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This paper presents EarthView, a comprehensive dataset specifically designed for self-supervision on remote sensing data, intended to enhance deep learning applications on Earth monitoring tasks. The dataset spans 15 tera pixels of global remote-sensing data, combining imagery from a diverse range of sources, including NEON, Sentinel, and a novel release of 1m spatial resolution data from Satellogic. Our dataset provides a wide spectrum of image data with varying resolutions, harnessed from different sensors and organized coherently into an accessible HuggingFace dataset in parquet format. This data spans five years, from 2017 to 2022. Accompanying the dataset, we introduce EarthMAE, a tailored Masked Autoencoder, developed to tackle the distinct challenges of remote sensing data. Trained in a self-supervised fashion, EarthMAE effectively processes different data modalities such as hyperspectral, multispectral, topographical data, segmentation maps, and temporal structure. This model helps us show that pre-training on Satellogic data improves performance on downstream tasks. While there is still a gap to fill in MAE for heterogeneous data, we regard this innovative combination of an expansive, diverse dataset and a versatile model adapted for self-supervised learning as a stride forward in deep learning for Earth monitoring., Comment: 2nd Workshop on Computer Vision for Earth Observation (CV4EO) Applications

Growth in bacterial populations generally depends on the environment (availability and quality of nutrients, presence of a toxic inhibitor, product inhibition..). Here, we build a general model to describe the action of a bacteriostatic antibiotic, assuming that this drug inhibits essential autocatalytic cycles involved in the cell metabolism. The model can describe various types of antibiotics and confirms the existence of two distinct regimes of growth-dependent susceptibility, previously identified only for ribosome targeting antibiotics. Interestingly, below a certain threshold, a coexistence of two values of the growth rate is possible, which has also been observed experimentally., Comment: 6 pages, 3 figures for the main. 16 pages, 7 figures for the supplemental

We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which leverages a bitwise representation of variables to perform independent simulations in parallel. We show that the subsequent gain in computational yield is significant, and it may allow to perform simulations of non-well mixed chemical systems. We illustrate this idea with simulations of Frank model, originally introduced to explain the emergence of homochirality in prebiotic systems.

The BrowserGym ecosystem addresses the growing need for efficient evaluation and benchmarking of web agents, particularly those leveraging automation and Large Language Models (LLMs) for web interaction tasks. Many existing benchmarks suffer from fragmentation and inconsistent evaluation methodologies, making it challenging to achieve reliable comparisons and reproducible results. BrowserGym aims to solve this by providing a unified, gym-like environment with well-defined observation and action spaces, facilitating standardized evaluation across diverse benchmarks. Combined with AgentLab, a complementary framework that aids in agent creation, testing, and analysis, BrowserGym offers flexibility for integrating new benchmarks while ensuring consistent evaluation and comprehensive experiment management. This standardized approach seeks to reduce the time and complexity of developing web agents, supporting more reliable comparisons and facilitating in-depth analysis of agent behaviors, and could result in more adaptable, capable agents, ultimately accelerating innovation in LLM-driven automation. As a supporting evidence, we conduct the first large-scale, multi-benchmark web agent experiment and compare the performance of 6 state-of-the-art LLMs across all benchmarks currently available in BrowserGym. Among other findings, our results highlight a large discrepancy between OpenAI and Anthropic's latests models, with Claude-3.5-Sonnet leading the way on almost all benchmarks, except on vision-related tasks where GPT-4o is superior. Despite these advancements, our results emphasize that building robust and efficient web agents remains a significant challenge, due to the inherent complexity of real-world web environments and the limitations of current models.

Performative prediction is a framework accounting for the shift in the data distribution induced by the prediction of a model deployed in the real world. Ensuring rapid convergence to a stable solution where the data distribution remains the same after the model deployment is crucial, especially in evolving environments. This paper extends the Repeated Risk Minimization (RRM) framework by utilizing historical datasets from previous retraining snapshots, yielding a class of algorithms that we call Affine Risk Minimizers and enabling convergence to a performatively stable point for a broader class of problems. We introduce a new upper bound for methods that use only the final iteration of the dataset and prove for the first time the tightness of both this new bound and the previous existing bounds within the same regime. We also prove that utilizing historical datasets can surpass the lower bound for last iterate RRM, and empirically observe faster convergence to the stable point on various performative prediction benchmarks. We offer at the same time the first lower bound analysis for RRM within the class of Affine Risk Minimizers, quantifying the potential improvements in convergence speed that could be achieved with other variants in our framework.

While numerous recent benchmarks focus on evaluating generic Vision-Language Models (VLMs), they fall short in addressing the unique demands of geospatial applications. Generic VLM benchmarks are not designed to handle the complexities of geospatial data, which is critical for applications such as environmental monitoring, urban planning, and disaster management. Some of the unique challenges in geospatial domain include temporal analysis for changes, counting objects in large quantities, detecting tiny objects, and understanding relationships between entities occurring in Remote Sensing imagery. To address this gap in the geospatial domain, we present GEOBench-VLM, a comprehensive benchmark specifically designed to evaluate VLMs on geospatial tasks, including scene understanding, object counting, localization, fine-grained categorization, and temporal analysis. Our benchmark features over 10,000 manually verified instructions and covers a diverse set of variations in visual conditions, object type, and scale. We evaluate several state-of-the-art VLMs to assess their accuracy within the geospatial context. The results indicate that although existing VLMs demonstrate potential, they face challenges when dealing with geospatial-specific examples, highlighting the room for further improvements. Specifically, the best-performing GPT4o achieves only 40\% accuracy on MCQs, which is only double the random guess performance. Our benchmark is publicly available at https://github.com/The-AI-Alliance/GEO-Bench-VLM .

Despite its widespread adoption, Adam's advantage over Stochastic Gradient Descent (SGD) lacks a comprehensive theoretical explanation. This paper investigates Adam's sensitivity to rotations of the parameter space. We demonstrate that Adam's performance in training transformers degrades under random rotations of the parameter space, indicating a crucial sensitivity to the choice of basis. This reveals that conventional rotation-invariant assumptions are insufficient to capture Adam's advantages theoretically. To better understand the rotation-dependent properties that benefit Adam, we also identify structured rotations that preserve or even enhance its empirical performance. We then examine the rotation-dependent assumptions in the literature, evaluating their adequacy in explaining Adam's behavior across various rotation types. This work highlights the need for new, rotation-dependent theoretical frameworks to fully understand Adam's empirical success in modern machine learning tasks.

Forecasting is a critical task in decision making across various domains. While numerical data provides a foundation, it often lacks crucial context necessary for accurate predictions. Human forecasters frequently rely on additional information, such as background knowledge or constraints, which can be efficiently communicated through natural language. However, the ability of existing forecasting models to effectively integrate this textual information remains an open question. To address this, we introduce "Context is Key" (CiK), a time series forecasting benchmark that pairs numerical data with diverse types of carefully crafted textual context, requiring models to integrate both modalities. We evaluate a range of approaches, including statistical models, time series foundation models, and LLM-based forecasters, and propose a simple yet effective LLM prompting method that outperforms all other tested methods on our benchmark. Our experiments highlight the importance of incorporating contextual information, demonstrate surprising performance when using LLM-based forecasting models, and also reveal some of their critical shortcomings. By presenting this benchmark, we aim to advance multimodal forecasting, promoting models that are both accurate and accessible to decision-makers with varied technical expertise. The benchmark can be visualized at https://servicenow.github.io/context-is-key-forecasting/v0/ ., Comment: Preprint; under review. First two authors contributed equally

Neural network training can be accelerated when a learnable update rule is used in lieu of classic adaptive optimizers (e.g. Adam). However, learnable update rules can be costly and unstable to train and use. Recently, Jang et al. (2023) proposed a simpler approach to accelerate training based on weight nowcaster networks (WNNs). In their approach, Adam is used for most of the optimization steps and periodically, only every few steps, a WNN nowcasts (predicts near future) parameters. We improve WNNs by proposing neuron interaction and nowcasting (NiNo) networks. In contrast to WNNs, NiNo leverages neuron connectivity and graph neural networks to more accurately nowcast parameters. We further show that in some networks, such as Transformers, modeling neuron connectivity accurately is challenging. We address this and other limitations, which allows NiNo to accelerate Adam training by up to 50% in vision and language tasks., Comment: added Llama3-based results and other updates, code is https://github.com/SamsungSAILMontreal/nino

Agents often have individual goals which depend on a group's actions. If agents trust a forecast of collective action and adapt strategically, such prediction can influence outcomes non-trivially, resulting in a form of performative prediction. This effect is ubiquitous in scenarios ranging from pandemic predictions to election polls, but existing work has ignored interdependencies among predicted agents. As a first step in this direction, we study a collective risk dilemma where agents dynamically decide whether to trust predictions based on past accuracy. As predictions shape collective outcomes, social welfare arises naturally as a metric of concern. We explore the resulting interplay between accuracy and welfare, and demonstrate that searching for stable accurate predictions can minimize social welfare with high probability in our setting. By assuming knowledge of a Bayesian agent behavior model, we then show how to achieve better trade-offs and use them for mechanism design.

We are interested in the problem of classifying Multivariate Hawkes Processes (MHP) paths coming from several classes. MHP form a versatile family of point processes that models interactions between connected individuals within a network. In this paper, the classes are discriminated by the exogenous intensity vector and the adjacency matrix, which encodes the strength of the interactions. The observed learning data consist of labeled repeated and independent paths on a fixed time interval. Besides, we consider the high-dimensional setting, meaning the dimension of the network may be large {\it w.r.t.} the number of observations. We consequently require a sparsity assumption on the adjacency matrix. In this context, we propose a novel methodology with an initial interaction recovery step, by class, followed by a refitting step based on a suitable classification criterion. To recover the support of the adjacency matrix, a Lasso-type estimator is proposed, for which we establish rates of convergence. Then, leveraging the estimated support, we build a classification procedure based on the minimization of a $L_2$-risk. Notably, rates of convergence of our classification procedure are provided. An in-depth testing phase using synthetic data supports both theoretical results.

Data analytics is essential for extracting valuable insights from data that can assist organizations in making effective decisions. We introduce InsightBench, a benchmark dataset with three key features. First, it consists of 100 datasets representing diverse business use cases such as finance and incident management, each accompanied by a carefully curated set of insights planted in the datasets. Second, unlike existing benchmarks focusing on answering single queries, InsightBench evaluates agents based on their ability to perform end-to-end data analytics, including formulating questions, interpreting answers, and generating a summary of insights and actionable steps. Third, we conducted comprehensive quality assurance to ensure that each dataset in the benchmark had clear goals and included relevant and meaningful questions and analysis. Furthermore, we implement a two-way evaluation mechanism using LLaMA-3 as an effective, open-source evaluator to assess agents' ability to extract insights. We also propose AgentPoirot, our baseline data analysis agent capable of performing end-to-end data analytics. Our evaluation on InsightBench shows that AgentPoirot outperforms existing approaches (such as Pandas Agent) that focus on resolving single queries. We also compare the performance of open- and closed-source LLMs and various evaluation strategies. Overall, this benchmark serves as a testbed to motivate further development in comprehensive automated data analytics.

The ability of large language models (LLMs) to mimic human-like intelligence has led to a surge in LLM-based autonomous agents. Though recent LLMs seem capable of planning and reasoning given user instructions, their effectiveness in applying these capabilities for autonomous task solving remains underexplored. This is especially true in enterprise settings, where automated agents hold the promise of a high impact. To fill this gap, we propose WorkArena++, a novel benchmark consisting of 682 tasks corresponding to realistic workflows routinely performed by knowledge workers. WorkArena++ is designed to evaluate the planning, problem-solving, logical/arithmetic reasoning, retrieval, and contextual understanding abilities of web agents. Our empirical studies across state-of-the-art LLMs and vision-language models (VLMs), as well as human workers, reveal several challenges for such models to serve as useful assistants in the workplace. In addition to the benchmark, we provide a mechanism to effortlessly generate thousands of ground-truth observation/action traces, which can be used for fine-tuning existing models. Overall, we expect this work to serve as a useful resource to help the community progress toward capable autonomous agents. The benchmark can be found at https://github.com/ServiceNow/WorkArena/tree/workarena-plus-plus.

Constrained optimization offers a powerful framework to prescribe desired behaviors in neural network models. Typically, constrained problems are solved via their min-max Lagrangian formulations, which exhibit unstable oscillatory dynamics when optimized using gradient descent-ascent. The adoption of constrained optimization techniques in the machine learning community is currently limited by the lack of reliable, general-purpose update schemes for the Lagrange multipliers. This paper proposes the $\nu$PI algorithm and contributes an optimization perspective on Lagrange multiplier updates based on PI controllers, extending the work of Stooke, Achiam and Abbeel (2020). We provide theoretical and empirical insights explaining the inability of momentum methods to address the shortcomings of gradient descent-ascent, and contrast this with the empirical success of our proposed $\nu$PI controller. Moreover, we prove that $\nu$PI generalizes popular momentum methods for single-objective minimization. Our experiments demonstrate that $\nu$PI reliably stabilizes the multiplier dynamics and its hyperparameters enjoy robust and predictable behavior., Comment: Published at ICML 2024. Code available at https://github.com/motahareh-sohrabi/nuPI

This work introduces ChemPlasKin, a freely accessible solver optimized for zero-dimensional (0D) simulations of chemical kinetics of neutral gas in non-equilibrium plasma environments. By integrating the electron Boltzmann equation solver, CppBOLOS, with the open-source combustion library, Cantera, at the source code level, ChemPlasKin computes time-resolved evolution of species concentration and gas temperature in a unified gas-plasma kinetics framework. The model allows high fidelity predictions of both chemical thermal effects and plasma-induced heating, including fast gas heating and slower vibrational-translational relaxation processes. Additionally, a new heat loss model is developed for nanosecond pulsed discharges, specifically within pin-pin electrode configurations. With its versatility, ChemPlasKin is well-suited for a wide range of applications, from plasma-assisted combustion (PAC) to fuel reforming. In this paper, the reliability, accuracy and efficiency of ChemPlasKin are validated through a number of test problems, demonstrating its utility in advancing gas-plasma kinetic studies., Comment: 20 pages, 11 figures

This work introduces a novel principle for disentanglement we call mechanism sparsity regularization, which applies when the latent factors of interest depend sparsely on observed auxiliary variables and/or past latent factors. We propose a representation learning method that induces disentanglement by simultaneously learning the latent factors and the sparse causal graphical model that explains them. We develop a nonparametric identifiability theory that formalizes this principle and shows that the latent factors can be recovered by regularizing the learned causal graph to be sparse. More precisely, we show identifiablity up to a novel equivalence relation we call "consistency", which allows some latent factors to remain entangled (hence the term partial disentanglement). To describe the structure of this entanglement, we introduce the notions of entanglement graphs and graph preserving functions. We further provide a graphical criterion which guarantees complete disentanglement, that is identifiability up to permutations and element-wise transformations. We demonstrate the scope of the mechanism sparsity principle as well as the assumptions it relies on with several worked out examples. For instance, the framework shows how one can leverage multi-node interventions with unknown targets on the latent factors to disentangle them. We further draw connections between our nonparametric results and the now popular exponential family assumption. Lastly, we propose an estimation procedure based on variational autoencoders and a sparsity constraint and demonstrate it on various synthetic datasets. This work is meant to be a significantly extended version of Lachapelle et al. (2022)., Comment: 88 pages

We study the use of large language model-based agents for interacting with software via web browsers. Unlike prior work, we focus on measuring the agents' ability to perform tasks that span the typical daily work of knowledge workers utilizing enterprise software systems. To this end, we propose WorkArena, a remote-hosted benchmark of 33 tasks based on the widely-used ServiceNow platform. We also introduce BrowserGym, an environment for the design and evaluation of such agents, offering a rich set of actions as well as multimodal observations. Our empirical evaluation reveals that while current agents show promise on WorkArena, there remains a considerable gap towards achieving full task automation. Notably, our analysis uncovers a significant performance disparity between open and closed-source LLMs, highlighting a critical area for future exploration and development in the field., Comment: 21 pages, 11 figures, preprint

Together with the molecular knowledge of genes and proteins, biological images promise to significantly enhance the scientific understanding of complex cellular systems and to advance predictive and personalized therapeutic products for human health. For this potential to be realized, quality-assured image data must be shared among labs at a global scale to be compared, pooled, and reanalyzed, thus unleashing untold potential beyond the original purpose for which the data was generated. There are two broad sets of requirements to enable image data sharing in the life sciences. One set of requirements is articulated in the companion White Paper entitled Enabling Global Image Data Sharing in the Life Sciences, which is published in parallel and addresses the need to build the cyberinfrastructure for sharing the digital array data. In this White Paper, we detail a broad set of requirements, which involves collecting, managing, presenting, and propagating contextual information essential to assess the quality, understand the content, interpret the scientific implications, and reuse image data in the context of the experimental details. We start by providing an overview of the main lessons learned to date through international community activities, which have recently made considerable progress toward generating community standard practices for imaging Quality Control (QC) and metadata. We then provide a clear set of recommendations for amplifying this work. The driving goal is to address remaining challenges and democratize access to everyday practices and tools for a spectrum of biomedical researchers, regardless of their expertise, access to resources, and geographical location., Comment: This manuscript is published with a closely related companion entitled, Enabling Global Image Data Sharing in the Life Sciences, which can be found at the following link, arXiv:2401.13023 [q-bio.OT]

The extraction of a small number of relevant insights from vast amounts of data is a crucial component of data-driven decision-making. However, accomplishing this task requires considerable technical skills, domain expertise, and human labor. This study explores the potential of using Large Language Models (LLMs) to automate the discovery of insights in data, leveraging recent advances in reasoning and code generation techniques. We propose a new evaluation methodology based on a "capture the flag" principle, measuring the ability of such models to recognize meaningful and pertinent information (flags) in a dataset. We further propose two proof-of-concept agents, with different inner workings, and compare their ability to capture such flags in a real-world sales dataset. While the work reported here is preliminary, our results are sufficiently interesting to mandate future exploration by the community., Comment: 14 pages, 1 figure, Foundation Models for Decision Making Workshop at NeurIPS 2023

RNA in extant biological systems is homochiral; it consists exclusively of D-ribonucleotides rather than L-ribonucleotides. How the homochirality of RNA emerged is not known. Here, we use stochastic simulations to quantitatively explore the conditions for RNA homochirality to emerge in the prebiotic scenario of an RNA reactor, in which RNA strands react in a non-equilibrium environment. These reactions include the hybridization, dehybridization, template-directed ligation, and cleavage of RNA strands. The RNA reactor is either closed, with a finite pool of ribonucleotide monomers of both chiralities (D and L), or the reactor is open, with a constant inflow of a racemic mixture of monomers. For the closed reactor, we also consider the interconversion between D and L monomers via a racemization reaction. We first show that template-free polymerization is unable to reach a high degree of homochirality, due to the lack of autocatalytic amplification. In contrast, in the presence of template-directed ligation, with base pairing and stacking between bases of the same chirality thermodynamically favored, a high degree of homochirality can arise and be maintained, provided the non equilibrium environment overcomes product inhibition, for instance via temperature cycling. Furthermore, if the experimentally observed kinetic stalling of ligation after chiral mismatches is also incorporated, the RNA reactor can evolve towards a fully homochiral state, in which one chirality is entirely lost. This is possible because the kinetic stalling after chiral mismatches effectively implements a chiral cross-inhibition process. Taken together, our model supports a scenario where the emergence of homochirality is assisted by template-directed ligation and polymerization in a non equilibrium RNA reactor.

Weight-sharing is ubiquitous in deep learning. Motivated by this, we propose a "weight-sharing regularization" penalty on the weights $w \in \mathbb{R}^d$ of a neural network, defined as $\mathcal{R}(w) = \frac{1}{d - 1}\sum_{i > j}^d |w_i - w_j|$. We study the proximal mapping of $\mathcal{R}$ and provide an intuitive interpretation of it in terms of a physical system of interacting particles. We also parallelize existing algorithms for $\operatorname{prox}_\mathcal{R}$ (to run on GPU) and find that one of them is fast in practice but slow ($O(d)$) for worst-case inputs. Using the physical interpretation, we design a novel parallel algorithm which runs in $O(\log^3 d)$ when sufficient processors are available, thus guaranteeing fast training. Our experiments reveal that weight-sharing regularization enables fully connected networks to learn convolution-like filters even when pixels have been shuffled while convolutional neural networks fail in this setting. Our code is available on github., Comment: Our code is available at https://github.com/motahareh-sohrabi/weight-sharing-regularization

1.8 micrometer-thick magnesium hydride films were synthesized in a single-step process by reactive plasma-assisted sputtering. The MgH2 thin films, which were deposited on two types of flexible surfaces (namely graphite and polyimide foils) were found to adhere on both substrates. In all cases, XRD analysis revealed an as-deposited thin film consisting of alpha-MgH2, a tetragonal, rutile-type crystal structure (space group \#136). The hydrogen sorption capacities of the uncapped films were studied over successive desorption/absorption cycles performed at 350 {\textdegree}C. The first desorption always shows a slow kinetics that can be explained by a superficial oxidation of the films. However, once the passivating layer is removed, the following dehydrogenations occur faster. Multiple cycling of the film deposited on polyimide resulted in delamination of the film and its conversion into loose powder. As for MgH2 deposited on the flexible graphite substrate, a fully reversible capacity was observed over 28 cycles with no delamination of the film. Upon cycling, the microstructure of the film has evolved from homogeneous fibrous to an untextured morphology with a higher degree of crystallinity.

Model pruning is a popular approach to enable the deployment of large deep learning models on edge devices with restricted computational or storage capacities. Although sparse models achieve performance comparable to that of their dense counterparts at the level of the entire dataset, they exhibit high accuracy drops for some data sub-groups. Existing methods to mitigate this disparate impact induced by pruning (i) rely on surrogate metrics that address the problem indirectly and have limited interpretability; or (ii) scale poorly with the number of protected sub-groups in terms of computational cost. We propose a constrained optimization approach that directly addresses the disparate impact of pruning: our formulation bounds the accuracy change between the dense and sparse models, for each sub-group. This choice of constraints provides an interpretable success criterion to determine if a pruned model achieves acceptable disparity levels. Experimental results demonstrate that our technique scales reliably to problems involving large models and hundreds of protected sub-groups., Comment: Published at ICLR 2024. Code available at https://github.com/merajhashemi/balancing-act

The quality of the proton beam produced by Target Normal Sheath Acceleration (TNSA) with high power lasers can be significantly improved with the use of helical coils. While they showed promising results in terms of focusing, their performances in terms of the of cutoff energy and bunching stay limited due to the dispersive nature of helical coils. A new scheme of helical coil with a tube surrounding the helix is introduced, and the first numerical simulations and an analytical model show a possibility of a drastic reduction of the current pulse dispersion for the parameters of high power laser facilities. The helical coils with tube strongly increase bunching, creating two collimated narrow-band proton beams from a broad and divergent TNSA distribution. The analytical model provides scaling of proton parameters as a function of laser facility features.

Adaptive gradient-based optimizers, notably Adam, have left their mark in training large-scale deep learning models, offering fast convergence and robustness to hyperparameter settings. However, they often struggle with generalization, attributed to their tendency to converge to sharp minima in the loss landscape. To address this, we propose a new memory-augmented version of Adam that encourages exploration towards flatter minima by incorporating a buffer of critical momentum terms during training. This buffer prompts the optimizer to overshoot beyond narrow minima, promoting exploration. Through comprehensive analysis in simple settings, we illustrate the efficacy of our approach in increasing exploration and bias towards flatter minima. We empirically demonstrate that it can improve model performance for image classification on ImageNet and CIFAR10/100, language modelling on Penn Treebank, and online learning tasks on TinyImageNet and 5-dataset. Our code is available at \url{https://github.com/chandar-lab/CMOptimizer}., Comment: Published in Transactions on Machine Learning Research

We tackle the problems of latent variables identification and ``out-of-support'' image generation in representation learning. We show that both are possible for a class of decoders that we call additive, which are reminiscent of decoders used for object-centric representation learning (OCRL) and well suited for images that can be decomposed as a sum of object-specific images. We provide conditions under which exactly solving the reconstruction problem using an additive decoder is guaranteed to identify the blocks of latent variables up to permutation and block-wise invertible transformations. This guarantee relies only on very weak assumptions about the distribution of the latent factors, which might present statistical dependencies and have an almost arbitrarily shaped support. Our result provides a new setting where nonlinear independent component analysis (ICA) is possible and adds to our theoretical understanding of OCRL methods. We also show theoretically that additive decoders can generate novel images by recombining observed factors of variations in novel ways, an ability we refer to as Cartesian-product extrapolation. We show empirically that additivity is crucial for both identifiability and extrapolation on simulated data., Comment: Appears in: Advances in Neural Information Processing Systems 37 (NeurIPS 2023). 39 pages

Disentanglement aims to recover meaningful latent ground-truth factors from the observed distribution solely, and is formalized through the theory of identifiability. The identifiability of independent latent factors is proven to be impossible in the unsupervised i.i.d. setting under a general nonlinear map from factors to observations. In this work, however, we demonstrate that it is possible to recover quantized latent factors under a generic nonlinear diffeomorphism. We only assume that the latent factors have independent discontinuities in their density, without requiring the factors to be statistically independent. We introduce this novel form of identifiability, termed quantized factor identifiability, and provide a comprehensive proof of the recovery of the quantized factors., Comment: Appears in: 3rd Conference on Causal Learning and Reasoning (CLeaR 2024). 39 pages

Recent progress in self-supervision has shown that pre-training large neural networks on vast amounts of unsupervised data can lead to substantial increases in generalization to downstream tasks. Such models, recently coined foundation models, have been transformational to the field of natural language processing. Variants have also been proposed for image data, but their applicability to remote sensing tasks is limited. To stimulate the development of foundation models for Earth monitoring, we propose a benchmark comprised of six classification and six segmentation tasks, which were carefully curated and adapted to be both relevant to the field and well-suited for model evaluation. We accompany this benchmark with a robust methodology for evaluating models and reporting aggregated results to enable a reliable assessment of progress. Finally, we report results for 20 baselines to gain information about the performance of existing models. We believe that this benchmark will be a driver of progress across a variety of Earth monitoring tasks., Comment: arXiv admin note: text overlap with arXiv:2112.00570

Autocatalytic chemical networks play a predominant role in a large number of natural systems such as in metabolic pathways and in ecological networks. Despite recent efforts, the precise impact of thermodynamic constraints on these networks remains elusive. In this work, we present a theoretical framework that allows determining bounds on the thermodynamic affinity and on the concentrations of autocatalysts in mass-action autocatalytic networks. These bounds can be obtained solely from the stoichiometry of the underlying chemical reaction network, and are independent from the numerical values of kinetic parameters. This property holds in the specific regime where all the fluxes of the network are tightly coupled and maximal. Our method is applicable to large networks, and can be used to complement constraints-based modeling methods of metabolic networks, which typically do not provide predictions about thermodynamic properties or concentration ranges of metabolites, Comment: 27 pages, 5 figures, 1 table

Cell lineage statistics is a powerful tool for inferring cellular parameters, such as division rate, death rate or the population growth rate. Yet, in practice such an analysis suffers from a basic problem: how should we treat incomplete lineages that do not survive until the end of the experiment? Here, we develop a model-independent theoretical framework to address this issue. We show how to quantify fitness landscape, survivor bias and selection for arbitrary cell traits from cell lineage statistics in the presence of death, and we test this method using an experimental data set in which a cell population is exposed to a drug that kills a large fraction of the population. This analysis reveals that failing to properly account for dead lineages can lead to misleading fitness estimations. For simple trait dynamics, we prove and illustrate numerically that the fitness landscape and the survivor bias can in addition be used for the non-parametric estimation of the division and death rates, using only lineage histories. Our framework provides universal bounds on the population growth rate, and a fluctuation-response relation which quantifies the reduction of population growth rate due to the variability in death rate. Further, in the context of cell size control, we obtain generalizations of Powell's relation that link the distributions of generation times with the population growth rate, and show that the survivor bias can sometimes conceal the adder property, namely the constant increment of volume between birth and division.

This paper surveys the application and development of Artificial Intelligence (AI) in Satellite Communication (SatCom) and Non-Terrestrial Networks (NTN). We first present a comprehensive list of use cases, the relative challenges and the main AI tools capable of addressing those challenges. For each use case, we present the main motivation, a system description, the available non-AI solutions and the potential benefits and available works using AI. We also discuss the pros and cons of an on-board and on-ground AI-based architecture, and we revise the current commercial and research activities relevant to this topic. Next, we describe the state-of-the-art hardware solutions for developing ML in real satellite systems. Finally, we discuss the long-term developments of AI in the SatCom and NTN sectors and potential research directions. This paper provides a comprehensive and up-to-date overview of the opportunities and challenges offered by AI to improve the performance and efficiency of NTNs.

Organisms that grow and survive in uncertain environments may need to change their physiological state as the environment changes. When the environment is uncertain, one strategy known as bet-hedging is to make these changes randomly and independently of the environment, to ensure that at least part of the population is well adapted. Organisms that collect information from their environment may also use this information to modulate their changes of physiological states. We review these different strategies and point out parallels with the theory of optimal financial investments.

Ensemble methods combine the predictions of multiple models to improve performance, but they require significantly higher computation costs at inference time. To avoid these costs, multiple neural networks can be combined into one by averaging their weights. However, this usually performs significantly worse than ensembling. Weight averaging is only beneficial when different enough to benefit from combining them, but similar enough to average well. Based on this idea, we propose PopulAtion Parameter Averaging (PAPA): a method that combines the generality of ensembling with the efficiency of weight averaging. PAPA leverages a population of diverse models (trained on different data orders, augmentations, and regularizations) while slowly pushing the weights of the networks toward the population average of the weights. We also propose PAPA variants (PAPA-all, and PAPA-2) that average weights rarely rather than continuously; all methods increase generalization, but PAPA tends to perform best. PAPA reduces the performance gap between averaging and ensembling, increasing the average accuracy of a population of models by up to 0.8% on CIFAR-10, 1.9% on CIFAR-100, and 1.6% on ImageNet when compared to training independent (non-averaged) models., Comment: Blog post: https://ajolicoeur.wordpress.com/papa/, Code: https://github.com/SamsungSAILMontreal/PAPA, TMLR journal publication: https://openreview.net/forum?id=cPDVjsOytS

Pretraining a neural network on a large dataset is becoming a cornerstone in machine learning that is within the reach of only a few communities with large-resources. We aim at an ambitious goal of democratizing pretraining. Towards that goal, we train and release a single neural network that can predict high quality ImageNet parameters of other neural networks. By using predicted parameters for initialization we are able to boost training of diverse ImageNet models available in PyTorch. When transferred to other datasets, models initialized with predicted parameters also converge faster and reach competitive final performance., Comment: ICML 2023, camera ready (7 tables with extra results added), code and models are at https://github.com/SamsungSAILMontreal/ghn3

Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified guidelines. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here we present community-developed checklists for preparing light microscopy images and image analysis for publications. These checklists offer authors, readers, and publishers key recommendations for image formatting and annotation, color selection, data availability, and for reporting image analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby heighten the quality of microscopy data is in publications., Comment: 28 pages, 8 Figures, 3 Supplmentary Figures, Manuscript, Essential recommendations for publication of microscopy image data

Slot attention is a powerful method for object-centric modeling in images and videos. However, its set-equivariance limits its ability to handle videos with a dynamic number of objects because it cannot break ties. To overcome this limitation, we first establish a connection between slot attention and optimal transport. Based on this new perspective we propose MESH (Minimize Entropy of Sinkhorn): a cross-attention module that combines the tiebreaking properties of unregularized optimal transport with the speed of regularized optimal transport. We evaluate slot attention using MESH on multiple object-centric learning benchmarks and find significant improvements over slot attention in every setting., Comment: Published at International Conference on Machine Learning (ICML) 2023