107 results on '"Allen, JT"'
Search Results
2. Does hydatid cyst fluid from Echinococcus granulosus cysts have any effect on cells involved in fibrosis in cystic echinococcosis?
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Mohammed, A, Allen, JT, and Rogan, MT
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Gerontology ,Triad (sociology) ,business.industry ,Medicine ,business - Abstract
Cystic echinococcosis is characterized by the presence of slow growing hydatid cysts, usually in the liver or lungs. Survival of the parasite is based on an interaction of the host immune system and a range of parasite immune-evasive strategies. Fibrosis in the tissues surrounding the cysts can be seen as a host protective response isolating the parasite and restricting its growth or from another perspective fibrosis may be protective for the parasite by providing a barrier to more effective immunological responses. In this study the adenocarcinomic human alveolar basal epithelial cell line (A549) was used as model system. This cell line can be involved in fibrosis as cells can transform into mesenchymal cells and differentiate later to fibroblasts and/or myofibroblasts which can ultimately secrete collagen. Cells were initially cultured in vitro in RPMI-1640 medium containing 1-10% hydatid cyst fluid (HCF). The possible effect of the parasite extracts on cell migration was investigated using a wound healing assay. The ability of HCF components to modify cell surface markers of mesenchymal transition was also investigated by fluorescence microscopy. Results showed that there was a dose-dependent increase in cell growth in the presence of cyst fluid after 5 days of culture. The migratory response of cells was also enhanced by the presence of HCF. Both the enhanced growth and migratory activity were still evident when the HCF had been boiled indicating that the components responsible were thermostable. Semi-purified extracts of a major HCF component, antigen B showed a similar high stimulatory effect similar to that of HCF. The fluorescence microscopy showed a significant expression in the fibronectin and E-cadherin cell markers in cells treated with HCF. These results indicate that components within HCF have a stimulatory effect in the possible enhancement of fibrosis.
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- 2016
3. The SAMI Galaxy Survey: Spatially resolving the environmental quenching of star formation in GAMA galaxies
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Schaefer, AL, Croom, SM, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Medling, AM, Ho, IT, Scott, N, Richards, SN, Pracy, MB, Gunawardhana, MLP, Norberg, P, Alpaslan, M, Bauer, AE, Bekki, K, Bland-Hawthorn, J, Bloom, JV, Bryant, JJ, Couch, WJ, Driver, SP, Fogarty, LMR, Foster, C, Goldstein, G, Green, AW, Hopkins, AM, Konstantopoulos, IS, Lawrence, JS, López-Sánchez, AR, Lorente, NPF, Owers, MS, Sharp, R, Sweet, SM, Taylor, EN, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Walcher, CJ, Wong, OI, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Schaefer, AL, Croom, SM, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Medling, AM, Ho, IT, Scott, N, Richards, SN, Pracy, MB, Gunawardhana, MLP, Norberg, P, Alpaslan, M, Bauer, AE, Bekki, K, Bland-Hawthorn, J, Bloom, JV, Bryant, JJ, Couch, WJ, Driver, SP, Fogarty, LMR, Foster, C, Goldstein, G, Green, AW, Hopkins, AM, Konstantopoulos, IS, Lawrence, JS, López-Sánchez, AR, Lorente, NPF, Owers, MS, Sharp, R, Sweet, SM, Taylor, EN, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Walcher, CJ, Wong, OI, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
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- 2017
4. THE SAMI GALAXY SURVEY: REVISITING GALAXY CLASSIFICATION THROUGH HIGH-ORDER STELLAR KINEMATICS
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Van De Sande, J ; https://orcid.org/0000-0003-2552-0021, Bland-Hawthorn, J, Fogarty, LMR, Cortese, L, D'Eugenio, F, Croom, SM, Scott, N, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Cecil, G, Colless, M, Couch, WJ, Davies, R, Elahi, PJ, Foster, C, Goldstein, G, Goodwin, M, Groves, B, Ho, IT, Jeong, H, Jones, DH, Konstantopoulos, IS, Lawrence, JS, Leslie, SK, López-Sánchez, ÁR, McDermid, RM, McElroy, R, Medling, AM, Oh, S, Owers, MS, Richards, SN, Schaefer, AL, Sharp, R, Sweet, SM, Taranu, D, Tonini, C, Walcher, CJ, Yi, SK, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Van De Sande, J ; https://orcid.org/0000-0003-2552-0021, Bland-Hawthorn, J, Fogarty, LMR, Cortese, L, D'Eugenio, F, Croom, SM, Scott, N, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Cecil, G, Colless, M, Couch, WJ, Davies, R, Elahi, PJ, Foster, C, Goldstein, G, Goodwin, M, Groves, B, Ho, IT, Jeong, H, Jones, DH, Konstantopoulos, IS, Lawrence, JS, Leslie, SK, López-Sánchez, ÁR, McDermid, RM, McElroy, R, Medling, AM, Oh, S, Owers, MS, Richards, SN, Schaefer, AL, Sharp, R, Sweet, SM, Taranu, D, Tonini, C, Walcher, CJ, Yi, SK, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
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- 2017
5. The SAMI Galaxy Survey: Asymmetry in gas kinematics and its links to stellar mass and star formation
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Bloom, JV, Fogarty, LMR, Croom, SM, Schaefer, A, Bryant, JJ, Cortese, L, Richards, S, Bland-Hawthorn, J, Ho, IT, Scott, N, Goldstein, G, Medling, A, Brough, S ; https://orcid.org/0000-0002-9796-1363, Sweet, SM, Cecil, G, López-Sánchez, A, Glazebrook, K, Parker, Q, Allen, JT, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Lorente, N, Owers, MS, Sharp, R, Bloom, JV, Fogarty, LMR, Croom, SM, Schaefer, A, Bryant, JJ, Cortese, L, Richards, S, Bland-Hawthorn, J, Ho, IT, Scott, N, Goldstein, G, Medling, A, Brough, S ; https://orcid.org/0000-0002-9796-1363, Sweet, SM, Cecil, G, López-Sánchez, A, Glazebrook, K, Parker, Q, Allen, JT, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Lorente, N, Owers, MS, and Sharp, R
- Abstract
We study the properties of kinematically disturbed galaxies in the Sydney-AAO Multi-object Integral field spectrograph (SAMI) Galaxy Survey using a quantitative criterion, based on kinemetry (Krajnović et al.). The approach, similar to the application of kinemetry by Shapiro et al., uses ionized gas kinematics, probed by Ha emission. By this method, 23 ± 7 per cent of our 360-galaxy sub-sample of the SAMI Galaxy Survey are kinematically asymmetric. Visual classifications agree with our kinemetric results for 90 per cent of asymmetric and 95 per cent of normal galaxies.We find that stellar mass and kinematic asymmetry are inversely correlated and that kinematic asymmetry is both more frequent and stronger in low-mass galaxies. This builds on previous studies that found high fractions of kinematic asymmetry in low-mass galaxies using a variety of different methods. Concentration of star formation and kinematic disturbance are found to be correlated, confirming results found in previous work. This effect is stronger for high-mass galaxies (log(M*) > 10) and indicates that kinematic disturbance is linked to centrally concentrated star formation. Comparison of the inner (within 0.5Re) and outer Ha equivalent widths of asymmetric and normal galaxies shows a small but significant increase in inner equivalent width for asymmetric galaxies.
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- 2017
6. The SAMI Galaxy Survey: The cluster redshift survey, target selection and cluster properties
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Owers, MS, Allen, JT, Baldry, I, Bryant, JJ, Cecil, GN, Cortese, L, Croom, SM, Driver, SP, Fogarty, LMR, Green, AW, Helmich, E, de Jong, JTA, Kuijken, K, Mahajan, S, McFarland, J, Pracy, MB, Robotham, AGS, Sikkema, G, Sweet, S, Taylor, EN, Verdoes Kleijn, G, Bauer, AE, Bland-Hawthorn, J, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Couch, WJ, Davies, RL, Drinkwater, MJ, Goodwin, M, Hopkins, AM, Konstantopoulos, IS, Foster, C, Lawrence, JS, Lorente, NPF, Medling, AM, Metcalfe, N, Richards, SN, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Scott, N, Shanks, T, Sharp, R, Thomas, AD, Tonini, C, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Owers, MS, Allen, JT, Baldry, I, Bryant, JJ, Cecil, GN, Cortese, L, Croom, SM, Driver, SP, Fogarty, LMR, Green, AW, Helmich, E, de Jong, JTA, Kuijken, K, Mahajan, S, McFarland, J, Pracy, MB, Robotham, AGS, Sikkema, G, Sweet, S, Taylor, EN, Verdoes Kleijn, G, Bauer, AE, Bland-Hawthorn, J, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Couch, WJ, Davies, RL, Drinkwater, MJ, Goodwin, M, Hopkins, AM, Konstantopoulos, IS, Foster, C, Lawrence, JS, Lorente, NPF, Medling, AM, Metcalfe, N, Richards, SN, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Scott, N, Shanks, T, Sharp, R, Thomas, AD, Tonini, C, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
- Published
- 2017
7. God-Talk as Apocalyptic
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Allen Jt
- Subjects
Pastoral Care ,Bible ,General Medicine ,Epistemology ,Life Change Events ,Religion ,Caregivers ,Imagination ,Humans ,Perception ,Christian ministry ,Grief ,Sociology ,Dimension (data warehouse) ,Order (virtue) ,Language - Abstract
Notes that God-talk encountered in pastoral ministry resembles the genre of apocalyptic literature and that the language and imagery is often confrontational and non-rational. Opines that caregivers need to be aware of the dynamic dimension of apocalyptic in order to understand the use of apocalyptic imagery in the pastoral encounter. Explores the background and theology of apocalyptic perspectives and suggests how it might be utilized in pastoral ministry
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- 2000
- Full Text
- View/download PDF
8. THE SAMI GALAXY SURVEY: GALAXY INTERACTIONS and KINEMATIC ANOMALIES in ABELL 119
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Oh, S, Yi, SK, Cortese, L, Sande, JVD, Mahajan, S, Jeong, H, Sheen, YK, Allen, JT, Bekki, K, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Colless, M, Croom, SM, Fogarty, LMR, Goodwin, M, Green, A, Konstantopoulos, IS, Lawrence, J, López-Sánchez, R, Lorente, NPF, Medling, AM, Owers, MS, Richards, S, Scott, N, Sharp, R, Sweet, SM, van de Sande, Jesse ; https://orcid.org/0000-0003-2552-0021, Oh, S, Yi, SK, Cortese, L, Sande, JVD, Mahajan, S, Jeong, H, Sheen, YK, Allen, JT, Bekki, K, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Colless, M, Croom, SM, Fogarty, LMR, Goodwin, M, Green, A, Konstantopoulos, IS, Lawrence, J, López-Sánchez, R, Lorente, NPF, Medling, AM, Owers, MS, Richards, S, Scott, N, Sharp, R, Sweet, SM, and van de Sande, Jesse ; https://orcid.org/0000-0003-2552-0021
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- 2016
9. The SAMI Galaxy Survey: The link between angular momentum and optical morphology
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Cortese, L, Fogarty, LMR, Bekki, K, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Couch, W, Catinella, B, Colless, M, Obreschkow, D, Taranu, D, Tescari, E, Barat, D, Bland-Hawthorn, J, Bloom, J, Bryant, JJ, Cluver, M, Croom, SM, Drinkwater, MJ, d'Eugenio, F, Konstantopoulos, IS, Lopez-Sanchez, A, Mahajan, S, Scott, N, Tonini, C, Wong, OI, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Goodwin, M, Green, AW, Ho, IT, Kelvin, LS, Lawrence, JS, Lorente, NPF, Medling, AM, Owers, MS, Richards, S, Sharp, R, Sweet, SM, Cortese, L, Fogarty, LMR, Bekki, K, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, Couch, W, Catinella, B, Colless, M, Obreschkow, D, Taranu, D, Tescari, E, Barat, D, Bland-Hawthorn, J, Bloom, J, Bryant, JJ, Cluver, M, Croom, SM, Drinkwater, MJ, d'Eugenio, F, Konstantopoulos, IS, Lopez-Sanchez, A, Mahajan, S, Scott, N, Tonini, C, Wong, OI, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Goodwin, M, Green, AW, Ho, IT, Kelvin, LS, Lawrence, JS, Lorente, NPF, Medling, AM, Owers, MS, Richards, S, Sharp, R, and Sweet, SM
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- 2016
10. The SAMI galaxy survey: Can we trust aperture corrections to predict star formation?
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Richards, SN, Bryant, JJ, Croom, SM, Hopkins, AM, Schaefer, AL, Bland-Hawthorn, J, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cecil, G, Cortese, L, Fogarty, LMR, Gunawardhana, MLP, Goodwin, M, Green, AW, Ho, IT, Kewley, LJ, Konstantopoulos, IS, Lawrence, JS, Lorente, NPF, Medling, AM, Owers, MS, Sharp, R, Sweet, SM, Taylor, EN, Richards, SN, Bryant, JJ, Croom, SM, Hopkins, AM, Schaefer, AL, Bland-Hawthorn, J, Allen, JT, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cecil, G, Cortese, L, Fogarty, LMR, Gunawardhana, MLP, Goodwin, M, Green, AW, Ho, IT, Kewley, LJ, Konstantopoulos, IS, Lawrence, JS, Lorente, NPF, Medling, AM, Owers, MS, Sharp, R, Sweet, SM, and Taylor, EN
- Abstract
In the low-redshift Universe (z < 0.3), our view of galaxy evolution is primarily based on fibre optic spectroscopy surveys. Elaborate methods have been developed to address aperture effects when fixed aperture sizes only probe the inner regions for galaxies of ever decreasing redshift or increasing physical size. These aperture corrections rely on assumptions about the physical properties of galaxies. The adequacy of these aperture corrections can be tested with integralfield spectroscopic data. We use integral-field spectra drawn from 1212 galaxies observed as part of the SAMI Galaxy Survey to investigate the validity of two aperture correction methods that attempt to estimate a galaxy's total instantaneous star formation rate.We show that biases arise when assuming that instantaneous star formation is traced by broad-band imaging, and when the aperture correction is built only from spectra of the nuclear region of galaxies. These biases may be significant depending on the selection criteria of a survey sample. Understanding the sensitivities of these aperture corrections is essential for correct handling of systematic errors in galaxy evolution studies.
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- 2016
11. Differential effects of T-helper cell-associated cytokines on the expression of two forms of ICAM-1 receptor during HRV infection
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Witheman SC, BIANCO, Andrea, Allen JT, KnightR A, Spiteri MA, Witheman, Sc, Bianco, Andrea, Allen, Jt, Knightr, A, and Spiteri, Ma
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- 2001
12. Interferon-gamma (IFN-) induce de novo protein synthesis of both membrane and soluble intercellular adhesion molecule-1 in normal human bronchial epithelial cells
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Witheman SC, BIANCO, Andrea, Allen JT, Knight RA, Spiteri MA, Witheman, Sc, Bianco, Andrea, Allen, Jt, Knight, Ra, and Spiteri, Ma
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- 2001
13. The SAMI Pilot Survey: Stellar kinematics of galaxies in Abell 85, 168 and 2399
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Fogarty, LMR, Scott, N, Owers, MS, Croom, SM, Bekki, K, Houghton, RCW, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, D'Eugenio, F, Cecil, GN, Colless, MM, Bland-Hawthorn, J, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cortese, L, Davies, RL, Jones, DH, Pracy, M, Allen, JT, Bryant, JJ, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Lorente, NPF, Richards, S, Sharp, RG, Fogarty, LMR, Scott, N, Owers, MS, Croom, SM, Bekki, K, Houghton, RCW, van de Sande, J ; https://orcid.org/0000-0003-2552-0021, D'Eugenio, F, Cecil, GN, Colless, MM, Bland-Hawthorn, J, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cortese, L, Davies, RL, Jones, DH, Pracy, M, Allen, JT, Bryant, JJ, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Lorente, NPF, Richards, S, and Sharp, RG
- Published
- 2015
14. The SAMI Galaxy Survey: Early Data Release
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Allen, JT, Croom, SM, Konstantopoulos, IS, Bryant, JJ, Sharp, R, Cecil, GN, Fogarty, LMR, Foster, C, Green, AW, Ho, IT, Owers, MS, Schaefer, AL, Scott, N, Bauer, AE, Baldry, I, Barnes, LA, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Cortese, L, Couch, WJ, Drinkwater, MJ, Driver, SP, Goodwin, M, Gunawardhana, MLP, Hampton, EJ, Hopkins, AM, Kewley, LJ, Lawrence, JS, Leon-Saval, SG, Liske, J, López-Sánchez, R, Lorente, NPF, McElroy, R, Medling, AM, Mould, J, Norberg, P, Parker, QA, Power, C, Pracy, MB, Richards, SN, Robotham, ASG, Sweet, SM, Taylor, EN, Thomas, AD, Tonini, C, Walcher, CJ, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Allen, JT, Croom, SM, Konstantopoulos, IS, Bryant, JJ, Sharp, R, Cecil, GN, Fogarty, LMR, Foster, C, Green, AW, Ho, IT, Owers, MS, Schaefer, AL, Scott, N, Bauer, AE, Baldry, I, Barnes, LA, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Cortese, L, Couch, WJ, Drinkwater, MJ, Driver, SP, Goodwin, M, Gunawardhana, MLP, Hampton, EJ, Hopkins, AM, Kewley, LJ, Lawrence, JS, Leon-Saval, SG, Liske, J, López-Sánchez, R, Lorente, NPF, McElroy, R, Medling, AM, Mould, J, Norberg, P, Parker, QA, Power, C, Pracy, MB, Richards, SN, Robotham, ASG, Sweet, SM, Taylor, EN, Thomas, AD, Tonini, C, Walcher, CJ, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
- Abstract
We present the Early Data Release of the Sydney-AAOMulti-object Integral field spectrograph (SAMI) Galaxy Survey. The SAMI Galaxy Survey is an ongoing integral field spectroscopic survey of ~3400 low-redshift (z < 0.12) galaxies, covering galaxies in the field and in groups within the Galaxy And Mass Assembly (GAMA) survey regions, and a sample of galaxies in clusters. In the Early Data Release, we publicly release the fully calibrated data cubes for a representative selection of 107 galaxies drawn from the GAMA regions, along with information about these galaxies from the GAMA catalogues. All data cubes for the Early Data Release galaxies can be downloaded individually or as a set from the SAMI Galaxy Survey website. In this paper we also assess the quality of the pipeline used to reduce the SAMI data, giving metrics that quantify its performance at all stages in processing the raw data into calibrated data cubes. The pipeline gives excellent results throughout, with typical sky subtraction residuals in the continuum of 0.9-1.2 per cent, a relative flux calibration uncertainty of 4.1 per cent (systematic) plus 4.3 per cent (statistical), and atmospheric dispersion removed with an accuracy of 0.09 arcsec, less than a fifth of a spaxel.
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- 2015
15. The SAMI Pilot Survey: The fundamental and mass planes in three low-redshift clusters
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Scott, N, Fogarty, LMR, Owers, MS, Croom, SM, Colless, M, Davies, RL, Brough, S ; https://orcid.org/0000-0002-9796-1363, Michael, BP, Bland-Hawthorn, J, Heath Jones, D, Allen, JT, Bryant, JJ, Cortese, L, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Richards, S, Sharp, R, Scott, N, Fogarty, LMR, Owers, MS, Croom, SM, Colless, M, Davies, RL, Brough, S ; https://orcid.org/0000-0002-9796-1363, Michael, BP, Bland-Hawthorn, J, Heath Jones, D, Allen, JT, Bryant, JJ, Cortese, L, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Richards, S, and Sharp, R
- Abstract
Using new integral field observations of 106 galaxies in three nearby clusters, we investigate how the intrinsic scatter of the Fundamental Plane depends on the way in which the velocity dispersion and effective radius are measured. Our spatially resolved spectroscopy, combined with a cluster sample with negligible relative distance errors, allows us to derive a Fundamental Plane with minimal systematic uncertainties. From the apertures we tested, we find that velocity dispersions measured within a circular aperture with radius equal to one effective radius minimizes the intrinsic scatter of the Fundamental Plane. Using simple yet powerful Jeans dynamical models, we determine dynamical masses for our galaxies. Replacing luminosity in the Fundamental Plane with dynamical mass, we demonstrate that the resulting Mass Plane has further reduced scatter, consistent with zero intrinsic scatter. Using these dynamical models, we also find evidence for a possibly non-linear relationship between dynamical mass-to-light ratio and velocity dispersion.
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- 2015
16. The SAMI Galaxy Survey: Instrument specification and target selection
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Bryant, JJ, Owers, MS, Robotham, ASG, Croom, SM, Driver, SP, Drinkwater, MJ, Lorente, NPF, Cortese, L, Scott, N, Colless, M, Schaefer, A, Taylor, EN, Konstantopoulos, IS, Allen, JT, Baldry, I, Barnes, L, Bauer, AE, Bland-Hawthorn, J, Bloom, JV, Brooks, AM, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cecil, G, Couch, W, Croton, D, Davies, R, Ellis, S, Fogarty, LMR, Foster, C, Glazebrook, K, Goodwin, M, Green, A, Gunawardhana, ML, Hampton, E, Ho, IT, Hopkins, AM, Kewley, L, Lawrence, JS, Leon-Saval, SG, Leslie, S, McElroy, R, Lewis, G, Liske, J, López-Sánchez, R, Mahajan, S, Medling, AM, Metcalfe, N, Meyer, M, Mould, J, Obreschkow, D, O'Toole, S, Pracy, M, Richards, SN, Shanks, T, Sharp, R, Sweet, SM, Thomas, AD, Tonini, C, Walcher, CJ, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Bryant, JJ, Owers, MS, Robotham, ASG, Croom, SM, Driver, SP, Drinkwater, MJ, Lorente, NPF, Cortese, L, Scott, N, Colless, M, Schaefer, A, Taylor, EN, Konstantopoulos, IS, Allen, JT, Baldry, I, Barnes, L, Bauer, AE, Bland-Hawthorn, J, Bloom, JV, Brooks, AM, Brough, S ; https://orcid.org/0000-0002-9796-1363, Cecil, G, Couch, W, Croton, D, Davies, R, Ellis, S, Fogarty, LMR, Foster, C, Glazebrook, K, Goodwin, M, Green, A, Gunawardhana, ML, Hampton, E, Ho, IT, Hopkins, AM, Kewley, L, Lawrence, JS, Leon-Saval, SG, Leslie, S, McElroy, R, Lewis, G, Liske, J, López-Sánchez, R, Mahajan, S, Medling, AM, Metcalfe, N, Meyer, M, Mould, J, Obreschkow, D, O'Toole, S, Pracy, M, Richards, SN, Shanks, T, Sharp, R, Sweet, SM, Thomas, AD, Tonini, C, Walcher, CJ, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
- Abstract
The SAMI Galaxy Survey will observe 3400 galaxies with the Sydney-AAO Multi-object Integral-field spectrograph (SAMI) on the Anglo-Australian Telescope in a 3-yr survey which began in 2013. We present the throughput of the SAMI system, the science basis and specifications for the target selection, the survey observation plan and the combined properties of the selected galaxies. The survey includes four volume-limited galaxy samples based on cuts in a proxy for stellar mass, along with low-stellar-mass dwarf galaxies all selected from the Galaxy And Mass Assembly (GAMA) survey. The GAMA regions were selected because of the vast array of ancillary data available, including ultraviolet through to radio bands. These fields are on the celestial equator at 9, 12 and 14.5 h, and cover a total of 144 deg2 (in GAMA-I). Higher density environments are also included with the addition of eight clusters. The clusters have spectroscopy from 2-degree Field Galaxy Redshift Survey (2dFGRS) and Sloan Digital Sky Survey (SDSS) and photometry in regions covered by the SDSS and/or VLT Survey Telescope/ATLAS. The aim is to cover a broad range in stellar mass and environment, and therefore the primary survey targets cover redshifts 0.004
- Published
- 2015
17. The SAMI Galaxy Survey: Cubism and covariance, putting round pegs into square holes
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Sharp, R, Allen, JT, Fogarty, LMR, Croom, SM, Cortese, L, Green, AW, Nielsen, J, Richards, SN, Scott, N, Taylor, EN, Barnes, LA, Bauer, AE, Birchall, M, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Cecil, GN, Colless, M, Couch, WJ, Drinkwater, MJ, Driver, S, Foster, C, Goodwin, M, Gunawardhana, MLP, Ho, IT, Hampton, EJ, Hopkins, AM, Jones, H, Konstantopoulos, IS, Lawrence, JS, Leslie, SK, Lewis, GF, Liske, J, López-Sánchez, R, Lorente, NPF, McElroy, R, Medling, AM, Mahajan, S, Mould, J, Parker, Q, Pracy, MB, Obreschkow, D, Owers, MS, Schaefer, AL, Sweet, SM, Thomas, AD, Tonini, C, Walcher, CJ, Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204, Sharp, R, Allen, JT, Fogarty, LMR, Croom, SM, Cortese, L, Green, AW, Nielsen, J, Richards, SN, Scott, N, Taylor, EN, Barnes, LA, Bauer, AE, Birchall, M, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Bryant, JJ, Cecil, GN, Colless, M, Couch, WJ, Drinkwater, MJ, Driver, S, Foster, C, Goodwin, M, Gunawardhana, MLP, Ho, IT, Hampton, EJ, Hopkins, AM, Jones, H, Konstantopoulos, IS, Lawrence, JS, Leslie, SK, Lewis, GF, Liske, J, López-Sánchez, R, Lorente, NPF, McElroy, R, Medling, AM, Mahajan, S, Mould, J, Parker, Q, Pracy, MB, Obreschkow, D, Owers, MS, Schaefer, AL, Sweet, SM, Thomas, AD, Tonini, C, Walcher, CJ, and Foster-Guanzon, Caroline ; https://orcid.org/0000-0003-0247-1204
- Abstract
We present a methodology for the regularization and combination of sparse sampled and irregularly gridded observations from fibre-optic multiobject integral field spectroscopy. The approach minimizes interpolation and retains image resolution on combining subpixel dithered data. We discuss the methodology in the context of the Sydney-AAO multiobject integral field spectrograph (SAMI) Galaxy Survey underway at the Anglo-Australian Telescope. The SAMI instrument uses 13 fibre bundles to perform high-multiplex integral field spectroscopy across a 1° diameter field of view. The SAMI Galaxy Survey is targeting ~3000 galaxies drawn from the full range of galaxy environments. We demonstrate the subcritical sampling of the seeing and incomplete fill factor for the integral field bundles results in only a 10 per cent degradation in the final image resolution recovered. We also implement a new methodology for tracking covariance between elements of the resulting data cubes which retains 90 per cent of the covariance information while incurring only a modest increase in the survey data volume.
- Published
- 2015
18. The SAMI galaxy survey: The discovery of a luminous, low-metallicity HII complex in the dwarf galaxy GAMA J141103.98-003242.3
- Author
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Richards, SN, Schaefer, AL, López-Sánchez, AR, Croom, SM, Bryant, JJ, Sweet, SM, Konstantopoulos, IS, Allen, JT, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Fogarty, LMR, Goodwin, M, Green, AW, Ho, IT, Kewley, LJ, Koribalski, BS, Lawrence, JS, Owers, MS, Sadler, EM, Sharp, R, Richards, SN, Schaefer, AL, López-Sánchez, AR, Croom, SM, Bryant, JJ, Sweet, SM, Konstantopoulos, IS, Allen, JT, Bland-Hawthorn, J, Bloom, JV, Brough, S ; https://orcid.org/0000-0002-9796-1363, Fogarty, LMR, Goodwin, M, Green, AW, Ho, IT, Kewley, LJ, Koribalski, BS, Lawrence, JS, Owers, MS, Sadler, EM, and Sharp, R
- Published
- 2014
19. The SAMI pilot survey: The kinematic morphology-density relation in Abell 85, Abell 168 and Abell 2399
- Author
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Fogarty, LMR, Scott, N, Owers, MS, Brough, S ; https://orcid.org/0000-0002-9796-1363, Croom, SM, Pracy, MB, Houghton, RCW, Bland-Hawthorn, J, Colless, M, Davies, RL, Heath Jones, D, Allen, JT, Bryant, JJ, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Richards, S, Cortese, L, Sharp, R, Fogarty, LMR, Scott, N, Owers, MS, Brough, S ; https://orcid.org/0000-0002-9796-1363, Croom, SM, Pracy, MB, Houghton, RCW, Bland-Hawthorn, J, Colless, M, Davies, RL, Heath Jones, D, Allen, JT, Bryant, JJ, Goodwin, M, Green, AW, Konstantopoulos, IS, Lawrence, JS, Richards, S, Cortese, L, and Sharp, R
- Published
- 2014
20. Future Australian Severe Thunderstorm Environments. Part I: A Novel Evaluation and Climatology of Convective Parameters from Two Climate Models for the Late Twentieth Century
- Author
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Allen, JT, Karoly, DJ, Walsh, KJ, Allen, JT, Karoly, DJ, and Walsh, KJ
- Abstract
The influence of a warming climate on the occurrence of severe thunderstorms over Australia is, as yet, poorly understood. Based on methods used in the development of a climatology of observed severe thunderstorm environments over the continent, two climate models [Commonwealth Scientific and Industrial Research Organisation Mark, version 3.6 (CSIRO Mk3.6) and the Cubic-Conformal Atmospheric Model (CCAM)] have been used to produce simulated climatologies of ingredients and environments favorable to severe thunderstorms for the late twentieth century (1980–2000). A novel evaluation of these model climatologies against data from both the ECMWF Interim Re-Analysis (ERA-Interim) and reports of severe thunderstorms from observers is used to analyze the capability of the models to represent convective environments in the current climate. This evaluation examines the representation of thunderstorm-favorable environments in terms of their frequency, seasonal cycle, and spatial distribution, while presenting a framework for future evaluations of climate model convective parameters. Both models showed the capability to explain at least 75% of the spatial variance in both vertical wind shear and convective available potential energy (CAPE). CSIRO Mk3.6 struggled to either represent the diurnal cycle over a large portion of the continent or resolve the annual cycle, while in contrast CCAM showed a tendency to underestimate CAPE and 0–6-km bulk magnitude vertical wind shear (S06). While spatial resolution likely contributes to rendering of features such as coastal moisture and significant topography, the distribution of severe thunderstorm environments is found to have greater sensitivity to model biases. This highlights the need for a consistent approach to evaluating convective parameters and severe thunderstorm environments in present-day climate: an example of which is presented here.
- Published
- 2014
21. A climatology of Australian severe thunderstorm environments 1979-2011: inter-annual variability and ENSO influence
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Allen, JT, Karoly, DJ, Allen, JT, and Karoly, DJ
- Published
- 2014
22. Future Australian Severe Thunderstorm Environments. Part II: The Influence of a Strongly Warming Climate on Convective Environments
- Author
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Allen, JT, Karoly, DJ, Walsh, KJ, Allen, JT, Karoly, DJ, and Walsh, KJ
- Abstract
The influence of a warming climate on the occurrence of severe thunderstorm environments in Australia was explored using two global climate models: Commonwealth Scientific and Industrial Research Organisation Mark, version 3.6 (CSIRO Mk3.6), and the Cubic-Conformal Atmospheric Model (CCAM). These models have previously been evaluated and found to be capable of reproducing a useful climatology for the twentieth-century period (1980–2000). Analyzing the changes between the historical period and high warming climate scenarios for the period 2079–99 has allowed estimation of the potential convective future for the continent. Based on these simulations, significant increases to the frequency of severe thunderstorm environments will likely occur for northern and eastern Australia in a warmed climate. This change is a response to increasing convective available potential energy from higher continental moisture, particularly in proximity to warm sea surface temperatures. Despite decreases to the frequency of environments with high vertical wind shear, it appears unlikely that this will offset increases to thermodynamic energy. The change is most pronounced during the peak of the convective season, increasing its length and the frequency of severe thunderstorm environments therein, particularly over the eastern parts of the continent. The implications of this potential increase are significant, with the overall frequency of potential severe thunderstorm days per year likely to rise over the major population centers of the east coast by 14% for Brisbane, 22% for Melbourne, and 30% for Sydney. The limitations of this approach are then discussed in the context of ways to increase the confidence of predictions of future severe convection.
- Published
- 2014
23. Growth factors in idiopathic pulmonary fibrosis: relative roles
- Author
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Allen, JT and Spiteri, MA
- Subjects
health_and_wellbeing ,R1 - Abstract
Treatment of idiopathic pulmonary fibrosis patients has evolved very slowly; the fundamental approach of corticosteroids alone or in combination with other immunosuppressive agents has had little impact on long-term survival. The continued use of corticosteroids is justified because of the lack of a more effective alternative. Current research indicates that the mechanisms driving idiopathic pulmonary fibrosis reflect abnormal, dysregulated wound healing within the lung, involving increased activity and possibly exaggerated responses by a spectrum of profibrogenic growth factors. An understanding of the roles of these growth factors, and the way in which they modulate events at cellular level, could lead to more targeted therapeutic strategies, improving patients' quality of life and survival.
- Published
- 2002
24. First science with SAMI: A serendipitously discovered galactic wind in ESO 185-G031
- Author
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Fogarty, LMR, Bland-Hawthorn, J, Croom, SM, Green, AW, Bryant, JJ, Lawrence, JS, Richards, S, Allen, JT, Bauer, AE, Birchall, MN, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Ellis, SC, Farrell, T, Goodwin, M, Heald, R, Hopkins, AM, Horton, A, Jones, DH, Lee, S, Lewis, G, López-Sánchez, AR, Miziarski, S, Trowland, H, Leon-Saval, SG, Min, SS, Trinh, C, Cecil, G, Veilleux, S, Kreimeyer, K, Fogarty, LMR, Bland-Hawthorn, J, Croom, SM, Green, AW, Bryant, JJ, Lawrence, JS, Richards, S, Allen, JT, Bauer, AE, Birchall, MN, Brough, S ; https://orcid.org/0000-0002-9796-1363, Colless, M, Ellis, SC, Farrell, T, Goodwin, M, Heald, R, Hopkins, AM, Horton, A, Jones, DH, Lee, S, Lewis, G, López-Sánchez, AR, Miziarski, S, Trowland, H, Leon-Saval, SG, Min, SS, Trinh, C, Cecil, G, Veilleux, S, and Kreimeyer, K
- Abstract
We present the first scientific results from the Sydney-AAO Multi-Object IFS (SAMI) at the Anglo-Australian Telescope. This unique instrument deploys 13 fused fiber bundles (hexabundles) across a one-degree field of view allowing simultaneous spatially resolved spectroscopy of 13 galaxies. During the first SAMI commissioning run, targeting a single galaxy field, one object (ESO 185-G031) was found to have extended minor axis emission with ionization and kinematic properties consistent with a large-scale galactic wind. The importance of this result is twofold: (1) fiber bundle spectrographs are able to identify low surface brightness emission arising from extranuclear activity and (2) such activity may be more common than presently assumed because conventional multi-object spectrographs use single-aperture fibers and spectra from these are nearly always dominated by nuclear emission. These early results demonstrate the extraordinary potential of multi-object hexabundle spectroscopy in future galaxy surveys. © 2012. The American Astronomical Society. All rights reserved..
- Published
- 2012
25. Timing of nutrient depletion, diatom dominance and a lower-boundary estimate of export production for Irminger Basin, North Atlantic
- Author
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Henson, SA, primary, Sanders, R, additional, Holeton, C, additional, and Allen, JT, additional
- Published
- 2006
- Full Text
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26. Th2 cytokines exert a dominant influence on epithelial cell expression of the major group human rhinovirus receptor, ICAM-1
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Bianco, A, primary, Sethi, SK, additional, Allen, JT, additional, Knight, RA, additional, and Spiteri, MA, additional
- Published
- 1998
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27. Hypothenar hammer syndrome
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Vargas C, Ettien Jt, and Allen Jt
- Subjects
Male ,medicine.medical_specialty ,Hook ,Brachial Artery ,medicine.medical_treatment ,Ischemia ,Anastomosis ,Fingers ,medicine.artery ,medicine ,Humans ,Ulnar artery ,business.industry ,Primary resection ,General Medicine ,Syndrome ,Middle Aged ,medicine.disease ,Surgery ,body regions ,Occupational Diseases ,Radiography ,Sympathectomy ,Hypothenar hammer syndrome ,business - Abstract
The hypothenar hammer syndrome is a distinct entity of digital ischemia caused by the repetitive compression of the distal ulnar artery against the hook of the hamate. Definite diagnosis should most likely rely on selective arteriography. Primary resection with anastomosis and cervicodorsal sympathectomy have both been proposed as treatment. Early recognition of the syndrome is important.
- Published
- 1981
28. Psychogenic polydipsia: unusual cause for hydronephrosis
- Author
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Harrison, RB, primary, Ramchandani, P, additional, and Allen, JT, additional
- Published
- 1979
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29. Carbohydrate supplementation maintains physical performance during short-term energy deficit despite reductions in exogenous glucose oxidation.
- Author
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Margolis LM, Allen JT, Murphy NE, Carrigan CT, Howard EE, Barney DE, Drummer DJ, Michalak J, Ferrando AA, Pasiakos SM, and Gwin JA
- Subjects
- Humans, Male, Adult, Young Adult, Dietary Carbohydrates pharmacology, Dietary Supplements, Muscle, Skeletal metabolism, Muscle, Skeletal drug effects, Exercise physiology, Glycogen metabolism, Female, Longitudinal Studies, Oxidation-Reduction, Energy Metabolism physiology, Glucose metabolism, Physical Functional Performance
- Abstract
Exogenous glucose oxidation is reduced 55% during aerobic exercise after 3 days of complete starvation. Whether energy deficits more commonly experienced by athletes and military personnel similarly affect exogenous glucose oxidation and what impact this has on physical performance remains undetermined. This randomized, longitudinal parallel study aimed to assess the effects of varying magnitudes of energy deficit (DEF) on exogenous glucose oxidation and physical performance compared with energy balance (BAL). Participants consumed a 4-day BAL diet, followed by a 6-day 20% ( n = 10), 40% ( n = 10), or 60% ( n = 10) DEF diet. At the end of each energy phase, participants performed 90-min of steady-state cycle ergometry (56 ± 3% V̇o
2peak ) while consuming a glucose drink (80 g), followed by a time to exhaustion (TTE) performance test. Substrate oxidation (g/min) was determined by indirect calorimetry and13 C-glucose. Muscle glycogen (mmol/kg dry wt) and transcript accumulation were assessed in rested fasted muscle collected before exercise in each phase. Muscle glycogen was lower ( P = 0.002) during DEF (365 ± 179) than BAL (456 ± 125), regardless of group. Transcriptional regulation of glucose uptake ( GLUT4 and IRS2 ) and glycogenolysis ( HKII and PKM ) were lower ( P < 0.05) during DEF than BAL, independent of group. Regardless of group, exogenous glucose oxidation was 10% lower ( P < 0.001) during DEF (0.38 ± 0.08) than BAL (0.42 ± 0.08). There was no evidence of a difference in TTE between BAL and DEF or between groups. In conclusion, despite modest reduction in exogenous glucose oxidative capacity during energy deficit, physical performance was similar compared with balance. NEW & NOTEWORTHY Short-term (6-day) energy deficit reduced exogenous glucose oxidation during exercise. Though less exogenous glucose was used for fuel, young healthy individuals appear to have a metabolic resilience to short-term periods of low energy availability, with no observed differences in the ability to take up and oxidize exogenous glucose between minimal (20%), moderate (40%), and severe (60%) energy deficits. Similar metabolic responses to carbohydrate supplementation independent of deficit severity likely contributed to sustainment of physical performance.- Published
- 2025
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30. Consuming Whey Protein with Added Essential Amino Acids, Not Carbohydrate, Maintains Postexercise Anabolism While Underfed.
- Author
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Gwin JA, Church DD, Allen JT, Wilson MA, Carrigan CT, Murphy NE, Varanoske AN, Margolis LM, Wolfe RR, Ferrando AA, and Pasiakos SM
- Subjects
- Humans, Adult, Male, Female, Young Adult, Muscle Proteins metabolism, Muscle Proteins biosynthesis, Energy Intake, Whey Proteins administration & dosage, Amino Acids, Essential administration & dosage, Amino Acids, Essential metabolism, Dietary Carbohydrates administration & dosage, Dietary Carbohydrates metabolism, Exercise physiology, Energy Metabolism
- Abstract
Purpose: Energy deficiency decreases muscle protein synthesis (MPS), possibly due to greater whole-body essential amino acid (EAA) requirements and reliance on energy stores. Whether energy deficit-induced anabolic resistance is overcome with non-nitrogenous supplemental energy or if increased energy as EAA is needed is unclear. We tested the effects of energy as EAA or carbohydrate, combined with an EAA-enriched whey protein, on postexercise MPS (%·h -1 ) and whole-body protein turnover (g protein·240 min -1 )., Methods: Seventeen adults (mean ± SD; age: 26 ± 6 yr, body mass index: 25 ± 3 kg·m -2 ) completed a randomized, parallel study including two 5-d energy conditions (BAL; energy balance; daily energy requirements (DEF), -30% ± 3% energy requirements) separated by ≥7 d. Volunteers consumed EAA-enriched whey with added EAA (+EAA; 304 kcal, 56 g protein, 48 g EAA, 17 g carbohydrate, 2 g fat; n = 8) or added carbohydrate (+CHO; 311 kcal, 34 g protein, 24 g EAA, 40 g carbohydrate, 2 g fat; n = 9) following exercise. MPS and whole-body protein synthesis (PS), breakdown (PB), and net balance (NET; PS-PB) were estimated postexercise with isotope kinetics., Results: MPS rates were greater in +EAA (0.083 ± 0.02) than +CHO (0.059 ± 0.01; P = 0.015) during daily energy requirements, but similar during BAL ( P = 0.45) and across energy conditions within treatments ( P = 0.056). PS rates were greater for +EAA (BAL, 117.9 ± 16.5; daily energy requirements, 110.3 ± 14.8) than +CHO (BAL, 81.6 ± 8.0; daily energy requirements, 83.8 ± 5.9 g protein·240 min -1 ; both P < 0.001) and greater during BAL than daily energy requirements in +EAA ( P = 0.045). PB rates were less in +EAA (8.0 ± 16.5) than +CHO (37.8 ± 7.6 g protein·240 min -1 ; P < 0.001), and NET was greater in +EAA (106.1 ± 6.3) than +CHO (44.8 ± 8.5 g protein·240 min -1 ; P < 0.001)., Conclusions: These data suggest that supplementing EAA-enriched whey protein with more energy as EAA, not carbohydrate, maintains postexercise MPS during energy deficit at rates comparable to those observed during energy balance., (Copyright © 2025 Written work prepared by employees of the Federal Government as part of their official duties is, under the U.S. Copyright Act, a “work of the United States Government” for which copyright protection under Title 17 of the United States Code is not available. As such, copyright does not extend to the contributions of employees of the Federal Government.)
- Published
- 2025
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31. Ketone monoester plus high-dose glucose supplementation before exercise does not affect immediate post-exercise erythropoietin concentrations versus glucose alone.
- Author
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Howard EE, Allen JT, McNiff JL, Small SD, O'Fallon KS, and Margolis LM
- Subjects
- Humans, Male, Adult, Blood Glucose metabolism, Cross-Over Studies, Ketones blood, Ketones administration & dosage, Young Adult, Dietary Carbohydrates administration & dosage, Lactic Acid blood, Insulin blood, Erythropoietin administration & dosage, Erythropoietin blood, Exercise physiology, Dietary Supplements, Glucose metabolism, Glucose administration & dosage
- Abstract
The objective of this study was to examine the effect of consuming ketone monoester plus a high dose of carbohydrate from glucose (KE + CHO) on the change in erythropoietin (EPO) concentrations during load carriage exercise compared with carbohydrate (CHO) alone. Using a randomized, crossover design, 12 males consumed KE + CHO (573 mg KE/kg body mass, 110 g glucose) or CHO (110 g glucose) 30 min before 4 miles of self-paced treadmill exercise (KE + CHO:51 ± 13%, CHO: 52 ± 12% V̇O
2peak ) wearing a weighted vest (30% body mass; 25 ± 3 kg). Blood samples for analysis were obtained under resting fasted conditions before (Baseline) consuming the KE + CHO or CHO supplement and immediately after exercise (Post). βHB increased (p < 0.05) from Baseline to Post in KE + CHO, with no change in CHO. Glucose and glycerol increased (p < 0.05) from Baseline to Post in CHO, with no effect of time in KE + CHO. Insulin and lactate increased (p < 0.05) from Baseline to Post independent of treatment. EPO increased (p < 0.05) from Baseline to Post in KE + CHO and CHO with no difference between treatments. Although KE + CHO altered βHB, glucose, and glycerol concentrations, results from this study suggest that KE + CHO supplementation before load carriage exercise does not enhance immediate post-exercise increases in EPO compared with CHO alone., (Published 2024. This article is a U.S. Government work and is in the public domain in the USA. Physiological Reports published by Wiley Periodicals LLC on behalf of The Physiological Society and the American Physiological Society.)- Published
- 2024
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32. Pioglitazone does not enhance exogenous glucose oxidation or metabolic clearance rate during aerobic exercise in men under acute high-altitude exposure.
- Author
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Margolis LM, Wilson MA, Drummer DJ, Carrigan CT, Murphy NE, Allen JT, Dawson MA, Mantzoros CS, Young AJ, and Pasiakos SM
- Subjects
- Humans, Male, Young Adult, Adult, Metabolic Clearance Rate, Blood Glucose metabolism, Blood Glucose drug effects, Insulin blood, Insulin metabolism, Pioglitazone administration & dosage, Pioglitazone pharmacology, Oxidation-Reduction, Exercise physiology, Cross-Over Studies, Glucose metabolism, Altitude, Hypoglycemic Agents administration & dosage, Hypoglycemic Agents pharmacology, Hypoglycemic Agents pharmacokinetics
- Abstract
Insulin insensitivity decreases exogenous glucose oxidation and metabolic clearance rate (MCR) during aerobic exercise in unacclimatized lowlanders at high altitude (HA). Whether use of an oral insulin sensitizer before acute HA exposure enhances exogenous glucose oxidation is unclear. This study investigated the impact of pioglitazone (PIO) on exogenous glucose oxidation and glucose turnover compared with placebo (PLA) during aerobic exercise at HA. With the use of a randomized crossover design, native lowlanders ( n = 7 males, means ± SD, age: 23 ± 6 yr, body mass: 84 ± 11 kg) consumed 145 g (1.8 g/min) of glucose while performing 80 min of steady-state (1.43 ± 0.16 V̇o
2 L/min) treadmill exercise at HA (460 mmHg; [Formula: see text] 96.6 mmHg) following short-term (5 days) use of PIO (15 mg oral dose per day) or PLA (microcrystalline cellulose pill). Substrate oxidation and glucose turnover were determined using indirect calorimetry and stable isotopes ([13 C]glucose and 6,6-[2 H2 ]glucose). Exogenous glucose oxidation was not different between PIO (0.31 ± 0.03 g/min) and PLA (0.32 ± 0.09 g/min). Total carbohydrate oxidation (PIO: 1.65 ± 0.22 g/min, PLA: 1.68 ± 0.32 g/min) or fat oxidation (PIO: 0.10 ± 0.0.08 g/min, PLA: 0.09 ± 0.07 g/min) was not different between treatments. There was no treatment effect on glucose rate of appearance (PIO: 2.46 ± 0.27, PLA: 2.43 ± 0.27 mg/kg/min), disappearance (PIO: 2.19 ± 0.17, PLA: 2.20 ± 0.22 mg/kg/min), or MCR (PIO: 1.63 ± 0.37, PLA: 1.73 ± 0.40 mL/kg/min). Results from this study indicate that PIO is not an effective intervention to enhance exogenous glucose oxidation or MCR during acute HA exposure. Lack of effect with PIO suggests that the etiology of glucose metabolism dysregulation during acute HA exposure may not result from insulin resistance in peripheral tissues. NEW & NOTEWORTHY Short-term (5 days) use of the oral insulin sensitizer pioglitazone does not alter circulating glucose or insulin responses to enhance exogenous glucose oxidation during steady-state aerobic exercise in young healthy men under simulated acute (8 h) high-altitude (460 mmHg) conditions. These results indicate that dysregulations in glucose metabolism in native lowlanders sojourning at high altitude may not be due to insulin resistance at peripheral tissue.- Published
- 2024
- Full Text
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33. Effective menopause education methods: addressing the needs of current medical trainees.
- Author
-
Allen JT
- Subjects
- Female, Humans, Counseling, Menopause
- Abstract
Competing Interests: Financial disclosure/conflicts of interest: None reported.
- Published
- 2024
- Full Text
- View/download PDF
34. Pyoderma gangrenosum following gynaecological surgery.
- Author
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Allen JT, Toro D, Lough M, and Griswold L
- Subjects
- Female, Humans, Anti-Bacterial Agents therapeutic use, Skin, Gynecologic Surgical Procedures adverse effects, Pyoderma Gangrenosum diagnosis, Pyoderma Gangrenosum drug therapy, Pyoderma Gangrenosum etiology, Fasciitis, Necrotizing diagnosis
- Abstract
A perimenopausal woman with abnormal uterine bleeding underwent an uncomplicated laparoscopic hysterectomy. Postoperatively, she developed fever, abdominal erythema and pain. Imaging revealed diffuse abdominal wall skin thickening, most pronounced at the right port site with a small area concerning for developing abscess. There was high clinical suspicion for necrotising fasciitis due to rapidly progressive skin deterioration. Despite antibiotics and surgical debridement, her condition progressed. Biopsy of the inflamed tissue confirmed a diagnosis of pyoderma gangrenosum (PG), and treatment with daily prednisone led to rapid improvement of symptoms.Successful diagnosis and treatment of the patient's symptoms required multidisciplinary collaboration among gynaecology, general surgery and dermatology. PG, although a well-known condition among dermatologists, is rarely, if ever, encountered by gynaecologists, and its resemblance to conditions such as necrotising fasciitis complicates early detection and intervention. This case highlights the diagnostic and management challenges associated with PG in the gynaecological setting., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Limited 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2023
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35. Needs assessment of menopause education in United States obstetrics and gynecology residency training programs.
- Author
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Allen JT, Laks S, Zahler-Miller C, Rungruang BJ, Braun K, Goldstein SR, and Schnatz PF
- Subjects
- Female, Pregnancy, Humans, Needs Assessment, Menopause, Obstetrics, Gynecology, Internship and Residency
- Abstract
Objective: This study aimed to assess the variance in menopause education, educational resources, and the needs of obstetrics and gynecology (ObGyn) residency programs by conducting a national survey of program directors (PDs)., Methods: In 2022, an institutional review board-approved Web-based Qualtrics survey was designed and distributed electronically to 145 US ObGyn residency PDs. The survey consists of 15 questions. The main outcomes are reported using descriptive statistics., Results: The survey was completed by 99 of 145 PDs (68.3%). Almost all participants (92.9%) strongly agreed that residents nationwide should have access to a standardized menopause curriculum that could be utilized in their programs. Only 31.3% reported having a menopause curriculum in their residency program. Of the programs with a menopause curriculum, 96.8% reported using lectures, 77.4% reported assigned readings, and 74.2% had either dedicated menopause clinics or other clinics with a high volume of menopausal patients. Of all programs surveyed, only 29.3% reported that trainees had dedicated time assigned to a menopause clinic. A total of 83 of 99 PDs agreed or strongly agreed that their programs needed more menopause educational resources, and most (89.7%) stated they were likely or very likely to use self-paced menopause modules that include performance feedback if available., Conclusions: Data from the needs assessment questionnaire revealed that menopause education and resources vary across residency programs, with the majority lacking a dedicated menopause curriculum. Most PDs expressed a desire for more educational resources and standardized training materials, and preferred to access an online national menopause curriculum., Competing Interests: Financial disclosure/conflicts of interest: C.Z.-M. is the principal investigator on a Merck-funded grant to her institution for a human papillomavirus vaccine study. It is unrelated to this study. S.G. receives ongoing funding from Scynexis, Myovant Sciences, Cook OB/GYN, and Astellas Pharma. The other authors have nothing to disclose., (Copyright © 2023 by The Menopause Society.)
- Published
- 2023
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36. Ketone Monoester Plus Carbohydrate Supplementation Does Not Alter Exogenous and Plasma Glucose Oxidation or Metabolic Clearance Rate During Exercise in Men Compared with Carbohydrate Alone.
- Author
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Howard EE, Allen JT, Coleman JL, Small SD, Karl JP, O'Fallon KS, and Margolis LM
- Subjects
- Humans, Male, Dietary Carbohydrates metabolism, Dietary Supplements, Glucose metabolism, Metabolic Clearance Rate, Oxidation-Reduction, Blood Glucose metabolism, Ketones
- Abstract
Background: Increasing β-hydroxybutyrate (βHB) availability through ketone monoester (KE) plus carbohydrate supplementation is suggested to enhance physical performance by sparing glucose use during exercise. However, no studies have examined the effect of ketone supplementation on glucose kinetics during exercise., Objectives: This exploratory study primarily aimed to determine the effect of KE plus carbohydrate supplementation on glucose oxidation during steady-state exercise and physical performance compared with carbohydrate alone., Methods: Using a randomly assigned, crossover design, 12 men consumed 573 mg KE/kg body mass plus 110 g glucose (KE+CHO) or 110 g glucose (CHO) before and during 90 min of steady-state treadmill exercise [54 ± 3% peak oxygen uptake (V˙O
2peak )] wearing a weighted vest (30% body mass; 25 ± 3 kg). Glucose oxidation and turnover were determined using indirect calorimetry and stable isotopes. Participants performed an unweighted time to exhaustion (TTE; 85% V˙O2peak ) after steady-state exercise and a weighted (25 ± 3 kg) 6.4 km time trial (TT) the next day after consuming a bolus of KE+CHO or CHO. Data were analyzed by paired t-tests and mixed model ANOVA., Results: βHB concentrations were higher (P < 0.05) after exercise [2.1 mM (95% CI: 1.6, .6)] and the TT [2.6 mM (2.1, 3.1)] in KE+CHO compared with CHO. TTE was lower [-104 s (-201, -8)], and TT performance was slower [141 s (19,262)] in KE+CHO than in CHO (P < 0.05). Exogenous [-0.01 g/min (-0.07, 0.04)] and plasma [-0.02 g/min (-0.08, 0.04)] glucose oxidation and metabolic clearance rate {MCR [0.38 mg·kg-1 ·min-1 (-0.79, 1.54)]} were not different, and glucose rate of appearance [-0.51 mg·kg-1 ·min-1 (-0.97, -0.04)], and disappearance [-0.50 mg·kg-1 ·min-1 (-0.96, -0.04)] were lower (P < 0.05) in KE+CHO compared with CHO during steady-state exercise., Conclusions: In the current study, rates of exogenous and plasma glucose oxidation and MCR were not different between treatments during steady-state exercise, suggesting blood glucose utilization is similar between KE+CHO and CHO. KE+CHO supplementation also results in lower physical performance compared with CHO alone. This trial was registered at www., Clinicaltrials: gov as NCT04737694., (Published by Elsevier Inc.)- Published
- 2023
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37. Orally Ingested Probiotic, Prebiotic, and Synbiotic Interventions as Countermeasures for Gastrointestinal Tract Infections in Nonelderly Adults: A Systematic Review and Meta-Analysis.
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Fagnant HS, Isidean SD, Wilson L, Bukhari AS, Allen JT, Agans RT, Lee DM, Hatch-McChesney A, Whitney CC, Sullo E, Porter CK, and Karl JP
- Subjects
- Adult, Humans, Prebiotics, Synbiotics, Probiotics therapeutic use, Gastrointestinal Diseases, Communicable Diseases
- Abstract
Meta-analyses have not examined the prophylactic use of orally ingested probiotics, prebiotics, and synbiotics for preventing gastrointestinal tract infections (GTIs) of various etiologies in adult populations, despite evidence that these gut microbiota-targeted interventions can be effective in treating certain GTIs. This systematic review and meta-analysis aimed to estimate the effects of prophylactic use of orally ingested probiotics, prebiotics, and synbiotics on GTI incidence, duration, and severity in nonelderly, nonhospitalized adults. CENTRAL, PubMed, Scopus, and Web of Science were searched through January 2022. English-language, peer-reviewed publications of randomized, placebo-controlled studies testing an orally ingested probiotic, prebiotic, or synbiotic intervention of any dose for ≥1 wk in adults who were not hospitalized, immunosuppressed, or taking antibiotics were included. Results were analyzed using random-effects meta-analyses of intention-to-treat (ITT) and complete case (CC) cohorts. Heterogeneity was explored by subgroup meta-analysis and meta-regression. The risk of bias was assessed using the Cochrane risk-of-bias 2 tool. Seventeen publications reporting 20 studies of probiotics (n = 16), prebiotics (n = 3), and synbiotics (n = 1) were identified (n > 6994 subjects). In CC and ITT analyses, risk of experiencing ≥1 GTI was reduced with probiotics (CC analysis-risk ratio: 0.86; 95% CI: 0.73, 1.01) and prebiotics (risk ratio: 0.80; 95% CI: 0.66, 0.98). No effects on GTI duration or severity were observed. Sources of heterogeneity included the study population and number of probiotic strains administered but were often unexplained, and a high risk of bias was observed for most studies. The specific effects of individual probiotic strains and prebiotic types could not be assessed owing to a lack of confirmatory studies. Findings indicated that both orally ingested probiotics and prebiotics, relative to placebo, demonstrated modest benefit for reducing GTI risk in nonelderly adults. However, results should be interpreted cautiously owing to the low number of studies, high risk of bias, and unexplained heterogeneity that may include probiotic strain-specific or prebiotic-specific effects. This review was registered at PROSPERO as CRD42020200670., (Published by Elsevier Inc.)
- Published
- 2023
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38. Effects of energy balance on cognitive performance, risk-taking, ambulatory vigilance and mood during simulated military sustained operations (SUSOPS).
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Beckner ME, Lieberman HR, Hatch-McChesney A, Allen JT, Niro PJ, Thompson LA, Karl JP, Gwin JA, Margolis LM, Hennigar SR, McClung JP, and Pasiakos SM
- Subjects
- Humans, Male, Cross-Over Studies, Affect physiology, Cognition physiology, Fatigue psychology, Energy Metabolism, Risk-Taking, Sleep Deprivation, Military Personnel psychology
- Abstract
Sustained operations (SUSOPS) require military personnel to conduct combat and training operations while experiencing physical and cognitive stress and limited sleep. These operations are often conducted in a state of negative energy balance and are associated with degraded cognitive performance and mood. Whether maintaining energy balance can mitigate these declines is unclear. This randomized crossover study assessed the effects of energy balance on cognitive performance, risk-taking propensity, ambulatory vigilance, and mood during a simulated 72-h SUSOPS., Methods: Ten male Soldiers (mean ± SE; 22.4 ± 1.7 y; body weight 87.3 ± 1.1 kg) completed two, 72-h simulated SUSOPS in random order, separated by 7 days of recovery. Each SUSOPS elicited ∼4500 kcal/d total energy expenditure and restricted sleep to 4 h/night. During SUSOPS, participants consumed either an energy-balanced or restricted diet that induced a 43 ± 3% energy deficit. A cognitive test battery was administered each morning and evening to assess: vigilance, working memory, grammatical reasoning, risk-taking propensity, and mood. Real-time ambulatory vigilance was assessed each morning, evening, and night via a wrist-worn monitoring device., Results: Participants exhibited heightened risk-taking propensity (p = 0.047) with lower self-reported self-control (p = 0.021) and fatigue (p = 0.013) during energy deficit compared to during energy balance. Vigilance accuracy (p < 0.001) and working memory (p = 0.040) performance decreased, and vigilance lapses increased (p < 0.001) during SUSOPS, but did not differ by diet. Percentage of correct responses to ambulatory vigilance stimuli varied during SUSOPS (p = 0.019) independent of diet, with generally poorer performance during the morning and night. Total mood disturbance (p = 0.001), fatigue (p < 0.001), tension (p = 0.003), and confusion (p = 0.036) increased whereas vigor decreased (p < 0.001) during SUSOPS, independent of diet., Conclusion: Prolonged physical activity combined with sleep restriction is associated with impaired vigilance, memory, and mood state. Under such conditions, maintaining energy balance prevents increased risk-taking and improves self-control, but does not improve other aspects of cognitive function or mood. Given the small sample in the present study, replication in a larger cohort is warranted., Competing Interests: Declaration of Competing Interest The authors declare that there are no conflicts of interest., (Copyright © 2022. Published by Elsevier Inc.)
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- 2023
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39. Case of postpartum uterine artery pseudoaneurysm associated with von Willebrand disease.
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Wayson J, Allen JT, Laks S, and Allen M
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- Female, Humans, Pregnancy, Cesarean Section adverse effects, Postpartum Period, Uterine Artery diagnostic imaging, Aneurysm, False complications, Aneurysm, False diagnostic imaging, Aneurysm, False therapy, Postpartum Hemorrhage etiology, Postpartum Hemorrhage therapy, Uterine Artery Embolization methods, von Willebrand Diseases complications, von Willebrand Diseases therapy
- Abstract
A woman in early 20s with type 1 von Willebrand disease (vWD) presented to the emergency department with abdominal pain and vaginal bleeding at 5 weeks post partum following primary caesarean section. Imaging revealed a uterine artery pseudoaneurysm (UAP), which is a rare condition that can cause postpartum haemorrhage. Caesarean birth and vWD are two risk factors for pseudoaneurysm. Swift postpartum recognition of a pseudoaneurysm is essential to prevent a potentially life-threatening outcome. Successful diagnosis and treatment of the patient's symptoms required interdisciplinary teamwork between obstetricians, interventional radiologists and haematologists. Uterine artery embolisation (UAE) was performed and complete resolution of the pseudoaneurysm was noted 6 weeks after the procedure. Haemorrhage was averted due to early detection of UAP prior to its rupture, and future fertility was preserved. The patient successfully conceived a second child 1 year after UAE and delivered via caesarean birth without haemorrhage or recurrence of UAP., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Limited 2022. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2022
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40. Orally Ingested Probiotics, Prebiotics, and Synbiotics as Countermeasures for Respiratory Tract Infections in Nonelderly Adults: A Systematic Review and Meta-Analysis.
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Coleman JL, Hatch-McChesney A, Small SD, Allen JT, Sullo E, Agans RT, Fagnant HS, Bukhari AS, and Karl JP
- Subjects
- Adult, Humans, Prebiotics, PubMed, Synbiotics, Probiotics therapeutic use, Respiratory Tract Infections prevention & control
- Abstract
The impact of gut microbiota-targeted interventions on the incidence, duration, and severity of respiratory tract infections (RTIs) in nonelderly adults, and factors moderating any such effects, are unclear. This systematic review and meta-analysis aimed to determine the effects of orally ingested probiotics, prebiotics, and synbiotics compared with placebo on RTI incidence, duration, and severity in nonelderly adults, and to identify potential sources of heterogeneity. Studies were identified by searching CENTRAL, PubMed, Scopus, and Web of Science up to December 2021. English-language, peer-reviewed publications of randomized, placebo-controlled studies that tested an orally ingested probiotic, prebiotic, or synbiotic intervention of any dose for ≥1 wk in adults aged 18-65 y were included. Results were synthesized using intention-to-treat and per-protocol random-effects meta-analysis. Heterogeneity was explored by subgroup meta-analysis and meta-regression. Risk of bias was assessed using the Cochrane risk-of-bias assessment tool for randomized trials version 2 (RoB2). Forty-two manuscripts reporting effects of probiotics (n = 38), prebiotics (n = 2), synbiotics (n = 1) or multiple -biotic types (n = 1) were identified (n = 9179 subjects). Probiotics reduced the risk of experiencing ≥1 RTI (relative risk = 0.91; 95% CI: 0.84, 0.98; P = 0.01), and total days (rate ratio = 0.77; 95% CI: 0.71, 0.83; P < 0.001), duration (Hedges' g = -0.23; 95% CI: -0.39, -0.08; P = 0.004), and severity (Hedges' g = -0.16; 95% CI: -0.29, -0.03; P = 0.02) of RTIs. Effects were relatively consistent across different strain combinations, doses, and durations, although reductions in RTI duration were larger with fermented dairy as the delivery matrix, and beneficial effects of probiotics were not observed in physically active populations. Overall risk of bias was rated as "some concerns" for most studies. In conclusion, orally ingested probiotics, relative to placebo, modestly reduce the incidence, duration, and severity of RTIs in nonelderly adults. Physical activity and delivery matrix may moderate some of these effects. Whether prebiotic and synbiotic interventions confer similar protection remains unclear due to few relevant studies. This trial was registered at https://www.crd.york.ac.uk/prospero/ as CRD42020220213., (Published by Oxford University Press on behalf of the American Society for Nutrition 2022.)
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- 2022
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41. Circulating and skeletal muscle microRNA profiles are more sensitive to sustained aerobic exercise than energy balance in males.
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Margolis LM, Hatch-McChesney A, Allen JT, DiBella MN, Carrigan CT, Murphy NE, Karl JP, Gwin JA, Hennigar SR, McClung JP, and Pasiakos SM
- Subjects
- Adult, Cross-Over Studies, Energy Metabolism, Humans, Male, Muscle, Skeletal metabolism, Rest physiology, Young Adult, Exercise physiology, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
MicroRNAs (miRNAs) regulate molecular processes governing muscle metabolism. Physical activity and energy balance influence both muscle anabolism and substrate metabolism, but whether circulating and skeletal muscle miRNAs mediate those effects remains unknown. This study assessed the impact of sustained physical activity with participants in energy balance (BAL) or deficit (DEF) on circulating and skeletal muscle miRNAs. Using a randomized cross-over design, 10 recreational active healthy males (mean ± SD, 22 ± 5 years, 87 ± 11 kg) completed 72 h of high aerobic exercise-induced energy expenditures in BAL (689 ± 852 kcal/day) or DEF (-2047 ± 920 kcal/day). Blood and muscle samples were collected under rested/fasted conditions before (PRE) and immediately after 120 min load carriage exercise bout at the end (POST) of the 72 h. Trials were separated by 7 days. Circulating and skeletal muscle miRNAs were measured using microarray RT-qPCR. Independent of energy status, 36 circulating miRNAs decreased (P < 0.05), while 10 miRNAs increased and three miRNAs decreased in skeletal muscle (P < 0.05) at POST compared to PRE. Of these, miR-122-5p, miR-221-3p, miR-222-3p and miR-24-3p decreased in circulation and increased in skeletal muscle. Two circulating (miR-145-5p and miR-193a-5p) and four skeletal muscle (miR-21-5p, miR-372-3p, miR-34a-5p and miR-9-5p) miRNAs had time-by-treatment effects (P < 0.05). These data suggest that changes in miRNA profiles are more sensitive to increased physical activity compared to energy status, and that changes in circulating miRNAs in response to high levels of daily aerobic exercise are not reflective of changes in skeletal muscle miRNAs. KEY POINTS: Circulating and skeletal muscle miRNA profiles are more sensitive to high levels of aerobic exercise-induced energy expenditure compared to energy status. Changes in circulating miRNA in response to high levels of daily sustained aerobic exercise are not reflective of changes in skeletal muscle miRNA., (© 2022 The Authors. The Journal of Physiology © 2022 The Physiological Society.)
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- 2022
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42. Weight management behaviours mediate the relationship between weight cycling, BMI and diet quality among US Army Soldiers.
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Allen JT, Jayne J, Karl JP, McGraw SM, O'Connor K, DiChiara A, and Cole RE
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- Male, Humans, Female, Body Mass Index, Cross-Sectional Studies, Diet, Body Weight, Health Behavior, Weight Cycling, Military Personnel
- Abstract
Weight cycling is prevalent in sports/professions with body composition standards, and has been associated with weight management behaviours that may contribute to suboptimal diet quality and weight gain. US Army Soldiers may be at increased risk of weight cycling relative to civilians due to mandated body composition standards. However, the relationship between weight cycling, weight management behaviours, BMI and diet quality among Soldiers is unknown. In this cross-sectional study, 575 Soldiers (89 % enlisted, 90 % male, 23 ± 4 years) at Army installations at Joint Base Elmendorf-Richardson, AK, Joint-Base Lewis McChord, WA, and Fort Campbell, KY completed questionnaires on food frequency, health-related behaviours and history of weight cycling (≥ 3 weight fluctuations ≥ 5 % body weight). Weight cycling was reported by 33 % of Soldiers. Those who reported weight cycling reported higher BMI (27 ± 4 v . 25 ± 3 kg/m
2 , P < 0·001) and higher prevalence of engaging in weight management behaviours prior to body weight screening but did not report lower dietary quality (Healthy Eating Index-2015 (HEI) scores 59 ± 10 v 59 ± 11, P = 0·46) relative to those who did not report weight cycling. Results of mediation analyses suggested that weight cycling may affect BMI both directly ( c' = 1·19, 95 % CI: 0·62, 1·75) and indirectly ( ab = 0·45, 95 % CI: 0·19, 0·75), and HEI scores indirectly ( ab = 0·69, 95 % CI: 0·20, 1·35) through the adoption of weight management behaviours. Weight cycling is common in Soldiers and is associated with higher BMI and higher prevalence of engaging in weight management behaviours that mediate associations between weight cycling, BMI and diet quality.- Published
- 2022
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43. Effects of energy balance on appetite and physiological mediators of appetite during strenuous physical activity: secondary analysis of a randomised crossover trial.
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Karl JP, Hatch-McChesney A, Allen JT, Fagnant HS, Radcliffe PN, Finlayson G, Gwin JA, Margolis LM, Hennigar SR, McClung JP, and Pasiakos SM
- Subjects
- Cross-Over Studies, Ghrelin, Humans, Male, Prospective Studies, Appetite, Energy Intake, Energy Metabolism, Exercise
- Abstract
Energy deficit is common during prolonged periods of strenuous physical activity and limited sleep, but the extent to which appetite suppression contributes is unclear. The aim of this randomised crossover study was to determine the effects of energy balance on appetite and physiological mediators of appetite during a 72-h period of high physical activity energy expenditure (about 9·6 MJ/d (2300 kcal/d)) and limited sleep designed to simulate military operations (SUSOPS). Ten men consumed an energy-balanced diet while sedentary for 1 d (REST) followed by energy-balanced (BAL) and energy-deficient (DEF) controlled diets during SUSOPS. Appetite ratings, gastric emptying time (GET) and appetite-mediating hormone concentrations were measured. Energy balance was positive during BAL (18 (sd 20) %) and negative during DEF (-43 (sd 9) %). Relative to REST, hunger, desire to eat and prospective consumption ratings were all higher during DEF (26 (sd 40) %, 56 (sd 71) %, 28 (sd 34) %, respectively) and lower during BAL (-55 (sd 25) %, -52 (sd 27) %, -54 (sd 21) %, respectively; Pcondition < 0·05). Fullness ratings did not differ from REST during DEF, but were 65 (sd 61) % higher during BAL (Pcondition < 0·05). Regression analyses predicted hunger and prospective consumption would be reduced and fullness increased if energy balance was maintained during SUSOPS, and energy deficits of ≥25 % would be required to elicit increases in appetite. Between-condition differences in GET and appetite-mediating hormones identified slowed gastric emptying, increased anorexigenic hormone concentrations and decreased fasting acylated ghrelin concentrations as potential mechanisms of appetite suppression. Findings suggest that physiological responses that suppress appetite may deter energy balance from being achieved during prolonged periods of strenuous activity and limited sleep.
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- 2021
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44. A 23-Year Severe Hail Climatology Using GridRad MESH Observations.
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Murillo EM, Homeyer CR, and Allen JT
- Abstract
Assessments of spatiotemporal severe hailfall characteristics using hail reports are plagued by serious limitations in report databases, including biases in reported sizes, occurrence time, and location. Multiple studies have used Next Generation Weather Radar (NEXRAD) network observations or environmental hail proxies from reanalyses. Previous work has specifically utilized the single-polarization radar parameter maximum expected size of hail (MESH). In addition to previous work being temporally limited, updates are needed to include recent improvements that have been made to MESH. This study aims to quantify severe hailfall characteristics during a 23-yr period, markedly longer than previous studies, using both radar observations and reanalysis data. First, the improved MESH configuration is applied to the full archive of gridded hourly radar observations known as GridRad (1995-2017). Next, environmental constraints from the Modern-Era Retrospective Analysis for Research and Applications, version 2, are applied to the MESH distributions to produce a corrected hailfall climatology that accounts for the reduced likelihood of hail reaching the ground. Spatial, diurnal, and seasonal patterns show that in contrast to the report climatology indicating one high-frequency hail maximum centered on the Great Plains, the MESH-only method characterizes two regions: the Great Plains and the Gulf Coast. The environmentally filtered MESH climatology reveals improved agreement between report characteristics (frequency, location, and timing) and the recently improved MESH calculation methods, and it reveals an overall increase in diagnosed hail days and westward broadening in the spatial maximum in the Great Plains than that seen in reports.
- Published
- 2021
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45. Energy deficit increases hepcidin and exacerbates declines in dietary iron absorption following strenuous physical activity: a randomized-controlled cross-over trial.
- Author
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Hennigar SR, McClung JP, Hatch-McChesney A, Allen JT, Wilson MA, Carrigan CT, Murphy NE, Teien HK, Martini S, Gwin JA, Karl JP, Margolis LM, and Pasiakos SM
- Subjects
- Adolescent, Adult, Biomarkers blood, Cross-Over Studies, Exercise, Humans, Inflammation blood, Inflammation metabolism, Iron Isotopes, Male, Muscle, Skeletal injuries, Young Adult, Energy Intake, Hepcidins metabolism, Iron, Dietary metabolism
- Abstract
Background: Strenuous physical activity promotes inflammation and depletes muscle glycogen, which may increase the iron regulatory hormone hepcidin. Hepcidin reduces dietary iron absorption and may contribute to declines in iron status frequently observed following strenuous physical activity., Objectives: To determine the effects of strenuous physical activity on hepcidin and dietary iron absorption and whether energy deficit compared with energy balance modifies those effects., Methods: This was a randomized, cross-over, controlled-feeding trial in healthy male subjects (n = 10, mean ± SD age: 22.4 ± 5.4 y, weight: 87.3 ± 10.9 kg) with sufficient iron status (serum ferritin 77.0 ± 36.7 ng/mL). Rest measurements were collected before participants began a 72-h simulated sustained military operation (SUSOPS), designed to elicit high energy expenditure, glycogen depletion, and inflammation, followed by a 7-d recovery period. Two 72-h SUSOPS trials were performed where participants were randomly assigned to consume either energy matched (±10%) to their individual estimated total daily energy expenditure (BAL) or energy at 45% of total daily energy expenditure to induce energy deficit (DEF). On the rest day and at the completion of BAL and DEF, participants consumed a beverage containing 3.8 mg of a stable iron isotope, and plasma isotope appearance was measured over 6 h., Results: Muscle glycogen declined during DEF and was preserved during BAL (-188 ± 179 mmol/kg, P-adjusted < 0.01). Despite similar increases in interleukin-6, plasma hepcidin increased during DEF but not BAL, such that hepcidin was 108% greater during DEF compared with BAL (7.8 ± 12.2 ng/mL, P-adjusted < 0.0001). Peak plasma isotope appearance at 120 min was 74% lower with DEF (59 ± 38% change from 0 min) and 49% lower with BAL (117 ± 81%) compared with rest (230 ± 97%, P-adjusted < 0.01 for all comparisons)., Conclusions: Strenuous physical activity decreases dietary iron absorption compared with rest. Energy deficit exacerbates both the hepcidin response to physical activity and declines in dietary iron absorption compared with energy balance. This trial was registered at clinicaltrials.gov as NCT03524690., (Published by Oxford University Press on behalf of the American Society for Nutrition 2020.)
- Published
- 2021
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46. Coingestion of Carbohydrate and Protein on Muscle Glycogen Synthesis after Exercise: A Meta-analysis.
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Margolis LM, Allen JT, Hatch-McChesney A, and Pasiakos SM
- Subjects
- Humans, Dietary Carbohydrates administration & dosage, Dietary Proteins administration & dosage, Exercise physiology, Glycogen biosynthesis, Muscle, Skeletal metabolism
- Abstract
Introduction/purpose: Evidence suggests that carbohydrate and protein (CHO-PRO) ingestion after exercise enhances muscle glycogen repletion to a greater extent than carbohydrate (CHO) alone. However, there is no consensus at this point, and results across studies are mixed, which may be attributable to differences in energy content and carbohydrate intake relative to body mass consumed after exercise. The purpose of this study was determine the overall effects of CHO-PRO and the independent effects of energy and relative carbohydrate content of CHO-PRO supplementation on postexercise muscle glycogen synthesis compared with CHO alone., Methods: Meta-analysis was conducted on crossover studies assessing the influence of CHO-PRO compared with CHO alone on postexercise muscle glycogen synthesis. Studies were identified in a systematic review from PubMed and Cochrane Library databases. Data are presented as effect size (95% confidence interval [CI]) using Hedges' g. Subgroup analyses were conducted to evaluate effects of isocaloric and nonisocaloric energy content and dichotomized by median relative carbohydrate (high, ≥0.8 g·kg-1⋅h-1; low, <0.8 g·kg-1⋅h-1) content on glycogen synthesis., Results: Twenty studies were included in the analysis. CHO-PRO had no overall effect on glycogen synthesis (0.13, 95% CI = -0.04 to 0.29) compared with CHO. Subgroup analysis found that CHO-PRO had a positive effect (0.26, 95% CI = 0.04-0.49) on glycogen synthesis when the combined intervention provided more energy than CHO. Glycogen synthesis was not significant (-0.05, 95% CI = -0.23 to 0.13) in CHO-PRO compared with CON when matched for energy content. There was no statistical difference of CHO-PRO on glycogen synthesis in high (0.07, 95% CI = -0.11 to 0.22) or low (0.21, 95% CI = -0.08 to 0.50) carbohydrate content compared with CHO., Conclusion: Glycogen synthesis rates are enhanced when CHO-PRO are coingested after exercise compared with CHO only when the added energy of protein is consumed in addition to, not in place of, carbohydrate., (Copyright © 2020 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American College of Sports Medicine.)
- Published
- 2021
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47. Essential amino acid-enriched whey enhances post-exercise whole-body protein balance during energy deficit more than iso-nitrogenous whey or a mixed-macronutrient meal: a randomized, crossover study.
- Author
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Gwin JA, Church DD, Hatch-McChesney A, Allen JT, Wilson MA, Varanoske AN, Carrigan CT, Murphy NE, Margolis LM, Carbone JW, Wolfe RR, Ferrando AA, and Pasiakos SM
- Subjects
- Adult, Amino Acids, Essential administration & dosage, Amino Acids, Essential blood, Body Mass Index, Cross-Over Studies, Dietary Proteins administration & dosage, Dietary Proteins metabolism, Double-Blind Method, Energy Intake, Female, Food, Fortified, Humans, Insulin blood, Male, Meals, Muscle Proteins biosynthesis, Nutrients administration & dosage, Phenylalanine administration & dosage, Time Factors, Tyrosine administration & dosage, Whey administration & dosage, Whey chemistry, Young Adult, Amino Acids, Essential metabolism, Exercise physiology, Nutrients metabolism, Postprandial Period, Proteins metabolism, Whey metabolism
- Abstract
Background: The effects of ingesting varying essential amino acid (EAA)/protein-containing food formats on protein kinetics during energy deficit are undetermined. Therefore, recommendations for EAA/protein food formats necessary to optimize both whole-body protein balance and muscle protein synthesis (MPS) during energy deficit are unknown. We measured protein kinetics after consuming iso-nitrogenous amounts of free-form essential amino acid-enriched whey (EAA + W; 34.7 g protein, 24 g EAA sourced from whey and free-form EAA), whey (WHEY; 34.7 g protein, 18.7 g EAA), or a mixed-macronutrient meal (MEAL; 34.7 g protein, 11.4 g EAA) after exercise during short-term energy deficit., Methods: Ten adults (mean ± SD; 21 ± 4 y; 25.7 ± 1.7 kg/m
2 ) completed a randomized, double-blind crossover study consisting of three, 5 d energy-deficit periods (- 30 ± 3% of total energy requirements), separated by 14 d. Whole-body protein synthesis (PS), breakdown (PB), and net balance (NET) were determined at rest and in response to combination exercise consisting of load carriage treadmill walking, deadlifts, and box step-ups at the end of each energy deficit using L-[2 H5 ]-phenylalanine and L-[2 H2 ]-tyrosine infusions. Treatments were ingested immediately post-exercise. Mixed-muscle protein synthesis (mixed-MPS) was measured during exercise through recovery., Results: Change (Δ postabsorptive + exercise to postprandial + recovery [mean treatment difference (95%CI)]) in whole-body (g/180 min) PS was 15.8 (9.8, 21.9; P = 0.001) and 19.4 (14.8, 24.0; P = 0.001) greater for EAA + W than WHEY and MEAL, respectively, with no difference between WHEY and MEAL. ΔPB was - 6.3 (- 11.5, - 1.18; P = 0.02) greater for EAA + W than WHEY and - 7.7 (- 11.9, - 3.6; P = 0.002) greater for MEAL than WHEY, with no difference between EAA + W and MEAL. ΔNET was 22.1 (20.5, 23.8; P = 0.001) and 18.0 (16.5, 19.5; P = 0.00) greater for EAA + W than WHEY and MEAL, respectively, while ΔNET was 4.2 (2.7, 5.6; P = 0.001) greater for MEAL than WHEY. Mixed-MPS did not differ between treatments., Conclusions: While mixed-MPS was similar across treatments, combining free-form EAA with whey promotes greater whole-body net protein balance during energy deficit compared to iso-nitrogenous amounts of whey or a mixed-macronutrient meal., Trial Registration: ClinicalTrials.gov, Identifier no. NCT04004715 . Retrospectively registered 28 June 2019, first enrollment 6 June 2019.- Published
- 2021
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48. Decreasing Endoscopy No-Shows Using a Lean Improvement Framework.
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Finn RT, Lloyd B, Patel YA, Allen JT, Cornejo J, Davis A, McIntosh T, Ferguson S, Sims K, Sudaj S, Taheri J, Burr NA, Provenzale D, and Gellad ZF
- Subjects
- Endoscopy, Gastrointestinal standards, Follow-Up Studies, Humans, Retrospective Studies, Digestive System Diseases diagnosis, Endoscopy, Gastrointestinal statistics & numerical data, Quality Improvement, Total Quality Management methods
- Published
- 2019
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49. Echinococcus granulosus cyst fluid enhances epithelial-mesenchymal transition.
- Author
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Mohammed AA, Allen JT, and Rogan MT
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- A549 Cells, Animals, Antigens, CD biosynthesis, Cadherins biosynthesis, Cell Line, Cell Movement physiology, Cell Proliferation physiology, Cyst Fluid parasitology, Cysts parasitology, Echinococcosis parasitology, Fibronectins biosynthesis, Humans, Liver parasitology, Liver pathology, Liver Diseases parasitology, Lung cytology, Lung parasitology, Lung pathology, Respiratory Mucosa cytology, Respiratory Mucosa parasitology, Respiratory Mucosa pathology, Sheep, Vimentin biosynthesis, Cyst Fluid immunology, Echinococcosis immunology, Echinococcus granulosus immunology, Epithelial Cells metabolism, Epithelial-Mesenchymal Transition immunology
- Abstract
Cystic echinococcosis is characterized by fluid-filled hydatid cysts in the liver and lungs. The cysts are surrounded by a host fibrous layer (the pericyst) which acts to isolate the parasite from surrounding tissues. Previous studies in liver cysts have indicated that the parasite may be a stimulating fibrosis. The aim of this study was to investigate whether hydatid cyst fluid (HCF) could influence the potential for fibrosis to occur in lung tissue by stimulating epithelial to mesenchymal transition (EMT) in a human lung epithelial cell line. An adenocarcinoma-derived alveolar basal epithelial cell line (A549) was used as a model for human alveolar epithelial cells (AEC II). These were cultured in vitro with HCF (UK sheep origin). Assays to investigate cell proliferation, cell migration and expression of cytoskeletal markers showed that HCF could stimulate changes indicative of EMT, including enhanced cell proliferation and migration; increased expression of mesenchymal cytoskeletal markers (fibronectin and vimentin) accompanied by a down-regulation of an epithelial marker (E-cadherin). Molecules within hydatid cyst fluid are capable of inducing phenotypic changes in A549 cells indicating that the parasite has the potential to modify lung epithelial cells which could contribute to fibrotic reactions., (© 2018 John Wiley & Sons Ltd.)
- Published
- 2018
- Full Text
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50. Experiences of a commercial weight-loss programme after primary care referral: a qualitative study.
- Author
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Allen JT, Cohn SR, and Ahern AL
- Subjects
- Adult, Body Mass Index, Female, Humans, Male, Middle Aged, Monitoring, Physiologic methods, Monitoring, Physiologic psychology, Patient Compliance psychology, Qualitative Research, Referral and Consultation organization & administration, United Kingdom, Obesity psychology, Obesity therapy, Primary Health Care methods, Public-Private Sector Partnerships, Risk Reduction Behavior, Weight Reduction Programs methods
- Abstract
Background: Referral to a commercial weight-loss programme is a cost-effective intervention that is already used within the NHS. Qualitative research suggests this community-based, non-medical intervention accords with participants' view of weight management as a lifestyle issue., Aim: To examine the ways in which participants' attitudes and beliefs about accessing a commercial weight management programme via their doctor relate to their weight-loss experience, and to understand how these contextual factors influence motivation and adherence to the intervention., Design and Setting: A qualitative study embedded in a randomised controlled trial evaluating primary care referral to a commercial weight-loss programme in adults who are overweight or obese in England. The study took place from June-September 2013., Method: Twenty-nine participants (body mass index [BMI] ≥28 kg/m(2); age ≥18 years), who took part in the WRAP (Weight Loss Referrals for Adults in Primary Care) trial, were recruited at their 3-month assessment appointment to participate in a semi-structured interview about their experience of the intervention and weight management more generally. Interviews were audiorecorded, transcribed verbatim, and analysed inductively using a narrative approach., Results: Although participants view the lifestyle-based, non-medical commercial programme as an appropriate intervention for weight management, the referral from the GP and subsequent clinical assessments frame their experience of the intervention as medically pertinent with clear health benefits., Conclusion: Referral by the GP and follow-up assessment appointments were integral to participant experiences of the intervention, and could be adapted for use in general practice potentially to augment treatment effects., (© British Journal of General Practice 2015.)
- Published
- 2015
- Full Text
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