12 results on '"Bindhu Varughese"'
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2. Charging Behavior of Single-Stranded DNA Polyelectrolyte Brushes
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Gang Shen, Mariafrancis A. Gaspar, Rastislav Levicky, Napoleon Tercero, Kenneth L. Shepard, and Bindhu Varughese
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Polymers ,Surface Properties ,Oligonucleotides ,DNA, Single-Stranded ,Ionic bonding ,Nanotechnology ,Biochemistry ,Ruthenium ,Article ,Catalysis ,Electrolytes ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Monolayer ,Electrochemistry ,Organometallic Compounds ,chemistry.chemical_classification ,Oligonucleotide ,General Chemistry ,Polymer ,Polyelectrolyte ,chemistry ,Ionic strength ,Chemical physics ,Counterion ,DNA - Abstract
DNA monolayers are widely used in fundamental and applied genomics and are versatile experimental models for elucidating the behavior of charged polymers at interfaces. The physical behavior of these systems is to a large extent governed by their internal ionic microenvironment, which is investigated here for layers of end-tethered, single-stranded DNA oligonucleotides (DNA brushes). Retention of counterions by the DNA brush manifests as lowered susceptibility of the interfacial capacitance to external salt conditions. A physical model based on concepts adapted from polymer science was used to further elucidate the connection between monolayer organization and its charging behavior. The data indicate a reorganization of the monolayer with changes in ionic strength and strand coverage that is consistent with that expected for a polyelectrolyte brush. A method for electrochemical quantification of strand coverage, based on shift of reduction potential for redox counterions associated with the DNA monolayer, is also described. These results provide guidance for development of label-free electrochemical diagnostics employing DNA monolayers and formulate a description of monolayer behavior within a polymer science framework.
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- 2006
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3. Quantum-Dot Cellular Automata at a Molecular Scale
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Yuliang Wang, Bindhu Varughese, Sudha Chellamma, Frank Peiris, Marya Lieberman, Craig S. Lent, Gary H. Bernstein, and Gregory L. Snider
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Power gain ,History and Philosophy of Science ,Low power dissipation ,Scale (ratio) ,Quantum dot ,General Neuroscience ,Electronic engineering ,Quantum dot cellular automaton ,Molecular electronics ,Nanotechnology ,General Biochemistry, Genetics and Molecular Biology ,Cellular automaton ,Quantum cellular automaton - Abstract
Quantum-dot cellular automata (QCA) is a scheme for molecular electronics in which information is transmitted and processed through electrostatic interactions between charges in an array of quantum dots. QCA wires, majority gates, clocked cell operation, and (recently) true power gain between QCA cells has been demonstrated in a metal-dot prototype system at cryogenic temperatures. Molecular QCA offers very high device densities, low power dissipation, and ways to directly integrate sensors with QCA logic and memory elements. A group of faculty at Notre Dame has been working to implement QCA at the size scale of molecules, where room-temperature operation is theoretically predicted. This paper reviews QCA theory and the experimental measurements in metal-dot QCA systems, and describes progress toward making QCA molecules and working out surface attachment chemistry compatible with QCA operation.
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- 2006
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4. Structural and magnetic characterization of norbornene–deuterated norbornene dicarboxylic acid diblock copolymers doped with iron oxide nanoparticles
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Xin Zhang, Robert M. Briber, Bindhu Varughese, Pinar Akcora, and Peter Kofinas
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chemistry.chemical_classification ,Materials science ,Polymers and Plastics ,Organic Chemistry ,Oxide ,Nanoparticle ,Polymer ,Small-angle neutron scattering ,chemistry.chemical_compound ,chemistry ,Volume fraction ,Polymer chemistry ,Materials Chemistry ,Physical chemistry ,Magnetic nanoparticles ,Superparamagnetism ,Norbornene - Abstract
A series of iron oxide doped norbornene (NOR)/deuterated norbornene dicarboxylic acid (NORCOOH) diblock copolymers were synthesized and characterized by X-ray photoelectron spectroscopy (XPS), small angle neutron scattering (SANS) and superconducting quantum interference device (SQUID) experiments. g-Fe2O3 nanoparticles were synthesized within the microdomains of diblock copolymers with volume fractions of NOR/NORCOOH 0.64/0.36, 0.50/0.50 and 0.40/0.60. A spherical nanoparticle morphology was displayed in the polymer with 0.64/0.36 volume fraction. Polymers with 0.50/0.50 and 0.40/0.60 volume fractions exhibited interconnected metal oxide nanostructures. The observed changes in the shape and peak positions of the small-angle neutron scattering profiles of polymers after metal doping were related to the scattering from the metal oxide particles and to the possible deformed morphologies due to the strong interparticle interactions between metal particles, which may influence the polymer microphase separation. The combined scattering from both polymer domains and magnetic particles was depicted in SANS profiles of metal oxide doped polymers. g-Fe2O3 containing block copolymers were superparamagnetic at room temperature. An increase in the blocking temperature (Tb) of interconnected nanoparticles was observed and was related to the interparticle interactions, which depends on the average distance (d) between particles and individual particle diameter (2R). The sample with volume fraction of 0.4/0.6 have the lowest d/(2R) ratio and exhibit the highest Tb at 115 K. q 2005 Elsevier Ltd. All rights reserved.
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- 2005
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5. Fermi level alignment in self-assembled molecular layers: the effect of coupling chemistry
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Bindhu Varughese, Steven W. Robey, Jawad Naciri, James M. Tour, Christopher D. Zangmeister, Janice Reutt-Robey, Yuxing Yao, R. D. Van Zee, James G. Kushmerick, and Bo Xu
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Valence (chemistry) ,Chemistry ,Isocyanide ,Binding energy ,Fermi level ,Spectral line ,Surfaces, Coatings and Films ,symbols.namesake ,chemistry.chemical_compound ,X-ray photoelectron spectroscopy ,Phenylene ,Chemical physics ,Monolayer ,Materials Chemistry ,symbols ,Physical and Theoretical Chemistry ,Atomic physics - Abstract
Photoelectron spectroscopy was used to explore changes in Fermi level alignment, within the pi-pi* gap, arising from modifications to the coupling chemistry of conjugated phenylene ethynylene oligomers to the Au surface. Self-assembled monolayers were formed employing either thiol (4,4'-ethynylphenyl-1-benzenethiol or OPE-T) or isocyanide (4,4'-ethynylphenyl-1-benzeneisocyanide or OPE-NC) coupling. The electronic density of states in the valence region of the two systems are nearly identical with the exception of a shift to higher binding energy by about 0.5 eV for OPE-NC. Corresponding shifts appear in C(1s) spectra and in the threshold near E(F). The lack of change in the optical absorption suggests that a rigid shift of the Fermi level within the pi-pi* gap is the major effect of modifying the coupling chemistry. Qualitative consideration of bonding in each case is used to suggest the influence of chemisorption-induced charge transfer as a potential explanation. Connections to other theoretical and experimental work on the effects of varying coupling chemistries are also discussed.
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- 2006
6. Magnetic iron oxide nanoparticles for biorecognition: evaluation of surface coverage and activity
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Bindhu Varughese, Douglas S. English, Lyle Isaacs, Sheryl H. Ehrman, Xiang Wang, and Isaac Koh
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Materials science ,Surface Properties ,Nanoparticle ,Nanotechnology ,Ligands ,Ferric Compounds ,Antibodies ,chemistry.chemical_compound ,Magnetics ,Antibody Specificity ,Materials Chemistry ,Molecule ,Physical and Theoretical Chemistry ,Fluorescent Dyes ,chemistry.chemical_classification ,Biomolecule ,Silane ,Surfaces, Coatings and Films ,Nanostructures ,Spectrometry, Fluorescence ,chemistry ,Chemical engineering ,Covalent bond ,Magnetic nanoparticles ,Glutaraldehyde ,Iron oxide nanoparticles - Abstract
Modifying the surfaces of magnetic nanoparticles (MNPs) by the covalent attachment of biomolecules will enable their implementation as contrast agents for magnetic resonance imaging or as media for magnetically assisted bioseparations. In this paper we report both the surface coverage and the activity of IgG antibodies on MNPs. The antibodies were immobilized on gamma-Fe2O3 nanoparticles by conventional methods using aminopropyltriethoxy silane and subsequent activation by glutaraldehyde. Novel fluorescence methods were used to provide a quantitative evaluation of this well-known approach. Our results show that surface coverage can be stoichiometrically adjusted with saturated surface coverage occurring at approximately 36% of the theoretical limit. The saturated surface coverage corresponds to 34 antibody molecules bound to an average-sized MNP (32 nm diameter). We also show that the immobilized antibodies retain approximately 50% of their binding capacity at surface-saturated levels.
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- 2006
7. Morphology selected molecular architecture: acridine carboxylic acid monolayers on Ag (111)
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Bindhu Varughese, Bo Xu, Diane Evans, and Janice Reutt-Robey
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chemistry.chemical_classification ,Morphology (linguistics) ,Carboxylic acid ,Surfaces, Coatings and Films ,chemistry.chemical_compound ,Crystallography ,chemistry ,X-ray photoelectron spectroscopy ,Physical vapor deposition ,Acridine ,Monolayer ,Materials Chemistry ,Molecule ,Physical and Theoretical Chemistry - Abstract
The molecular architecture of acridine-9-carboxylic acid (ACA) grown on Ag (111) by physical vapor deposition was characterized by using UHV-STM and XPS. At lower coverage, ACA molecules exist in a 2-d gas phase on the surface at room temperature. With increased coverage (0.4 ML), ACA molecules self-organize into distinctive adlayer structures that are correlated with underlying substrate morphology. On step-free Ag (111) regions, ACA molecules form large islands in coexistence with the 2-d ACA gas. These islands are commensurate with the Ag (111) substrate, indexed as (4 0, 2 4) in matrix notation, and can exceed 100 nm in size. There are two nonequivalent ACA molecules in each unit cell. XPS core level measurements reveal a hydrogen-bonding interaction between ACA molecules, with the ring nitrogen acting as the H-bond acceptor and the carboxyl proton acting as the H-bond donor. A structural model for this phase consists of chains of ACA molecules linked by head-to-tail hydrogen bonds along the substrate [10] direction. Alternating ACA tilting angles account for the two nonequivalent ACA molecules and the observed high packing density. Completely different molecular arrangements are observed on Ag (111) surface regions roughened by a higher density of crystallographic steps (terrace widthsor = 6 nm). Pairs of ACA molecules arrange in a zigzag pattern in a (12 2, 6 5) overlayer structure with a diluted packing density. The structural model for this lower density phase consists of carboxyl-carboxyl linked ACA dimers in a flat-lying molecular orientation.
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- 2006
8. Bis(phenyl)dirhodium(III) Caprolactamate: A Dinuclear Paddlewheel Complex with No Metal−Metal Bond
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Joffrey Wolf, Michael P. Doyle, Bindhu Varughese, Peter Y. Zavalij, and Jason M. Nichols
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Models, Molecular ,Chemistry ,Stereochemistry ,Molecular Conformation ,chemistry.chemical_element ,Cleavage (crystal) ,General Chemistry ,Crystal structure ,Crystallography, X-Ray ,Biochemistry ,Oxygen ,Catalysis ,Colloid and Surface Chemistry ,Transfer agent ,X-ray photoelectron spectroscopy ,Metals ,Polymer chemistry ,Organometallic Compounds ,Caprolactam ,Metal metal ,Oxidation-Reduction - Abstract
The first unambiguous characterization of a stable dirhodium(III) paddlewheel complex 1 is reported. Complex 1 is prepared via the copper-catalyzed aerobic oxidation of 2 in 77% isolated yield. Comparison of the X-ray crystal structure, visible, and X-ray photoelectron spectroscopy of 1, 2, and 3 indicate a cleavage of the Rh−Rh bond in 1. The oxidation of 2 to 1 is proposed to occur through the intermediacy of 3 with the Cu(II)/Cu(I) couple with oxygen as a terminal oxidant and NaBPh4 as a phenyl transfer agent.
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- 2007
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9. Microstructure and phase control in Bi–Fe–O multiferroic nanocomposite thin films
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Manfred Wuttig, Bindhu Varughese, S. Fujino, Lourdes Salamanca-Riba, Ichiro Takeuchi, T. Hasegawa, S.-H. Lim, H. Sugaya, Samuel E. Lofland, and Makoto Murakami
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Crystallography ,Magnetization ,Materials science ,Nanocomposite ,Lattice constant ,Physics and Astronomy (miscellaneous) ,Transmission electron microscopy ,Phase (matter) ,Thin film ,Composite material ,Microstructure ,Ferroelectricity - Abstract
We report on the controlled multiphase thin film growth in the Bi–Fe–O system. By varying the deposition oxygen pressure, the dominant phase formed in the film continuously changes from ferroelectric BiFeO3 to a mixture of α-Fe2O3 and ferromagnetic γ-Fe2O3. X-ray diffraction and high-resolution transmission electron microscopy have revealed that epitaxial multiferroic nanocomposites consisting of BiFeO3 and Fe2O3 are formed when the deposition pressure is ≈5mTorr. In order to investigate the previously reported anomalous enhancement in magnetization in BiFeO3, we have fabricated a thickness gradient pure BiFeO3 film. The out-of-plane lattice constant was found to increase continuously as the thickness is decreased from 300 to 5nm, but no significant enhancement in magnetization was observed.
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- 2006
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10. Magnetic Iron Oxide Nanoparticles for Biorecognition: Evaluation of Surface Coverage and Activity.
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Isaac Koh, Xiang Wang, Bindhu Varughese, Lyle Isaacs, Sheryl H. Ehrman, and Douglas S. English
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- 2006
- Full Text
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11. Morphology Selected Molecular Architecture: Acridine Carboxylic Acid Monolayers on Ag (111).
- Author
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Bo Xu, Bindhu Varughese, Diane Evans, and Janice Reutt-Robey
- Subjects
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MOLECULAR dynamics , *CARBOXYLIC acids , *MONOMOLECULAR films , *HYDROGEN - Abstract
The molecular architecture of acridine-9-carboxylic acid (ACA) grown on Ag (111) by physical vapor deposition was characterized by using UHV-STM and XPS. At lower coverage, ACA molecules exist in a 2-d gas phase on the surface at room temperature. With increased coverage (>0.4 ML), ACA molecules self-organize into distinctive adlayer structures that are correlated with underlying substrate morphology. On step-free Ag (111) regions, ACA molecules form large islands in coexistence with the 2-d ACA gas. These islands are commensurate with the Ag (111) substrate, indexed as (4 0, 2 4) in matrix notation, and can exceed 100 nm in size. There are two nonequivalent ACA molecules in each unit cell. XPS core level measurements reveal a hydrogen-bonding interaction between ACA molecules, with the ring nitrogen acting as the H-bond acceptor and the carboxyl proton acting as the H-bond donor. A structural model for this phase consists of chains of ACA molecules linked by head-to-tail hydrogen bonds along the substrate [11̄0] direction. Alternating ACA tilting angles account for the two nonequivalent ACA molecules and the observed high packing density. Completely different molecular arrangements are observed on Ag (111) surface regions roughened by a higher density of crystallographic steps (terrace widths ≤6nm). Pairs of ACA molecules arrange in a zigzag pattern in a (12 2, 6 5) overlayer structure with a diluted packing density. The structural model for this lower density phase consists of carboxyl−carboxyl linked ACA dimers in a flat-lying molecular orientation. [ABSTRACT FROM AUTHOR]
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- 2006
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12. Pt–Cu Core–Shell and Alloy Nanoparticles for Heterogeneous NOx Reduction: Anomalous Stability and Reactivity of a Core–Shell NanostructureThis work was supported by the U.S. Department of Energy's Oak Ridge National Lab under the Advanced Reciprocating Engine Systems Program (Tim Theiss, Program Manager) and the NSF (CHE/DMR).
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Shenghu Zhou, Bindhu Varughese, Bryan Eichhorn, Greg Jackson, and Kevin McIlwrath
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- 2005
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