16 results on '"C.M. Murphy"'
Search Results
2. Accurate and semi-automated analysis of bacterial association with mammalian cells
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C.M. Murphy, George Galea, Stephen G. J. Smith, Samantha E. Paré, and Jeremy C. Simpson
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0301 basic medicine ,Microbiology (medical) ,Salmonella typhimurium ,Green Fluorescent Proteins ,Gene Expression ,CHO Cells ,medicine.disease_cause ,Microbiology ,Fluorescence ,Green fluorescent protein ,Cell Line ,03 medical and health sciences ,chemistry.chemical_compound ,Cricetulus ,Fluorescence microscope ,medicine ,Extracellular ,Escherichia coli ,Image Processing, Computer-Assisted ,Animals ,TetR ,Promoter Regions, Genetic ,Molecular Biology ,Fluorescent Dyes ,Bacteriological Techniques ,biology ,Bacteria ,Staining and Labeling ,Intracellular parasite ,biology.organism_classification ,Molecular biology ,030104 developmental biology ,chemistry ,Biochemistry ,Microscopy, Fluorescence ,High-content screening ,Host-Pathogen Interactions - Abstract
To efficiently and accurately quantify the interactions of bacteria with mammalian cells, a reliable fluorescence microscopy assay was developed. Bacteria were engineered to become rapidly and stably fluorescent using Green Fluorescent Protein (GFP) expressed from an inducible Tet promoter. Upon application of the fluorescent bacteria onto a monolayer, extracellular bacteria could be discriminated from intracellular bacteria by antibody staining and microscopy. All bacteria could be detected by GFP expression. External bacteria stained orange, whereas internalised bacteria did not. Internalised bacteria could thus be discriminated from external bacteria by virtue of being green but not orange fluorescent. Image acquisition and counting of various fluorophore-stained entities were accomplished with a high-content screening platform. This allowed for semi-automated and accurate counting of intracellular and extracellular bacteria.
- Published
- 2015
3. Importance of Arginine 20 of the Swine Vesicular Disease Virus 2A Protease for Activity and Virulence
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Melvyn Quan, Toru Inoue, Helen L. Johns, Scott M. Reid, Graham J. Belsham, Angela T. Clark, C.M. Murphy, Yoshihiro Sakoda, and Soren Alexandersen
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Gene Expression Regulation, Viral ,Proteases ,viruses ,medicine.medical_treatment ,Molecular Sequence Data ,Immunology ,Virulence ,Biology ,Arginine ,Microbiology ,Virus ,Viral Proteins ,Swine Vesicular Disease ,Virology ,Enterovirus Infections ,medicine ,Animals ,Amino Acid Sequence ,Swine vesicular disease ,Protease ,Base Sequence ,Sequence Analysis, DNA ,Enterovirus B, Human ,NS2-3 protease ,Cysteine Endopeptidases ,Swine Vesicular Disease Virus ,Viral replication ,Insect Science ,Mutation ,Pathogenesis and Immunity - Abstract
A major virulence determinant of swine vesicular disease virus (SVDV), an Enterovirus that causes an acute vesicular disease, has been mapped to residue 20 of the 2A protease. The SVDV 2A protease cleaves the 1D-2A junction in the viral polyprotein, induces cleavage of translation initiation factor eIF4GI, and stimulates the activity of enterovirus internal ribosome entry sites (IRESs). The 2A protease from an attenuated strain of SVDV (Ile at residue 20) is significantly defective at inducing cleavage of eIF4GI and the activation of IRES-dependent translation compared to the 2A protease from a pathogenic strain (J1/73, Arg at residue 20), but the two proteases have similar 1D-2A cleavage activities (Y. Sakoda, N. Ross-Smith, T. Inoue, and G. J. Belsham, J. Virol. 75:10643-10650, 2001). Residue 20 has now been modified to every possible amino acid, and the activities of each mutant 2A protease has been analyzed. Selected mutants were reconstructed into full-length SVDV cDNA, and viruses were rescued. The rate of virus growth in cultured swine kidney cells reflected the efficiency of 2A protease activity. In experimentally infected pigs, all four of the mutant viruses tested displayed much-reduced virulence compared to the J1/73 virus but a significant, albeit reduced, level of viral replication and excretion was detected. Direct sequencing of cDNA derived from samples taken early and late in infection indicated that a gradual selection-reversion to a more efficient protease occurred. The data indicated that extensive sequence change and selection may introduce a severe bottleneck in virus replication, leading to a decreased viral load and reduced or no clinical disease.
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- 2005
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4. Extent of reduction of foot-and-mouth disease virus RNA load in oesophageal–pharyngeal fluid after peak levels may be a critical determinant of virus persistence in infected cattle
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Jeanette Knight, Melvyn Quan, Soren Alexandersen, C.M. Murphy, and Z. Zhang
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viruses ,Virus ,Persistence (computer science) ,Esophagus ,Virology ,medicine ,Animals ,Therapeutic Irrigation ,Aphthovirus ,Foot-and-mouth disease ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,RNA ,Viral Load ,medicine.disease ,biology.organism_classification ,Body Fluids ,Viral replication ,Foot-and-Mouth Disease Virus ,Foot-and-Mouth Disease ,Carrier State ,Pharynx ,RNA, Viral ,Cattle ,Foot-and-mouth disease virus ,Viral load - Abstract
To investigate whether foot-and-mouth disease virus (FMDV) RNA loads in oesophageal–pharyngeal fluid (OP-fluid) in the early course of infection is related to the outcome of virus persistence, viral RNA in OP-fluid samples from cattle experimentally infected with FMDV type O was quantitatively analysed by using a quantitative real-time RT-PCR. Viral RNA was detected within 24 h post-infection (p.i.) in all infected animals. Rapid virus replication led to peak levels of viral RNA load by 30–53 h p.i., and then the load declined at various rates. In some animals (n=12, so-called non-carriers) viral RNA became undetectable between 7 and 18 days p.i. In contrast, in persistently infected animals (n=12, so-called carriers) viral RNA persisted in OP-fluid samples at detectable levels beyond 28 days p.i. Analysis of early viral decay/clearance and virus clearance half-life in OP-fluid samples showed that the extent of reduction of viral RNA in OP-fluid samples immediately following peak levels is a critical determinant of the outcome of FMDV persistence.
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- 2004
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5. Age-related changes in parahippocampal white matter integrity: A diffusion tensor imaging study
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Glenn T. Stebbins, Leyla deToledo-Morrell, Sarah George, Carol A. Barnes, C.M. Murphy, Raj C. Shah, Travis R. Stoub, Emily Rogalski, and C. Ferrari
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Adult ,Male ,Aging ,Cognitive Neuroscience ,Perforant Pathway ,Hippocampus ,Experimental and Cognitive Psychology ,Sensory system ,chemical and pharmacologic phenomena ,Neuropsychological Tests ,Nerve Fibers, Myelinated ,Article ,Temporal lobe ,White matter ,Behavioral Neuroscience ,Memory ,medicine ,Humans ,Aged ,Aged, 80 and over ,Memory Disorders ,Age Factors ,Organ Size ,Entorhinal cortex ,Temporal Lobe ,medicine.anatomical_structure ,Diffusion Tensor Imaging ,Logistic Models ,Female ,Psychology ,Neuroscience ,Diffusion MRI ,Tractography - Abstract
The axons in the parahippocampal white matter (PWM) region that includes the perforant pathway relay multimodal sensory information, important for memory function, from the entorhinal cortex to the hippocampus. Previous work suggests that the integrity of the PWM shows changes in individuals with amnestic mild cognitive impairment and is further compromised as Alzheimer’s disease progresses. The present study was undertaken to determine the effects of healthy aging on macro-and micro-structural alterations in the PWM. The study characterized in vivo white matter changes in the parahippocampal region that includes the perforant pathway in cognitively healthy young (YNG, n = 21) compared to cognitively healthy older (OLD, n = 21) individuals using volumetry, diffusion tensor imaging (DTI) and tractography. Results demonstrated a significant reduction in PWM volume in old participants, with further indications of reduced integrity of remaining white matter fibers. In logistic regressions, PWM volume, memory performance and DTI indices of PWM integrity were significant indicator variables for differentiating the young and old participants. Taken together, these findings suggest that age-related alterations do occur in the PWM region and may contribute to the normal decline in memory function seen in healthy aging by degrading information flow to the hippocampus.
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- 2012
6. Electron transfer properties of ReO(ECD)
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S. M. Sawtelle, C.M. Murphy, J.E. Anderson, and D.S. Edwards
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chemistry.chemical_classification ,Proton ,Base (chemistry) ,Chemistry ,Ligand ,Inorganic chemistry ,Diethyl ester ,Electron ,Inorganic Chemistry ,Electron transfer ,Crystallography ,Materials Chemistry ,Physical and Theoretical Chemistry ,Cysteine - Abstract
The electron transfer properties of the complex, ReO(ECD), where H 2 ECD is N , N ′-1,2-ethylenediylbis- L -cysteine, diethyl ester, are reported. The results of this study will demonstrate that ReO(ECD) has an unusual reductive electron transfer mechanism, in that the addition of one electron to this complex results in the loss of H /sd from the ligand. This corresponds to the net loss of a proton (H + ) from the complex and hence the product of the reduction is the same as that obtained by the reaction of a base with ReO(ECD) to form [ReO(ECD)] − .
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- 1994
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7. Influence of exposure intensity on the efficiency and speed of transmission of Foot-and-mouth disease
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Soren Alexandersen, Melvyn Quan, I. Esteves, S. Durand, Z. Zhang, C.M. Murphy, and C. Doel
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Veterinary medicine ,Time Factors ,Swine ,Air Microbiology ,Thyroid Gland ,Sheep Diseases ,Biology ,Severity of Illness Index ,Pathology and Forensic Medicine ,Incubation period ,law.invention ,Species Specificity ,law ,medicine ,Disease Transmission, Infectious ,Animals ,Viremia ,Incubation ,Cells, Cultured ,Subclinical infection ,Inhalation exposure ,Swine Diseases ,Inhalation Exposure ,Sheep ,General Veterinary ,Foot-and-mouth disease ,Reverse Transcriptase Polymerase Chain Reaction ,Outbreak ,Viral Load ,medicine.disease ,biology.organism_classification ,Virology ,Housing, Animal ,Transmission (mechanics) ,Foot-and-Mouth Disease Virus ,Foot-and-Mouth Disease ,Cattle ,Foot-and-mouth disease virus - Abstract
Foot-and-mouth disease virus (FMDV) can be spread by direct animal-to-animal contact, indirect contact facilitated by contaminated materials or by airborne spread. The rate of spread and the incubation period, as well as the severity of disease, depends on many variables including the dose received, the route of introduction, the virus strain, the animal species and the conditions under which the animals are kept. Quantitative data related to these variables are needed if model predictions are to be used in practical disease control. This experimental study quantifies the risk of transmission of FMDV in pigs exposed by contact, sheep exposed by indirect contact with pigs and sheep exposed to airborne FMDV. Groups of pigs were inoculated with the FMDV O UKG 34/2001 strain and susceptible pigs were then exposed to the inoculated animals at different stages of the infection cycle. The mean incubation period in the susceptible pigs ranged from 1 to 10 days. The length of the incubation period, severity of clinical disease and efficiency of spread were related to dose (i.e. infectiousness of source and intensity of contact). Low intensity transmission increased the proportion of subclinical or abortive infections. Local conditions are important in the efficiency and speed of transmission of FMDV. The results of the experiments described above suggest that transmission is frequency dependent rather than density dependent. The sheep experiments provided further evidence that development of infection and clinical disease is dependent upon local conditions. Dose, infectiousness, intensity of contact and local factors are thus important determinants for the outcome of an initial outbreak and must be truthfully accounted for in mathematical models of epidemiological spread.
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- 2008
8. Determinants of early foot-and-mouth disease virus dynamics in pigs
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Melvyn Quan, Soren Alexandersen, Z. Zhang, and C.M. Murphy
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Injections, Intradermal ,Swine ,viruses ,Dose-Response Relationship, Immunologic ,Viremia ,Virus Replication ,Virus ,Pathology and Forensic Medicine ,In vivo ,medicine ,Disease Transmission, Infectious ,Animals ,Swine Diseases ,General Veterinary ,biology ,Foot-and-mouth disease ,Inoculation ,Reverse Transcriptase Polymerase Chain Reaction ,virus diseases ,medicine.disease ,biology.organism_classification ,Virology ,Viral replication ,Foot-and-Mouth Disease Virus ,Foot-and-Mouth Disease ,Immunology ,Injections, Intravenous ,RNA, Viral ,Female ,Foot-and-mouth disease virus ,Viral load - Abstract
This paper provides a quantitative description of the early infectious process in pigs experimentally infected with foot-and-mouth disease virus (FMDV), obtained by dose-dependent, time course studies of viral load in serum. Pigs were inoculated by the intravenous or intradermal/subcutaneous route with FMDV and housed together in groups or individually. The effects of dose, inoculation route and exposure intensity on the replication of FMDV in vivo and the development of disease were studied. It was shown that the higher the dose, the shorter was the time to the start of active viraemia and to the onset of clinical signs. Exposure intensity and housing conditions influenced the viral dynamics of FMDV. Increasing the exposure intensity, by increasing the number of infected pigs housed together, had the effect of synchronizing the infection and reducing the variance in the start of active viraemia. Increasing the number of pigs housed together also increased the interaction between the pigs and the activity of individual pigs, which had the effect of shortening the time to the onset of clinical signs such as vesicle formation. Intradermal inoculation was more effective than intravenous inoculation for transmitting FMDV to pigs, resulting in shorter times to the start of active viraemia and in higher clinical scores.
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- 2004
9. Changes in energy metabolism and metabolite patterns of obese rats after application of dexfenfluramine
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U. Frenz, C.M. Murphy, R. Noack, and M. Boschmann
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Male ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Clinical Biochemistry ,Toxicology ,Biochemistry ,Behavioral Neuroscience ,chemistry.chemical_compound ,Eating ,Lipid oxidation ,Valine ,Internal medicine ,Fenfluramine ,medicine ,Animals ,Obesity ,Rats, Wistar ,Biological Psychiatry ,Pharmacology ,Glycogen ,Dose-Response Relationship, Drug ,Chemistry ,Insulin ,Body Weight ,Dexfenfluramine ,Rats ,Respiratory quotient ,Endocrinology ,Anorectic ,Leucine ,Energy Metabolism ,medicine.drug - Abstract
Serotonergic neuronal networks are important for food intake and body weight regulation. Dexfenfluramine (dF), a serotonin releaser and reuptake inhibitor, was used to investigate changes in food intake, body weight development, energy expenditure, respiratory quotient, and substrate oxidation rates for 12 days. Rats, which had been made obese by early postnatal overfeeding, received an energy-controlled mash diet and water ad lib and were intraperitoneally injected daily with either saline, 5 or 10 mg dF/kg. Compared to controls, food intake, body weight development, and energy expenditure were decreased in a dose-dependent manner, especially during the first 6 days. Lipid oxidation was increased while oxidation of carbohydrates was decreased. Pair-feeding experiments over 2 days revealed that this was not solely a result of diminished food intake but also an additional metabolic effect of dF, different from its anorectic effect. At the end of these experiments, plasma glucose and liver glycogen were unchanged after dF, but plasma free fatty acids were significantly decreased. Insulin-sensitivity was probably improved, indicated by decreased insulin levels and increases in muscle glycogen contents and activities of muscle pyruvate kinase. Liver-glutamine and contents of valine, leucine, and isoleucine in the muscle were significantly decreased after dF-treatment, the latter indicating a diminished proteolysis. The plasma tryptophan/large neutral amino acids ratio of the dF-rats was unchanged but that of the paired-fed rats was changed, despite similar changes in food intake. It is concluded that both increased oxidation of endogenous fat and reduced food intake could mediate the body weight reducing effect of dF.
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- 1996
10. Delivering an Educational Model for Allergic Immunotherapy
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C.M. Murphy
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Educational model ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Immunology ,medicine ,Immunology and Allergy ,Medical physics ,Immunotherapy ,business - Published
- 2011
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11. 43IMPROVED IN VITRO DEVELOPMENT OF PORCINE NUCLEAR TRANSFER EMBRYOS WITH 6-DMAP FOLLOWING FUSION
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Liangxue Lai, G.-S. Im, C.M. Murphy, Zhonghua Liu, R.S. Prather, and Yanhong Hao
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medicine.medical_specialty ,Embryogenesis ,Theriogenology ,Embryo culture ,Reproductive technology ,Biology ,Cryopreservation ,Transgenesis ,Andrology ,Endocrinology ,medicine.anatomical_structure ,Reproductive Medicine ,Immunology ,Genetics ,medicine ,Animal Science and Zoology ,Blastocyst ,Molecular Biology ,Fertilisation ,Developmental Biology ,Biotechnology - Abstract
Although nuclear transfer (NT) has successfully produced cloned piglets, the development to blastocyst and to term is still low. Activation of the NT embryos is one of the key factors to improve the developmental ability of porcine NT embryos. Electric pulses as well as chemicals have been used to activate porcine NT embryos. This study was conducted to investigate the effect of continued activation following fusion pulses on in vitro development of porcine NT Embryos. Oocytes derived from a local abattoir were matured for 42 to 44h and enucleated. Ear skin cells were obtained from a 4-day-old transgenic pig transduced with eGFP recombinant retrovirus. Enucleated oocytes were reconstructed and cultured in PZM-3 in a gas atmosphere of 5% CO2 in air. Cleavage and blastocyst developmental rates were assessed under a stereomicroscope on Day 3 or 6. Blastocysts were stained with 5μg of Hoechst 33342 and total cell number was determined with an epifluorescent microscope. In Experiment 1, oocytes were activated with two 1.2kV/cm for 30μs (E) in 0.3M mannitol supplemented with either 0.1 or 1.0mM Ca2+. In each treatment, activated oocytes were divided into three groups. The first group was control (E). Other two groups were exposed to either ionomycin and 6-DMAP (E+I+D) or 6-DMAP (E+D) immediately after the electric pulses. In Experiment 2, fusion was conducted by using 1.0mM Ca2+ in the fusion medium. Fused NT embryos were divided into three treatments. NT embryos were fused and activated simultaneously with electric pulse as a control (C); the second group was treated with 6-DMAP immediately after fusion treatment (D0); and the third group was treated with 6-DMAP at 20min (D20) after fusion. In experiment 1, for 0.1mM Ca2+, developmental rates to the blastocyst stage for E, E+I+D or E+D were 12.5, 26.7 and 22.5%, respectively. For 1.0mM Ca2+, developmental rates to the blastocyst stage were 11.4, 28.3 and 35.6%, respectively. The activated oocytes treated with 6-DMAP following the electric pulses by using 1.0mM Ca2+ in fusion medium had higher (P
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- 2004
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12. 59. Quantitative and modelling aspects of foot-and-mouth disease virus infection in pigs
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Melvyn Quan, Louise Matthews, J. Knight, Z. Zhang, C.M. Murphy, Soren Alexandersen, and Mej Woolhouse
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General Veterinary ,biology ,business.industry ,Medicine ,Foot-and-mouth disease virus ,biology.organism_classification ,business ,Virology - Published
- 2003
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13. 30. Measurement of cytokine mRNA in pigs infected with foot-and-mouth-disease virus using quantitative real-time RT-PCR
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Soren Alexandersen, C.M. Murphy, and Z. Zhang
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Real-time polymerase chain reaction ,General Veterinary ,biology ,Cytokine mrna ,Foot-and-mouth disease virus ,biology.organism_classification ,Virology - Published
- 2002
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14. Brief-Partially Fluorinated Esters and Ethers as Temperature-Stable Liquids
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P.D. Faurote, C.M. Henderson, C.M. Murphy, J.G. O'Rear, and H. Ravner
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General Engineering - Published
- 1956
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15. The Urgency of Now: Rethinking and Improving Assessment Practices in Medical Education Programs.
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Holmboe ES, Osman NY, Murphy CM, and Kogan JR
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- Humans, Clinical Competence, Program Evaluation, Quality of Health Care, Education, Medical, Physicians
- Abstract
Assessment is essential to professional development. Assessment provides the information needed to give feedback, support coaching and the creation of individualized learning plans, inform progress decisions, determine appropriate supervision levels, and, most importantly, help ensure patients and families receive high-quality, safe care in the training environment. While the introduction of competency-based medical education has catalyzed advances in assessment, much work remains to be done. First, becoming a physician (or other health professional) is primarily a developmental process, and assessment programs must be designed using a developmental and growth mindset. Second, medical education programs must have integrated programs of assessment that address the interconnected domains of implicit, explicit and structural bias. Third, improving programs of assessment will require a systems-thinking approach. In this paper, the authors first address these overarching issues as key principles that must be embraced so that training programs may optimize assessment to ensure all learners achieve desired medical education outcomes. The authors then explore specific needs in assessment and provide suggestions to improve assessment practices. This paper is by no means inclusive of all medical education assessment challenges or possible solutions. However, there is a wealth of current assessment research and practice that medical education programs can use to improve educational outcomes and help reduce the harmful effects of bias. The authors' goal is to help improve and guide innovation in assessment by catalyzing further conversations., (Copyright © 2023 by the Association of American Medical Colleges.)
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- 2023
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16. Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness.
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Ching CRK, Gutman BA, Sun D, Villalon Reina J, Ragothaman A, Isaev D, Zavaliangos-Petropulu A, Lin A, Jonas RK, Kushan L, Pacheco-Hansen L, Vajdi A, Forsyth JK, Jalbrzikowski M, Bakker G, van Amelsvoort T, Antshel KM, Fremont W, Kates WR, Campbell LE, McCabe KL, Craig MC, Daly E, Gudbrandsen M, Murphy CM, Murphy DG, Murphy KC, Fiksinski A, Koops S, Vorstman J, Crowley TB, Emanuel BS, Gur RE, McDonald-McGinn DM, Roalf DR, Ruparel K, Schmitt JE, Zackai EH, Durdle CA, Goodrich-Hunsaker NJ, Simon TJ, Bassett AS, Butcher NJ, Chow EWC, Vila-Rodriguez F, Cunningham A, Doherty J, Linden DE, Moss H, Owen MJ, van den Bree M, Crossley NA, Repetto GM, Thompson PM, and Bearden CE
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- Adolescent, Adult, Atrophy pathology, Brain Mapping, Case-Control Studies, Child, DiGeorge Syndrome complications, Female, Humans, Hypertrophy pathology, Magnetic Resonance Imaging, Male, Middle Aged, Psychotic Disorders complications, Young Adult, Brain pathology, DiGeorge Syndrome pathology, Mental Disorders pathology, Psychotic Disorders pathology
- Abstract
Objective: 22q11.2 deletion syndrome (22q11DS) is among the strongest known genetic risk factors for schizophrenia. Previous studies have reported variable alterations in subcortical brain structures in 22q11DS. To better characterize subcortical alterations in 22q11DS, including modulating effects of clinical and genetic heterogeneity, the authors studied a large multicenter neuroimaging cohort from the ENIGMA 22q11.2 Deletion Syndrome Working Group., Methods: Subcortical structures were measured using harmonized protocols for gross volume and subcortical shape morphometry in 533 individuals with 22q11DS and 330 matched healthy control subjects (age range, 6-56 years; 49% female)., Results: Compared with the control group, the 22q11DS group showed lower intracranial volume (ICV) and thalamus, putamen, hippocampus, and amygdala volumes and greater lateral ventricle, caudate, and accumbens volumes (Cohen's d values, -0.90 to 0.93). Shape analysis revealed complex differences in the 22q11DS group across all structures. The larger A-D deletion was associated with more extensive shape alterations compared with the smaller A-B deletion. Participants with 22q11DS with psychosis showed lower ICV and hippocampus, amygdala, and thalamus volumes (Cohen's d values, -0.91 to 0.53) compared with participants with 22q11DS without psychosis. Shape analysis revealed lower thickness and surface area across subregions of these structures. Compared with subcortical findings from other neuropsychiatric disorders studied by the ENIGMA consortium, significant convergence was observed between participants with 22q11DS with psychosis and participants with schizophrenia, bipolar disorder, major depressive disorder, and obsessive-compulsive disorder., Conclusions: In the largest neuroimaging study of 22q11DS to date, the authors found widespread alterations to subcortical brain structures, which were affected by deletion size and psychotic illness. Findings indicate significant overlap between 22q11DS-associated psychosis, idiopathic schizophrenia, and other severe neuropsychiatric illnesses.
- Published
- 2020
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