251. The genetic diversity and phenotypic associations of feline caliciviruses from cats in Switzerland
- Author
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Valentino Cattori, Marina L. Meli, Regina Hofmann-Lehmann, Andrea M. Spiri, Oliver G. Pybus, Barbara Willi, Adolf Steinrigl, Alice Berger, Julien Thézé, University of Oxford [Oxford], University of Zurich, and Willi, Barbara
- Subjects
0301 basic medicine ,10253 Department of Small Animals ,Capsid (VP1) gene ,viruses ,[SDV]Life Sciences [q-bio] ,Hypervariable region E ,Biology ,Cat Diseases ,Pedigree cat ,03 medical and health sciences ,Phylogenetics ,Molecular evolution ,Virology ,Genetic variation ,Animals ,11434 Center for Clinical Studies ,Feline calicivirus ,Gene ,Phylogeny ,Phylogenetic analyses ,Caliciviridae Infections ,Genetics ,Genetic diversity ,Trait correlation ,630 Agriculture ,Genetic Variation ,biology.organism_classification ,3. Good health ,030104 developmental biology ,Phenotype ,Genetic distance ,Capsid ,11404 Department of Clinical Diagnostics and Services ,2406 Virology ,Cats ,570 Life sciences ,biology ,Capsid Proteins ,Switzerland ,Calicivirus, Feline - Abstract
International audience; Feline calicivirus (FCV) is a common viral pathogen in domestic cats worldwide. The variable regions of the capsid (VP1) gene of FCV have one of the highest recorded rates of molecular evolution. Understanding the genetic diversity and phylogeny of FCV is a prerequisite to exploring the epidemiology and pathogenesis of this virus and to the development of efficacious vaccine strategies. In this study, we undertook a nationwide molecular characterization of FCV using for the first time nearly complete capsid (VP1) gene sequences. Sequences from 66 FCV samples were used to investigate the correlation between viral phylogeny and several traits, including geographic origin, signalment, husbandry, FCV vaccination and co-infections. Codon-based nucleotide alignment showed that individual nucleotides and their corresponding amino acid sites were either invariant or highly variable. Using a threshold of 20 % genetic distance in variable region E, FCV samples were grouped into 52 strains, 10 of which comprised two to three samples. Significant associations between FCV phylogeny and host characteristics were found, specifically the pedigree status of the cats, and two well-supported lineages were identified in which the current FCV strain definition was confounded. No correlation between viral genetic distances and geographic distances was evident. The greater resolution of the FCV phylogeny in this study compared to previous studies can be attributed to our use of more conserved regions of the capsid (VP1) gene; nonetheless, our results were still hampered by sequence saturation. The study highlights the need for whole-genome sequences for FCV phylogeny studies.
- Published
- 2016