68 results on '"A. Ghafoor Khan"'
Search Results
2. Hepatitis C prevalence and elimination planning in Pakistan, a bottom‐up approach accounting for provincial variation
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Ellen Mooneyhan, Huma Qureshi, Hassan Mahmood, Muhammad Tariq, Nabeel Ahmed Maqbool, Masood Anwar, Mujahid Aslam, Farooq Azam, Sarah Blach, Aamir Ghafoor Khan, Saeed Hamid, Tanweer Hussain, Mohammad Khalil Akhter, Ambreen Khan, Uzma Khan, Saira Khowaja, Khalid Mahmood, Samra Mazhar, Ahmad Nawaz, Ayub Rose, Gul Sabeen Azam Ghorezai, Sabeen Shah, Syeda Zahida Sarwar, and Homie Razavi
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Infectious Diseases ,Hepatology ,Virology - Published
- 2023
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3. Protection of Human rights and establishment of peace In the light of Islamic judiciary system
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Mr Abdul Ghafoor Khan and Dr Wahid Bakhsh
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Judiciary, Human Rights, Peace. Huquq ul Allah Huquq–al-Ibad - Abstract
Islam has divided the obligatory duties into Huquq ul Allah and Huquq–al-Ibad and complying with them guaranteed the success in this world and the hereafter. Islam not only connects rights and responsibilities with others, but also determines their priorities. Those nations where imbalance is created in discharging duties and rights get caught up in mischief and trouble as an unavoidable consequence as if human beings play the main role in the construction and destruction of the society peace. Maintaining justice as a whole is a vital part of an Islamic state; Allah (SWT) has ordered to show justice even with enemies. Justice cannot be denied in any case. In Islam the implementation of justice is as much important as the wreaking of a father cannot be taken from his son. Other religions also give importance to justice. Before Islam people had forgotten these principles but with the advent of Islam, the discrimination between rich and poor, master and slave was removed because favoring one side would create hatred and encourage class discrimination and would ultimately result in the decline of any state. Therefore, to protect the society from all such evils, Islam has laid importance on following rules of justice. In this perspective, the article describes the importance of justice, equality, reconstruction of judiciary and judicial system in an Islamic state., http://ojs.uopisl.pk/index.php/peshawarislamicus/article/view/80
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- 2022
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4. Product Line Diversification and Its Impact on Firm Performance
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Zia ur Rehman, Asad Khan, Rafique Ahmed Khuhro, and Abdul Ghafoor Khan
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The objective of the study is to measure product diversification’s impact on insurance firm’s financial performance in Pakistan. Analysis are carried out to examine how ownership structure, capitalization, group membership, firm size, diversification across business lines, industry concentration affects firm’s financial performance. Data from 2009-2019 is collected to measure the impact of diversification (entropy) on the risk- adjusted returns. Findings of the study reveal that business line diversification has strong positive effect on firm performance (for both ROA and ROE) which means that diversified firms perform better than non-diversified firms. For managers these findings are useful as they propose the need for diversification, capitalization, increase in size and group affiliation to enhance firm profitability.
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- 2021
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5. Conformational Flexibility in the Immunoglobulin-Like Domain of the Hepatitis C Virus Glycoprotein E2
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Ieva Vasiliauskaite, Ania Owsianka, Patrick England, Abdul Ghafoor Khan, Sarah Cole, Dorothea Bankwitz, Steven K. H. Foung, Thomas Pietschmann, Joseph Marcotrigiano, Felix A. Rey, Arvind H. Patel, and Thomas Krey
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CD81 binding site ,hepatitis C virus ,Ig-like domain ,conformational flexibility ,glycoprotein E2 ,monoclonal antibodies ,Microbiology ,QR1-502 - Abstract
ABSTRACT The hepatitis C virus (HCV) glycoprotein E2 is the major target of neutralizing antibodies and is therefore highly relevant for vaccine design. Its structure features a central immunoglobulin (Ig)-like β-sandwich that contributes to the binding site for the cellular receptor CD81. We show that a synthetic peptide corresponding to a β-strand of this Ig-like domain forms an α-helix in complex with the anti-E2 antibody DAO5, demonstrating an inside-out flip of hydrophobic residues and a secondary structure change in the composite CD81 binding site. A detailed interaction analysis of DAO5 and cross-competing neutralizing antibodies with soluble E2 revealed that the Ig-like domain is trapped by different antibodies in at least two distinct conformations. DAO5 specifically captures retrovirus particles bearing HCV glycoproteins (HCVpp) and infectious cell culture-derived HCV particles (HCVcc). Infection of cells by DAO5-captured HCVpp can be blocked by a cross-competing neutralizing antibody, indicating that a single virus particle simultaneously displays E2 molecules in more than one conformation on its surface. Such conformational plasticity of the HCV E2 receptor binding site has important implications for immunogen design. IMPORTANCE Recent advances in the treatment of hepatitis C virus (HCV) infection with direct-acting antiviral drugs have enabled the control of this major human pathogen. However, due to their high costs and limited accessibility in combination with the lack of awareness of the mostly asymptomatic infection, there is an unchanged urgent need for an effective vaccine. The viral glycoprotein E2 contains regions that are crucial for virus entry into the host cell, and antibodies that bind to these regions can neutralize infection. One of the major targets of neutralizing antibodies is the central immunoglobulin (Ig)-like domain within E2. We show here that this Ig-like domain is conformationally flexible at the surface of infectious HCV particles and pseudoparticles. Our study provides novel insights into the interactions of HCV E2 with the humoral immune system that should aid future vaccine development.
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- 2017
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6. 466 PREVALENCE AND IMPACT OF FRAILTY IN PATIENTS HOSPITALISED WITH COVID-19. THE SALFORD EXPERIENCE IN WAVES 1 AND 2
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Roxanna Short, Abdul Ghafoor Khan, R Upton, A Price, M Narro-Vidal, H Allafi, A. Vilches-Moraga, T Kneen, F R Espinoza, Ben Carter, and A Dafnis
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Aging ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Hazard ratio ,General Medicine ,Disease severity ,Internal medicine ,Severity of illness ,Clinical endpoint ,Medicine ,Observational study ,In patient ,Geriatrics and Gerontology ,business ,Survival analysis - Abstract
Introduction The COVID-19 pandemic has had an extensive impact on the frail older population, with significant rates of COVID-related hospital admissions and deaths amongst this vulnerable group. There is little evidence comparing the prevalence and impact of frailty amongst patients hospitalised with COVID-19 in wave 1 vs wave 2 of the pandemic. Methods Prospective observational study of all consecutive patients admitted to Salford Royal NHS Foundation Trust (SRFT) between 27th February and 28th of April 2020 (wave 1), and 1st October to 10th November 2020 (wave 2) with a diagnosis of COVID-19. The primary endpoint was in-hospital mortality. Patient demographics, co-morbidities, biochemical parameters, and frailty (using the Clinical Frailty Scale, score 1–4 = not frail, score 5–9 = frail) were collected. A Cox proportional hazards model associating wave and frailty with mortality was used. A logistic regression model was used to associate patient characteristics with wave. Both models adjusted for patient characteristics. Results A total of 700 patients were included (N = 429, wave 1; N = 271, wave 2). In wave 1, 42% (N = 180) were female; median age was 72; 37% (N = 160) were non-survivors, 49% (N = 212) were frail (CFS 5–9). In wave 2, 38% (N = 104) were female; median age was 73; 30% (N = 80) were non-survivors, 39% (N = 106) were frail. There was a reduction in mortality in wave 2, aHR = 0.71 (95% CI 0.53–0.94). Frailty was associated with increased mortality, after adjustment for age, wave and other patient characteristics. Patients were more frail in wave 1, and the effect of frailty was more pronounced in wave 1 vs wave 2. Conclusion Frailty is highly prevalent amongst patients of all ages admitted to SRFT with COVID-19. Higher scores of frailty are associated with increased mortality.
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- 2021
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7. Routine Post-operative Radiographs Following Hip Hemiarthroplasty: Is It a Necessity?
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Hassan Shafiq, Basharat Ghafoor Khan, Kamrul Hasan, Mahesh Pimplé, and Kavyansh Bhan
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partial hip arthroplasty ,medicine.medical_specialty ,business.industry ,bipolar hemiarthroplasty ,medicine.medical_treatment ,Radiography ,Hip hemiarthroplasty ,geriatric hip fracture ,General Engineering ,Avascular necrosis ,fracture neck of femur ,medicine.disease ,Femoral Neck Fractures ,Trauma ,Surgery ,Femoral head ,xray ,medicine.anatomical_structure ,Orthopedics ,Medicine ,Internal fixation ,Femur ,Post operative ,business - Abstract
Femoral neck fractures are one of the most common fractures treated by an Orthopaedic surgeon. Arthroplasty is the recommended management for intracapsular neck of femur fractures in the elderly population owing to the high risk of avascular necrosis of the femoral head following an internal fixation. Elderly patients with intracapsular fractures deemed high risk for anaesthesia (American Society of Anaesthesiology Grade more than 2) are recommended a hip hemiarthroplasty. Routine practice throughout the United Kingdom is to obtain a postoperative check radiograph for all hip hemiarthroplasty patients prior to their discharge from the hospital. This may be done for various reasons like checking the presence of any peri-prosthetic fracture, the position of the components along with the presence of any dislocation. However, it is unclear whether a radiograph is the sole identifier of such complications. Through this study, we aim to analyse whether routine recommendation of post-operative radiographs following hip hemiarthroplasty affects the clinical outcome, and whether it is effective in identifying potential complications before the patients report any signs or symptoms.
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- 2021
8. Ankle syndesmotic injury: Tightrope vs screw fixation, A clinical academic survey
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Mohammad Noah Hasan Khan, Muhammad Umer Rasool, Basharat Ghafoor Khan, Ahmad Faraz, Zafar Iqbal, Muhammad Hamzah Jamshed, and Hassan Shafiq
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medicine.medical_specialty ,Washer ,Syndesmosis ,business.industry ,Injury ,Surgeon preference ,General Medicine ,Review ,Syndesmotic Injury ,Middle grades ,Weight bear ,Surgery ,Screw fixation ,Syndesmotic screws ,medicine.anatomical_structure ,surgical procedures, operative ,Tightrope ,medicine ,Ankle ,business ,Fixation (histology) - Abstract
Objective The goal of the study is to find out the treatment of choice for ankle fractures involving syndesmotic injury based on level of experience of orthopaedic surgeons. Methods A survey was undertaken to analyse the management used for ankle fractures with syndesmotic injuries AO 44c in a 35-year-old patient. Surgeons attending an orthopaedic course were invited to take part in a survey sorted into groups: junior surgeons middle grades, and experienced. Pictures of an x ray were shown to the participants and treatment options were asked. Results 100 surgeons from 20 nations took part in the event. Juniors made up 39%, registrars made up 38%, and experienced doctors were 29%. Screws, were reported by 93% for syndesmosis fixation. 66% of surgeons who used screws for syndesmosis fixation favoured a single screw over two screws.3-4 cortices were virtually evenly divided in choice, with 54% preferring three and 46% preferring four cortices. Only 22% of the time did they utilise a washer with their screws. With 52% of patients, the most typical time for permitting them to weight bear was 4–6 weeks after surgery. At 1–2 months postoperatively, 34% preferred to remove the screw, and at 2-3 months postoperatively, 29% preferred to remove the screw. Conclusion Data show that the majority of junior level doctors handle their patients according to AO principles. The majority prefer one 3.5 mm screw positioned between 2 and 4 cm above the ankle joint, with three cortices being somewhat preferred. Despite the lack of data to support one procedure, the majority of people remove their screws within 1–3 months, Highlights • Various techniques have been described in literature for fixation of ankle fractures with syndesmotic injury. • To assess the management of AO 44c syndesmotic injury, a survey of participants at an international AO course was done. • The goal is to identify the treatment of choice based on surgeon’s experience to treat ankle fracture with syndesmotic injury.
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- 2021
9. The present and future disease burden of hepatitis C virus infections with todayʼs treatment paradigm – volume 3
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Sibley, A., Han, K. H., Abourached, A., Lesmana, L. A., Makara, M., Jafri, W., Salupere, R., Assiri, A. M., Goldis, A., Abaalkhail, F., Abbas, Z., Abdou, A., Al Braiki, F., Al Hosani, F., Al Jaberi, K., Al Khatry, M., Al Mulla, M. A., Al Quraishi, H., Al Rifai, A., Al Serkal, Y., Alam, A., Alavian, S. M., Alashgar, H. I., Alawadhi, S., Al-Dabal, L., Aldins, P., Alfaleh, F. Z., Alghamdi, A. S., Al-Hakeem, R., Aljumah, A. A., Almessabi, A., Alqutub, A. N., Alswat, K. A., Altraif, I., Alzaabi, M., Andrea, N., Babatin, M. A., Baqir, A., Barakat, M. T., Bergmann, O. M., Bizri, A. R., Blach, S., Chaudhry, A., Choi, M. S., Diab, T., Djauzi, S., El Hassan, E. S., El Khoury, S., Estes, C., Fakhry, S., Farooqi, J. I., Fridjonsdottir, H., Gani, R. A., Ghafoor Khan, A., Gheorghe, L., Gottfredsson, M., Gregorcic, S., Gunter, J., Hajarizadeh, B., Hamid, S., Hasan, I., Hashim, A., Horvath, G., Hunyady, B., Husni, R., Jeruma, A., Jonasson, J. G., Karlsdottir, B., Kim, D. Y., Kim, Y. S., Koutoubi, Z., Liakina, V., Lim, Y. S., Löve, A., Maimets, M., Malekzadeh, R., Matičič, M., Memon, M. S., Merat, S., Mokhbat, J. E., Mourad, F. H., Muljono, D. H., Nawaz, A., Nugrahini, N., Olafsson, S., Priohutomo, S., Qureshi, H., Rassam, P., Razavi, H., Razavi-Shearer, D., Razavi-Shearer, K., Rozentale, B., Sadik, M., Saeed, K., Salamat, A., Sanai, F. M., Sanityoso Sulaiman, A., Sayegh, R. A., Sharara, A. I., Siddiq, M., Siddiqui, A. M., Sigmundsdottir, G., Sigurdardottir, B., Speiciene, D., Sulaiman, A., Sultan, M. A., Taha, M., Tanaka, J., Tarifi, H., Tayyab, G., Tolmane, I., Ud din, M., Umar, M., Valantinas, J., Videčnik-Zorman, J., Yaghi, C., Yunihastuti, E., Yusuf, M. A., Zuberi, B. F., and Schmelzer, J. D.
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- 2015
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10. Historical epidemiology of hepatitis C virus (HCV) in select countries – volume 3
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Liakina, V., Hamid, S., Tanaka, J., Olafsson, S., Sharara, A. I., Alavian, S. M., Gheorghe, L., El Hassan, E. S., Abaalkhail, F., Abbas, Z., Abdou, A., Abourached, A., Al Braiki, F., Al Hosani, F., Al Jaberi, K., Al Khatry, M., Al Mulla, M. A., Al Quraishi, H., Al Rifai, A., Al Serkal, Y., Alam, A., Alashgar, H. I., Alawadhi, S., Al-Dabal, L., Aldins, P., Alfaleh, F. Z., Alghamdi, A. S., Al-Hakeem, R., Aljumah, A. A., Almessabi, A., Alqutub, A. N., Alswat, K. A., Altraif, I., Alzaabi, M., Andrea, N., Assiri, A. M., Babatin, M. A., Baqir, A., Barakat, M. T., Bergmann, O. M., Bizri, A. R., Blach, S., Chaudhry, A., Choi, M. S., Diab, T., Djauzi, S., El Khoury, S., Estes, C., Fakhry, S., Farooqi, J. I., Fridjonsdottir, H., Gani, R. A., Ghafoor Khan, A., Goldis, A., Gottfredsson, M., Gregorcic, S., Hajarizadeh, B., Han, K. H., Hasan, I., Hashim, A., Horvath, G., Hunyady, B., Husni, R., Jafri, W., Jeruma, A., Jonasson, J. G., Karlsdottir, B., Kim, D. Y., Kim, Y. S., Koutoubi, Z., Lesmana, L. A., Lim, Y. S., Löve, A., Maimets, M., Makara, M., Malekzadeh, R., Matičič, M., Memon, M. S., Merat, S., Mokhbat, J. E., Mourad, F. H., Muljono, D. H., Nawaz, A., Nugrahini, N., Priohutomo, S., Qureshi, H., Rassam, P., Razavi, H., Razavi-Shearer, D., Razavi-Shearer, K., Rozentale, B., Sadik, M., Saeed, K., Salamat, A., Salupere, R., Sanai, F. M., Sanityoso Sulaiman, A., Sayegh, R. A., Schmelzer, J. D., Sibley, A., Siddiq, M., Siddiqui, A. M., Sigmundsdottir, G., Sigurdardottir, B., Speiciene, D., Sulaiman, A., Sultan, M. A., Taha, M., Tarifi, H., Tayyab, G., Tolmane, I., Ud din, M., Umar, M., Valantinas, J., Videčnik-Zorman, J., Yaghi, C., Yunihastuti, E., Yusuf, M. A., Zuberi, B. F., and Gunter, J.
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- 2015
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11. Strategies to manage hepatitis C virus infection disease burden – volume 3
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Alfaleh, F. Z., Nugrahini, N., Matičič, M., Tolmane, I., Alzaabi, M., Hajarizadeh, B., Valantinas, J., Kim, D. Y., Hunyady, B., Abaalkhail, F., Abbas, Z., Abdou, A., Abourached, A., Al Braiki, F., Al Hosani, F., Al Jaberi, K., Al Khatry, M., Al Mulla, M. A., Al Quraishi, H., Al Rifai, A., Al Serkal, Y., Alam, A., Alashgar, H. I., Alavian, S. M., Alawadhi, S., Al-Dabal, L., Aldins, P., Alghamdi, A. S., Al-Hakeem, R., Aljumah, A. A., Almessabi, A., Alqutub, A. N., Alswat, K. A., Altraif, I., Andrea, N., Assiri, A. M., Babatin, M. A., Baqir, A., Barakat, M. T., Bergmann, O. M., Bizri, A. R., Chaudhry, A., Choi, M. S., Diab, T., Djauzi, S., El Hassan, E. S., El Khoury, S., Estes, C., Fakhry, S., Farooqi, J. I., Fridjonsdottir, H., Gani, R. A., Ghafoor Khan, A., Gheorghe, L., Goldis, A., Gottfredsson, M., Gregorcic, S., Gunter, J., Hamid, S., Han, K. H., Hasan, I., Hashim, A., Horvath, G., Husni, R., Jafri, W., Jeruma, A., Jonasson, J. G., Karlsdottir, B., Kim, Y. S., Koutoubi, Z., Lesmana, L. A., Liakina, V., Lim, Y. S., Löve, A., Maimets, M., Makara, M., Malekzadeh, R., Memon, M. S., Merat, S., Mokhbat, J. E., Mourad, F. H., Muljono, D. H., Nawaz, A., Olafsson, S., Priohutomo, S., Qureshi, H., Rassam, P., Razavi, H., Razavi-Shearer, D., Razavi-Shearer, K., Rozentale, B., Sadik, M., Saeed, K., Salamat, A., Salupere, R., Sanai, F. M., Sanityoso Sulaiman, A., Sayegh, R. A., Schmelzer, J. D., Sharara, A. I., Sibley, A., Siddiq, M., Siddiqui, A. M., Sigmundsdottir, G., Sigurdardottir, B., Speiciene, D., Sulaiman, A., Sultan, M. A., Taha, M., Tanaka, J., Tarifi, H., Tayyab, G., Ud din, M., Umar, M., Videčnik-Zorman, J., Yaghi, C., Yunihastuti, E., Yusuf, M. A., Zuberi, B. F., and Blach, S.
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- 2015
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12. Hepatitis C prevalence and elimination in Pakistan; a bottom-up approach accounting for provincial variation
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Ellen Mooneyhan, Huma Qureshi, Hassan Mahmood, Samra Mazhar, Muhammad Tariq, Nabeel Ahmed Maqbool, Ambreen Khan, Masood Anwar, Sarah Blach, Homie Razavi, Sabeen Shah, Saeed Sadiq Hamid, Tanweer Hussain, Saira Khowaja, Uzma Khan, Syeda Zahida Sarwar, Khalid Mahmood, Gul Sabeen Azam Ghorezai, Farooq Azam, Ayub Rose, Mohammad Khalil Akhter, Aamir Ghafoor Khan, Mujahid Aslam, and Ahmad Nawaz
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Hepatology - Published
- 2022
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13. Identification of a novel drug lead that inhibits HCV infection and cell-to-cell transmission by targeting the HCV E2 glycoprotein.
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Reem R Al Olaby, Laurence Cocquerel, Adam Zemla, Laure Saas, Jean Dubuisson, Jost Vielmetter, Joseph Marcotrigiano, Abdul Ghafoor Khan, Felipe Vences Catalan, Alexander L Perryman, Joel S Freundlich, Stefano Forli, Shoshana Levy, Rod Balhorn, and Hassan M Azzazy
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Medicine ,Science - Abstract
Hepatitis C Virus (HCV) infects 200 million individuals worldwide. Although several FDA approved drugs targeting the HCV serine protease and polymerase have shown promising results, there is a need for better drugs that are effective in treating a broader range of HCV genotypes and subtypes without being used in combination with interferon and/or ribavirin. Recently, two crystal structures of the core of the HCV E2 protein (E2c) have been determined, providing structural information that can now be used to target the E2 protein and develop drugs that disrupt the early stages of HCV infection by blocking E2's interaction with different host factors. Using the E2c structure as a template, we have created a structural model of the E2 protein core (residues 421-645) that contains the three amino acid segments that are not present in either structure. Computational docking of a diverse library of 1,715 small molecules to this model led to the identification of a set of 34 ligands predicted to bind near conserved amino acid residues involved in the HCV E2: CD81 interaction. Surface plasmon resonance detection was used to screen the ligand set for binding to recombinant E2 protein, and the best binders were subsequently tested to identify compounds that inhibit the infection of Huh-7 cells by HCV. One compound, 281816, blocked E2 binding to CD81 and inhibited HCV infection in a genotype-independent manner with IC50's ranging from 2.2 µM to 4.6 µM. 281816 blocked the early and late steps of cell-free HCV entry and also abrogated the cell-to-cell transmission of HCV. Collectively the results obtained with this new structural model of E2c suggest the development of small molecule inhibitors such as 281816 that target E2 and disrupt its interaction with CD81 may provide a new paradigm for HCV treatment.
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- 2014
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14. FREQUENCY OF HELICOBACTER PYLORI INFECTION BY TESTING STOOL ANTIGEN IN PATIENTS WITH FUNCTIONAL DYSPEPSIA
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Muhammad Kamran Hassan, Moeen-ul Haq, Naimatullah Khan, Zafar Saifullah, Abbas Khan Khattak, and Aamir Ghafoor Khan
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dyspepsia ,helicobacter pylori ,Medicine - Abstract
Background: Functional dyspepsia is the most common cause of dyspepsia. Depending upon the geography a variable number of functional dyspepsia patients are infected with H. pylori and it is a common practice to treat it. The benefits of this test and treat strategy are the cure of peptic ulcer disease, its future prevention and symptom resolution in a significant subset of patients. The objective of this study was to determine the frequency of H. pylori infection in patients with functional dyspepsia by detecting H. pylori antigen in the stool. Material & Methods: Two hundred and twenty-one patients with functional dyspepsia fulfilling the Rome III criteria were included in the study in consecutive manner. They were classified into different groups based on their predominant symptoms. H. pylori stool antigen was tested to see its frequency in the functional dyspepsia patients. Results: Out of 221 patients included in the study 126(57%) were males and 95(43%) females. Mean age was 35.33 +11.34 years. The mean duration of symptoms was 2.28 + 2.21 years. Out of all patients 31% of the patients belonged to postprandial distress syndrome, 29% to epigastric pain syndrome and 40% to both groups. H. pylori stool antigen was positive in 51(25%) patients. Conclusion: Stool antigen test is a good non-interventional test for the detection of active infection in patients with functional dyspepsia which is comparable between various dyspepsia groups.
- Published
- 2014
15. Applications of coagulation-flocculation and nanotechnology in water treatment
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Farwa Nadeem, Muhammad Nadeem Akhtar, Muhammad Zahid, Asma Hanif, Farkhanda Ghafoor Khan, and Muhammad Asif Hanif
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chemistry.chemical_compound ,Flocculation ,Membrane ,Nanocomposite ,Chemistry ,Coagulation (water treatment) ,Sewage treatment ,Nanotechnology ,Pullulan ,Water treatment ,Nanofiltration - Abstract
Nanotechnology holds great potential in advancing wastewater treatment to improve treatment efficiency and to supplement the water supply. Nanomaterials based on metallic, carbonaceous, polymeric, and magnetic nanoadsorbents are discussed in detail in this chapter, along with nanofiltration membranes, thin-film composite membranes, fabricated membranes, nanocomposite membranes, polymeric nanocomposite membranes, and enzyme incorporated nanotechnology-based processes. Some conventional treatment processes including coagulation-flocculation for removal of organic and inorganic pollutants along with suspended solid particles are still in use for water treatment. The recent advancements in the area of coagulation-flocculation for wastewater treatment are critically reviewed and evaluated. This chapter also emphasizes destabilization of colloids, removal of inorganic and organic matter (particulate and/or dissolved), removal of metals and anions, and removal of microorganisms using coagulation-flocculation. Various chemical or natural coagulants, flocculants and their derivatives and the use of low-cost biopolymeric materials such as algin, guar gum pectin, starch, chitin, dextran, and pullulan derivatives are also described in detail.
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- 2021
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16. Contributors
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Kamel A. Abd-Elsalam, Hirra Ahmad, Farah K. Ahmed, Muhammad Nadeem Akhtar, Saba Akram, Imran Ali, Muhammad Ahsan Amjed, Adriana Anteng Anggorowati, Mohammad Ashfaq, Muhammad Ibrar Asif, Sunandan Baruah, Haq Nawaz Bhatti, Ijaz Ahmad Bhatti, Suman V. Budihal, Divya Chauhan, Enrico Drioli, Sayan Deb Dutta, Asma El Zerey-Belaskri, S. Emmanuel Joshua Jebasingh, Nady A. Fathy, Mohamed Amine Gacem, Keya Ganguly, Asma Hanif, Muhammad Asif Hanif, Haiou Huang, Tajamal Hussain, Tariqul Islam, Suryadi Ismadji, Josef Jampílek, T. Jesi Reeta, Dipjyoti Kalita, Tayyaba Khalid, Fareeda Khan, Farkhanda Ghafoor Khan, Imran Khan, Zahid M. Khan, Katarína Kráľová, Alfin Kurniawan, Ki-Taek Lim, Hongyan Luan, S. Mangalanagasundari, Asim Mansha, Manal Mostafa, K. Murugan, Farwa Mushtaq, Ghulam Mustafa, K. Muthu, Farwa Nadeem, Nimra Nadeem, Syed Ali Raza Naqvi, Iffat Naz, Saima Noreen, Aminata Ould El Hadj Khelil, Khalid Parwez, Dinesh K. Patel, K. Paulkumar, Changsheng Peng, Irum Perveen, Rashid Pervez, Anum Rashid, Zulfiqar Ahmad Rehan, Valentin Romanovski, Shella Permatasari Santoso, Arnab Kumar Sarkar, Shama Sehar, Imran Shahid, Muhammad Shahzeb Khan, Tauqir A. Sherazi, Felycia Edi Soetaredjo, U.T. Syed, Asma Tabasum, Noor Tahir, Neetu Talreja, Aafia Tehrim, Alia Telli, Asmat Ullah, Ikram Ullah, Kubra Ulucan-Altuntas, Joachim Wink, Maria Yuliansa, and Muhammad Zahid
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- 2021
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17. Crossed Cerebellar Diaschisis in a Child with Status Epilepticus
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Mian Ayaz Ul Haq, Talha Durrani, Aamir Ghafoor Khan, Hira Ishaq, and Tanveer Fatima
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Crossed cerebellar diaschisis ,Status Epilepticus ,business.industry ,Cerebellar Diseases ,Cerebellum ,medicine ,Humans ,General Medicine ,Status epilepticus ,medicine.symptom ,business ,Child ,Neuroscience - Abstract
Null.
- Published
- 2020
18. Possible Impact of Robotics and Artificial Intelligence on Oman’s Logistics Sector: A Review
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Asma Ghafoor Khan, Vikas Rao Naidu, and Muhammad Ahmed
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Order (exchange) ,business.industry ,Robot ,Robotics ,Business ,Artificial intelligence ,E-commerce ,Descriptive research ,Global logistics ,Boom - Abstract
Changing times require industries to adopt ever-changing technologies in order to stay afloat and compete at the global stage. The logistics industry is experiencing a global boom due to progress in the e-commerce sector and ever-increasing consumer needs of the modern world. Oman’s long-term vision includes logistic sector as one the main contributors to the country’s GDP. Sea Ports such as Sohar and Al Duqm are another indication of the Sultanate’s ambitions to diversify the economy for the post-oil era. The logistics sector in Oman needs to adopt technology that not only helps it with improving its operations but helps reshape the industry standards in Oman. Robot adoption is the latest trend in the global logistics industry and Oman’s leading logistics companies need to adopt it too. The combination of logistic robots and right artificial intelligent programming can do wonders for a company. Artificial intelligence complements robotics to achieve their tasks more efficiently and helps with better robot maintenance. Oman’s logistics sector can benefit greatly from the introduction of logistic robots on both practical fronts as well as the marketing front. A research was conducted based on one of Oman’s leading and most prominent logistics company to identify the level of robotics and artificial intelligence in use. The descriptive approach of research was applied to attain the required data through both quantitative and qualitative means. Interviews and surveys were conducted in order to justify the requirement of the proposed research. The aim of the study was to build a case for implementation of robotics in conjunction with artificial intelligence in Oman’s logistics sector in order for Oman’s logistics sector to fulfil its potential and compete at global stage.
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- 2020
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19. Study to estimate the average blood loss in different orthopedic procedures: A retrospective review
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K. Yasser Jamal, Hassan Shafiq, Sadia Farrukh, Basharat Ghafoor Khan, Ammal Imran Qureshi, and Mohammad Noah Hasan Khan
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medicine.medical_specialty ,Tourniquet ,Side effect ,Tourniquet time ,business.industry ,Trauma center ,Blood loss ,General Medicine ,Confidence interval ,Surgery ,Orthopedic surgery ,medicine ,Change of dressing ,Femur ,Hemoglobin ,Analysis of variance ,Orthopedic Procedures ,business ,Cohort Study - Abstract
Background In orthopedic surgery, bleeding is an inevitable side effect. The study's aim was to provide estimated blood loss values in various orthopedic procedures and take a step towards developing statistically reliable formulae. This can provide blood loss values in orthopedic surgery, which will be a very good tool for operative planning. Materials and methods We reviewed case notes of 282 patients in a UK based trauma center from December 2020 to March 2021,who had undergone a various orthopedic procedures. The results were analyzed using SPSS version 25. Results Most common fracture was neck of femur (37.5%)followed by intertrochanteric fractures(27.6%). Paired t-test was used, and there is good evidence (t281 = 14.957, p = 0.000) that intraoperative transfusions increased HB levels in patients (t281 = 14.957, p = 0.000) by an average of 1.331 points, with a 95% confidence interval of 1.156–1.506. As a result, the variation between the Pre-op and Post-op HB levels is statistically important but minimal. We can see that the mean blood loss is statistically different in different age groups (0.03) of patients and by the existence of co-morbids using analysis of variance (0.04). The average number of days spent in the hospital varies by surgical type (0.01) performed on patients. Conclusion Orthopedic surgery can be associated with high levels of blood loss. There is a significant relation between fracture form and age groups, change of wound dressing (COD), use of a tourniquet, and drain insertion, no connection was noted between gender and fracture types., Highlights • Bleeding is an unavoidable side effect of most surgical operations, including orthopaedic surgery. • There is a scarcity of literature that can provide us an estimate of how much blood will be lost during various orthopaedic operations. • Goal of the study was to offer estimated blood loss estimates in various orthopaedic operations. • There is a significant relationship between fracture type and age groups, change of wound dressing (COD), use of a tourniquet.
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- 2021
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20. Use of abbreviations in consent forms for orthopaedic surgery: A pilot study
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Muhammad Hamzah Jamshed, Neshat Anjum, Ammal Imran Qureshi, Hassan Shafiq, Basharat Ghafoor Khan, M.Noah H. Khan, and Muhammad Waqas Ilyas
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medicine.medical_specialty ,Health professionals ,Abbreviations ,business.industry ,education ,Orthopedic ,Audit ,General Medicine ,humanities ,Frequent use ,Consent ,Family medicine ,Quality Improvement Study ,Orthopedic surgery ,Orthopaedic procedures ,medicine ,Surgery ,Legal document ,Consent Forms ,business ,Orthopaedic trauma - Abstract
Background Consent is a process of communication and the consent form is an important legal document of the evidence of discussion between doctor and patients. We observed frequent use of abbreviations in the consent forms in our department that can result in misunderstanding and miscommunication when consenting patients for orthopaedic procedures. Methods We completed an audit cycle starting by reviewing a total of 350 consent forms retrospectively in level one trauma centres in October–November of 2019 for different orthopaedic trauma procedures. The standards for the project were guidelines published by the general medical council (GMC), The royal college of surgeons (RCS) Glasgow, and the British orthopaedic association (BOA).The results were presented at our mortality and morbidity meeting. Written Feedback was obtained from the attending members on how a change can be implemented to increase ccompliance in filling consent forms. A generic email was sent to all medical professionals to avoid the use of abbreviations on the document and encourage colleagues to point out errors if they spot them. The use of full medical terms and to avoid abbreviations in consent form was well advertised, The re-audit was performed for the period of January & February 2020 that included 400 consent forms. The results were analysed and compared with our original audit results. Results The use of abbreviations declined from 54% in first audit to 22% in the re-audit. DVT and PE were the most common abbreviations. Conclusion This audit cycle has shown the importance of education and reminders to the health professionals in achieving better adherence to the guidelines and improves patient care., Highlights • Consent is as important as any basic principle on which surgical practice is carried out. • There are many different guidelines in place to prevent using abbreviations. • Use of simple language is important for good understanding of the procedure especially in consenting. • Our study looked at different abbreviations used and how they can be prevented.
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- 2021
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21. Mitigation of T-cell dependent immunogenicity by reengineering factor VIIa analogue
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Gary Bembridge, Stepan S Surov, H.A. Daniel Lagassé, Mikhail V Ovanesov, Zuben E. Sauna, Wojciech Jankowski, Mark H. Fogg, Edward A. Cloake, Joseph Marcotrigiano, Joseph R. McGill, Campbell Bunce, Katarzyna I. Jankowska, and Abdul Ghafoor Khan
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0301 basic medicine ,T-Lymphocytes ,Population ,Factor VIIa ,030204 cardiovascular system & hematology ,Pharmacology ,Hemophilia A ,Protein Engineering ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Hemophilias ,Medicine ,Humans ,Immunogenetic Phenomena ,education ,Deimmunization ,Cells, Cultured ,Factor IX ,Blood coagulation test ,education.field_of_study ,Factor VII ,business.industry ,Immunogenicity ,Thrombin ,Hematology ,Turoctocog alfa ,Gene Therapy ,Recombinant Proteins ,030104 developmental biology ,chemistry ,Blood Coagulation Tests ,business ,medicine.drug - Abstract
Vatreptacog alfa (VA), a recombinant activated human factor VII (rFVIIa) variant with 3 amino acid substitutions, was developed to provide increased procoagulant activity in hemophilia patients with inhibitors to factor VIII or factor IX. In phase 3 clinical trials, changes introduced during the bioengineering of VA resulted in the development of undesired anti-drug antibodies in some patients, leading to the termination of a potentially promising therapeutic protein product. Here, we use preclinical biomarkers associated with clinical immunogenicity to validate our deimmunization strategy applied to this bioengineered rFVIIa analog. The reengineered rFVIIa analog variants retained increased intrinsic thrombin generation activity but did not elicit T-cell responses in peripheral blood mononuclear cells isolated from 50 HLA typed subjects representing the human population. Our algorithm, rational immunogenicity determination, offers a broadly applicable deimmunizing strategy for bioengineered proteins.
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- 2019
22. Functional and immunogenic characterization of diverse HCV glycoprotein E2 variants
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John Lok Man Law, Thomas Pietschmann, Joseph Marcotrigiano, Dorothea Bankwitz, Kai Schulze, Darren Hockman, Eike Steinmann, Richard J. C. Brown, Thomas Krey, Leona Dold, Alexander W. Tarr, Florian Klein, Michael P. Manns, Patrick Behrendt, Luisa J Ströh, Abdul Ghafoor Khan, Abel Viejo-Borbolla, Jason Wong, Mandy Doepke, Michael Houghton, Ulrich Spengler, Víctor González-Motos, Carlos A. Guzmán, Tanvi Khera, Daniel Todt, Michael Logan, Institut de Recherche sur les Maladies Virales et Hépatiques (IVH), Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), TWINCORE, Zentrum für experimentelle und klinische Infektionsforschung GmbH,Feodor-Lynen Str. 7, 30625 Hannover, Germany, and HZI, Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7 38124 Braunschweig, Germany.
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0301 basic medicine ,Glycosylation ,Immunogen ,viruses ,Hepacivirus ,Epitope ,Epitopes ,Mice ,chemistry.chemical_compound ,0302 clinical medicine ,Viral Envelope Proteins ,chemistry.chemical_classification ,Recombinant proteins ,Mice, Inbred BALB C ,biology ,Vaccination ,Hepatitis C ,HCV ,Hcv ,Receptors, Virus ,030211 gastroenterology & hepatology ,Antibody ,chemical and pharmacologic phenomena ,Cross Reactions ,Antibodies ,Tetraspanin 28 ,Viral Proteins ,03 medical and health sciences ,Antigen ,Cell Line, Tumor ,Animals ,Humans ,Binding site ,Glycoproteins ,Binding Sites ,Hepatology ,Viral Vaccines ,biochemical phenomena, metabolism, and nutrition ,Hepatitis C Antibodies ,Virology ,Hypervariable region ,HEK293 Cells ,030104 developmental biology ,chemistry ,biology.protein ,Glycoprotein ,Broadly Neutralizing Antibodies ,Gene Deletion ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
Background & Aims Induction of cross-reactive antibodies targeting conserved epitopes of the envelope proteins E1E2 is a key requirement for an hepatitis C virus vaccine. Conserved epitopes like the viral CD81-binding site are targeted by rare broadly neutralizing antibodies. However, these viral segments are occluded by variable regions and glycans. We aimed to identify antigens exposing conserved epitopes and to characterize their immunogenicity. Methods We created hepatitis C virus variants with mutated glycosylation sites and/or hypervariable region 1 (HVR1). Exposure of the CD81 binding site and conserved epitopes was quantified by soluble CD81 and antibody interaction and neutralization assays. E2 or E1-E2 heterodimers with mutations causing epitope exposure were used to immunize mice. Vaccine-induced antibodies were examined and compared with patient-derived antibodies. Results Mutant viruses bound soluble CD81 and antibodies targeting the CD81 binding site with enhanced efficacy. Mice immunized with E2 or E1E2 heterodimers incorporating these modifications mounted strong, cross-binding, and non-interfering antibodies. E2-induced antibodies neutralized the autologous virus but they were not cross-neutralizing. Conclusions Viruses lacking the HVR1 and selected glycosylation sites expose the CD81 binding site and cross-neutralization antibody epitopes. Recombinant E2 proteins carrying these modifications induce strong cross-binding but not cross-neutralizing antibodies. Lay summary Conserved viral epitopes can be made considerably more accessible for binding of potently neutralizing antibodies by deletion of hypervariable region 1 and selected glycosylation sites. Recombinant E2 proteins carrying these mutations are unable to elicit cross-neutralizing antibodies suggesting that exposure of conserved epitopes is not sufficient to focus antibody responses on production of cross-neutralizing antibodies.
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- 2019
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23. Overcoming Challenges of Hepatitis C Virus Envelope Glycoprotein Production in Mammalian Cells
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Yuanyuan Wang, Samantha A. Yost, Abdul Ghafoor Khan, Jillian Whidby, and Joseph Marcotrigiano
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chemistry.chemical_classification ,0303 health sciences ,Glycan ,biology ,Chemistry ,Hepatitis C virus ,medicine.disease_cause ,biology.organism_classification ,Yeast ,Cell biology ,03 medical and health sciences ,Transduction (genetics) ,0302 clinical medicine ,Ectodomain ,Lentivirus ,medicine ,biology.protein ,Glycoprotein ,030217 neurology & neurosurgery ,Bacteria ,030304 developmental biology - Abstract
Posttranslational modifications (PTMs) are often required for proper folding and physiological function of proteins, including the envelope glycoproteins 1 and 2 (E1 and E2) of hepatitis C virus (HCV). Commonly used expression systems such as bacteria, yeast, and baculovirus produce soluble HCV E1 and E2 at very low yields, as the cellular environment and molecular machinery necessary for PTMs may be suboptimal or missing. Here, we describe an expression system for HCV E2 ectodomain (eE2) with 11 N-linked glycans and eight disulfide bonds, which combines lentivirus transduction of mammalian cells and a continuous growth, adherent cell bioreactor. It is environmentally friendly, as well as cost- and time-efficient compared to other methods of recombinant protein expression in mammalian systems with final yields of eE2 approaching 60 mg/L of cell culture supernatant. eE2 produced by this system is amenable to a variety of biophysical studies, including structural determination by X-ray crystallography. Considering the ease of use and flexibility, this method can be applied to express an array of difficult target proteins in a variety of mammalian cell lines.
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- 2018
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24. CD81 Receptor Regions outside the Large Extracellular Loop Determine Hepatitis C Virus Entry into Hepatoma Cells
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Lisa Lasswitz, Pia Banse, Thomas Pietschmann, Sina Kahl, Abdul Ghafoor Khan, Rebecca Moeller, Janina Bruening, Gisa Gerold, Joseph Marcotrigiano, and TWINCORE, Zentrum für experimentelle und klinischeInfektionsforschung GmbH, Feodor-Lynen-Str. 7, 30625 Hannover, Germany.
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hepatitis C virus ,0301 basic medicine ,HCV ,tetraspanin ,CD81 ,receptor ,chimeras ,susceptibility-determining domains ,transmembrane domain four ,cholesterol-binding residue ,lcsh:QR1-502 ,Infektionsmedicin ,Hepacivirus ,medicine.disease_cause ,lcsh:Microbiology ,Viral Envelope Proteins ,Tetraspanin ,Tumor Cells, Cultured ,Receptor ,Recombinant Proteins ,Cell biology ,Transmembrane domain ,Infectious Diseases ,embryonic structures ,Receptors, Virus ,Intracellular ,Protein Binding ,Infectious Medicine ,Hepatitis C virus ,Biology ,Article ,Cell Line ,Tetraspanin 28 ,03 medical and health sciences ,Chimera (genetics) ,Protein Domains ,Virology ,Extracellular ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Sequence Homology, Amino Acid ,Virus Internalization ,digestive system diseases ,030104 developmental biology ,Mutation ,Hepatocytes - Abstract
Hepatitis C virus (HCV) enters human hepatocytes using four essential entry factors, one of which is human CD81 (hCD81). The tetraspanin hCD81 contains a large extracellular loop (LEL), which interacts with the E2 glycoprotein of HCV. The role of the non-LEL regions of hCD81 (intracellular tails, four transmembrane domains, small extracellular loop and intracellular loop) is poorly understood. Here, we studied the contribution of these domains to HCV susceptibility of hepatoma cells by generating chimeras of related tetraspanins with the hCD81 LEL. Our results show that non-LEL regions in addition to the LEL determine susceptibility of cells to HCV. While closely related tetraspanins (X. tropicalis CD81 and D. rerio CD81) functionally complement hCD81 non-LEL regions, distantly related tetraspanins (C. elegans TSP9 amd D. melanogaster TSP96F) do not and tetraspanins with intermediate homology (hCD9) show an intermediate phenotype. Tetraspanin homology and susceptibility to HCV correlate positively. For some chimeras, infectivity correlates with surface expression. In contrast, the hCD9 chimera is fully surface expressed, binds HCV E2 glycoprotein but is impaired in HCV receptor function. We demonstrate that a cholesterol-coordinating glutamate residue in CD81, which hCD9 lacks, promotes HCV infection. This work highlights the hCD81 non-LEL regions as additional HCV susceptibility-determining factors.
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- 2018
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25. The autoinhibitory CARD2-Hel2i Interface of RIG-I governs RNA selection
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Anand Ramanathan, Fuguo Jiang, Abdul Ghafoor Khan, Matthew T. Miller, Joseph Marcotrigiano, Swapnil C. Devarkar, and Smita S. Patel
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0301 basic medicine ,Molecular Sequence Data ,Fluorescence Polarization ,Biology ,DEAD-box RNA Helicases ,03 medical and health sciences ,Genetics ,Humans ,Receptors, Immunologic ,Small nucleolar RNA ,Binding site ,DEAD Box Protein 58 ,RNA, Double-Stranded ,Adenosine Triphosphatases ,Binding Sites ,Base Sequence ,RIG-I ,RNA ,Interferon-beta ,Non-coding RNA ,Molecular biology ,Long non-coding RNA ,Protein Structure, Tertiary ,Cell biology ,HEK293 Cells ,030104 developmental biology ,Signal transduction - Abstract
RIG-I (Retinoic Acid Inducible Gene-I) is a cytosolic innate immune receptor that detects atypical features in viral RNAs as foreign to initiate a Type I interferon signaling response. RIG-I is present in an autoinhibited state in the cytoplasm and activated by blunt-ended double-stranded (ds)RNAs carrying a 5′ triphosphate (ppp) moiety. These features found in many pathogenic RNAs are absent in cellular RNAs due to post-transcriptional modifications of RNA ends. Although RIG-I is structurally well characterized, the mechanistic basis for RIG-I's remarkable ability to discriminate between cellular and pathogenic RNAs is not completely understood. We show that RIG-I's selectivity for blunt-ended 5′-ppp dsRNAs is ≈3000 times higher than non-blunt ended dsRNAs commonly found in cellular RNAs. Discrimination occurs at multiple stages and signaling RNAs have high affinity and ATPase turnover rate and thus a high katpase/Kd. We show that RIG-I uses its autoinhibitory CARD2-Hel2i (second CARD-helicase insertion domain) interface as a barrier to select against non-blunt ended dsRNAs. Accordingly, deletion of CARDs or point mutations in the CARD2-Hel2i interface decreases the selectivity from ≈3000 to 150 and 750, respectively. We propose that the CARD2-Hel2i interface is a ‘gate’ that prevents cellular RNAs from generating productive complexes that can signal.
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- 2015
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26. Quantitative Proteomics Identifies Serum Response Factor Binding Protein 1 as a Host Factor for Hepatitis C Virus Entry
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Florian W. R. Vondran, Janina Bruening, Joseph Marcotrigiano, Felix Meissner, Thomas F. Baumert, Kathrin Welsch, Matthias Mann, Thomas Pietschmann, Gisa Gerold, Lars Kaderali, Abdul Ghafoor Khan, Paula Monteiro Perin, and Charles M. Rice
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Proteomics ,Receptor complex ,viruses ,Hepatitis C virus ,Quantitative proteomics ,Hepacivirus ,Sciences du Vivant [q-bio]/Médecine humaine et pathologie ,Biology ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Cell Line, Tumor ,medicine ,Humans ,lcsh:QH301-705.5 ,030304 developmental biology ,Host factor ,0303 health sciences ,Virus receptor ,030302 biochemistry & molecular biology ,virus diseases ,Virus Internalization ,biology.organism_classification ,Virology ,digestive system diseases ,3. Good health ,NS2-3 protease ,lcsh:Biology (General) ,Vesicular stomatitis virus ,Transcription Factors ,CD81 - Abstract
SummaryHepatitis C virus (HCV) enters human hepatocytes through a multistep mechanism involving, among other host proteins, the virus receptor CD81. How CD81 governs HCV entry is poorly characterized, and CD81 protein interactions after virus binding remain elusive. We have developed a quantitative proteomics protocol to identify HCV-triggered CD81 interactions and found 26 dynamic binding partners. At least six of these proteins promote HCV infection, as indicated by RNAi. We further characterized serum response factor binding protein 1 (SRFBP1), which is recruited to CD81 during HCV uptake and supports HCV infection in hepatoma cells and primary human hepatocytes. SRFBP1 facilitates host cell penetration by all seven HCV genotypes, but not of vesicular stomatitis virus and human coronavirus. Thus, SRFBP1 is an HCV-specific, pan-genotypic host entry factor. These results demonstrate the use of quantitative proteomics to elucidate pathogen entry and underscore the importance of host protein-protein interactions during HCV invasion.
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- 2015
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27. Prevalence of non alcoholic fatty liver and Non alcoholic Steatohepatitis in Peshawar Cantonment, Khyber Pakhtunkhwa, Pakistan
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Abdus Saboor, Shah, Shahzeb, Khan, Haroon, Rahim, Kamran Ahmad, Chishti, and Aamir Ghafoor, Khan
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Adult ,Male ,Biopsy ,Middle Aged ,Body Mass Index ,Young Adult ,Sex Factors ,Liver ,Non-alcoholic Fatty Liver Disease ,Surveys and Questionnaires ,Hypertension ,Diabetes Mellitus ,Prevalence ,Humans ,Female ,Pakistan ,Obesity ,Prospective Studies ,Aged ,Ultrasonography - Abstract
Non-alcoholic fatty liver disease prevalence has not been well established. The aims of this study was to define prospectively non-alcoholic steatohepatitis (NASH) and non-alcoholic fatty liver disease (NAFLD) prevalence in hospitalized and ambulatory patients 20-65 years old during June 2013 to June 2014 were selected from Combined Military Hospital Peshawar Cantonment area. A base line questionnaire and right upper quadrant ultrasound was completed by all patients. On identifications of fatty liver among the selected cases further lab test data and liver biopsy reports were obtained. Mean BMI of female was 29.9 + 5.65 while prevalence of hypertension and diabetes was 49.8% and 16.6% respectively. Among all patients 62% were Punjabies, 23% were Pathans while 12% were Sindhies. Overall NAFLD prevalence was 47% while NASH was confirmed in 20 patients (12.3% of total and 30%of ultrasound positive patients). Pathans had the highest prevalence of NAFLD (58.5%) as compared to Punjabies (44.5%) and Sindhies (35.3%). Pathans also had a higher prevalence of NASH compared with Punjabies (19.5% VS 10%: P= 0.03). In general, NAFLD patients were more prevalent among male (59%), Diabetic (P0.00005), hypertensive (P0.00005) and older (P =0.005). They consumed more fast food (P=.049) had a higher BMI (P0.0005) and had little or no exercise as compared to their normal or non NAFLD counter parts (P=0.02). NAFLD was found in 75% and NASH in 22.5% among the 26 diabetic patients. ALT, AST, BMI, insulin, quantitative insulin sensitivity checks index and cytokeratin - 18 correlated with NASH. It was concluded that NAFLD and NASH prevalence is higher than estimated previously, Pathans and Patients with diabetes are at high risk.
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- 2018
28. Conformational flexibility in the immunoglobulin-like domain of the Hepatitis C Virus Glycoprotein E2
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Dorothea Bankwitz, Steven K. H. Foung, Ieva Vasiliauskaite, Arvind H. Patel, Thomas Krey, Joseph Marcotrigiano, Sarah Cole, Patrick England, Félix A. Rey, Ania M. Owsianka, Thomas Pietschmann, Abdul Ghafoor Khan, TWINCORE, Zentrum für experimentelle und klinische Infektionsforschung GmbH,Feodor-Lynen Str. 7, 30625 Hannover, Germany., Virologie Structurale - Structural Virology, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), MRC - University of Glasgow Centre for Virus Research, Biophysique Moléculaire (Plate-forme), Rutgers University System (Rutgers), Centre for Experimental and Clinical Infection Research [Hanover] (TWINCORE), Department of Pathology [Stanford], Stanford Medicine, Stanford University-Stanford University, Centre for Experimental and Clinical Infection Research (TWINCORE), Helmholtz Centre for Infection Research (HZI)-Medizinische Hochschule Hannover (MHH), Hannover Medical School [Hannover] (MHH), German Center for Infection Research, Partnersite Munich (DZIF), This work was supported by an ANRS grant and recurrent funding from the Institut Pasteur to F.A.R., an ANRS grant to T.K., and funding to T.K. by the Deutsche Forschungsgemeinschaft within Project B10 of the Collaborative Research Centre SFB900 'Chronic Infections: Microbial Persistence and Its Control.' T.P. was supported by the Collaborative Research Centre SFB 900 project A6. Work in A.H.P.’s laboratory was supported by the Medical Research Council, United Kingdom (MC_UU12014/2)., and We thank Francois Bontems for critical reading of the manuscript, Ahmed Haouz and Patrick Weber from the crystallization platform for help in crystallization, and staff of the synchrotron beamline Proxima-1 at Synchrotron Soleil and PX-I at the Swiss Light Sources for help during data collection.
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0301 basic medicine ,conformational flexibility ,hepatitis C virus ,Immunogen ,Protein Conformation ,MESH: Virus Internalization ,[SDV]Life Sciences [q-bio] ,Hepacivirus ,medicine.disease_cause ,Antibodies, Viral ,Crystallography, X-Ray ,MESH: Antibodies, Monoclonal ,MESH: Antibodies, Neutralizing ,MESH: Tetraspanin 28 ,Epitopes ,MESH: Protein Conformation ,Viral Envelope Proteins ,MESH: Hepacivirus ,Neutralizing antibody ,Antibodies, Monoclonal ,Hepatitis C ,QR1-502 ,MESH: HEK293 Cells ,glycoprotein E2 ,vaccine design ,monoclonal antibodies ,Antibody ,Protein Binding ,Research Article ,Viral Hepatitis Vaccines ,MESH: Epitopes ,medicine.drug_class ,Viral protein ,Biology ,CD81 binding site ,Monoclonal antibody ,Microbiology ,Virus ,Tetraspanin 28 ,03 medical and health sciences ,Viral entry ,Virology ,medicine ,MESH: Protein Binding ,Humans ,MESH: Hepatitis C ,MESH: Immunoglobulin Domains ,MESH: Humans ,Binding Sites ,030102 biochemistry & molecular biology ,MESH: Viral Hepatitis Vaccines ,Virus Internalization ,MESH: Crystallography, X-Ray ,Antibodies, Neutralizing ,Ig-like domain ,NS2-3 protease ,030104 developmental biology ,HEK293 Cells ,MESH: Binding Sites ,MESH: Viral Envelope Proteins ,biology.protein ,Immunoglobulin Domains ,MESH: Antibodies, Viral - Abstract
The hepatitis C virus (HCV) glycoprotein E2 is the major target of neutralizing antibodies and is therefore highly relevant for vaccine design. Its structure features a central immunoglobulin (Ig)-like β-sandwich that contributes to the binding site for the cellular receptor CD81. We show that a synthetic peptide corresponding to a β-strand of this Ig-like domain forms an α-helix in complex with the anti-E2 antibody DAO5, demonstrating an inside-out flip of hydrophobic residues and a secondary structure change in the composite CD81 binding site. A detailed interaction analysis of DAO5 and cross-competing neutralizing antibodies with soluble E2 revealed that the Ig-like domain is trapped by different antibodies in at least two distinct conformations. DAO5 specifically captures retrovirus particles bearing HCV glycoproteins (HCVpp) and infectious cell culture-derived HCV particles (HCVcc). Infection of cells by DAO5-captured HCVpp can be blocked by a cross-competing neutralizing antibody, indicating that a single virus particle simultaneously displays E2 molecules in more than one conformation on its surface. Such conformational plasticity of the HCV E2 receptor binding site has important implications for immunogen design., IMPORTANCE Recent advances in the treatment of hepatitis C virus (HCV) infection with direct-acting antiviral drugs have enabled the control of this major human pathogen. However, due to their high costs and limited accessibility in combination with the lack of awareness of the mostly asymptomatic infection, there is an unchanged urgent need for an effective vaccine. The viral glycoprotein E2 contains regions that are crucial for virus entry into the host cell, and antibodies that bind to these regions can neutralize infection. One of the major targets of neutralizing antibodies is the central immunoglobulin (Ig)-like domain within E2. We show here that this Ig-like domain is conformationally flexible at the surface of infectious HCV particles and pseudoparticles. Our study provides novel insights into the interactions of HCV E2 with the humoral immune system that should aid future vaccine development.
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- 2017
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29. World Gastroenterology Organisation Global Guidelines on Obesity
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Eve Roberts, Lisbeth Mathus-Vliegen, Suleiman S. Fedail, Gabriele Riccardi, Aamir Ghafoor Khan, Richard H. Hunt, Ton Lemair, James Toouli, Pedro Kaufmann, Justus Krabshuis, Michael Fried, James Garisch, and Davor Štimac
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,MEDLINE ,Global Health ,Gastroenterology ,Young Adult ,obesity ,diet ,body mass index ,guidelines ,Internal medicine ,medicine ,Global health ,Humans ,Obesity ,Young adult ,Child ,Aged ,business.industry ,Middle Aged ,medicine.disease ,Child, Preschool ,Female ,business ,Body mass index - Published
- 2012
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30. World Gastroenterology Organisation Global Guideline
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Peter Malfertheiner, Luis M. Bustos Fernandez, Aamir Ghafoor Khan, Benjamin C.Y. Wong, James Garisch, Khean-Lee Goh, S. Fedail, Alan B. R. Thomson, Rakesh K. Tandon, Ole Østergaard Thomsen, Saeed Hamid, Greger Lindberg, Justus Krabshuis, and Anton LeMair
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Adult ,Male ,medicine.medical_specialty ,Constipation ,business.industry ,Perspective (graphical) ,Gastroenterology ,MEDLINE ,Guideline ,Global Health ,Family medicine ,Internal medicine ,medicine ,Global health ,Humans ,Female ,medicine.symptom ,business ,Societies, Medical - Published
- 2011
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31. Entry of a heparan sulphate-binding HRV8 variant strictly depends on dynamin but not on clathrin, caveolin, and flotillin
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Leszek Gajdzik, Thomas C. Marlovits, Renate Fuchs, Angela Pickl-Herk, Abdul Ghafoor Khan, and Dieter Blaas
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Rhinovirus ,ICAM-1 ,Heparan sulphate ,Endocytosis ,Caveolins ,Clathrin ,Cell Line ,Dynamin II ,03 medical and health sciences ,Cytopathogenic Effect, Viral ,Virology ,Caveolin ,medicine ,Humans ,Serial Passage ,030304 developmental biology ,Dynamin ,Macropinocytosis ,0303 health sciences ,biology ,Pinocytosis ,030302 biochemistry & molecular biology ,Membrane Proteins ,Colocalization ,Virus Internalization ,Intercellular Adhesion Molecule-1 ,Amiloride ,Cell biology ,Host-Pathogen Interactions ,biology.protein ,Entry inhibitors ,Endocytic pathway ,medicine.drug - Abstract
The major group human rhinovirus type 8 can enter cells via heparan sulphate. When internalized into ICAM-1 negative rhabdomyosarcoma (RD) cells, HRV8 accumulated in the cells but caused CPE only after 3days when used at high MOI. Adaptation by three blind passages alternating between RD and HeLa cells resulted in variant HRV8v with decreased stability at acidic pH allowing for productive infection in the absence of ICAM-1. HRV8v produced CPE at 10 times lower MOI within 1day. Confocal fluorescence microscopy colocalization and the use of pharmacological and dominant negative inhibitors revealed that viral uptake is clathrin, caveolin, and flotillin independent. However, it is blocked by dynasore, amiloride, and EIPA. Furthermore, HRV8v induced FITC-dextran uptake and colocalized with this fluid phase marker. Except for the complete inhibition by dynasore, the entry pathway of HRV8v via HS is similar to that of HRV14 in RD cells that overexpress ICAM-1.
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- 2011
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32. Impact of flexible scheduling on employee performance regarding stress and work-family conflict
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Raja Abdul Ghafoor Khan, Furqan Ahmad Khan, Dr. Muhammad Aslam Khan, and Mohsin Shakeel
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Work-family conflict, flexible scheduling, work-family balance, employee performance ,jel:M1 - Abstract
Stress, work-family conflicts and flexible scheduling are three of the most important elements in organizational studies. The focus of current study is to understand the effect of Stress,work family conflicts and flexible scheduling on employee’s performance and also to understand whether flexible scheduling helps in reducing stress and work-family conflicts or not. The back bone of this study is the secondary data comprised of comprehensive literature review. A survey has also been conducted to strengthen the idea comprising of a sample of 70 employees from different organizations. 53 of them responded and the respond rate was 75%. Descriptive statistics is used to analyze the data. Results show that stress and work family conflict negatively affect the employee performance and flexible scheduling has a positive effect on employee performance. Primary study as well as literature review showed that flexible scheduling also helps in reducing stress and work-family conflicts. However, results are strongly based on the literature review i.e. secondary data.
- Published
- 2011
33. Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I
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Anand Ramanathan, Smita S. Patel, Chen Wang, Matthew T. Miller, Swapnil C. Devarkar, Joseph Marcotrigiano, Fuguo Jiang, and Abdul Ghafoor Khan
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0301 basic medicine ,RNA Caps ,Cell signaling ,viruses ,Amino Acid Motifs ,Retinoic acid ,Guanosine ,chemical and pharmacologic phenomena ,Biology ,medicine.disease_cause ,Crystallography, X-Ray ,Methylation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Adenosine Triphosphate ,medicine ,Humans ,Nucleotide ,RNA, Double-Stranded ,chemistry.chemical_classification ,Mutation ,Multidisciplinary ,Innate immune system ,RIG-I ,Hydrolysis ,RNA ,virus diseases ,biochemical phenomena, metabolism, and nutrition ,Biological Sciences ,Immunity, Innate ,Protein Structure, Tertiary ,030104 developmental biology ,HEK293 Cells ,chemistry ,Biochemistry ,030220 oncology & carcinogenesis ,Nucleic Acid Conformation ,Carrier Proteins ,RNA Helicases ,Signal Transduction - Abstract
RNAs with 5′-triphosphate (ppp) are detected in the cytoplasm principally by the innate immune receptor Retinoic Acid Inducible Gene-I (RIG-I), whose activation triggers a Type I IFN response. It is thought that self RNAs like mRNAs are not recognized by RIG-I because 5′ppp is capped by the addition of a 7-methyl guanosine (m7G) (Cap-0) and a 2′-O-methyl (2′-OMe) group to the 5′-end nucleotide ribose (Cap-1). Here we provide structural and mechanistic basis for exact roles of capping and 2′-O-methylation in evading RIG-I recognition. Surprisingly, Cap-0 and 5′ppp double-stranded (ds) RNAs bind to RIG-I with nearly identical Kd values and activate RIG-I’s ATPase and cellular signaling response to similar extents. On the other hand, Cap-0 and 5′ppp single-stranded RNAs did not bind RIG-I and are signaling inactive. Three crystal structures of RIG-I complexes with dsRNAs bearing 5′OH, 5′ppp, and Cap-0 show that RIG-I can accommodate the m7G cap in a cavity created through conformational changes in the helicase-motif IVa without perturbing the ppp interactions. In contrast, Cap-1 modifications abrogate RIG-I signaling through a mechanism involving the H830 residue, which we show is crucial for discriminating between Cap-0 and Cap-1 RNAs. Furthermore, m7G capping works synergistically with 2′-O-methylation to weaken RNA affinity by 200-fold and lower ATPase activity. Interestingly, a single H830A mutation restores both high-affinity binding and signaling activity with 2′-O-methylated dsRNAs. Our work provides new structural insights into the mechanisms of host and viral immune evasion from RIG-I, explaining the complexity of cap structures over evolution.
- Published
- 2016
34. Assessment of New Upland Cotton Genotypes (Gossypium hirsutum L.) for Yield Stability and Adaptability
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Nasir Ghafoor Khan, Noor Ul Islam, Muhammad Saeed Iqbal, and Muhammad Naveed
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Yield (engineering) ,Agronomy ,media_common.quotation_subject ,Plant Science ,Biology ,Agronomy and Crop Science ,Gossypium hirsutum ,Adaptability ,media_common - Published
- 2007
- Full Text
- View/download PDF
35. Historical epidemiology of hepatitis C virus (HCV) in select countries – volume 3
- Author
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V. Liakina, S. Hamid, J. Tanaka, S. Olafsson, A. I. Sharara, S. M. Alavian, L. Gheorghe, E. S. El Hassan, F. Abaalkhail, Z. Abbas, A. Abdou, A. Abourached, F. Al Braiki, F. Al Hosani, K. Al Jaberi, M. Al Khatry, M. A. Al Mulla, H. Al Quraishi, A. Al Rifai, Y. Al Serkal, A. Alam, H. I. Alashgar, S. Alawadhi, L. Al-Dabal, P. Aldins, F. Z. Alfaleh, A. S. Alghamdi, R. Al-Hakeem, A. A. Aljumah, A. Almessabi, A. N. Alqutub, K. A. Alswat, I. Altraif, M. Alzaabi, N. Andrea, A. M. Assiri, M. A. Babatin, A. Baqir, M. T. Barakat, O. M. Bergmann, A. R. Bizri, S. Blach, A. Chaudhry, M. S. Choi, T. Diab, S. Djauzi, S. El Khoury, C. Estes, S. Fakhry, J. I. Farooqi, H. Fridjonsdottir, R. A. Gani, A. Ghafoor Khan, A. Goldis, M. Gottfredsson, S. Gregorcic, B. Hajarizadeh, K. H. Han, I. Hasan, A. Hashim, G. Horvath, B. Hunyady, R. Husni, W. Jafri, A. Jeruma, J.G. Jonasson, B. Karlsdottir, D. Y. Kim, Y. S. Kim, Z. Koutoubi, L. A. Lesmana, Y. S. Lim, A. Löve, M. Maimets, M. Makara, R. Malekzadeh, M. Matičič, M. S. Memon, S. Merat, J. E. Mokhbat, F. H. Mourad, D. H. Muljono, A. Nawaz, N. Nugrahini, S. Priohutomo, H. Qureshi, P. Rassam, H. Razavi, D. Razavi-Shearer, K. Razavi-Shearer, B. Rozentale, M. Sadik, K. Saeed, A. Salamat, R. Salupere, F. M. Sanai, A. Sanityoso Sulaiman, R. A. Sayegh, J. D. Schmelzer, A. Sibley, M. Siddiq, A. M. Siddiqui, G. Sigmundsdottir, B. Sigurdardottir, D. Speiciene, A. Sulaiman, M. A. Sultan, M. Taha, H. Tarifi, G. Tayyab, I. Tolmane, M. Ud din, M. Umar, J. Valantinas, J. Videčnik-Zorman, C. Yaghi, E. Yunihastuti, M. A. Yusuf, B. F. Zuberi, and J. Gunter
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,Genotype ,Population ,Hepacivirus ,Global Health ,Antiviral Agents ,Young Adult ,Virology ,Environmental health ,Epidemiology ,Prevalence ,Global health ,Humans ,Medicine ,Infection control ,Child ,education ,Disease burden ,Aged ,Aged, 80 and over ,education.field_of_study ,Hepatology ,business.industry ,Public health ,Infant, Newborn ,Infant ,Hepatitis C ,Hepatitis C, Chronic ,Middle Aged ,medicine.disease ,Liver Transplantation ,Infectious Diseases ,Child, Preschool ,Immunology ,Female ,business ,Viral hepatitis - Abstract
Detailed, country‐specific epidemiological data are needed to characterize the burden of chronic hepatitis C virus (HCV) infection around the world. With new treatment options available, policy makers and public health officials must reconsider national strategies for infection control. In this study of 15 countries, published and unpublished data on HCV prevalence, viraemia, genotype, age and gender distribution, liver transplants and diagnosis and treatment rates were gathered from the literature and validated by expert consensus in each country. Viraemic prevalence in this study ranged from 0.2% in Iran and Lebanon to 4.2% in Pakistan. The largest viraemic populations were in Pakistan (7001000 cases) and Indonesia (3187000 cases). Injection drug use (IDU) and a historically unsafe blood supply were major risk factors in most countries. Diagnosis, treatment and liver transplant rates varied widely between countries. However, comparison across countries was difficult as the number of cases changes over time. Access to reliable data on measures such as these is critical for the development of future strategies to manage the disease burden.
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- 2015
36. Strategies to manage hepatitis C virus infection disease burden - volume 3
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M. T. Barakat, N. Nugrahini, Andri Sanityoso Sulaiman, S. El Khoury, Béla Hunyady, Y. Al Serkal, Liana Gheorghe, E. S. El Hassan, K. Saeed, M. Siddiq, H. Tarifi, A. Abdou, Homie Razavi, Fadi H. Mourad, Abdul Rahman Bizri, Do Young Kim, Matti Maimets, Devin Razavi-Shearer, S. Gregorcic, Ibrahim Altraif, Chris Estes, A. Salamat, Hamad I. Al-Ashgar, Riina Salupere, Sarah Blach, R. Husni, A. Sibley, F. Al Hosani, P. Aldins, S. Alawadhi, A. Baqir, S. Priohutomo, Mihály Makara, A. Abourached, A. Löve, Ieva Tolmane, Saeed Hamid, B. Karlsdottir, Adrian Goldis, Abdulrahman Aljumah, Samsuridjal Djauzi, Almoutaz Hashim, Laurentius A. Lesmana, Khalid Alswat, Jon G. Jonasson, Danute Speiciene, Young-Suk Lim, Arif Nawaz, M. Taha, R. Al-Hakeem, Abdullah S. Alghamdi, Rino Alvani Gani, Young Seok Kim, Abdullah M. Assiri, J. Videčnik-Zorman, A. Al Rifai, A. Sanityoso Sulaiman, Muhammad S. Memon, H. Fridjonsdottir, M. A. Al Mulla, Faisal M. Sanai, Faisal Abaalkhail, L. Al-Dabal, R. A. Sayegh, A. M. Siddiqui, Gabor Horvath, Moon Suk Choi, Cesar Yaghi, M. Sadik, Irsan Hasan, A. Almessabi, S. Fakhry, Zaigham Abbas, Ala I. Sharara, Evy Yunihastuti, Jacques E Mokhbat, David H. Muljono, Jonas Valantinas, Asad Chaudhry, K. Al Jaberi, H. Al Quraishi, B. Sigurdardottir, Altaf Alam, Mohamed A. Babatin, N. Andrea, F. Al Braiki, Kathryn Razavi-Shearer, Reza Malekzadeh, H. Qureshi, G. Sigmundsdottir, Marwa Sultan, Jonathan Schmelzer, Javed Iqbal Farooqi, Mojca Matičič, Junko Tanaka, S. Olafsson, Behzad Hajarizadeh, Shahin Merat, M. Alzaabi, Valentina Liakina, Adel Alqutub, Seyed M Alavian, G. Tayyab, M. Al Khatry, T. Diab, M. Ud Din, Jessie Gunter, Kwang Hyub Han, Faleh Z. Al-Faleh, Bader Faiyaz Zuberi, Wasim Jafri, P. Rassam, Magnus Gottfredsson, Baiba Rozentale, Agita Jeruma, A. Ghafoor Khan, M. Umar, Ottar M. Bergmann, Z. Koutoubi, and M. A. Yusuf
- Subjects
Adult ,Male ,medicine.medical_specialty ,Cure rate ,Pediatrics ,Asia ,Adolescent ,Hepatitis C virus ,medicine.disease_cause ,Antiviral Agents ,Infection disease ,Middle East ,Young Adult ,Virology ,medicine ,Prevalence ,Humans ,Child ,Disease burden ,Aged ,Aged, 80 and over ,Harm reduction ,Models, Statistical ,Hepatology ,business.industry ,Diagnostic Tests, Routine ,Incidence ,Infant, Newborn ,Infant ,Hepatitis C, Chronic ,Middle Aged ,Treatment efficacy ,Drug Utilization ,Surgery ,Liver Transplantation ,Europe ,Infectious Diseases ,Child, Preschool ,Communicable Disease Control ,Female ,Birth cohort ,business - Abstract
The hepatitis C virus (HCV) epidemic was forecasted through 2030 for 15 countries in Europe, the Middle East and Asia, and the relative impact of two scenarios was considered: increased treatment efficacy while holding the annual number of treated patients constant and increased treatment efficacy and an increased annual number of treated patients. Increasing levels of diagnosis and treatment, in combination with improved treatment efficacy, were critical for achieving substantial reductions in disease burden. A 90% reduction in total HCV infections within 15 years is feasible in most countries studied, but it required a coordinated effort to introduce harm reduction programmes to reduce new infections, screening to identify those already infected and treatment with high cure rate therapies. This suggests that increased capacity for screening and treatment will be critical in many countries. Birth cohort screening is a helpful tool for maximizing resources. Among European countries, the majority of patients were born between 1940 and 1985. A wider range of birth cohorts was seen in the Middle East and Asia (between 1925 and 1995).
- Published
- 2015
37. The present and future disease burden of hepatitis C virus infections with today's treatment paradigm - volume 3
- Author
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A. Sibley, K. H. Han, A. Abourached, L. A. Lesmana, M. Makara, W. Jafri, R. Salupere, A. M. Assiri, A. Goldis, F. Abaalkhail, Z. Abbas, A. Abdou, F. Al Braiki, F. Al Hosani, K. Al Jaberi, M. Al Khatry, M. A. Al Mulla, H. Al Quraishi, A. Al Rifai, Y. Al Serkal, A. Alam, S. M. Alavian, H. I. Alashgar, S. Alawadhi, L. Al-Dabal, P. Aldins, F. Z. Alfaleh, A. S. Alghamdi, R. Al-Hakeem, A. A. Aljumah, A. Almessabi, A. N. Alqutub, K. A. Alswat, I. Altraif, M. Alzaabi, N. Andrea, M. A. Babatin, A. Baqir, M. T. Barakat, O. M. Bergmann, A. R. Bizri, S. Blach, A. Chaudhry, M. S. Choi, T. Diab, S. Djauzi, E. S. El Hassan, S. El Khoury, C. Estes, S. Fakhry, J. I. Farooqi, H. Fridjonsdottir, R. A. Gani, A. Ghafoor Khan, L. Gheorghe, M. Gottfredsson, S. Gregorcic, J. Gunter, B. Hajarizadeh, S. Hamid, I. Hasan, A. Hashim, G. Horvath, B. Hunyady, R. Husni, A. Jeruma, J. G. Jonasson, B. Karlsdottir, D. Y. Kim, Y. S. Kim, Z. Koutoubi, V. Liakina, Y. S. Lim, A. Löve, M. Maimets, R. Malekzadeh, M. Matičič, M. S. Memon, S. Merat, J. E. Mokhbat, F. H. Mourad, D. H. Muljono, A. Nawaz, N. Nugrahini, S. Olafsson, S. Priohutomo, H. Qureshi, P. Rassam, H. Razavi, D. Razavi-Shearer, K. Razavi-Shearer, B. Rozentale, M. Sadik, K. Saeed, A. Salamat, F. M. Sanai, A. Sanityoso Sulaiman, R. A. Sayegh, A. I. Sharara, M. Siddiq, A. M. Siddiqui, G. Sigmundsdottir, B. Sigurdardottir, D. Speiciene, A. Sulaiman, M. A. Sultan, M. Taha, J. Tanaka, H. Tarifi, G. Tayyab, I. Tolmane, M. Ud din, M. Umar, J. Valantinas, J. Videčnik-Zorman, C. Yaghi, E. Yunihastuti, M. A. Yusuf, B. F. Zuberi, and J. D. Schmelzer
- Subjects
Adult ,Aged, 80 and over ,Male ,Models, Statistical ,Hepatology ,Adolescent ,Incidence ,Hepacivirus ,Hepatitis C, Chronic ,Middle Aged ,Global Health ,Survival Analysis ,Young Adult ,Infectious Diseases ,Cost of Illness ,Virology ,Prevalence ,Humans ,Female ,Viremia ,Aged - Abstract
The total number, morbidity and mortality attributed to viraemic hepatitis C virus (HCV) infections change over time making it difficult to compare reported estimates from different years. Models were developed for 15 countries to quantify and characterize the viraemic population and forecast the changes in the infected population and the corresponding disease burden from 2014 to 2030. With the exception of Iceland, Iran, Latvia and Pakistan, the total number of viraemic HCV infections is expected to decline from 2014 to 2030, but the associated morbidity and mortality are expected to increase in all countries except for Japan and South Korea. In the latter two countries, mortality due to an ageing population will drive down prevalence, morbidity and mortality. On the other hand, both countries have already experienced a rapid increase in HCV‐related mortality and morbidity. HCV‐related morbidity and mortality are projected to increase between 2014 and 2030 in all other countries as result of an ageing HCV‐infected population. Thus, although the total number of HCV countries is expected to decline in most countries studied, the associated disease burden is expected to increase. The current treatment paradigm is inadequate if large reductions in HCV‐related morbidity and mortality are to be achieved.
- Published
- 2015
38. HCV glycoprotein structures: what to expect from the unexpected
- Author
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Abdul Ghafoor Khan, Matthew T. Miller, and Joseph Marcotrigiano
- Subjects
chemistry.chemical_classification ,biology ,Hepatitis C virus ,Hepacivirus ,Virion ,medicine.disease_cause ,Pathogenicity ,biology.organism_classification ,Protein multimerization ,Virology ,Virus ,Article ,Protein Structure, Tertiary ,Immune system ,chemistry ,Viral Envelope Proteins ,Immunology ,medicine ,Cost of treatment ,Humans ,Protein Multimerization ,Glycoprotein - Abstract
Hepatitis C virus (HCV) is continuing to spread worldwide, adding three million new infections each year. Currently approved therapies are highly effective; however, access to them is limited due to the high cost of treatment. Therefore, a cost effective vaccine and alternative antivirals remain essential. HCV envelope glycoproteins, E1 and E2, heterodimerize on the virion surface and are the major determinant for virus pathogenicity and host immune response. Recent structural insights into amino-terminal domain of E1 and core of E2 have revealed unexpected folds not present in glycoproteins from related viruses. Here we discuss these structural findings with respect to their role in HCV entry and impact on potential vaccine design and new antivirals.
- Published
- 2015
39. MEASUREMENT OF REAL NATIONAL INCOME IN PAKISTAN
- Author
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Abdul Ghafoor Khan
- Subjects
Economics and Econometrics ,Economic growth ,Measures of national income and output ,Economics - Published
- 2006
- Full Text
- View/download PDF
40. Effect of Optimum Harvesting Dates (OHD) on the Quality of Red Delicious Apple
- Author
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M. Zafarullah ., Nasir Ghafoor Khan, Tariq Ahmad, Yasser Durrani, and Javid Ullah
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Horticulture ,media_common.quotation_subject ,Quality (business) ,Plant Science ,Biology ,Agronomy and Crop Science ,media_common - Published
- 2003
- Full Text
- View/download PDF
41. Identification of a Novel Drug Lead That Inhibits HCV Infection and Cell-to-Cell Transmission by Targeting the HCV E2 Glycoprotein
- Author
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Shoshana Levy, Jost Vielmetter, Laure Saas, Hassan M.E. Azzazy, Laurence Cocquerel, Jean Dubuisson, Reem R. Al Olaby, Adam Zemla, Felipe Vences Catalan, Stefano Forli, Alexander L. Perryman, Joseph Marcotrigiano, Rod Balhorn, Joel S. Freundlich, and Abdul Ghafoor Khan
- Subjects
RNA viruses ,Models, Molecular ,Viral Diseases ,Gastroenterology and hepatology ,lcsh:Medicine ,Plasma protein binding ,Protein Structure Prediction ,Hepacivirus ,medicine.disease_cause ,Crystallography, X-Ray ,Ligands ,Biochemistry ,Hepatitis ,Viral Envelope Proteins ,Interferon ,Biochemical Simulations ,Macromolecular Structure Analysis ,Biomacromolecule-Ligand Interactions ,lcsh:Science ,Polymerase ,Multidisciplinary ,Hepatitis C virus ,virus diseases ,Medical microbiology ,Small molecule ,Hepatitis C ,Recombinant Proteins ,Infectious hepatitis ,Infectious Diseases ,Viruses ,Thermodynamics ,medicine.drug ,Research Article ,Computer Modeling ,Protein Binding ,Protein Structure ,Computer and Information Sciences ,Genotype ,Cell Survival ,Molecular Sequence Data ,Biology ,Microbiology ,Antiviral Agents ,Tetraspanin 28 ,Cell Line, Tumor ,medicine ,Humans ,Amino Acid Sequence ,Binding site ,Molecular Biology ,Liver diseases ,ssRNA viruses ,Medicine and health sciences ,Binding Sites ,Biology and life sciences ,Flaviviruses ,lcsh:R ,Viral pathogens ,Organisms ,Proteins ,Computational Biology ,Surface Plasmon Resonance ,Virus Internalization ,Virology ,Molecular biology ,Microbial pathogens ,Kinetics ,Docking (molecular) ,Structural Homology, Protein ,biology.protein ,Molecular Complexes ,lcsh:Q ,CD81 - Abstract
Hepatitis C Virus (HCV) infects 200 million individuals worldwide. Although several FDA approved drugs targeting the HCV serine protease and polymerase have shown promising results, there is a need for better drugs that are effective in treating a broader range of HCV genotypes and subtypes without being used in combination with interferon and/or ribavirin. Recently, two crystal structures of the core of the HCV E2 protein (E2c) have been determined, providing structural information that can now be used to target the E2 protein and develop drugs that disrupt the early stages of HCV infection by blocking E2’s interaction with different host factors. Using the E2c structure as a template, we have created a structural model of the E2 protein core (residues 421–645) that contains the three amino acid segments that are not present in either structure. Computational docking of a diverse library of 1,715 small molecules to this model led to the identification of a set of 34 ligands predicted to bind near conserved amino acid residues involved in the HCV E2: CD81 interaction. Surface plasmon resonance detection was used to screen the ligand set for binding to recombinant E2 protein, and the best binders were subsequently tested to identify compounds that inhibit the infection of Huh-7 cells by HCV. One compound, 281816, blocked E2 binding to CD81 and inhibited HCV infection in a genotype-independent manner with IC50’s ranging from 2.2 µM to 4.6 µM. 281816 blocked the early and late steps of cell-free HCV entry and also abrogated the cell-to-cell transmission of HCV. Collectively the results obtained with this new structural model of E2c suggest the development of small molecule inhibitors such as 281816 that target E2 and disrupt its interaction with CD81 may provide a new paradigm for HCV treatment.
- Published
- 2014
42. The present and future disease burden of hepatitis C virus (HCV) infection with today's treatment paradigm
- Author
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Altaf Alam, K. Saeed, N. Nugrahini, Fadi H. Mourad, Andri Sanityoso Sulaiman, Abdul Rahman Bizri, Jon G. Jonasson, Liana Gheorghe, S. Alawadhi, Ala I. Sharara, Sarah Blach, Rino Alvani Gani, Do Young Kim, M. Alzaabi, Young Seok Kim, Matti Maimets, S. Priohutomo, A. Löve, Saeed Hamid, Abdullah M. Assiri, H. Al Quraishi, Adel Alqutub, G. Tayyab, Junko Tanaka, H. Qureshi, A. Salamat, P. Aldins, M. S. Choi, M. T. Barakat, Reza Malekzadeh, M. Sadik, Kwang Hyub Han, Young-Suk Lim, J. Videčnik-Zorman, A. Abdou, Jacques E Mokhbat, Zaigham Abbas, Khalid Alswat, G. Sigmundsdottir, B. Karlsdottir, Marwa Sultan, K. Al Jaberi, Devin Razavi-Shearer, A. Al Rifai, Chris Estes, Abdullah S. Alghamdi, A. Sanityoso Sulaiman, Béla Hunyady, F. Al Braiki, B. Sigurdardottir, Ieva Tolmane, Kathryn Razavi-Shearer, S. El Khoury, Gabor Horvath, Y. Al Serkal, M. Taha, Hamad I. Al-Ashgar, Cesar Yaghi, Abdulrahman Aljumah, Danute Speiciene, Riina Salupere, Irsan Hasan, S. Fakhry, Homie Razavi, Evy Yunihastuti, F. Al Hosani, M. A. Al Mulla, Faisal M. Sanai, Mohamed A. Babatin, N. Andrea, L. Al-Dabal, S. Gregorcic, Arif Nawaz, R. Al-Hakeem, E. S. El Hassan, R. Husni, M. Siddiq, David H. Muljono, Adrian Goldis, A. Almessabi, Jonathan Schmelzer, Mojca Maticic, Laurentius A. Lesmana, A. Baqir, Ibrahim Altraif, Faisal Abaalkhail, Shahin Merat, Mihály Makara, A. Abourached, Jonas Valantinas, Asad Chaudhry, T. Diab, M. Ud Din, Muhammad S. Memon, Jessie Gunter, R. A. Sayegh, Seyed Moayed Alavian, A. M. Siddiqui, H. Fridjonsdottir, Bader Faiyaz Zuberi, M. Umar, Magnus Gottfredsson, Baiba Rozentale, Agita Jeruma, Samsuridjal Djauzi, Almoutaz Hashim, A. Ghafoor Khan, Ottar M. Bergmann, Z. Koutoubi, M. A. Yusuf, H. Tarifi, A. Sibley, Faleh Z. Al-Faleh, Wasim Jafri, P. Rassam, J. I. Farooqi, S. Olafsson, Behzad Hajarizadeh, Valentina Liakina, M. Al Khatry, Ctr Dis Anal, Natl Liver Inst, JW Goethe Univ Hosp, Univ Calgary, Ankara Univ, Hosp Santo Antonio Capuchos, Med Univ Innsbruck, Universidade de São Paulo (USP), Hop Henri Mondor, Adv Tech Hlth Serv Res TAISS, Ege Univ, Karolinska Inst, Karolinska Univ Hosp, Univ Leipzig, Osped Cantonale, Univ Montreal, Fed Univ State Rio de Janeiro, Arud Ctr Addict Med, Hosp Valle de Hebron, Hosp Puerta Hierro, Univ Fed Rio Grande do Sul, Odense Univ Hosp, Reg Hosp Hovedstaden, Universidade Federal do Rio de Janeiro (UFRJ), Univ Plymouth, Univ New S Wales, Cairo Univ, Orebro Univ Hosp, Univ Orebro, Ain Shams Univ, Dokuz Eylul Univ, Exigo Consultores, Universidade Federal de São Paulo (UNIFESP), Inst Clin & Expt Med, Hosp Carlos III, Univ Copenhagen, Direccao Geral Saude, Universidade Estadual de Campinas (UNICAMP), Wilhelminenspital Stadt Wien, Med Univ Vienna, Masaryk Univ, Univ Manitoba, Hlth Sci Ctr, European Liver Patients Assoc, Istanbul Univ, Univ British Columbia, Aalborg Univ Hosp, Katholieke Univ Leuven, Hosp Santa Maria, Univ Western Ontario, Univ Dusseldorf, Univ Libre Brussels, Univ Hosp, Natl Inst Publ Hlth, Univ Southhampton, Dalhousie Univ & Hepatol Serv, Assembleia Republ, Alfred Hosp, Monash Univ, UCL, Nottingham Univ Hosp NHS Trust, Biomed Res Unit, Ctr Hosp Porto, Cantonal Hosp St Gallen, Univ Toronto, Egyptian Liver Res Inst & Hosp, Monash Hlth, Catholic Univ Louvain, Med Univ Graz, St Vincents Hosp, Univ Melbourne, Charles Univ Prague, Cent Mil Hosp, Univ Antwerp, Deutsch Leberhilfe eV, Ghent Univ Hosp, Univ Ghent, Hannover Med Sch, Copenhagen Univ Hosp, Univ Zurich Hosp, Bihl, Florian, Negro, Francesco, and Semela, David
- Subjects
Pediatrics ,medicine.medical_specialty ,diagnosis ,Cost effectiveness ,Hepatitis C virus ,prevalence ,ddc:616.07 ,medicine.disease_cause ,disease burden ,Liver disease ,Virology ,Epidemiology ,medicine ,Disease burden ,ddc:616 ,treatment ,Hepatology ,business.industry ,Incidence (epidemiology) ,Hepatitis C ,medicine.disease ,mortality ,Infectious Diseases ,HCV ,Immunology ,incidence ,epidemiology ,Human medicine ,hepatitis C ,Viral hepatitis ,business - Abstract
Gilead Sciences The disease burden of hepatitis C virus (HCV) is expected to increase as the infected population ages. A modelling approach was used to estimate the total number of viremic infections, diagnosed, treated and new infections in 2013. in addition, the model was used to estimate the change in the total number of HCV infections, the disease progression and mortality in 2013-2030. Finally, expert panel consensus was used to capture current treatment practices in each country. Using today's treatment paradigm, the total number of HCV infections is projected to decline or remain flat in all countries studied. However, in the same time period, the number of individuals with late-stage liver disease is projected to increase. This study concluded that the current treatment rate and efficacy are not sufficient to manage the disease burden of HCV. Thus, alternative strategies are required to keep the number of HCV individuals with advanced liver disease and liver-related deaths from increasing. Ctr Dis Anal, Louisville, CO 80027 USA Natl Liver Inst, Menoufia, Egypt JW Goethe Univ Hosp, Frankfurt, Germany Univ Calgary, Liver Unit, Div Gastroenterol & Hepatol, Calgary, AB, Canada Ankara Univ, Dept Gastroenterol, Sch Med, TR-06100 Ankara, Turkey Hosp Santo Antonio Capuchos, Dept Gastroenterol, Ctr Hosp Lisboa Cent, Lisbon, Portugal Med Univ Innsbruck, A-6020 Innsbruck, Austria Univ São Paulo, Sch Med, São Paulo, Brazil Hop Henri Mondor, Serv Hepatogastroenterol, F-94010 Creteil, France Adv Tech Hlth Serv Res TAISS, Madrid, Spain Ege Univ, Izmir, Turkey Karolinska Inst, Dept Med Huddinge, Stockholm, Sweden Karolinska Univ Hosp, Dept Gastroenterol & Hepatol Infect Dis, Stockholm, Sweden Ankara Univ, TR-06100 Ankara, Turkey Univ Leipzig, D-04109 Leipzig, Germany Osped Cantonale, Dept Gastroenterol, Bellinzona, Switzerland Univ Montreal, Dept Med, Liver Unit, Montreal, PQ H3C 3J7, Canada Fed Univ State Rio de Janeiro, Dept Gastroenterol, Rio de Janeiro, Brazil Arud Ctr Addict Med, Zurich, Switzerland Hosp Valle de Hebron, CIBERehd, Barcelona, Spain Hosp Puerta Hierro, Madrid, Spain Univ Fed Rio Grande do Sul, Hosp Clin, Porto Alegre, RS, Brazil Odense Univ Hosp, Dept Infect Dis, DK-5000 Odense, Denmark Reg Hosp Hovedstaden, Copenhagen, Denmark Univ Fed Rio de Janeiro, Dept Clin Med, Rio de Janeiro, Brazil Univ Plymouth, Peninsula Sch Med & Dent, Plymouth PL4 8AA, Devon, England Univ New S Wales, Kirby Inst, Sydney, NSW, Australia Cairo Univ, Cairo, Egypt Orebro Univ Hosp, Dept Infect Dis, Orebro, Sweden Univ Orebro, Sch Hlth & Med Sci, SE-70182 Orebro, Sweden Ain Shams Univ, Cairo, Egypt Dokuz Eylul Univ, Izmir, Turkey Karolinska Inst, Karolinska Univ Hosp, Dept Med Huddinge, Infect Dis Unit, Stockholm, Sweden Exigo Consultores, Alhos Vedros, Portugal Universidade Federal de São Paulo, Div Gastroenterol, São Paulo, Brazil Universidade Federal de São Paulo, Div Infect Dis, São Paulo, Brazil Inst Clin & Expt Med, Dept Hepatogastroenterol, Prague, Czech Republic Hosp Carlos III, CIBERehd, Madrid, Spain Univ Copenhagen, Copenhagen, Denmark Direccao Geral Saude, Lisbon, Portugal Univ Estadual Campinas, Disciplina Doencas Infecciosas, Dept Clin Med, Grp Estudo Hepatites,Fac Ciencias Med,UNICAMP, São Paulo, Brazil Wilhelminenspital Stadt Wien, Dept Internal Med 4, Vienna, Austria Univ São Paulo, Sch Med, Div Gastroenterol & Hepatol, São Paulo, Brazil Med Univ Vienna, Div Gastroenterol & Hepatol, Dept Internal Med 3, Vienna, Austria Masaryk Univ, Univ Hosp Brno, Clin Infect Dis, Brno, Czech Republic Univ Manitoba, Dept Internal Med, Sect Hepatol, Winnipeg, MB, Canada Hlth Sci Ctr, Viral Hepatitis Invest Unit, Winnipeg, MB, Canada European Liver Patients Assoc, St Truiden, Belgium Istanbul Univ, Istanbul, Turkey Univ British Columbia, British Columbia Ctr Dis Control, Vancouver, BC V5Z 1M9, Canada Aalborg Univ Hosp, Dept Med Gastroenterol, Aalborg, Denmark Aalborg Univ Hosp, Sect Mol Diagnost, Aalborg, Denmark Katholieke Univ Leuven, Univ Hosp Leuven, Louvain, Belgium Hosp Santa Maria, Dept Gastroenterol, Ctr Hosp Lisboa Norte, Lisbon, Portugal Univ Western Ontario, Div Gastroenterol, London, ON, Canada Univ Dusseldorf, Dusseldorf, Germany Univ Libre Brussels, Erasme Univ Hosp, Brussels, Belgium Univ Hosp, Div Gastroenterol & Hepatol, Geneva, Switzerland Univ Hosp, Div Clin Pathol, Geneva, Switzerland Natl Inst Publ Hlth, Natl Reference Lab Hepatitis, Prague, Czech Republic Univ Southhampton, Southampton, England Dalhousie Univ & Hepatol Serv, Capital Dist Hlth Author, Queen Elizabeth II Hlth Sci Ctr, Dept Med, Halifax, NS, Canada Dalhousie Univ & Hepatol Serv, Capital Dist Hlth Author, Queen Elizabeth II Hlth Sci Ctr, Dept Surg, Halifax, NS, Canada Univ British Columbia, Dept Gastroenterol, Vancouver, BC V5Z 1M9, Canada Assembleia Republ, Lisbon, Portugal Alfred Hosp, Melbourne, Vic, Australia Monash Univ, Melbourne, Vic 3004, Australia UCL, Div Med, UCL Inst Liver & Digest Hlth, London, England Hop Henri Mondor, Dept Sante Publ, F-94010 Creteil, France Nottingham Univ Hosp NHS Trust, Nottingham, England Biomed Res Unit, Nottingham, England Ctr Hosp Porto, Dept Infect Dis, Oporto, Portugal Cantonal Hosp St Gallen, Div Gastroenterol & Hepatol, St Gallen, Switzerland Univ Toronto, Toronto Gen Hosp, Univ Hlth Network, Toronto, ON M5G 1L7, Canada Egyptian Liver Res Inst & Hosp, Dakahliah, Egypt Monash Hlth, Melbourne, Vic, Australia Catholic Univ Louvain, Clin Univ St Luc, Brussels, Belgium Med Univ Graz, Div Gastroenterol & Hepatol, Dept Internal Med, Graz, Austria St Vincents Hosp, Dept Gastroenterol, Melbourne, Vic, Australia Univ Melbourne, Melbourne, Vic, Australia Charles Univ Prague, Dept Internal Med, Fac Med 1, Prague, Czech Republic Cent Mil Hosp, Prague, Czech Republic Univ Antwerp, B-2020 Antwerp, Belgium Deutsch Leberhilfe eV, Cologne, Germany Ghent Univ Hosp, Ghent, Belgium Univ Ghent, Belgium Hasselt Univ, Dept Hlth Econ & Patient Safety, Diepenbeek, Belgium Hannover Med Sch, Dept Gastroenterol Hepatol & Endocrinol, Hannover, Germany Copenhagen Univ Hosp, Hvidovre, Denmark Univ New S Wales, St George Hosp Clin Sch Med, Sydney, NSW, Australia Univ New S Wales, Sch Med Sci, Sydney, NSW, Australia Univ Zurich Hosp, Swiss HPB Hepatopancreatobiliary Ctr, CH-8091 Zurich, Switzerland Univ Zurich Hosp, Dept Gastroenterol & Hepatol, CH-8091 Zurich, Switzerland Universidade Federal de São Paulo, Div Gastroenterol, São Paulo, Brazil Universidade Federal de São Paulo, Div Infect Dis, São Paulo, Brazil Web of Science
- Published
- 2014
- Full Text
- View/download PDF
43. Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2
- Author
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Aryan A. Price, Caitlin Bohannon, Jillian Whidby, Joshy Jacob, Abdul Ghafoor Khan, Joseph Marcotrigiano, Alicja M. Cygan, Hannah Scarborough, Arash Grakoui, Alexandra V. Zatorski, Samantha A. Yost, and Matthew T. Miller
- Subjects
Models, Molecular ,Viral Hepatitis Vaccines ,Protein Folding ,Surface Properties ,Hepatitis C virus ,Hepacivirus ,Biology ,medicine.disease_cause ,Crystallography, X-Ray ,Virus ,Article ,Immunoglobulin Fab Fragments ,Protein structure ,Viral envelope ,Viral Envelope Proteins ,Scattering, Small Angle ,medicine ,Disulfides ,Multidisciplinary ,Hydrogen-Ion Concentration ,Virus Internalization ,Virology ,Fusion protein ,3. Good health ,Protein Structure, Tertiary ,NS2-3 protease ,Ectodomain ,Immunoglobulin G ,Hydrophobic and Hydrophilic Interactions ,Viral Fusion Proteins ,CD81 - Abstract
The crystal structure of the core domain of the hepatitis C virus surface glycoprotein E2 has been solved; the structure shows that, contrary to expectation, E2 is unlikely to be the viral fusion protein. There is currently no vaccine against hepatitis C virus, so it is important to learn more about the processes by which the virus establishes infection. Joseph Marcotrigiano and colleagues solve the crystal structure of the core domain of the hepatitis C virus surface glycoprotein E2. The structure shows that, contrary to expectation, E2 is unlikely to be the viral fusion protein. This work helps to clarify the role of E2 and the mechanism of hepatitis C virus entry. Hepatitis C virus (HCV) is a significant public health concern with approximately 160 million people infected worldwide1. HCV infection often results in chronic hepatitis, liver cirrhosis and hepatocellular carcinoma. No vaccine is available and current therapies are effective against some, but not all, genotypes. HCV is an enveloped virus with two surface glycoproteins (E1 and E2). E2 binds to the host cell through interactions with scavenger receptor class B type I (SR-BI) and CD81, and serves as a target for neutralizing antibodies2,3,4. Little is known about the molecular mechanism that mediates cell entry and membrane fusion, although E2 is predicted to be a class II viral fusion protein. Here we describe the structure of the E2 core domain in complex with an antigen-binding fragment (Fab) at 2.4 A resolution. The E2 core has a compact, globular domain structure, consisting mostly of β-strands and random coil with two small α-helices. The strands are arranged in two, perpendicular sheets (A and B), which are held together by an extensive hydrophobic core and disulphide bonds. Sheet A has an IgG-like fold that is commonly found in viral and cellular proteins, whereas sheet B represents a novel fold. Solution-based studies demonstrate that the full-length E2 ectodomain has a similar globular architecture and does not undergo significant conformational or oligomeric rearrangements on exposure to low pH. Thus, the IgG-like fold is the only feature that E2 shares with class II membrane fusion proteins. These results provide unprecedented insights into HCV entry and will assist in developing an HCV vaccine and new inhibitors.
- Published
- 2013
44. Gluten-free diet: definition and applications
- Author
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Mohsin, Rashid and Aamir Ghafoor, Khan
- Subjects
Celiac Disease ,Diet, Gluten-Free ,Humans - Published
- 2012
45. Treatment of hepatitis C in 2011
- Author
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Roger, Williams and Aamir Ghafoor, Khan
- Subjects
Clinical Trials as Topic ,Genotype ,Proline ,Ribavirin ,Humans ,Pakistan ,Documentation ,Interferons ,Hepatitis C, Chronic ,Viral Load ,Antiviral Agents ,Oligopeptides - Abstract
New knowledge on the treatment of Hepatitis C is accruing at an extraordinarily rapid rate and my aim in this editorial based on a talk I gave at the Pakistan Society of Gastroenterology Annual International Congress this year, is to outline how patients may be treated both currently and over the next two to three years.
- Published
- 2012
46. Celiac disease in Pakistan: challenges and opportunities
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Mohsin, Rashid and Aamir Ghafoor, Khan
- Subjects
Celiac Disease ,Diet, Gluten-Free ,Humans ,Pakistan - Published
- 2010
47. Irritable bowel syndrome: recent progress in pathophysiology, diagnosis and management?
- Author
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Eamonn M M, Quigley and Aamir Ghafoor, Khan
- Subjects
Irritable Bowel Syndrome ,Male ,Sex Factors ,Humans ,Female - Published
- 2010
48. Human Rhinovirus 14 Enters Rhabdomyosarcoma Cells Expressing ICAM-1 by a Clathrin-, Caveolin-, and Flotillin-Independent Pathway ▿
- Author
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Thomas C. Marlovits, Angela Pickl-Herk, Abdul Ghafoor Khan, Leszek Gajdzik, Dieter Blaas, and Renate Fuchs
- Subjects
Cytochalasin D ,Rhinovirus ,Immunology ,Integrin ,Microbiology ,Clathrin ,Caveolins ,Amiloride ,chemistry.chemical_compound ,Viral entry ,Virology ,Caveolae ,Cell Line, Tumor ,Caveolin ,Humans ,Cytochalasin ,ICAM-1 ,Muscle Cells ,Microscopy, Confocal ,biology ,Membrane Proteins ,Virus Internalization ,Intercellular Adhesion Molecule-1 ,Cell biology ,Virus-Cell Interactions ,Microscopy, Electron ,chemistry ,Microscopy, Fluorescence ,Insect Science ,biology.protein ,Sodium Channel Blockers - Abstract
Intercellular adhesion molecule 1 (ICAM-1) mediates binding and entry of major group human rhinoviruses (HRVs). Whereas the entry pathway of minor group HRVs has been studied in detail and is comparatively well understood, the pathway taken by major group HRVs is largely unknown. Use of immunofluorescence microscopy, colocalization with specific endocytic markers, dominant negative mutants, and pharmacological inhibitors allowed us to demonstrate that the major group virus HRV14 enters rhabdomyosarcoma cells transfected to express human ICAM-1 in a clathrin-, caveolin-, and flotillin-independent manner. Electron microscopy revealed that many virions accumulated in long tubular structures, easily distinguishable from clathrin-coated pits and caveolae. Virus entry was strongly sensitive to the Na+/H+ion exchange inhibitor amiloride and moderately sensitive to cytochalasin D. Thus, cellular uptake of HRV14 occurs via a pathway exhibiting some, but not all, characteristics of macropinocytosis and is similar to that recently described for adenovirus 3 entry via αvintegrin/CD46 in HeLa cells.
- Published
- 2010
49. Low pH-triggered beta-propeller switch of the low-density lipoprotein receptor assists rhinovirus infection
- Author
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Dieter Blaas, Abdul Ghafoor Khan, Gerhard Bilek, Leszek Gajdzig, Angela Pickl-Herk, Ursula Berka, Tuende Konecsni, and Renate Fuchs
- Subjects
Low-density lipoprotein receptor gene family ,Rhinovirus ,Endosome ,media_common.quotation_subject ,Immunology ,Mutant ,Virus Attachment ,CHO Cells ,Biology ,Microbiology ,Protein Structure, Secondary ,Cricetulus ,Virology ,Cricetinae ,Animals ,Humans ,cardiovascular diseases ,Internalization ,Receptor ,media_common ,Picornaviridae Infections ,Chinese hamster ovary cell ,food and beverages ,nutritional and metabolic diseases ,Transfection ,Hydrogen-Ion Concentration ,Virus Internalization ,Cell biology ,Virus-Cell Interactions ,Lipoproteins, LDL ,Biochemistry ,Receptors, LDL ,Insect Science ,LDL receptor ,Mutation ,RNA, Viral ,lipids (amino acids, peptides, and proteins) ,Lysosomes ,HeLa Cells - Abstract
Minor group human rhinoviruses (HRVs) bind three members of the low-density lipoprotein receptor (LDLR) family: LDLR proper, very-LDLR (VLDLR) and LDLR-related protein (LRP). Whereas ICAM-1, the receptor of major group HRVs actively contributes to viral uncoating, LDLRs are rather considered passive vehicles for cargo delivery to the low-pH environment of endosomes. Since the Tyr-Trp-Thr-Asp β-propeller domain of LDLR has been shown to be involved in the dissociation of bound LDL via intramolecular competition at low pH, we studied whether it also plays a role in HRV infection. Human cell lines deficient in LDLR family proteins are not available. Therefore, we used CHO -ldla7 cells that lack endogenous LDLR. These were stably transfected to express either wild-type (wt) human LDLR or a mutant with a deletion of the β-propeller. When HRV2 was attached to the propeller-negative LDLR, a lower pH was required for conversion to subviral particles than when attached to wt LDLR. This indicates that high-avidity receptor binding maintains the virus in its native conformation. HRV2 internalization directed the mutant LDLR but not wt LDLR to lysosomes, resulting in reduced plasma membrane expression of propeller-negative LDLR. Infection assays using a CHO-adapted HRV2 variant showed a delay in intracellular viral conversion and de novo viral synthesis in cells expressing the truncated LDLR. Our data indicate that the β-propeller attenuates the virus-stabilizing effect of LDLR binding and thereby facilitates RNA release from endosomes, resulting in the enhancement of infection. This is a nice example of a virus exploiting high-avidity multimodule receptor binding with an intrinsic release mechanism.
- Published
- 2009
50. Predictive bioinformatic identification of minor receptor group human rhinoviruses
- Author
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Angela Pickl-Herk, Sascha Strauss, Dieter Blaas, Christoph Weber, Abdul Ghafoor Khan, and Oliviero Carugo
- Subjects
Models, Molecular ,Rhinovirus ,Bioinformatics ,In silico ,Lysine ,Molecular Sequence Data ,Biophysics ,Virus Attachment ,Biology ,medicine.disease_cause ,Biochemistry ,Epitope ,03 medical and health sciences ,stomatognathic system ,Structural Biology ,Genetics ,medicine ,Humans ,Amino Acid Sequence ,Receptor ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,030302 biochemistry & molecular biology ,virus diseases ,Computational Biology ,Cell Biology ,respiratory system ,Affinities ,LDL-receptor ,Energy calculation ,Capsid ,Affinity ,Receptors, LDL ,LDL receptor ,Capsid Proteins ,Molecular modelling ,Software ,Protein Binding - Abstract
Major group HRVs bind intercellular adhesion molecule 1 and minor group HRVs bind members of the low-density lipoprotein receptor (LDLR) family for cell entry. Whereas the former share common sequence motives in their viral capsid proteins (VPs), in the latter only a lysine residue within the binding epitope in VP1 is conserved; this lysine is also present in “K-type” major group HRVs that fail to use LDLR for infection. By using the available sequences three-dimensional models of VP1 of all HRVs were built and binding energies, with respect to module 3 of the very-low-density lipoprotein receptor, were calculated. Based on the predicted affinities K-type HRVs and minor group HRVs were correctly classified.
- Published
- 2009
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