34 results on '"Beining, Yang"'
Search Results
2. Meta-structure-based graph attention networks.
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Jin Li, Qingyu Sun, Feng Zhang, and Beining Yang
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- 2024
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3. GC-Bench: An Open and Unified Benchmark for Graph Condensation.
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Qingyun Sun, Ziying Chen, Beining Yang, Cheng Ji, Xingcheng Fu, Sheng Zhou 0004, Hao Peng 0001, Jianxin Li 0002, and Philip S. Yu
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- 2024
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4. Two Trades is not Baffled: Condensing Graph via Crafting Rational Gradient Matching.
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Tianle Zhang, Yuchen Zhang, Kun Wang, Kai Wang 0036, Beining Yang, Kaipeng Zhang, Wenqi Shao, Ping Liu 0004, Joey Tianyi Zhou, and Yang You 0001
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- 2024
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5. Study on antimicrobial activity of sturgeon skin mucus polypeptides (Rational Design, Self-Assembly and Application)
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Beining Yang, Wei Li, Yuxuan Mao, Yuanhui Zhao, Yong Xue, Xinxing Xu, Yilin Zhao, and Kang Liu
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Sturgeon epidermal mucus ,Antimicrobial peptide ,Self-assembly ,Molecular design ,Antimicrobial activity ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Despite the favorable biocompatibility of natural antimicrobial peptides (AMPs), their scarcity limits their practical application. Through rational design, the activity of AMPs can be enhanced to expand their application. In this study, we selected a natural sturgeon epidermal mucus peptide, AP-16 (APATPAAPALLPLWLL), as the model molecule and studied its conformational regulation and antimicrobial activity through amino acid substitutions and N-terminal lipidation. The structural and morphological transitions of the peptide self-assemblies were investigated using circular dichroism and transmission electron microscopy. Following amino acid substitution, the conformation of AL-16 (AKATKAAKALLKLWLL) did not change. Following N-terminal alkylation, the C8-AL-16 and C12-AL-16 conformations changed from random coil to β-sheet or α-helix, and the self-assembly changed from nanofibers to nanospheres. AL-16, C8-AL-16, and C8-AL-16 presented significant antimicrobial activity against Pseudomonas and Shewanella at low concentrations. N-terminal alkylation effectively extended the shelf life of Litopenaeus vannamei. These results support the application of natural AMPs.
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- 2024
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6. The possible neural mechanism of neuropathic pain evoked by motor imagery in pediatric patients with complete spinal cord injury: A preliminary brain structure study based on VBM
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Ling Wang, Xin Chen, Weimin Zheng, Yanhui Yang, Beining Yang, Qian Chen, Xuejing Li, Tengfei Liang, Baowei Li, Yongsheng Hu, Jubao Du, Jie Lu, and Nan Chen
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Motor imagery ,Neuropathic pain ,Pediatric complete spinal cord injury ,Magnetic resonance imaging ,Voxel based morphometry ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
In this study, we observed pediatric complete spinal cord injury (CSCI) patients receiving MI training and divided them into different groups according to the effect of motor imagery (MI) training on neuropathic pain (NP). Then, we retrospectively analysed the differences in brain structure of these groups before the MI training, identifying brain regions that may predict the effect of MI on NP. Thirty pediatric CSCI patients were included, including 12 patients who experienced NP during MI and 18 patients who did not experience NP during MI according to the MI training follow‐up. The 3D high-resolution T1-weighted images of all subjects were obtained using a 3.0 T MRI system before MI training. A two-sample t-test was performed to evaluate the differences in gray matter volume (GMV) between patients who experienced NP and those who did not experience NP during MI. Receiver operating characteristic (ROC) analysis was performed to compute the sensitivity and specificity of the imaging biomarkers for the effect of MI on NP in pediatric CSCI patients. MI evoked NP in some of the pediatric CSCI patients. Compared with patients who did not experience NP, patients who experienced NP during MI showed larger GMV in the right primary sensorimotor cortex (PSMC) and insula. When using the GMV of the right PSMC and insula in combination as a predictor, the area under the curve (AUC) reached 0.824. Our study demonstrated that MI could evoke NP in some pediatric CSCI patients, but not in others. The individual differences in brain reorganization of the right PSMC and insula may contribute to the different effects of MI on NP. Moreover, the GMV of the right PSMC and insula in combination may be an effective indicator for screening pediatric CSCI patients before MI training therapy.
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- 2024
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7. Self-Organization Preserved Graph Structure Learning with Principle of Relevant Information.
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Qingyun Sun, Jianxin Li 0002, Beining Yang, Xingcheng Fu, Hao Peng 0001, and Philip S. Yu
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- 2023
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8. The gray matter atrophy and related network changes occur in the higher cognitive region rather than the primary sensorimotor cortex after spinal cord injury
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Xin Chen, Ling Wang, Weimin Zheng, Yanhui Yang, Beining Yang, Yongsheng Hu, Jubao Du, Xuejing Li, Jie Lu, and Nan Chen
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Spinal cord injury ,Gray matter volume ,Functional connectivity ,Cognitive function ,Voxel-based morphometry ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Objective This study used functional magnetic resonance imaging (fMRI) to explore brain structural and related network changes in patients with spinal cord injury (SCI). Methods Thirty-one right-handed SCI patients and 31 gender- and age-matched healthy controls (HC) were included. The gray matter volume (GMV) changes in SCI patients were observed using voxel-based morphometry (VBM). Then, these altered gray matter clusters were used as the regions of interest (ROIs) for whole-brain functional connectivity (FC) analysis to detect related functional changes. The potential association between GMV and FC values with the visual analog scale (VAS), the American Spinal Injury Association (ASIA) score, and the course of injuries was investigated through partial correlation analysis. Results GMV of the frontal, temporal, and insular cortices was lower in the SCI group than in the HC group. No GMV changes were found in the primary sensorimotor area in the SCI group. Besides, the altered FC regions were not in the primary sensorimotor area but in the cingulate gyrus, supplementary motor area, precuneus, frontal lobe, and insular. Additionally, some of these altered GMV and FC regions were correlated with ASIA motor scores, indicating that higher cognitive regions can affect motor function in SCI patients. Conclusions This study demonstrated that gray matter and related network reorganization in patients with SCI occurred in higher cognitive regions. Future rehabilitation strategies should focus more on cognitive functions.
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- 2023
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9. Adaptive Subgraph Neural Network With Reinforced Critical Structure Mining.
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Jianxin Li 0002, Qingyun Sun, Hao Peng 0001, Beining Yang, Jia Wu 0001, and Philip S. Yu
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- 2023
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10. Does Graph Distillation See Like Vision Dataset Counterpart?
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Beining Yang, Kai Wang 0036, Qingyun Sun, Cheng Ji, Xingcheng Fu, Hao Tang 0005, Yang You 0001, and Jianxin Li 0002
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- 2023
11. Study on treatment of hepatolithiasis using cholangioscopy through percutaneous trans-choledochojejunal anastomotic channel guided by ultrasound
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KONG Xiangyu, LIANG Ting, ZHANG Cheng, HU Hai, TIAN Fuzhou, XIANG Yukai, Zhang Honglei, LÜ Beining, YANG Yulong
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choledochojejunostomy ,hepatolithiasis ,ultrasound-guided percutaneous trans-choledochojejunal anastomotic channel ,cholangioscopy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Surgery ,RD1-811 - Abstract
Objective To investigate the procedure and efficacy in treatment of hepatolithiasis by percutaneous cholangioscopy through choledochojejunal anastomotic channel guided by ultrasound. Methods From June 2021 to January 2022, 6 patients with hepatolithiasis combined with stenosis of both intrahepatic duct and anastomosis after surgery with choledochojejunostomy were included in this study. The treatment including the removal of hepatolithiasis and dilation of intrahepatic duct and anastomotic stoma was performed by soft fiber-optic cholangioscopy through percutaneous trans-choledochojejunal anastomotic channel under ultrasound guidance. Results There were different procedures of channel establishment through percutaneous trans- choledochojejunal anastomosis for 6 cases. The ultrasound-guided percutaneous trans-choledochojejunal anastomotic channel was set up in 3 patients. There were 2 cases with cholangioscopy through percutaneous transhepatic cholangial drainage channel under ultrasound guidance. The other case after fail of percutaneous cholangioscopy was converted to laparotomy which showed choledochojejunal anastomosis located in the back of colon and the establishment of percutaneous trans-choledochojejunal anastomotic channel was done then. The cholangioscopy could reach the left or the right intrahepatic bile duct convenient through the channels for all 6 cases. There were no abdominal bleeding and infection, intestinal fistula, biliary leakage and other short-term complications postoperatively. During 1 to 6 months of follow up, the channels could be passed repeatedly for the procedures for stone removal, and dilation of intrahepatic duct stenosis and anastomotic stenosis. Conclusions The main advantages of percutaneous trans-choledochojejunal anastomotic channel under ultrasound guidance would be minimally invasive, safe, and effective for treatment of hepatolithiasis, intrahepatic duct stenosis and anastomotic stenosis.
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- 2022
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12. Altered functional connectivity between primary motor cortex subregions and the whole brain in patients with incomplete cervical spinal cord injury
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Ling Wang, Weimin Zheng, Beining Yang, Qian Chen, Xuejing Li, Xin Chen, Yongsheng Hu, Lei Cao, Jian Ren, Wen Qin, Yanhui Yang, Jie Lu, and Nan Chen
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incomplete cervical spinal cord injury ,primary motor cortex ,subregion ,gray matter volume ,functional connectivity ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
To investigate the reorganizations of gray matter volume (GMV) in each subregion of primary motor cortex (M1) after incomplete cervical cord injury (ICCI) and to explore the differences in functional connectivity (FC) between the M1 subregions and the whole brain, and further to disclose the potential value of each M1 subregion in motor function rehabilitation of ICCI patients. Eighteen ICCI patients and eighteen age- and gender- matched healthy controls (HCs) were recruited in this study. The 3D high-resolution T1-weighted structural images and resting-state functional magnetic resonance imaging (rs-fMRI) of all subjects were obtained using a 3.0 Tesla MRI system. Based on the Human Brainnetome Atlas, the structural and functional changes of M1 subregions (including A4hf, A6cdl, A4ul, A4t, A4tl, A6cvl) in ICCI patients were analyzed by voxel-based morphometry (VBM) and seed-based FC, respectively. Compared with HCs, no structural changes in the M1 subregions of ICCI patients was detected. However, when compared with HCs, ICCI patients exhibited decreased FC in visual related areas (lingual gyrus, fusiform gyrus) and sensorimotor related areas (primary sensorimotor cortex) when the seeds were located in bilateral A4hf, A4ul, and decreased FC in visual related areas (lingual gyrus, fusiform gyrus) and cognitive related areas (temporal pole) when the seed was located in the left A4t. Moreover, when the seeds were located in the bilateral A6cdl, decreased FC in visual related areas (lingual gyrus, fusiform gyrus, calcarine gyrus) was also observed. Our findings demonstrated that each of the M1 regions had diverse FC reorganizations, which may provide a theoretical basis for the selection of precise stimulation targets, such as transcranial magnetic stimulation (TMS) or transcranial direct current stimulation (tCDS), meanwhile, our results may reveal the possible mechanism of visual feedback and cognitive training to promote motor rehabilitation.
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- 2022
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13. Cerebellum regulating cerebral functional cortex through multiple pathways in complete thoracolumbar spinal cord injury
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Weimin Zheng, Ling Wang, Beining Yang, Qian Chen, Yongsheng Hu, Jubao Du, Xuejing Li, Xin Chen, Wen Qin, Kuncheng Li, Jie Lu, and Nan Chen
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complete thoracolumbar spinal cord injury ,cerebellar subregions ,cerebral cortex ,functional connectivity ,resting state functional magnetic resonance imaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The previous studies have found significant brain structural and functional changes in cerebral regions after spinal cord injury (SCI), but few studies have explored the cerebellar–cerebral circuit changes in SCI. This study aims to study the brain structural changes of cerebellar subregions and its functional connectivity (FC) changes with cerebrum in complete thoracolumbar SCI (CTSCI), and screen out the regions that play relatively important roles in affecting sensorimotor function. Eighteen CTSCI patients and 18 age- and gender-matched healthy controls (HCs) were recruited. Voxel-based morphometry (VBM) was used to characterize the brain structural changes of cerebellar subregions [from the Anatomical Automatic Labeling (AAL116)], seed-based FC was used to evaluate the cerebellar–cerebral FC changes and support vector machine (SVM) analysis was used to search for sensitive imaging indicators. CTSCI patients showed slightly structural atrophy in vermis_3 (p = 0.046) and significantly decreased FC between cerebellum and cerebral sensorimotor-, visual-, cognitive-, and auditory-related regions (cluster-level FWE correction with p < 0.05). Additionally, SVM weight analysis showed that FC values between vermis_10 and right fusiform gyrus had the greatest weight in functional changes of CTSCI. In conclusion, different degrees of structural and functional changes occurred in each subregion of cerebellum following CTSCI, and FC change between vermis_10 and right fusiform gyrus plays the most important role in dysfunction and may become an important neural network index of rehabilitation therapy.
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- 2022
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14. Copper-Promoted Aerobic Oxidative [3+2] Cycloaddition Reactions of N,N-Disubstituted Hydrazines with Alkynoates: Access to Substituted Pyrazoles
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Xiaoying Zou, Lvyin Zheng, Xiaoya Zhuo, Yumei Zhong, Yingying Wu, Beining Yang, Qifang He, and Wei Guo
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Organic Chemistry - Published
- 2023
15. DBU-Promoted Deaminative Thiolation of 1H-Benzo[d]imidazol-2-amines and Benzo[d]oxazol-2-amines
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Lvyin Zheng, Weijie Mei, Xiaoying Zou, Yumei Zhong, Yingying Wu, Lei Deng, Yihan Wang, Beining Yang, and Wei Guo
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Organic Chemistry - Published
- 2022
16. <scp>DNA</scp> damage‐inducible transcript 3 deficiency promotes bone resorption in murine periodontitis models
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Yao Luo, Beining Yang, Wei Dong, Wenqian Yu, Meie Jia, and Jiawei Wang
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Periodontics - Published
- 2023
17. Engineered drug delivery nanosystems for tumor microenvironment normalization therapy
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Beining Yang, Fanze Meng, Jihao Zhang, Kerun Chen, Siyu Meng, Kaiyong Cai, Yanli Zhao, Liangliang Dai, and School of Chemistry, Chemical Engineering and Biotechnology
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Engineered Drug Delivery Nanosystems ,Normalization of Tumor Microenvironment ,Biomedical Engineering ,Chemical engineering [Engineering] ,Pharmaceutical Science ,General Materials Science ,Bioengineering ,Biotechnology - Abstract
As a complex “soil” ecosystem, the tumor microenvironment (TME) plays a crucial role in the occurrence, development and metastasis of tumors. Reprogramming TME can block the interactive network between tumors and extracellular matrix (ECM) / various surrounding cells and contribute to tumor effective damage, which is a potential therapeutic target in oncotherapy. Nanobiomaterials have received more attention due to their excellent drug loading and easy functionalization properties, which have been extensively integrated into the construction of engineered drug delivery nanosystems for TME normalization therapy. It has become a commanding point in the field of anti-tumor therapy. This review intends to present and analyze advanced nanotechnology strategies for normalizing TME from 7 different aspects including the reprogramming of extracellular matrix (ECM), cancer-associated fibroblasts (CAFs), abnormal blood vasculatures, hypoxia, tumor acidosis, tumor-associated macrophages (TAMs) and tumor immune tolerance microenvironment based on the various engineered drug delivery nanosystems. It also discusses the currently existing problems and future development trends, which are expected to be helpful for the translational application of nanomedicine in clinical cancer therapy. This work was financially supported by the National Natural Science Foundation of China (51303218, 51825302, 11472224, 11672246, 11722220, 21274169 and 81760441), the National Key Research and Development Program of China (2016YFC1100300 and 2017YFB0702603), the Fundamental Research Funds for the Central Universities (G2018KY0302 and 3102019YX01003), and the Natural Science Foundation of Shaanxi Province (2019JQ-347).
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- 2023
18. Direct intermolecular three-component aminotrifluoromethylation of styrenes by visible-light-photoredox catalysis
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Lvyin Zheng, Liuhuan Cai, Xiaoya Zhuo, Lei Deng, Yingying Wu, Beining Yang, Yihan Wang, and Wei Guo
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Organic Chemistry - Abstract
A visible-light-photoredox-catalyzed intermolecular three-component aminotrifluoromethylation of styrenes with phenylhydrazines and Togni's reagents/fluoroalkyl iodides was developed.
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- 2022
19. DBU‐Promoted Three‐Component Cascade Annulations to Access Multiply Substituted 3‐Cyano‐thiophenes
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Lvyin Zheng, Gongping Liu, Xiaoying Zou, Yumei Zhong, Lei Deng, Yingying Wu, Beining Yang, Yihan Wang, and Wei Guo
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Organic Chemistry - Published
- 2022
20. Specific Brain Gray Matter Volume Changes in Pediatric Complete Spinal Cord Injury without Fracture or Dislocation Using Voxel-Based Morphometry Analysis: Preliminary Results
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Weimin Zheng, Ling Wang, Beining Yang, Qian Chen, Yongsheng Hu, Jubao Du, Xuejing Li, Xin Chen, Wen Qin, Baowei Li, Tengfei Liang, Kuncheng Li, Jie Lu, and Nan Chen
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Neurology (clinical) - Abstract
This study aims to investigate the brain gray matter volume (GMV) alterations of pediatric complete thoracolumbar spinal cord injury (SCI) without fracture or dislocation (SCIWOFD) using voxel-based morphometry (VBM) analysis and assess the sensitive neuroimaging biomarkers that may be surrogate targets to enhance brain plasticity. A total of 52 pediatric subjects (age range, 6-12 years), including 25 pediatric SCIWOFD patients and 27 typically developing (TD) children were recruited. An independent two-sample
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- 2022
21. Mettl3 regulates hypertrophic differentiation of chondrocytes through modulating Dmp1 mRNA via Ythdf1-mediated m
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Ying, He, Wei, Wang, Ping, Luo, Yan, Wang, Zhenru, He, Wei, Dong, Meie, Jia, Xijie, Yu, Beining, Yang, and Jiawei, Wang
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Extracellular Matrix Proteins ,Chondrocytes ,Osteogenesis ,Humans ,RNA-Binding Proteins ,Cell Differentiation ,Hypertrophy ,Methyltransferases ,RNA, Messenger ,Phosphoproteins - Abstract
As the main cells in endochondral osteogenesis, chondrocytes have limited self-repair ability due to weak proliferation activity, low density, and dedifferentiation tendency. Here, a thorough inquiry about the effect and underlying mechanisms of methyltransferase like-3 (Mettl3) on chondrocytes was made. Functionally, it was indicated that Mettl3 promoted the proliferation and hypertrophic differentiation of chondrocytes. Mechanically, Dmp1 (dentin matrix protein 1) was proved to be the downstream direct target of Mettl3 for m
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- 2022
22. In situ growth of 2D BiOI precursors on a porous conductive framework for a high performance bismuth based aqueous battery
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Liping Feng, Guangzhi Dong, Xiaoqi Zheng, Pengfei Liu, Beining Yang, Haixi Pan, and Xiao-Dong Zhang
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Battery (electricity) ,In situ ,Materials science ,Aqueous solution ,Renewable Energy, Sustainability and the Environment ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Bismuth ,Anode ,Chemical kinetics ,chemistry ,Chemical engineering ,General Materials Science ,0210 nano-technology ,Porosity ,Electrical conductor - Abstract
Aqueous bismuth based anodes have received intensive interest in recent years. However, further advances in rate capability and cycling stability remain challenging. Herein, a porous conductive network is first constructed to accommodate the dense growth of 2D BiOI nanosheets, which served as an appropriate precursor of Bi active materials. Benefiting from the porous conductive 3D framework and in situ topotactic transformation of ultrathin BiOI nanosheets, favorable reaction kinetics and effective utilization of active materials are achieved. The resultant binder-free bismuth anode shows a prominent areal capacity (2.17 mA h cm−2 at 1 mA cm−2, 1.48 mA h cm−2 at 128 mA cm−2), long-term stability (93.1% retention after 5000 cycles) and high mass loading of 27 mg cm−2. The mechanism regarding cycling stability is revealed by DFT calculations. In addition, the assembled Ni3S2//Bi full battery exhibits a high energy density of 22.73 mW h cm−3. Considering the facile preparation process and impressive performance of the device, this work proposes a general strategy for constructing advanced aqueous batteries and shows the great potential of bismuth based anodes in large-scale applications.
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- 2021
23. YAP1 regulates chondrogenic differentiation of ATDC5 promoted by temporary TNF-α stimulation through AMPK signaling pathway
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Jiawei Wang, Peiyu Chen, Yanru Wu, and Beining Yang
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0301 basic medicine ,Clinical Biochemistry ,Cell Cycle Proteins ,Chondrocyte hypertrophy ,AMP-Activated Protein Kinases ,Chondrocyte ,Cell Line ,Mice ,03 medical and health sciences ,Chondrocytes ,0302 clinical medicine ,medicine ,Animals ,Humans ,Protein kinase A ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,Inflammation ,YAP1 ,Gene knockdown ,Tumor Necrosis Factor-alpha ,Chemistry ,AMPK ,Cell Differentiation ,YAP-Signaling Proteins ,Cell Biology ,General Medicine ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Tumor necrosis factor alpha ,Signal transduction ,Chondrogenesis ,Signal Transduction ,Transcription Factors - Abstract
Local injection of tumor necrosis factor-alpha (TNF-α) at bone fracture sites during the early stage of the inflammatory response is reported to improve fracture repair in a murine model. However, the underlying mechanism is unclear. Endochondral bone formation, a process that is highly related to fracture repair, requires a certain amount of chondrocyte hypertrophy. This study aimed to investigate the effect of TNF-α on the differentiation of murine chondrogenic ATDC5 cells and the underlying mechanism. In this study, improved chondrogenic differentiation of ATDC5 cells was achieved by brief TNF-α stimulation. Moreover, the expression of Yes-associated protein 1 (YAP1) was suppressed after brief TNF-α stimulation. The expressions of inflammatory mediators and chondrogenic and hypertrophic-associated genes in ATDC5 cells triggered by TNF-α were suppressed in the YAP1 overexpression group but enhanced in the YAP1 knockdown group. Mechanistically, TNF-α-induced activation of the 5' AMP-activated protein kinase (AMPK) signaling pathway was regulated by YAP1, as revealed by the phosphorylated-AMPK/AMPK change ratios in the YAP1 overexpression and knockdown groups, respectively. Moreover, the potential for TNF-α to enhance chondrogenic differentiation could be partially reversed with an AMPK inhibitor. Taken together, we demonstrate, for the first time, that YAP1 modulates the ability of TNF-α to enhance chondrocyte differentiation partly through AMPK signaling.
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- 2020
24. Mettl3 inhibits the apoptosis and autophagy of chondrocytes in inflammation through mediating Bcl2 stability via Ythdf1-mediated m
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Ying, He, Wei, Wang, Xiaoxiao, Xu, Beining, Yang, Xijie, Yu, Yanru, Wu, and Jiawei, Wang
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Inflammation ,Mice ,Chondrocytes ,Proto-Oncogene Proteins c-bcl-2 ,Autophagy ,Animals ,RNA-Binding Proteins ,Apoptosis ,Methyltransferases - Abstract
N
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- 2021
25. YAP1 influences differentiation of osteoblastic MC3T3‐E1 cells through the regulation of ID1
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Beining Yang, Nana Fan, Xiayi Liu, Jiawei Wang, Yanru Wu, Hualing Sun, Peiyu Chen, and Heli Zhong
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Inhibitor of Differentiation Protein 1 ,0301 basic medicine ,Transcription, Genetic ,Physiology ,Cellular differentiation ,Clinical Biochemistry ,Down-Regulation ,Cell Cycle Proteins ,Models, Biological ,Cell Line ,Rats, Sprague-Dawley ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Osteogenesis ,medicine ,Animals ,Osteopontin ,Protein kinase A ,Transcription factor ,beta Catenin ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,Gene knockdown ,Osteoblasts ,biology ,Chemistry ,Adenylate Kinase ,Cell Differentiation ,Mesenchymal Stem Cells ,YAP-Signaling Proteins ,Osteoblast ,Cell Biology ,Up-Regulation ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,biology.protein ,Osteocalcin ,Signal transduction ,Signal Transduction - Abstract
Yes-associated protein 1 (YAP1) transcriptional coactivator has recently been identified to regulate skeletal lineage cell differentiation and bone development. However, the role and molecular mechanisms of YAP1 in the regulation of osteoblastic differentiation remains to be elucidated. In this study, we demonstrated that YAP1 expression was increased during osteogenic differentiation of rat bone mesenchymal stem cells and MC3T3-E1. YAP1 overexpression MC3T3-E1 showed increased expression of osteogenesis markers, such as runt-related transcription factor 2, osteocalcin, and osteopontin, as well as alkaline phosphatase and alizarin red staining. Conversely, YAP1 knockdown significantly suppressed MC3T3-E1 osteoblastic differentiation. Mechanistically, we found that YAP1 overexpression upregulated the mRNA and protein expression of the inhibitor of differentiation/DNA binding 1 (ID1), which was contrary to the results of YAP1-knockdown group. Moreover, the early osteogenic differentiation of MC3T3-E1 cells was enhanced by ID1 overexpression. Furthermore, transient transfection with exogenous ID1 overexpression plasmid completely recaptured the decreased effects of YAP1 knockdown on MC3T3-E1 cell differentiation. In addition, β-catenin and AMP-activated protein kinase signaling pathways participated in YAP1 regulation processes. Taken together, our study suggests that YAP1 is a crucial modulator of osteoblast differentiation in vitro, and provides insight into the mechanism by which YAP1 regulates osteoblast differentiation.
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- 2019
26. DDIT3/CHOP promotes autophagy in chondrocytes via SIRT1-AKT pathway
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Chang Yang, Xiaoxiao Xu, Yanru Wu, Wei Dong, Yao Luo, Jiawei Wang, Xiaofei Dong, Xiayi Liu, and Beining Yang
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0301 basic medicine ,Male ,genetic structures ,CHOP ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Chondrocytes ,Western blot ,Sirtuin 1 ,immune system diseases ,hemic and lymphatic diseases ,medicine ,Autophagy ,Animals ,Molecular Biology ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Mice, Knockout ,Gene knockdown ,medicine.diagnostic_test ,Chemistry ,Endoplasmic reticulum ,Cell Biology ,eye diseases ,Cell biology ,Mice, Inbred C57BL ,030104 developmental biology ,030220 oncology & carcinogenesis ,Unfolded protein response ,biological phenomena, cell phenomena, and immunity ,Proto-Oncogene Proteins c-akt ,Transcription Factor CHOP - Abstract
Endoplasmic reticulum (ER) stress can initiate autophagy via unfolded protein response (UPR). As a key downstream gene of UPR, DDIT3/CHOP is expressed in chondrocytes. However, the regulation mechanism of DDIT3/CHOP on autophagy in chondrocytes remains unclear. In this study, the expression levels of autophagic markers Beclin1 and LC3B were found to decrease while p62 increase in the tibial growth plate and costal primary chondrocytes from DDIT3/CHOP KO mice. In vitro, overexpressing DDIT3/CHOP induced autophagy in ATDC5 chondrocytes, displaying an elevated immunofluorescence signal of LC3B and elevated numbers of autophagosomes and autolysosomes. Analysis of the gain- and loss-of-function indicated that the protein level of Beclin1 and the ratio of LC3BII/I increased in DDIT3/CHOP overexpression cells, whereas decreased in DDIT3/CHOP knockdown cells. The decreased level of p62 and additional accumulation of LC3BII caused by chloroquine (CQ) further indicated that DDIT3/CHOP enhanced autophagic flux. Mechanistically, we found that DDIT3/CHOP binds directly to the promoter of SIRT1 to promote its expression by CHIP, qRT-PCR, and Western blot analysis. In addition, SIRT1 enhanced autophagic activity in ATDC5 cells, and inhibition or activation of SIRT1 partially reversed the effect of overexpressing or downregulating DDIT3/CHOP on autophagy. Furthermore, AKT signaling was found to be responsible for DDIT3/CHOP-regulated autophagy in ATDC5 cells. SIRT1 knockdown reversed the effect of DDIT3/CHOP overexpression on AKT signaling. In conclusion, our data clarifies that DDIT3/CHOP promotes autophagy in ATDC5 chondrocytes through the SIRT1-AKT pathway. These results were also confirmed in the primary chondrocytes.
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- 2021
27. Mettl3 inhibits the apoptosis and autophagy of chondrocytes in inflammation through mediating Bcl2 stability via Ythdf1-mediated m6A modification
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Wei Wang, Xijie Yu, Beining Yang, Xiaoxiao Xu, Yanru Wu, Ying He, and Jiawei Wang
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Messenger RNA ,Histology ,Physiology ,Chemistry ,Immunoprecipitation ,Endocrinology, Diabetes and Metabolism ,Autophagy ,RNA-binding protein ,Inflammation ,Chondrocyte ,Cell biology ,medicine.anatomical_structure ,Apoptosis ,In vivo ,medicine ,medicine.symptom - Abstract
N6-methyladenosine (m6A) methylation is one of the most common internal modifications in eukaryotic messenger RNA occurring on N6 nitrogen of adenosine. However, the roles of m6A in temporomandibular joint osteoarthritis (TMJ OA) are still elusive. Here, we investigate the function and mechanism of methyltransferase-like 3 (Mettl3) in chondrocytes in inflammation. We found that the expression of Mettl3 decreased both in vivo TMJ OA mice and in vitro inflammatory stimulation. Functionally, loss and gain studies illustrated that Mettl3 inhibited the apoptosis and autophagy of chondrocytes induced by TNF-α stimulation in vitro. Mettl3 inhibitor, S-adenosylhomocysteine (SAH) promoted the apoptosis and autophagy of chondrocytes with inflammation in vitro and aggravated the degeneration of chondrocytes and subchondral bone in monosodium iodoacetate (MIA) induced TMJ OA mice in vivo. Mechanistically, the bioinformatics analysis, m6A-RNA immunoprecipitation (MeRIP) and RNA immunoprecipitation (RIP) were used to identify that Bcl2 mRNA was the downstream target of Mettl3 for m6A modification. Furthermore, the results revealed that Yth m6A RNA binding protein 1 (Ythdf1) mediated the stability of Bcl2 mRNA catalyzed by Mettl3. Co-immunoprecipitation (Co-IP) showed that Bcl2 protein interacted with Beclin1 protein in chondrocytes induced by TNF-α stimulation. In conclusion, our findings identify that Mettl3 inhibits the apoptosis and autophagy of chondrocytes in inflammation through m6A/Ythdf1/Bcl2 signal axis which provides promising therapeutic strategy for TMJ OA.
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- 2022
28. DNA damage-inducible transcript 3 restrains osteoclast differentiation and function
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Yanru Wu, Meie Jia, Tianqi Wang, Hualing Sun, Jiawei Wang, Yao Luo, Beining Yang, and Ying He
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musculoskeletal diseases ,Histology ,Osteolysis ,Physiology ,Endocrinology, Diabetes and Metabolism ,Osteoclasts ,DNA damage-inducible transcript 3 ,Bone resorption ,Mice ,Osteogenesis ,Osteoclast ,Cathepsin K ,medicine ,Animals ,Bone Resorption ,Protein kinase B ,NFATC Transcription Factors ,biology ,Chemistry ,RANK Ligand ,Cell Differentiation ,medicine.disease ,Cell biology ,medicine.anatomical_structure ,Adipogenesis ,RANKL ,biology.protein ,DNA Damage - Abstract
DNA damage-inducible transcript 3 (DDIT3), a member of the CCAAT/enhancer-binding protein (C/EBP) family, is involved in cellular apoptosis and differentiation. DDIT3 participates in the regulation of adipogenesis and osteogenesis in vitro and in vivo. However, the role of DDIT3 in osteoclastogenesis is not yet known. In this study, the involvement of DDIT3 in osteoclast differentiation and function was reported for the first time. CRISPR/Cas9-mediated DDIT3 knockout (KO) mice were generated for functional assessment. Tartrate-resistant acid phosphatase (TRAP) staining of distal femurs showed increased positive cells in DDIT3 KO mice. DDIT3 expression was downregulated during the receptor activator of nuclear factor κB ligand (RANKL)-induced osteoclast differentiation of bone marrow-derived macrophages (BMMs). The loss of DDIT3 increased the expression of osteoclast-specific markers, including nuclear factor of activated T-cells cytoplasmic 1 (NFATc1), TRAP, cathepsin K (CTSK), and dendritic cell-specific transmembrane protein (DC-STAMP) and promoted the formation of TRAP-positive multinucleated osteoclasts. The actin ring number and resorption area of bone slices were also increased in DDIT3 KO BMMs. Lentivirus-mediated DDIT3 overexpression significantly inhibited the osteoclast differentiation of RAW264.7 cells. In the tumor necrosis factor-α-induced osteolysis model, DDIT3 deficiency enhanced osteoclast formation and aggravated bone resorption. DDIT3 inhibited osteoclast differentiation by regulating the C/EBPα-CTSK axis. Furthermore, DDIT3 KO intensified the RANKL-triggered activation of the MAPKs and Akt signaling pathways. Taken together, the results revealed the essential role of DDIT3 in osteoclastogenesis in vitro and in vivo and its close relationship with osteoclast-associated transcription factors and pathways.
- Published
- 2021
29. Selective Gas Adsorption and Separation of Carbon Dioxide in Metal-organic Frameworks and Composites
- Author
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Jie Du, Ziang Li, and Beining Yang
- Subjects
History ,Computer Science Applications ,Education - Published
- 2021
30. Yes-associated protein 1 promotes the differentiation and mineralization of cementoblast
- Author
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Jiawei Wang, H. Sun, Beining Yang, Yanru Wu, and Fangfang Song
- Subjects
0301 basic medicine ,Dentin Matrix Acidic Phosphoprotein 1 ,Physiology ,Sialoglycoproteins ,Cementoblast ,Osteocalcin ,Clinical Biochemistry ,Cell Cycle Proteins ,Core Binding Factor Alpha 1 Subunit ,Smad Proteins ,Biology ,Bone Morphogenetic Protein 1 ,Cell Line ,Mice ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,Dentin sialophosphoprotein ,medicine ,Animals ,Cementum ,Cementogenesis ,Extracellular Signal-Regulated MAP Kinases ,Adaptor Proteins, Signal Transducing ,Dental Cementum ,Flavonoids ,Extracellular Matrix Proteins ,Cell Differentiation ,YAP-Signaling Proteins ,030206 dentistry ,Cell Biology ,Alkaline Phosphatase ,Phosphoproteins ,DMP1 ,Cell biology ,RUNX2 ,stomatognathic diseases ,Pyrimidines ,030104 developmental biology ,medicine.anatomical_structure ,Biochemistry ,Pyrazoles ,Dental cementum - Abstract
Yes-associated protein 1 (YAP1) transcriptional coactivator is a mediator of mechanosensitive signaling. Cementum, which covers the tooth root surface, continuously senses external mechanical stimulation. Cementoblasts are responsible for the mineralization and maturation of the cementum. However, the effect of YAP1 on cementoblast differentiation remains largely unknown. In this study, we initially demonstrated that YAP1 overexpression enhanced the mineralization ability of cementoblasts. YAP1 upregulated the mRNA and protein expression of several cementogenesis markers, such as alkaline phosphatase (ALP), runt-related transcription factor 2 (Runx2), osteocalcin (OCN), and dentin matrix acidic phosphoprotein 1 (DMP1). The YAP1 overexpression group showed higher intensities of ALP and Alizarin red stain than the YAP1-knockdown group. Unexpectedly, a sharp increase in the expression of dentin sialophosphoprotein (DSPP) was induced by the overexpression of YAP1. Knockdown of YAP1 suppressed DSPP transcriptional activity. YAP1 overexpression activated Smad-dependent BMP signaling and slightly inhibited Erk1/2 signaling pathway activity. Treatment with specific BMP antagonist (LDN193189) prevented the upregulation of the mRNA levels of ALP, RUNX2, and OCN, as well as intensity of ALP-stained and mineralized nodules in cementoblasts. The Erk1/2 signaling pathway inhibitor (PD 98,059) upregulated these cementogenesis markers. Thus, our study suggested that YAP1 enhanced cementoblast mineralization in vitro. YAP1 exerted its effect on the cementoblast partly by regulating the Smad-dependent BMP and Erk1/2 signaling pathways.
- Published
- 2017
31. YAP1 inhibits the induction of TNF-α-stimulated bone-resorbing mediators by suppressing the NF-κB signaling pathway in MC3T3-E1 cells
- Author
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Xiaoxiao Xu, Hualing Sun, Yanru Wu, Jiawei Wang, Beining Yang, and Heli Zhong
- Subjects
0301 basic medicine ,Small interfering RNA ,Physiology ,Clinical Biochemistry ,Cell Cycle Proteins ,Bone resorption ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Osteoprotegerin ,Osteoclast ,medicine ,Animals ,Bone Resorption ,Adaptor Proteins, Signal Transducing ,YAP1 ,Osteoblasts ,Chemistry ,Interleukin-6 ,Tumor Necrosis Factor-alpha ,RANK Ligand ,NF-kappa B ,Osteoblast ,YAP-Signaling Proteins ,Cell Biology ,3T3 Cells ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Tumor necrosis factor alpha ,Bone Remodeling ,Signal transduction ,Signal Transduction - Abstract
Yes-associated protein 1 (YAP1), the core downstream effector of the Hippo signaling cascade, was involved in the regulation of osteoblast and osteoclast differentiation and in bone metabolism. However, the regulatory effects and mechanisms of YAP1 on bone-remodeling molecules in osteoblasts under inflammation remain unknown. In this study, YAP1 expression level was downregulated after treatment with inflammatory cytokine tumor necrosis factor-α (TNF-α) in MC3T3-E1 cells. The key osteoclastogenic molecules induced by TNF-α, namely, interleukin-6 and receptor activator of nuclear factor-κB (NF-κB) ligand, were suppressed after lentivirus-induced YAP1 overexpression, which dramatically increased the expression level of osteoprotegerin. Conversely, the expression levels of the above factors showed opposite trends in the YAP1 small interfering RNA and YAP1 inhibitor (verteporfin) group. Mechanistically, YAP1 attenuated the TNF-α-induced activation of the NF-κB signaling pathway as revealed by the reduced expression of phosphorylated-p65 and NF-κB reporter activity and the nuclear translocation of p65. Moreover, the expression level of YAP1 suppressed by TNF-α was reversed by berberine in concentration-dependent manner. Taken together, our study suggests that YAP1 plays a critical role in the regulation of bone metabolism and is a potential therapeutic target for treating inflammatory bone resorption.
- Published
- 2019
32. DDIT3 regulates cementoblast mineralization by isocitrate dehydrogenase 1 through nuclear factor-κB pathway
- Author
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Yanru Wu, Miao Yu, Beining Yang, Jie Liu, Hualing Sun, Xiayi Liu, and Jiawei Wang
- Subjects
0301 basic medicine ,Physiology ,Cementoblast ,Clinical Biochemistry ,Cell Line ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,Nitriles ,Animals ,Humans ,Sulfones ,Transcription factor ,Regulation of gene expression ,Dental Cementum ,Gene knockdown ,biology ,Chemistry ,NF-kappa B ,Cell Differentiation ,Cell Biology ,Isocitrate Dehydrogenase ,Cell biology ,030104 developmental biology ,Isocitrate dehydrogenase ,Gene Expression Regulation ,030220 oncology & carcinogenesis ,Gene Knockdown Techniques ,Osteocalcin ,biology.protein ,Signal transduction ,Transcription Factor CHOP - Abstract
DDIT3 is of great importance in endoplasmic reticulum stress and is involved in many inflammatory diseases and mineralization processes. The cementum protects teeth from periodontitis and provides attachment for Sharpey's fibers of the periodontal ligament. However, the effect of DDIT3 on cementoblast differentiation remains largely unknown. In this study, we found that DDIT3 was suppressed during cementoblast differentiation. Knockdown of DDIT3 increased the messenger RNA (mRNA) and protein levels of several key osteogenic markers in vitro, including alkaline phosphatase, runt-related transcription factor 2, and osteocalcin (OCN). In addition, isocitrate dehydrogenase 1 (IDH1) was increased during cementoblast differentiation, and knockdown of DDIT3 increased the protein and mRNA levels of IDH1. Furthermore, inhibition of IDH1 could partially reduce the effect of DDIT3 on cementoblast differentiation. The DDIT3 knockdown activated nuclear factor-κB (NF-κB) transcriptional activity and upregulated the expression of p-p65 and p-IκBα. The increased osteogenic differentiation ability and IDH1 expression, as induced by the DDIT3 knockdown, could be partially turned over by the addition of NF-κB inhibitor BAY 11-7082. Overall, our data clarified that DDIT3 suppresses cementoblast differentiation through IDH1, via the NF-κB pathway.
- Published
- 2018
33. YAP1 negatively regulates chondrocyte differentiation partly by activating the β-catenin signaling pathway
- Author
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Miao Yu, Fangfang Song, Hualing Sun, Beining Yang, Jiawei Wang, and Yanru Wu
- Subjects
0301 basic medicine ,Small interfering RNA ,Cellular differentiation ,Cell Cycle Proteins ,Biology ,Biochemistry ,Chondrocyte ,Cell Line ,03 medical and health sciences ,Mice ,Chondrocytes ,medicine ,Animals ,Humans ,Wnt Signaling Pathway ,beta Catenin ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,YAP1 ,Hippo signaling pathway ,Wnt signaling pathway ,Cell Differentiation ,YAP-Signaling Proteins ,Cell Biology ,Hypertrophy ,Phosphoproteins ,Molecular biology ,030104 developmental biology ,medicine.anatomical_structure ,DKK1 ,Gene Expression Regulation ,Gene Knockdown Techniques ,Signal transduction ,Transcription Factors - Abstract
YAP1 (Yes-associated protein 1) transcriptional coactivator is a downstream gene of the Hippo signaling pathway, which controls cell proliferation and differentiation. YAP1 plays a significant role in the regulation of cartilage and bone development. However, the molecular mechanism by which YAP1 regulates chondrocyte differentiation remains to be elucidated. Immunofluorescent staining was used to visualize the localization of YAP1 expression in the mouse chondroprogenitor ATDC5 cell line. ATDC5 cells with lentivirus-vector-mediated YAP1 overexpression and knockdown were established. The differentiation abilities were examined by real-time quantitative PCR and two staining methods The expression levels of sex-determining region Y-type high mobility group box protein (SOX9) and key proteins in the Wnt/β-catenin pathway were analyzed by Western blot. The Dickkopf-1 (Dkk1) and small interfering RNA (siRNA) of β-catenin were used for further study. The YAP1 protein was mainly expressed in the nucleus of ATDC5 cells. YAP1 overexpression enhanced chondrocyte proliferation but inhibited chondrocyte differentiation, which were contrary to the findings of the YAP1-knockdown group. Moreover, YAP1 overexpression activated Wnt/β-catenin signaling pathway. Treatment with exogenous DKK1 and β-catenin siRNA partially recaptured the effects of YAP1 overexpression on ATDC5 cell differentiation. Taken together, our study suggested that YAP1 attenuated ATDC5 cell chondrogenic and hypertrophic differentiation. We also demonstrated that YAP1 exerted its effect on the chondrocyte differentiation by activating the Wnt/β-catenin signaling pathway.
- Published
- 2017
34. Polyamine-induced nitric oxide generation and its potential requirement for peroxide in suspension cells of soybean cotyledon node callus
- Author
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Fengming Gao, Guoxing Su, Beining Yang, Jun Wang, and Junzhang Wu
- Subjects
food.ingredient ,biology ,Physiology ,food and beverages ,Plant Science ,Confocal scanning microscopy ,Nitric Oxide ,Peroxides ,Nitric oxide ,chemistry.chemical_compound ,food ,chemistry ,Biochemistry ,Catalase ,Callus ,Polyamines ,Genetics ,Putrescine ,biology.protein ,Biophysics ,Soybeans ,Diamine oxidase ,Polyamine ,Cotyledon - Abstract
Polyamines (PAs) induce nitric oxide (NO) generation in plant tissues; however, their mechanism is still unclear. In the present study, suspension cells of soybean cotyledon-node callus were employed. Using a NO-specific fluorescent dye, DAF-FM-DA (3-amino, 4-aminomethyl-2', 7'-difluorescein, diacetate), and laser confocal scanning microscopy, changes in NO generation induced by exogenous PAs were examined. The results of this study showed that NO fluorescence was significantly induced above endogenous levels when callus cells were treated with 0.05 mM PAs. However, putrescine (Put) was the most active PA. The observed NO release by PAs was rapid and without an apparent lag phase. The response was quenched when the suspension cells were treated with the NO-specific scavenger cPTIO (2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-1-oxy-3-oxide). When 0.01 mM l-aminoguanidine (L-AG) was applied prior to the PA treatments, the NO fluorescence was diminished, and the inhibition of NO fluorescence was correlated with a decrease in diamine oxidase (DAO) activity. When callus cells were incubated with 0.1 mM catalase (CAT) and 1.0 mM N'N-dimethylthiourea (DMTU) prior to PA application, NO release was significantly reduced. In sum, our data provided evidence for PA-induced NO generation in suspension cells of soybean cotyledon node callus and demonstrated that peroxide, potentially derived from PA oxidative degradation, was involved in NO release induced by PAs.
- Published
- 2014
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