14 results on '"Adam J. Harvey"'
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2. Quantification of MagLIF morphology using the Mallat Scattering Transformation.
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Michael E. Glinsky, Thomas W. Moore, William E. Lewis, Matthew R. Weis, Christopher A. Jennings, David J. Ampleford, Patrick F. Knapp, Eric C. Harding, Matthew R. Gomez, and Adam J. Harvey-Thompson
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- 2020
3. Data-driven assessment of magnetic charged particle confinement parameter scaling in magnetized liner inertial fusion experiments on Z
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William E. Lewis, Owen M. Mannion, D. E. Ruiz, Christopher A. Jennings, Patrick F. Knapp, Matthew R. Gomez, Adam J. Harvey-Thompson, Matthew R. Weis, Stephen A. Slutz, David J. Ampleford, and Kristian Beckwith
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Condensed Matter Physics - Abstract
In magneto-inertial fusion, the ratio of the characteristic fuel length perpendicular to the applied magnetic field R to the α-particle Larmor radius ϱα is a critical parameter setting the scale of electron thermal-conduction loss and charged burn-product confinement. Using a previously developed deep-learning-based Bayesian inference tool, we obtain the magnetic-field fuel-radius product BR∝R/ϱα from an ensemble of 16 magnetized liner inertial fusion (MagLIF) experiments. Observations of the trends in BR are consistent with relative trade-offs between compression and flux loss as well as the impact of mix from 1D resistive radiation magneto-hydrodynamics simulations in all but two experiments, for which 3D effects are hypothesized to play a significant role. Finally, we explain the relationship between BR and the generalized Lawson parameter χ. Our results indicate the ability to improve performance in MagLIF through careful tuning of experimental inputs, while also highlighting key risks from mix and 3D effects that must be mitigated in scaling MagLIF to higher currents with a next-generation driver.
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- 2023
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4. Relationships among misunderstanding, relationship type, channel, and relational satisfaction
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Michael Navarro, Adam J. Harvey, Renee Edwards, Brock T. Adams, and Jonathon K. Frost
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0508 media and communications ,Communication ,05 social sciences ,Relationship Type ,Romantic partners ,Mediated communication ,050801 communication & media studies ,050109 social psychology ,0501 psychology and cognitive sciences ,Channel (broadcasting) ,Psychology ,Social psychology - Abstract
This study examined the relationship between misunderstanding and relational satisfaction, whether friends and romantic partners have different experiences, and the role of channel. Participants (N...
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- 2020
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5. Measuring Mix in MagLIF Experiments at the NIF
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Bradley Pollock, Steven Ross, Michael E. Glinsky, Ryan Lau, John Moody, Eleanor R. Tubman, David Strozzi, Adam J. Harvey-Thomspon, Kristian Beckwith, Evstati Evstatiev, Stephanie Hansen, M. R. Weis, and D. J. Ampleford
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Yield (engineering) ,Materials science ,business.industry ,Mixing (process engineering) ,Plasma ,STRIPS ,Laser ,law.invention ,Physics::Fluid Dynamics ,Optics ,law ,Cylinder ,business ,Astrophysics::Galaxy Astrophysics - Abstract
In the MagLIF ICF scheme, a cylindrical gas volume is laser heated before the walls of the cylinder are driven radially inward to compress the heated gas. Exploring the effects of material from the walls and the laser entrance window mixing into the heated region are important considerations for MagLIF experiments 1 , 2 , 3 ,. The addition of these materials into the heated gas can potentially have detrimental effects, radiatively cooling the gas fill and degrading the yield 4 . The NIF has been used to drive gas-pipe experiments where a tracer element (Ti) is placed on the LEH window or where strips of Ti and Sc are attached to the wall. Spatially and temporally resolved spectroscopic measurements of the Ti and Sc emission indicate the spatial location of these materials at various times during the interaction, assisting future predictions and mitigations of their propagation into the gas-pipe.
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- 2021
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6. Functional cross talk between the Fanconi anemia and ATRX/DAXX histone chaperone pathways promotes replication fork recovery
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Jihyeon Yang, Eric A. Hendrickson, Ryan Walter, Anja Katrin Bielinsky, Jung Eun Yeo, Kai Saito, Alexandra Sobeck, Stacie Ittershagen, Adam J. Harvey, Maya Raghunandan, Orlando D. Schärer, Maureen E. Hoatlin, and Eun-A Lee
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DNA Replication ,X-linked Nuclear Protein ,congenital, hereditary, and neonatal diseases and abnormalities ,DNA Repair ,Origin of replication ,Cell Line ,Histones ,Gene Knockout Techniques ,03 medical and health sciences ,Histone H3 ,0302 clinical medicine ,Death-associated protein 6 ,hemic and lymphatic diseases ,Genetics ,Humans ,DNA Breaks, Double-Stranded ,Molecular Biology ,Genetics (clinical) ,ATRX ,030304 developmental biology ,MRE11 Homologue Protein ,0303 health sciences ,biology ,Fanconi Anemia Complementation Group D2 Protein ,DNA replication ,Recombinational DNA Repair ,General Medicine ,Chromatin Assembly and Disassembly ,DNA Replication Fork ,Chromatin ,Cell biology ,General Article One ,Fanconi Anemia ,Histone ,030220 oncology & carcinogenesis ,biology.protein ,Rad51 Recombinase ,Co-Repressor Proteins ,Molecular Chaperones ,Signal Transduction - Abstract
Fanconi anemia (FA) is a chromosome instability syndrome characterized by increased cancer predisposition. Specifically, the FA pathway functions to protect genome stability during DNA replication. The central FA pathway protein, FANCD2, locates to stalled replication forks and recruits homologous recombination (HR) factors such as CtBP interacting protein (CtIP) to promote replication fork restart while suppressing new origin firing. Here, we identify alpha-thalassemia retardation syndrome X-linked (ATRX) as a novel physical and functional interaction partner of FANCD2. ATRX is a chromatin remodeler that forms a complex with Death domain-associated protein 6 (DAXX) to deposit the histone variant H3.3 into specific genomic regions. Intriguingly, ATRX was recently implicated in replication fork recovery; however, the underlying mechanism(s) remained incompletely understood. Our findings demonstrate that ATRX forms a constitutive protein complex with FANCD2 and protects FANCD2 from proteasomal degradation. ATRX and FANCD2 localize to stalled replication forks where they cooperate to recruit CtIP and promote MRE11 exonuclease-dependent fork restart while suppressing the firing of new replication origins. Remarkably, replication restart requires the concerted histone H3 chaperone activities of ATRX/DAXX and FANCD2, demonstrating that coordinated histone H3 variant deposition is a crucial event during the reinitiation of replicative DNA synthesis. Lastly, ATRX also cooperates with FANCD2 to promote the HR-dependent repair of directly induced DNA double-stranded breaks. We propose that ATRX is a novel functional partner of FANCD2 to promote histone deposition-dependent HR mechanisms in S-phase.
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- 2019
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7. BIO 300, a Nanosuspension of Genistein, Mitigates Radiation-Induced Erectile Dysfunction and Sensitizes Human Prostate Cancer Xenografts to Radiation Therapy
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Diana Newman, Isabel L. Jackson, Michael D. Kaytor, Allen A. Alexander, Zeljko Vujaskovic, Caroline Q. Connors, Rada Pavlovic, Adam J. Harvey, Javed Mahmood, and J. Eley
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Male ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,Transplantation, Heterologous ,Urology ,Mice, Nude ,Genistein ,Blood Pressure ,Radiation-Protective Agents ,030218 nuclear medicine & medical imaging ,Rats, Sprague-Dawley ,Mice ,Random Allocation ,03 medical and health sciences ,chemistry.chemical_compound ,Prostate cancer ,0302 clinical medicine ,Therapeutic index ,Erectile Dysfunction ,Suspensions ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Dosing ,Radiation ,business.industry ,Penile Erection ,Prostate ,Cancer ,Drugs, Investigational ,medicine.disease ,Fibrosis ,Rats ,Transplantation ,Radiation therapy ,Disease Models, Animal ,Radiation Injuries, Experimental ,Erectile dysfunction ,Oncology ,chemistry ,Regional Blood Flow ,030220 oncology & carcinogenesis ,Nanoparticles ,business ,Penis - Abstract
To assess whether BIO 300, a synthetic genistein nanosuspension, improves the therapeutic index in prostate cancer treatment by preventing radiation-induced erectile dysfunction (ED) without reducing tumor radiosensitivity.Male Sprague-Dawley rats were exposed to 25 Gy of 220-kV prostate-confined x-rays. Animals were randomized to receive sham radiation therapy (RT), RT alone, RT with daily BIO 300 at 2 experimental dosing regimens, or RT with daily genistein. Erectile response was evaluated over time. Penile shaft tissue was harvested for histologic analyses. Murine xenograft studies using prostate cancer cell lines determined the effects of BIO 300 dosing on RT efficacy.Prostate-confined RT significantly decreased apomorphine-induced erectile response (P.05 vs sham RT). Erection frequency in animals receiving prophylactic treatment with BIO 300 starting 3 days before RT was similar to sham controls after RT. Treatment with synthetic genistein did not mitigate loss in erectile frequency. At week 14, post-RT treatment with BIO 300 resulted in significantly higher quality of erectile function compared with both the RT arm and the RT arm receiving genistein starting 3 days before irradiation (P.05). In hormone-sensitive and insensitive prostate tumor-bearing mice, BIO 300 administration did not negatively affect radiation-induced tumor growth delay.BIO 300 prevents radiation-induced ED, measured by erection frequency, erectile function, and erection quality, when administered 3 days before RT and continued daily for up to 14 weeks. Data also suggest that BIO 300 administered starting 2 hours after RT mitigates radiation-induced ED. Data provide strong nonclinical evidence to support clinical translation of BIO 300 for mitigation of ED while maintaining treatment response to RT.
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- 2019
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8. Mechanism and therapeutic window of a genistein nanosuspension to protect against hematopoietic-acute radiation syndrome
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Michael R. Landauer, Adam J. Harvey, Regina M. Day, and Michael D. Kaytor
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Male ,Agonist ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,Estrogen receptor ,Genistein ,Radiation-Protective Agents ,Pharmacology ,Injections, Intramuscular ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Suspensions ,Regular Paper ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Estrogen receptor beta ,030304 developmental biology ,0303 health sciences ,Radiation ,business.industry ,Lethal dose ,Dose-Response Relationship, Radiation ,Radiation Exposure ,Total body irradiation ,Hematopoiesis ,Acute Radiation Syndrome ,Receptors, Estrogen ,Mechanism of action ,chemistry ,030220 oncology & carcinogenesis ,Nanoparticles ,medicine.symptom ,business ,Intramuscular injection - Abstract
There are no FDA-approved drugs that can be administered prior to ionizing radiation exposure to prevent hematopoietic–acute radiation syndrome (H-ARS). A suspension of synthetic genistein nanoparticles was previously shown to be an effective radioprotectant against H-ARS when administered prior to exposure to a lethal dose of total body radiation. Here we aimed to determine the time to protection and the duration of protection when the genistein nanosuspension was administered by intramuscular injection, and we also investigated the drug’s mechanism of action. A single intramuscular injection of the genistein nanosuspension was an effective radioprotectant when given prophylactically 48 h to 12 h before irradiation, with maximum effectiveness occurring when administered 24 h before. No survival advantage was observed in animals administered only a single dose of drug after irradiation. The dose reduction factor of the genistein nanosuspension was determined by comparing the survival of treated and untreated animals following different doses of total body irradiation. As genistein is a selective estrogen receptor beta agonist, we also explored whether this was a central component of its radioprotective mechanism of action. Mice that received an intramuscular injection of an estrogen receptor antagonist (ICI 182,780) prior to administration of the genistein nanosuspension had significantly lower survival following total body irradiation compared with animals only receiving the nanosuspension (P < 0.01). These data define the time to and duration of radioprotection following a single intramuscular injection of the genistein nanosuspension and identify its likely mechanism of action.
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- 2019
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9. 1042. Safety of Investigational Microbiota-Based Live Biotherapeutic RBX2660 in Individuals with Recurrent Clostridioides difficile Infection: Data from Five Prospective Clinical Studies
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Tricia Braun, Beth Guthmueller, and Adam J Harvey
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Infectious Diseases ,AcademicSubjects/MED00290 ,Oncology ,Poster Abstracts - Abstract
Background Microbiota-based treatments have shown promise to reduce recurrence, morbidity, and mortality for recurrent Clostridioides difficile infections (rCDI), but consistent and reliable safety data are needed to support regulatory approvals and broaden patient access. Here we provide cumulative safety data from 5 prospective clinical studies evaluating RBX2660—a standardized, microbiota-based investigational live biotherapeutic—for reducing rCDI. Methods This analysis included three Phase 2 (PUNCH CD, PUNCH CD2, PUNCH CD Open Label) and two Phase 3 trials (PUNCH CD3, PUNCH CD3-OLS ad hoc analysis). Participants were ≥18 years old with documented rCDI who completed standard-of-care oral antibiotic therapy prior to treatment with RBX2660. PUNCH CD3-OLS allowed participants with comorbidities of irritable bowel syndrome (IBS) or inflammatory bowel disease (IBD). Depending on the trial, assigned study treatment was 1 or 2 doses of RBX2660 (or placebo), administered rectally. Participants whose CDI recurred within 8 weeks were eligible for additional RBX2660 treatment. Treatment-emergent adverse events (TEAEs) were recorded for at least 6 months following last study treatment; CD2 and CD Open Label recorded TEAEs for 24 months. Results Among 620 participants who received at least one RBX2660 dose (assigned treatment or after recurrence), 324 (52.3%) received 1, 270 (43.5%) received 2, 14 (2.3%) received 3, and 12 (1.9%) received 4. 83 participants received blinded placebo only. A total of 1980 TEAEs were reported from 432 (69.7%) RBX2660-treated participants, compared to 174 TEAEs in 50 (60.2%) placebo-only treated participants. Most TEAEs were mild or moderate in severity, with diarrhea common in all treatment groups. No potentially life-threatening TEAEs were considered related to RBX2660. Study discontinuation due to TEAEs was minimal (< 1%) with none related to RBX2660. There were no reported infections for which the causative pathogen was traced to RBX2660. Conclusion Across five clinical studies with consistent investigational product, RBX2660 was well-tolerated in rCDI participants. In aggregate, this data provides compelling and consistent safety data for RBX2660. Disclosures Tricia Braun, PharmD, Rebiotix, a Ferring Company (Employee) Beth Guthmueller, AS, Rebiotix Inc, A Ferring Company (Employee) Adam J. Harvey, PhD, Rebiotix, A Ferring Company (Employee)
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- 2021
10. Bi-allelic MCM10 mutations cause telomere shortening with immune dysfunction and cardiomyopathy
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Elizabeth Ormondroyd, Hideki Aihara, Emily M. Mace, Anja Katrin Bielinsky, James Taylor, Judith Craft, Alistair T. Pagnamenta, Ryan M. Baxley, Ed Blair, Helene Dreau, Jacob Peter Matson, Wendy Leung, Debashree Basu, Jenny C. Taylor, Grant S. Stewart, Megan Schmit, Jack Hedberg, Hugh Watkins, Adam J. Harvey, Lynn Wang, Colette B. Rogers, Eric A. Hendrickson, Lulu Yin, Cook Jg, Marissa K. Oram, and Jordan S. Orange
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Genome instability ,Telomerase ,medicine.anatomical_structure ,Minichromosome maintenance ,Cell ,MCM10 ,medicine ,Eukaryotic DNA replication ,Viability assay ,Biology ,Cell biology ,Telomere - Abstract
Minichromosome maintenance protein 10 (Mcm10) is essential for eukaryotic DNA replication. Here, we describe compound heterozygous MCM10 mutations in patients with distinctive but overlapping clinical phenotypes – natural killer (NK) cell deficiency (NKD) and restrictive cardiomyopathy (RCM) with hypoplasia of the spleen and thymus. To understand the mechanism of Mcm10-associated disease, we modeled these mutations in human cell lines. Mcm10 deficiency causes chronic replication stress that reduces cell viability due to increased genomic instability and telomere erosion. Our data suggest that loss of Mcm10 function constrains telomerase activity by accumulating abnormal replication fork structures enriched with single-stranded DNA. Terminally-arrested replication forks in Mcm10-deficient cells require endonucleolytic processing by Mus81, as MCM10:MUS81 double mutants display decreased viability and accelerated telomere shortening. We propose that these bi-allelic mutations in MCM10 predispose specific cardiac and immune cell lineages to prematurely arrest during differentiation, causing the clinical phenotypes in both NKD and CM patients.
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- 2019
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11. That’s Not What I Meant
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Jonathon K. Frost, Brock Bybee, Adam J. Harvey, Renee Edwards, and Michael Navarro
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Cognitive science ,Linguistics and Language ,Communication ,Sociology and Political Science ,Social Psychology ,business.industry ,Interpretation (philosophy) ,05 social sciences ,050801 communication & media studies ,050109 social psychology ,Language and Linguistics ,Education ,0508 media and communications ,Anthropology ,Perspective-taking ,0501 psychology and cognitive sciences ,Computer-mediated communication ,Element (criminal law) ,business ,Psychology ,Communication channel - Abstract
Misunderstanding is an integral and unavoidable element of communication. This article links misunderstanding theoretically to message interpretation and conflict, then presents the results of a study that examined relationships among misunderstanding, channel of communication, and three forms of perspective-taking. Participants ( n = 98) responded to scaled items and described experiences of misunderstanding. Results showed that face-to-face misunderstandings are more serious than those that occur in computer-mediated communication. Dispositional perspective-taking, situational perspective-taking, and partner’s situational perspective-taking were correlated with features such as frequency of misunderstanding, use of integrative strategies, open communication, humor, personal offense, and communication satisfaction. In about two thirds of the reported misunderstandings, the problem occurred because of the tone of the message, an interlocutor took personal offense, and open communication was used to resolve it. The findings are consistent with predictions concerning perspective-taking and extend understanding of misunderstanding. Recommendations include examining misunderstanding, especially in CMC, in greater depth.
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- 2016
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12. PARP1 is required for preserving telomeric integrity but is dispensable for A-NHEJ
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Nicholas Mielke, Thanh Nguyen, Eric A. Hendrickson, Adam J. Harvey, Julia W. Grimstead, Rhiannon E. Jones, Duncan M. Baird, and Matthew Mueller
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0301 basic medicine ,Genome instability ,DNA damage ,HDR ,Synthetic lethality ,Biology ,PARP1 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Genome editing ,Polymerase ,NHEJ ,gene editing ,telomeres ,3. Good health ,Telomere ,Cell biology ,030104 developmental biology ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,biology.protein ,DNA ,Research Paper - Abstract
Poly-ADP ribose polymerase 1 (PARP1) is clinically important because of its synthetic lethality with breast cancer allele 1 and 2 mutations, which are causative for inherited breast and ovarian cancers. Biochemically, PARP1 is a single-stranded DNA break repair protein that is needed for preserving genomic integrity. In addition, PARP1 has been implicated in a veritable plethora of additional cellular pathways and thus its precise contribution(s) to human biology has remained obscure. To help address this deficiency, we utilized gene editing to construct genetically-null PARP1 human cancer cells. We found a minor role for PARP1 in an alternative form of DNA double-strand break (DSB) repair, but only when these cells were deficient for the classical form of DSB repair. Despite being proficient for DSB repair, however, cell cycle progression defects and elevated endogenous DNA damage signaling were observed. These deficiencies were instead linked to telomere defects, where PARP1-/- cells had short telomeres that co-localized with markers of endogenous DNA damage and were compromised in their ability to escape a telomere-driven crisis. Our data suggest that while PARP1 does not participate significantly in DNA DSB repair itself, it does prevent the incidence of telomeric DSBs, which, in turn, can drive genomic instability.
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- 2018
13. ATRX represses alternative lengthening of telomeres
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Jane R. Noble, Adam J. Harvey, Lily I. Huschtscha, Eric A. Hendrickson, Kylie Bower, Christine E. Napier, and Roger R. Reddel
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Male ,Telomerase ,X-linked Nuclear Protein ,ALT ,Simian virus 40 ,Biology ,immortalization ,digestive system ,Chromatin remodeling ,03 medical and health sciences ,0302 clinical medicine ,Telomere Homeostasis ,Death-associated protein 6 ,Neoplasms ,Humans ,Epigenetics ,RNA, Small Interfering ,ATRX ,030304 developmental biology ,Adaptor Proteins, Signal Transducing ,Cell Line, Transformed ,Genetics ,0303 health sciences ,telomere ,DNA Helicases ,Nuclear Proteins ,digestive system diseases ,Telomere ,Oncology ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,RNA Interference ,Co-Repressor Proteins ,Research Paper ,Molecular Chaperones - Abstract
The unlimited proliferation of cancer cells requires a mechanism to prevent telomere shortening. Alternative Lengthening of Telomeres (ALT) is an homologous recombination-mediated mechanism of telomere elongation used in tumors, including osteosarcomas, soft tissue sarcoma subtypes, and glial brain tumors. Mutations in the ATRX/DAXX chromatin remodeling complex have been reported in tumors and cell lines that use the ALT mechanism, suggesting that ATRX may be an ALT repressor. We show here that knockout or knockdown of ATRX in mortal cells or immortal telomerase-positive cells is insufficient to activate ALT. Notably, however, in SV40-transformed mortal fibroblasts ATRX loss results in either a significant increase in the proportion of cell lines activating ALT (instead of telomerase) or in a significant decrease in the time prior to ALT activation. These data indicate that loss of ATRX function cooperates with one or more as-yet unidentified genetic or epigenetic alterations to activate ALT. Moreover, transient ATRX expression in ALT-positive/ATRX-negative cells represses ALT activity. These data provide the first direct, functional evidence that ATRX represses ALT.
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- 2015
14. DNA ligase III and DNA ligase IV carry out genetically distinct forms of end joining in human somatic cells
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Adam J. Harvey, Sehyun Oh, Eric A. Hendrickson, Pauline Jackson, Yongbao Wang, Thanh Nguyen, and Jacob Zimbric
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DNA End-Joining Repair ,Ku80 ,DNA Ligases ,DNA repair ,Xenopus Proteins ,LIG4 ,Biology ,Biochemistry ,Article ,Cell Line ,DNA Ligase ATP ,Humans ,Poly-ADP-Ribose Binding Proteins ,Ku Autoantigen ,Molecular Biology ,chemistry.chemical_classification ,DNA ligase ,fungi ,Gene targeting ,Antigens, Nuclear ,Cell Biology ,HCT116 Cells ,Molecular biology ,DNA-Binding Proteins ,Non-homologous end joining ,enzymes and coenzymes (carbohydrates) ,chemistry ,embryonic structures ,Homologous recombination - Abstract
Ku-dependent C-NHEJ (classic non-homologous end joining) is the primary DNA EJing (end joining) repair pathway in mammals. Recently, an additional EJing repair pathway (A-NHEJ; alternative-NHEJ) has been described. Currently, the mechanism of A-NHEJ is obscure although a dependency on LIGIII (DNA ligase III) is often implicated. To test the requirement for LIGIII in A-NHEJ we constructed a LIGIII conditionally-null human cell line using gene targeting. Nuclear EJing activity appeared unaffected by a deficiency in LIGIII as, surprisingly, so were random gene targeting integration events. In contrast, LIGIII was required for mitochondrial function and this defined the gene’s essential activity. Human Ku:LIGIII and Ku:LIGIV (DNA ligase IV) double knockout cell lines, however, demonstrated that LIGIII is required for the enhanced A-NHEJ activity that is observed in Ku-deficient cells. Most unexpectedly, however, the majority of EJing events remained LIGIV-dependent. In conclusion, although human LIGIII has an essential function in mitochondrial maintenance, it is dispensable for most types of nuclear DSB repair, except for the A-NHEJ events that are normally suppressed by Ku. Moreover, we describe that a robust Ku-independent, LIGIV-dependent repair pathway exists in human somatic cells.
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- 2014
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