 7 alpha-hydroxylase gene, as well as the identification of polymorphisms, provide the molecular tools necessary to investigate the role of this gene in disorders of cholesterol and bile acid metabolism.
- Published
- 1992
- Full Text
- View/download PDF
46. Mutations in the bile acid biosynthetic enzyme sterol 27-hydroxylase underlie cerebrotendinous xanthomatosis.
- Author
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Cali JJ, Hsieh CL, Francke U, and Russell DW
- Subjects
- Animals, Blotting, Northern, Blotting, Western, Brain Diseases metabolism, Cell Line, Cholestanetriol 26-Monooxygenase, Chromosome Mapping, Chromosomes, Human, Pair 2, DNA genetics, Gene Expression Regulation, Enzymologic, Humans, Mice, Molecular Sequence Data, Mutation, Polymerase Chain Reaction, RNA, Messenger analysis, Sequence Homology, Nucleic Acid, Transfection, Xanthomatosis metabolism, Bile Acids and Salts biosynthesis, Brain Diseases genetics, Cytochrome P-450 Enzyme System genetics, Steroid Hydroxylases genetics, Xanthomatosis genetics
- Abstract
The sterol storage disorder cerebrotendinous xanthomatosis (CTX) is characterized by abnormal deposition of cholesterol and cholestanol in multiple tissues. Deposition in the central nervous system leads to neurological dysfunction marked by dementia, spinal cord paresis, and cerebellar ataxia. Deposition in other tissues causes tendon xanthomas, premature atherosclerosis, and cataracts. In two unrelated patients with CTX, we have identified different point mutations in the gene (CYP27) encoding sterol 27-hydroxylase, a key enzyme in the bile acid biosynthesis pathway. Transfection of mutant cDNAs into cultured cells results in the synthesis of immunoreactive sterol 27-hydroxylase protein with greatly diminished enzyme activity. We have localized the CYP27 gene to the q33-qter interval of human chromosome 2, and to mouse chromosome 1, in agreement with the autosomal recessive inheritance pattern of CTX. These findings underscore the essential role played by sterols in the central nervous system and suggest that mutations in other sterol metabolizing enzymes may contribute to diseases with neurological manifestations.
- Published
- 1991
47. Characterization of human sterol 27-hydroxylase. A mitochondrial cytochrome P-450 that catalyzes multiple oxidation reaction in bile acid biosynthesis.
- Author
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Cali JJ and Russell DW
- Subjects
- Amino Acid Sequence, Animals, Blotting, Northern, Catalysis, Cell Line, Cholestanetriol 26-Monooxygenase, Cytochrome P-450 Enzyme System isolation & purification, DNA genetics, DNA isolation & purification, Gene Expression Regulation, Enzymologic, Humans, Molecular Sequence Data, Oxidation-Reduction, RNA analysis, Rabbits, Sequence Homology, Nucleic Acid, Steroid Hydroxylases isolation & purification, Bile Acids and Salts biosynthesis, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Mitochondria, Liver enzymology, Steroid Hydroxylases genetics
- Abstract
The enzyme sterol 27-hydroxylase catalyzes the first step in the oxidation of the side chain of sterol intermediates in the bile acid synthesis pathway. Human sterol 27-hydroxylase cDNAs were isolated from a liver cDNA library by cross-hybridization with a previously cloned rabbit cDNA probe. DNA sequence analysis of hybridization-positive clones predicted a human sterol 27-hydroxylase consisting of a 33-amino-acid mitochondrial signal sequence followed by a mature protein of 498 amino acids. RNA blotting experiments demonstrated sterol 27-hydroxylase mRNAs of approximately 1.8 to 2.2 kilobases in liver and fibroblast cells. The steady state levels of the mRNA did not change when cultured cells were grown in the presence or absence of sterols. Introduction of the sterol 27-hydroxylase cDNA into Simian COS cells resulted in the expression of active enzyme capable of catalyzing multiple oxidation reactions (R-CH3----R-CH2OH----R-COOH) at carbon 27 of sterol intermediates of the bile acid synthesis pathway.
- Published
- 1991
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