439 results on '"Faria, N"'
Search Results
202. Transmission of FastH2+through Thin Foils
- Author
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Cue, N., primary, de Castro-Faria, N. V., additional, Gaillard, M. J., additional, Poizat, J. -C., additional, Remillieux, J., additional, Gemmell, D. S., additional, and Plesser, I., additional
- Published
- 1980
- Full Text
- View/download PDF
203. Anisotropy of PbL3-subshell x rays excited by low-velocity-proton impact
- Author
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Barros Leite, C. V., primary, de Castro Faria, N. V., additional, Horowicz, R. J., additional, Montenegro, E. C., additional, and de Pinho, A. G., additional
- Published
- 1982
- Full Text
- View/download PDF
204. Isotopic effects in the production of neutrals and negative ions from the foil break-up of H2+, HD+ and D2+
- Author
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Faria, N V de Castro, primary, Freire Jr, F L, additional, Montenegro, E C, additional, and Pinho, A D de, additional
- Published
- 1987
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- View/download PDF
205. Electron-impact ionization and energy loss of 27-MeV/uXe35+incident ions channeled in silicon
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Andriamonje, S., primary, Anne, R., additional, de Castro Faria, N. V., additional, Chevallier, M., additional, Cohen, C., additional, Dural, J., additional, Gaillard, M. J., additional, Genre, R., additional, Hage-Ali, M., additional, Kirsch, R., additional, L’Hoir, A., additional, Farizon-Mazuy, B., additional, Mory, J., additional, Moulin, J., additional, Poizat, J. C., additional, Quéré, Y., additional, Remillieux, J., additional, Schmaus, D., additional, and Toulemonde, M., additional
- Published
- 1989
- Full Text
- View/download PDF
206. Effects of intracisternal glucose or insulin injections on glucose homeostasis in cat
- Author
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Alvarez-Buylla, R., primary, Rojas, M., additional, de Alvarez-Buylla, E. R., additional, and Faria, N., additional
- Published
- 1986
- Full Text
- View/download PDF
207. Electron loss and capture by fast helium ions in noble gases
- Author
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de Castro Faria, N. V., primary, Freire, F. L., additional, and de Pinho, A. G., additional
- Published
- 1988
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- View/download PDF
208. Equilibrium negative-charge fractions in swift proton beams emerging from freshly evaporated metal films
- Author
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Almeida, D. P., primary, de Castro Faria, N. V., additional, Freire, F. L., additional, Kirsch, R., additional, and de Pinho, A. G., additional
- Published
- 1988
- Full Text
- View/download PDF
209. L-subshell ionization of Au, Tl, Pb, Bi, Th, and U by protons
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Leite, C. V. Barros, primary, Faria, N. V. de Castro, additional, and de Pinho, A. G., additional
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- 1977
- Full Text
- View/download PDF
210. Collisional formation and destruction of fast negative hydrogen ions in He, Ne, and Ar targets
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Almeida, D. P., primary, de Castro Faria, N. V., additional, Freire, F. L., additional, Montenegro, E. C., additional, and de Pinho, A. G., additional
- Published
- 1987
- Full Text
- View/download PDF
211. Inhibition ofH−production in the foil breakup of fastH2+
- Author
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Cue, N., primary, Faria, N. V. de Castro, additional, Gaillard, M. J., additional, Poizat, J. C., additional, and Remillieux, J., additional
- Published
- 1980
- Full Text
- View/download PDF
212. K-shell ionisation cross sections for W, Au and U by low-velocity protons
- Author
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Faria, N V de Castro, primary, Freire, F L, additional, Montenegro, E C, additional, Pinho, A G de, additional, and Silveria, E F da, additional
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- 1984
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- View/download PDF
213. Erratum: Au, Pb, Bi, and UM-subshell ionization by protons
- Author
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de Castro Faria, N. V., primary, Freire, F. L., additional, de Pinho, A. G., additional, and da Silveira, E. F., additional
- Published
- 1984
- Full Text
- View/download PDF
214. O que escapa à relação fonema-grafema na aquisição da escrita
- Author
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Faria, Núbia Rabelo Bakker
- Subjects
escrita - aprendizagem ,Philology. Linguistics ,P1-1091 ,Literature (General) ,PN1-6790 - Published
- 1998
215. EPIDEMIOLOGY OF SUICIDES IN RIO GRANDE DO SUL.
- Author
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Meneghel, S., Victora, C., Faria, N., Carvalho, L., and Falk, J.
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SUICIDE ,HEALTH risk assessment ,HEALTH promotion ,PUBLIC health research - Abstract
The article profiles the issue of suicide in the state of Rio Grande do Sul. Rio Grande do Sul evidenced the highest rates for suicide in Brazil during the period under study. The standardized coefficients went from levels around 9/100000 in the 1980s to 11/100000 in 1999. The study points to suicide as a collective health problem in Rio Grande do Sul and reveals characteristics that could contribute to preventative action. The monitoring of violent events in the community is one of the strategies in health promotion and allows the identification of potential factors for early intervention.
- Published
- 2004
216. New experiment for coincidence detection of H(2l)+H(2l') coming from dissociation of H2 induced by electron impact.
- Author
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Nascimento, R F, Medina, Aline, Carvalho, C R, Carval, C, Santos, L O, Jalbert, Ginette, Zappa, F, Faria, N V de Castro, and Robert, J
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- 2014
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217. Identification of TEM-10 beta-lactamase in a Kluyvera sp. and other Enterobacteriaceae at a Portuguese hospital.
- Author
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Duarte, A, Faria, N, Conceição, T, Correia, M, Lito, L M, Cristino, J Melo, Salgado, M J, and Tenreiro, R
- Published
- 2002
218. Identification of TEM-10 β-Lactamase in a Kluyverasp. and Other Enterobacteriaceaeat a Portuguese Hospital
- Author
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Duarte, A., Faria, N., Conceição, T., Correia, M., Lito, L. M., Cristino, J. Melo, Salgado, M. J., and Tenreiro, R.
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- 2002
- Full Text
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219. New chromosomal AmpC beta-lactamase in Enterobacter cloacae.
- Author
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Conceição, T, Faria, N, Pimentel, M, Soveral, G, Duarte, A, Lito, L M, Melo Cristino, J, and Salgado, M J
- Published
- 2004
220. Characterizing the endemicity and disease burden of chikungunya virus infections among children in coastal Kenya
- Author
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Nyamwaya, D, Bejon, P, Lambe, T, Faria, N, Warimwe, G, and Mwangi, T
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Public health ,Molecular epidemiology ,Clinical medicine ,Virology--Research - Abstract
Chikungunya fever (CHIKF) is a viral illness of significant public health concern characterised by acute, often chronic, debilitating joint pain and polyarthritis. CHIKF is caused by the mosquito-borne chikungunya virus (CHIKV) that was first discovered in Tanzania in 1952. CHIKV re-emerged in coastal Kenya in 2004 causing the largest CHIKF epidemic on record. The epidemic affected millions of people, with rapid geographic spread to other countries in Africa, India, southeast Asia and Europe. Descriptions of this and other more recent epidemics outside Africa have informed most of what we know about CHIKF. However, very little is known regarding the burden, distribution, risk factors and clinical manifestation of CHIKV infections in Africa especially among the paediatric population. In this DPhil project I aimed to estimate the burden of CHIKF among children in coastal Kenya over a five-year period, 2014-2018. First, this thesis presents a comprehensive review of available literature on CHIKF, CHIKV and epidemiology (Chapter 1) and a report on the methods used (Chapter 2). It then describes a systematic literature review and meta-analysis of data on childhood CHIKV infections published between 1983-2021 (Chapter 3). I show that CHIKF is a significantly under-recognised and underreported health problem among children globally, with infants under 1 year of age being at highest risk of severe disease. To determine the prevalence and incidence of CHIKV infections among children in coastal Kenya, I used RT-PCR to test: i) children presenting with fever at two primary health facilities in Kilifi county (described in Chapter 4), ii) children admitted with neurological illness at the referral Kilifi County Hospital (KCH; Chapter 5), iii) newborns at the KCH maternity ward (Chapter 6). During the five-year study period, I found that CHIKF was endemic in coastal Kenya, associated with 12.7% (95% CI 11.6, 13.8) of all febrile presentations at the primary healthcare facilities, and accounted for 9.2% (95% CI 8.3, 10.2) of children admitted with neurological illness. A community survey of 435 asymptomatic children in the same study location estimated a prevalence of 0.7% (95% CI 0.2, 2.1) asymptomatic CHIKV infections in 2016 (a year when a CHIKF epidemic was reported in the country). CHIKF incidence was highest in young children and infants, implying acquisition of immunity. However, recurrent CHIKF episodes, associated with fever and viraemia, were observed among 19 of 170 children with multiple febrile episodes during the study period, suggesting imperfect immunity. This is the first time that recurrent CHIKV infections have been observed. Among children aged
- Published
- 2023
221. Experimental Evidence of Twin Fast Metastable H(2²S) Atoms from Dissociation of Cold H2 Induced by Electrons.
- Author
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Robert, J., Zappa, F., de Carvalho, C. R., Jalbert, Ginette, Nascimento, R. F., Trimeche, A., Dulieu, O., Medina, Aline, Carvalho, Carla, and de Castro Faria, N. V.
- Subjects
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METASTABLE states , *ELECTRON research , *COLLISION induced dissociation , *MOLECULAR dissociation , *RADIATIVE transitions - Abstract
We report the direct detection of two metastable H(22S) atoms coming from the dissociation of a single cold H2 molecule, in coincidence measurements. The molecular dissociation was induced by electron impact in order to avoid limitations by the selection rules governing radiative transitions. Two detectors, placed close to the collision center, measure the neutral metastable H(22S) through a localized quenching process, which mixes the H(22S) state with the H(22P), leading to a Lyman-a detection. Our data show the accomplishment of a coincidence measurement which proves for the first time the existence of the H(22S)-H(22S) dissociation channel. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
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222. Extracellular vesicles are independent metabolic units with asparaginase activity
- Author
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Carlos Bastos, Tommaso Leonardi, Ana S. H. Costa, Nunzio Iraci, Maurizio Gelati, Joshua D. Bernstock, Stefano Pluchino, Chiara Cossetti, Harpreet K Saini, Edoardo Gaude, Anton J. Enright, Nuno Faria, Luigi Occhipinti, Angelo L. Vescovi, Christian Frezza, Luca Peruzzotti-Jametti, Iraci, N, Gaude, E, Leonardi, T, Costa, A, Cossetti, C, Peruzzotti Jametti, L, Bernstock, J, Saini, H, Gelati, M, Vescovi, A, Bastos, C, Faria, N, Occhipinti, L, Enright, A, Frezza, C, Pluchino, S, Iraci, Nunzio [0000-0003-2146-9329], Peruzzotti-Jametti, Luca [0000-0002-9396-5607], Bernstock, Joshua D [0000-0002-7814-3867], Frezza, Christian [0000-0002-3293-7397], and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,Extracellular Vesicle ,Chemistry ,Cell Biology ,Metabolism ,Bioinformatics ,Models, Biological ,Glutaminase activity ,3. Good health ,Cell biology ,Extracellular Vesicles ,03 medical and health sciences ,030104 developmental biology ,Metabolomics ,Enzyme ,Asparaginase ,Asparagine ,Stem cell ,Progenitor cell ,Molecular Biology ,health care economics and organizations ,Function (biology) - Abstract
Extracellular vesicles (EVs) are membrane particles involved in the exchange of a broad range of bioactive molecules between cells and the microenvironment. Although it has been shown that cells can traffic metabolic enzymes via EVs, much remains to be elucidated with regard to their intrinsic metabolic activity. Accordingly, herein we assessed the ability of neural stem/progenitor cell (NSC)-derived EVs to consume and produce metabolites. Our metabolomics and functional analyses both revealed that EVs harbor L-asparaginase activity, catalyzed by the enzyme asparaginase-like protein 1 (Asrgl1). Critically, we show that Asrgl1 activity is selective for asparagine and is devoid of glutaminase activity. We found that mouse and human NSC EVs traffic Asrgl1. Our results demonstrate, for the first time, that NSC EVs function as independent metabolic units that are able to modify the concentrations of critical nutrients, with the potential to affect the physiology of their microenvironment.
- Published
- 2017
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223. Using molecular epidemiology to investigate HIV transmission and prevention efforts
- Author
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Vasylyeva, T, Faria, N, and Pybus, O
- Subjects
Molecular epidemiology - Abstract
The Human Immunodeficiency Virus (HIV) is a retrovirus that causes HIV infection and, if untreated, leads to Acquired Immunodeficiency Syndrome (AIDS) and death. An estimated 36.7 million people in the world are HIV-infected; around 10% of them live in Europe. In this thesis I use molecular epidemiology in combination with mathematical modelling and traditional epidemiological analysis to describe HIV transmission dynamics and to assess various HIV prevention strategies, which might help to inform public health decisions. I start by characterizing the explosive HIV growth in people who inject drugs (PWID) in Russia and Ukraine in the 1990s in Chapter 2. I chose those settings as a model system in which to study HIV transmission in PWID in the absence of prevention. I then use my estimates to build a mathematical model that can be used to evaluate preventive measures during HIV outbreaks in PWID. In Chapter 3 I analyse newly-generated HIV-1 subtype A genetic sequences from Ukraine and apply a novel method to show how HIV spread among Ukrainian regions shifted after the initiation of war on the country’s eastern borders. I show that, since 2014, HIV is moving westwards, carried by large-scale human migration. In Chapter 4 I created the largest Ukrainian subtype B (the second most prevalent HIV-1 subtype in Ukraine) dataset to date, and show how the virus distribution changed in the country over the last 15 years. I then simulated phylogenies under scenarios similar to the Ukrainian subtype A and subtype B epidemics, to study the performance of various phylodynamic models that are used to estimate changes in HIV population size and transmission dynamics from virus gene sequences. Finally, Chapter 5 describes the molecular epidemiological profiles of the two most prevalent HIV-1 subtypes in Portugal, subtypes B and G. I use novel phylodynamic approaches to trace and compare the effect of various public health interventions on the transmission dynamics of these subtypes, given their different transmission group composition.
- Published
- 2019
224. Electron-detachment cross section for CN- and 0-2 incident on N2 at intermediate velocities.
- Author
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Jalbert, Ginette, Nascimento, R. F., de Carvalho, Carlos R., Carvalho, Carla R., Magnani, B. F., Santos, A. C. F, Rocha, A. B., Sant'Anna, M. M., and de Castro Faria, N. V.
- Subjects
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ELECTRON scattering , *COLLISIONS (Nuclear physics) , *TANDEM accelerators , *GAS chambers , *RESONANCE , *DATA analysis - Abstract
The electron-detachment cross section was measured for the molecular negative ions CN- and O-2 incident on N2, in the 0.08-1.2 a.u. velocity region. Our setup uses the gas stripper of a tandem accelerator as a gas chamber. All cross sections present a maximum near 0.4 a.u., a velocity corresponding to the well-known shape-resonance that appears in the electron-N2 collisions. A semiclassical model is employed to analyze the data. The role of this shape resonance is discussed in this article. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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225. Production of neutral fragments from the dissociation of fast H[sub 3][sup +] ions
- Author
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de Castro Faria, N [Departamento de Fisica, Pontificia Universidade Catolica do Rio de Janeiro, Caixa Postal 38071, Rio de Janeiro, 22453, RJ (Brazil)]
- Published
- 1993
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226. Total detachment cross sections of C-, CH- , C2-, and C2H- incident on N2 at keV energies.
- Author
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Nascimento, R. F., Mello, S. L. A., Magnani, B. F., Sant'Anna, M. M., Jalbert, Ginette, and de Castro Faria, N. V.
- Subjects
- *
ANIONS , *NITROGEN , *PROJECTILES , *ATOM-atom collisions , *ELECTRON scattering - Abstract
We have measured the total electron detachment cross sections of the negative ions C-, CH-, C2-, and C2H- incident on molecular nitrogen in the velocity range 0.22-0.56 a.u. The data were measured with reliable normalization and, particularly in the critical case of the C- projectile, the absence of beam contamination due to long-lived metastable states. Comparison of all measurements of cross sections with experimental data for other projectiles shows a common velocity dependence with a maximum near 0.4 a.u. This behavior suggests a connection between the anion-N2 electron-loss collision dynamics and that of the shape-resonance process dominant in low-velocity electron-N2 total electron scattering. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
227. H sup minus formation from collisional destruction of fast H sub 3 sup + ions in noble gases
- Author
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de Castro Faria, N [Departamento de Fisica, Pontificia Universidade Catolica do Rio de Janiero, Caixa Postal 38071, Rio de Janeiro 22453, Rio de Janeiro (Brazil)]
- Published
- 1992
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228. Collisional destruction of fast H sub 3 sup + ions in noble gases
- Author
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de Castro Faria, N [Departamento de Fisica, Pontificia Universidade Catolica do Rio de Janeiro, Caixa Postal 38071, 22453 Rio de Janeiro, Rio de Janeiro (Brazil)]
- Published
- 1992
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229. Genetic evidence of Zika virus in mother's breast milk and body fluids of a newborn with severe congenital defects.
- Author
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Giovanetti, M., Goes de Jesus, J., Junior, J.X., Castro Amarante, M.F., Viana, P., Khouri Barreto, F., Santos Amorim, L., de Siqueira, I.C., Júnior Alcântara, L.C., Lima de Maia, M., de Cerqueira, E.M., Pedreira Santos, N., Barreto Falcão, M., Machado Costa, M.C., Andrade de Melo, A.L., Macarenhas, D.L., Barros Faiçal, A.V., Xavier Acosta, A., Bispo de Filippis, A.M., and Rodrigues Faria, N.
- Subjects
- *
PUBLIC health , *NEWBORN infants , *NEUROLOGICAL disorders , *ZIKA virus infections - Abstract
The article discusses the public health emergency of national concern declared by the Brazilian Ministry of Health looking at the rising number of neurologic disorders in newborns in the country. It also discusses the potential connection between the Zika virus infection with that of the neurologic disorders like microcephaly and the public health emergency of international concern declared by the organization World Health Organization in February 2016.
- Published
- 2018
- Full Text
- View/download PDF
230. Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings.
- Author
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Kraemer, M. U. G., Golding, N., Bisanzio, D., Bhatt, S., Pigott, D. M., Ray, S. E., Brady, O. J., Brownstein, J. S., Faria, N. R., Cummings, D. A. T., Pybus, O. G., Smith, D. L., Tatem, A. J., Hay, S. I., and Reiner, R. C.
- Abstract
Human mobility is an important driver of geographic spread of infectious pathogens. Detailed information about human movements during outbreaks are, however, difficult to obtain and may not be available during future epidemics. The Ebola virus disease (EVD) outbreak in West Africa between 2014–16 demonstrated how quickly pathogens can spread to large urban centers following one cross-species transmission event. Here we describe a flexible transmission model to test the utility of generalised human movement models in estimating EVD cases and spatial spread over the course of the outbreak. A transmission model that includes a general model of human mobility significantly improves prediction of EVD's incidence compared to models without this component. Human movement plays an important role not only to ignite the epidemic in locations previously disease free, but over the course of the entire epidemic. We also demonstrate important differences between countries in population mixing and the improved prediction attributable to movement metrics. Given their relative rareness, locally derived mobility data are unlikely to exist in advance of future epidemics or pandemics. Our findings show that transmission patterns derived from general human movement models can improve forecasts of spatio-temporal transmission patterns in places where local mobility data is unavailable. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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- View/download PDF
231. The dynamic changes of dominant clones of Staphylococcus aureus causing bloodstream infections in the European region: Results of a second structured survey
- Author
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Grundmann, H, Schouls, L M, Aanensen, D M, Pluister, G N, Tami, A, Chlebowicz, M, Glasner, C, Sabat, A J, Weist, K, Heuer, O, Friedrich, A W, ESCMID Study Group on Molecular Epidemiological Markers, European Staphylococcal Reference Laboratory Working Group, Perez-Vazquez, Maria, Unión Europea. European Centre for Disease Prevention and Control (ECDC), ESCMID Study Group on Molecular Epidemiological Markers, European Staphylococcal Reference Laboratory Working Group, Denis, O., Nashev, D., Blanc, D.S., Pieridou-Bagatzouni, D., Jakubu, V., Zemlickova, H., Westh, H., Larsen, A.R., Skov, R., Laurent, F., Layer, F., Witte, W., Spiliopoulou, I., Salmenlinna, S., Lindholm, L., Vuopio-Varkila, J., Toth, A., Ungvari, E., Brennan, G., Shore, A., Miklasevics, E., Balode, A., Haraldsson, G., Kristinsson, K.G., Monaco, M., Pantosti, A., Borg, M., Huijsdens, X., Heck, M., Marstein, L., Jacobsen, T., Gran, F., Faria, N., de Lencastre, H., Empel, J., Kozińska, A., Hryniewicz, W., Codita, I., Perez-Vazquez, M., Vindel, A., Švent Kučina, N., Haeggman, S., Liljequist, B.O., Pichon, B., Kearns, A., Edwards, G., and Microbes in Health and Disease (MHD)
- Subjects
Male ,Methicillin-Resistant Staphylococcus aureus ,Staphylococcus aureus ,medicine.medical_specialty ,Genotype ,Epidemiology ,Human pathogen ,Microbial Sensitivity Tests ,medicine.disease_cause ,Microbiology ,EMERGENCE ,Virology ,medicine ,Humans ,Typing ,Staphylococcal Protein A ,Anti-Bacterial Agents/pharmacology ,Bacterial Typing Techniques ,Data Collection ,Europe ,Female ,Genetic Variation ,Molecular Epidemiology ,Multilocus Sequence Typing ,Staphylococcal Infections/blood ,Staphylococcal Infections/epidemiology ,Staphylococcal Infections/microbiology ,Staphylococcal Protein A/genetics ,Staphylococcus aureus/classification ,Staphylococcus aureus/drug effects ,Staphylococcus aureus/genetics ,Staphylococcus aureus/isolation & purification ,Molecular epidemiology ,business.industry ,Public Health, Environmental and Occupational Health ,Staphylococcal Infections ,Methicillin-resistant Staphylococcus aureus ,Anti-Bacterial Agents ,Multilocus sequence typing ,SPREAD ,business - Abstract
Staphylococcus aureus is one of the most important human pathogens and meticillin-resistant S. aureus (MRSA) presents a major cause of healthcare- and community-acquired infections. This study investigated the spatial and temporal changes of S. aureus causing bacteraemia in Europe over a five-year interval and explored the possibility of integrating pathogen-based typing data with epidemiological and clinical information at a European level. Between January 2011 and July 2011, 350 laboratories serving 453 hospitals in 25 countries collected 3,753 isolates (meticillin-sensitive S. aureus (MSSA) and MRSA) from patients with S. aureus bloodstream infections. All isolates were sent to the national staphylococcal reference laboratories and characterised by quality-controlled spa typing. Data were uploaded to an interactive web-based mapping tool. A wide geographical distribution of spa types was found, with some prevalent in all European countries. MSSA was more diverse than MRSA. MRSA differed considerably between countries with major international clones expanding or receding when compared to a 2006 survey. We provide evidence that a network approach of decentralised typing and visualisation of aggregated data using an interactive mapping tool can provide important information on the dynamics of S. aureus populations such as early signalling of emerging strains, cross-border spread and importation by travel. The study was funded by ECDC through tender and frame-work contract ECDC 09/033. Sí
- Published
- 2014
- Full Text
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232. Heterologous production of resveratrol in bacterial hosts: current status and perspectives.
- Author
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Braga, A., Ferreira, P., Oliveira, J., Rocha, I., and Faria, N.
- Subjects
- *
LACTOCOCCUS lactis , *BIOSYNTHESIS , *POLYPHENOLS , *RESVERATROL , *MALONYL-coenzyme A , *CORYNEBACTERIUM - Abstract
The polyphenol resveratrol (3,5,4′-trihydroxystilbene) is a well-known plant secondary metabolite, commonly used as a medical ingredient and a nutritional supplement. Due to its health-promoting properties, the demand for resveratrol is expected to continue growing. This stilbene can be found in different plants, including grapes, berries (blackberries, blueberries and raspberries), peanuts and their derived food products, such as wine and juice. The commercially available resveratrol is usually extracted from plants, however this procedure has several drawbacks such as low concentration of the product of interest, seasonal variation, risk of plant diseases and product stability. Alternative production processes are being developed to enable the biotechnological production of resveratrol by genetically engineering several microbial hosts, such as Escherichia coli, Corynebacterium glutamicum, Lactococcus lactis, among others. However, these bacterial species are not able to naturally synthetize resveratrol and therefore genetic modifications have been performed. The application of emerging metabolic engineering offers new possibilities for strain and process optimization. This mini-review will discuss the recent progress on resveratrol biosynthesis in engineered bacteria, with a special focus on the metabolic engineering modifications, as well as the optimization of the production process. These strategies offer new tools to overcome the limitations and challenges for microbial production of resveratrol in industry. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
233. Impact of the Ninth International Association for the Study of Lung Cancer TNM Classification on Endobronchial Ultrasound for Lung Cancer Staging.
- Author
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Faria N, Costa MI, Lacerda C, and Sucena M
- Subjects
- Humans, Endosonography methods, Lung Neoplasms pathology, Lung Neoplasms diagnostic imaging, Lung Neoplasms classification, Neoplasm Staging methods
- Published
- 2024
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234. MSL2 variants lead to a neurodevelopmental syndrome with lack of coordination, epilepsy, specific dysmorphisms, and a distinct episignature.
- Author
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Karayol R, Borroto MC, Haghshenas S, Namasivayam A, Reilly J, Levy MA, Relator R, Kerkhof J, McConkey H, Shvedunova M, Petersen AK, Magnussen K, Zweier C, Vasileiou G, Reis A, Savatt JM, Mulligan MR, Bicknell LS, Poke G, Abu-El-Haija A, Duis J, Hannig V, Srivastava S, Barkoudah E, Hauser NS, van den Born M, Hamiel U, Henig N, Baris Feldman H, McKee S, Krapels IPC, Lei Y, Todorova A, Yordanova R, Atemin S, Rogac M, McConnell V, Chassevent A, Barañano KW, Shashi V, Sullivan JA, Peron A, Iascone M, Canevini MP, Friedman J, Reyes IA, Kierstein J, Shen JJ, Ahmed FN, Mao X, Almoguera B, Blanco-Kelly F, Platzer K, Treu AB, Quilichini J, Bourgois A, Chatron N, Januel L, Rougeot C, Carere DA, Monaghan KG, Rousseau J, Myers KA, Sadikovic B, Akhtar A, and Campeau PM
- Subjects
- Adolescent, Child, Child, Preschool, Female, Humans, Male, Developmental Disabilities genetics, DNA Methylation genetics, Epigenesis, Genetic, Histones metabolism, Histones genetics, Induced Pluripotent Stem Cells metabolism, Intellectual Disability genetics, Phenotype, Epilepsy genetics, Neurodevelopmental Disorders genetics, Ubiquitin-Protein Ligases metabolism
- Abstract
Epigenetic dysregulation has emerged as an important etiological mechanism of neurodevelopmental disorders (NDDs). Pathogenic variation in epigenetic regulators can impair deposition of histone post-translational modifications leading to aberrant spatiotemporal gene expression during neurodevelopment. The male-specific lethal (MSL) complex is a prominent multi-subunit epigenetic regulator of gene expression and is responsible for histone 4 lysine 16 acetylation (H4K16ac). Using exome sequencing, here we identify a cohort of 25 individuals with heterozygous de novo variants in MSL complex member MSL2. MSL2 variants were associated with NDD phenotypes including global developmental delay, intellectual disability, hypotonia, and motor issues such as coordination problems, feeding difficulties, and gait disturbance. Dysmorphisms and behavioral and/or psychiatric conditions, including autism spectrum disorder, and to a lesser extent, seizures, connective tissue disease signs, sleep disturbance, vision problems, and other organ anomalies, were observed in affected individuals. As a molecular biomarker, a sensitive and specific DNA methylation episignature has been established. Induced pluripotent stem cells (iPSCs) derived from three members of our cohort exhibited reduced MSL2 levels. Remarkably, while NDD-associated variants in two other members of the MSL complex (MOF and MSL3) result in reduced H4K16ac, global H4K16ac levels are unchanged in iPSCs with MSL2 variants. Regardless, MSL2 variants altered the expression of MSL2 targets in iPSCs and upon their differentiation to early germ layers. Our study defines an MSL2-related disorder as an NDD with distinguishable clinical features, a specific blood DNA episignature, and a distinct, MSL2-specific molecular etiology compared to other MSL complex-related disorders., Competing Interests: Declaration of interests B.S. is a shareholder in EpiSign Inc, involved in commercial uses of EpiSign(TM) technology D.A.C. and K.G.M. are employees of GeneDx, LLC., (Copyright © 2024. Published by Elsevier Inc.)
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- 2024
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235. Methicilin-susceptible Staphylococcus aureus clonal complex 398: An unusual agent of necrotizing pneumonia.
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Nobre C, Moniz P, and Faria NA
- Subjects
- Humans, Middle Aged, Microbial Sensitivity Tests, Pneumonia, Staphylococcal microbiology, Pneumonia, Staphylococcal drug therapy, Pneumonia, Staphylococcal diagnosis, Anti-Bacterial Agents therapeutic use, Anti-Bacterial Agents pharmacology, Pneumonia, Necrotizing diagnosis, Pneumonia, Necrotizing microbiology, Staphylococcus aureus
- Published
- 2024
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236. Genomic insights into the expansion of carbapenem-resistant Klebsiella pneumoniae within Portuguese hospitals.
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Faria NA, Touret T, Simões AS, Palos C, Bispo S, Cristino JM, Ramirez M, Carriço J, Pinto M, Toscano C, Gonçalves E, Gonçalves ML, Costa A, Araújo M, Duarte A, de Lencastre H, Serrano M, Sá-Leão R, and Miragaia M
- Subjects
- Portugal epidemiology, Humans, Aged, Middle Aged, Male, Anti-Bacterial Agents pharmacology, Female, Carbapenems pharmacology, Aged, 80 and over, Cross Infection microbiology, Cross Infection epidemiology, Adult, Plasmids genetics, Drug Resistance, Multiple, Bacterial genetics, Phylogeny, Young Adult, Microbial Sensitivity Tests, Adolescent, Klebsiella Infections microbiology, Klebsiella Infections epidemiology, Klebsiella pneumoniae genetics, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae isolation & purification, Klebsiella pneumoniae classification, Hospitals, Carbapenem-Resistant Enterobacteriaceae genetics, Carbapenem-Resistant Enterobacteriaceae drug effects, Carbapenem-Resistant Enterobacteriaceae isolation & purification, Carbapenem-Resistant Enterobacteriaceae classification, Genome, Bacterial
- Abstract
Carbapenem-resistant Klebsiella pneumoniae (CR-KP) are a public health concern, causing infections with a high mortality rate, limited therapeutic options and challenging infection control strategies. In Portugal, the CR-KP rate has increased sharply, but the factors associated with this increase are poorly explored. In order to address this question, phylogenetic and resistome analysis were used to compare the draft genomes of 200 CR-KP isolates collected in 2017-2019 from five hospitals in the Lisbon region, Portugal. Most CR-KP belonged to sequence type (ST) 13 (29%), ST17 (15%), ST348 (13%), ST231 (12%) and ST147 (7%). Carbapenem resistance was conferred mostly by the presence of KPC-3 (74%) or OXA-181 (18%), which were associated with IncF/IncN and IncX plasmids, respectively. Almost all isolates were multi-drug resistant, harbouring resistance determinants to aminoglycosides, beta-lactams, trimethoprim, fosfomycin, quinolones and sulphonamides. In addition, 11% of isolates were resistant to colistin. Colonizing and infecting isolates were highly related, and most colonized patients (89%) reported a previous hospitalization. Moreover, among the 171 events of cross-dissemination identified by core genome multi-locus sequence typing data analysis (fewer than five allelic differences), 41 occurred between different hospitals and 130 occurred within the same hospital. The results suggest that CR-KP dissemination in the Lisbon region results from acquisition of carbapenemases in mobile genetic elements, influx of CR-KP into the hospitals by colonized ambulatory patients, and transmission of CR-KP within and between hospitals. Prudent use of carbapenems, patient screening at hospital entry, and improvement of infection control are needed to decrease the burden of CR-KP infection in Portugal., (Copyright © 2024 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2024
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237. A one-step low-cost molecular test for SARS-CoV-2 detection suitable for community testing using minimally processed saliva.
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da Silva SM, Amaral C, Malta-Luís C, Grilo D, Duarte AG, Morais I, Afonso G, Faria N, Antunes W, Gomes I, Sá-Leão R, Miragaia M, Serrano M, and Pimentel C
- Abstract
The gold standard for coronavirus disease 2019 diagnostic testing relies on RNA extraction from naso/oropharyngeal swab followed by amplification through reverse transcription-polymerase chain reaction (RT-PCR) with fluorogenic probes. While the test is extremely sensitive and specific, its high cost and the potential discomfort associated with specimen collection made it suboptimal for public health screening purposes. In this study, we developed an equally reliable, but cheaper and less invasive alternative test based on a one-step RT-PCR with the DNA-intercalating dye SYBR Green, which enables the detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) directly from saliva samples or RNA isolated from nasopharyngeal (NP) swabs. Importantly, we found that this type of testing can be fine-tuned to discriminate SARS-CoV-2 variants of concern. The saliva RT-PCR SYBR Green test was successfully used in a mass-screening initiative targeting nearly 4500 asymptomatic children under the age of 12. Testing was performed at a reasonable cost, and in some cases, the saliva test outperformed NP rapid antigen tests in identifying infected children. Whole genome sequencing revealed that the antigen testing failure could not be attributed to a specific lineage of SARS-CoV-2. Overall, this work strongly supports the view that RT-PCR saliva tests based on DNA-intercalating dyes represent a powerful strategy for community screening of SARS-CoV-2. The tests can be easily applied to other infectious agents and, therefore, constitute a powerful resource for an effective response to future pandemics., (© The Author(s) 2024. Published by Oxford University Press.)
- Published
- 2024
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238. Main bronchus fistula: An open window to the lung parenchyma.
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Faria N, Sucena M, and Gomes J
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- Humans, Middle Aged, Bronchoscopy methods, Lung diagnostic imaging, Lung pathology, Tomography, X-Ray Computed methods, Bronchial Fistula diagnosis, Bronchial Fistula diagnostic imaging, Bronchial Fistula surgery
- Abstract
Competing Interests: Conflicts of interest The authors have no conflicts of interest to declare.
- Published
- 2024
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239. Design and Usability of an Open-Source, Low-Cost Flexible Laryngoscope for Resource-Limited Settings.
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Srinivasan Y, Shamritsky D, Bhatta A, Chou E, Pham T, Sanghvi Y, Woolf L, Zhang M, Odigie E, Chidziva C, Muganda E, Zimani P, de Faria N, and Rameau A
- Subjects
- Humans, Resource-Limited Settings, Otolaryngologists, Laryngoscopes, Physicians, Otolaryngology
- Abstract
Importance: Endoscopes are paramount to the practice of otolaryngology. To provide physicians in low-middle-income countries with adequate tools to treat otolaryngologic problems, it is necessary to create a low-cost sustainable option., Objective: To describe the design and usability of an open-source, low-cost flexible laryngoscope that addresses the lack of affordable and accessible methods for otolaryngologic visualization in resource-limited settings., Design, Setting, and Participants: This quality improvement study used a mixed-methods approach, including a technical description of device design as well as quantitative and qualitative survey evaluation of device usability. Engineering involved device design, sourcing or manufacturing individual components, fabricating a prototype, and iterative testing. Key assumptions and needs for the device were identified in collaboration with otolaryngologists in Zimbabwe, and designed and simulated by biomedical engineers in a US university laboratory. Board-certified otolaryngologists at a single US university hospital trialed a completed prototype on simulated airways between May 2023 and June 2023., Main Outcomes and Measures: Technical details on the design of the device are provided. Otolaryngologist gave feedback on device characteristics, maneuverability, and visualization using the System Usability Scale, a customized Likert-scale questionnaire (5-point scale), and semistructured interviews., Results: A functional prototype meeting requirements was completed consisting of a distal-chip camera, spring bending tip, handle housing the control mechanism and electronics, and flexible polyether block amide-coated silicone sheath housing the camera and control wires; an external monitor provided real-time visualization and ability to store data. A total of 14 otolaryngologists participated in the device review. The mean (SD) System Usability Scale score was 88.93 (10.08), suggesting excellent usability. The device was rated highly for ease of set up, physical attributes, image quality, and functionality., Conclusions and Relevance: This quality improvement study described the design of a novel open-source low-cost flexible laryngoscope that external review with otolaryngologists suggests was usable and feasible in various resource-limited environments. Future work is needed to translate the model into a clinical setting.
- Published
- 2024
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240. Emergency department contribution to HCV elimination in the Iberian Peninsula.
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Buti M, Vaz-Pinto I, Magno Pereira V, Casado M, Llaneras J, Barreira A, Esteves C, Guimarães M, Gorgulho A, Mourão T, Xavier E, Jasmins L, Reis AP, Faria N, Freitas B, Andrade G, Camelo-Castillo A, Rodríguez-Maresca MÁ, Carrodeguas A, Medina D, and Esteban R
- Abstract
Background: Undiagnosed cases of hepatitis C virus (HCV) infection result in significant morbidity and mortality, further transmission, and increased public health costs. Testing in emergency departments (EDs) is an opportunity to expand HCV screening. The goal of this project was to increase the proportion of eligible patients screened for HCV in urban areas., Methods: An opportunistic automated HCV screening program was implemented in the EDs of 4 public hospitals in Spain and Portugal at different periods between 2018 and 2023. HCV prevalence was prospectively evaluated, and single-step or reflex testing was used for confirmation in the same sample., Results: More than 90% of the population eligible for testing were screened in the participating centers. We found HCV antibody seroprevalence rates ranging from 0.6 to 3.9%, with between 19 and 53% of viremic individuals., Conclusions: Opportunistic HCV screening in EDs is feasible, does not disrupt ED activities, is highly effective in increasing diagnosis, and contributes to WHO's HCV elimination goals., (© 2023. The Author(s).)
- Published
- 2024
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241. Predicting Exacerbations in Alpha-1 Antitrypsin Deficiency Using Clinical and Pulmonary Function Tests: Portuguese EARCO Registry.
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Faria N, Gomes J, Guimarães C, Marçôa R, Ferraz B, and Sucena M
- Subjects
- Humans, Male, Female, Middle Aged, Portugal epidemiology, Prospective Studies, Aged, Adult, Forced Expiratory Volume, alpha 1-Antitrypsin Deficiency complications, alpha 1-Antitrypsin Deficiency physiopathology, alpha 1-Antitrypsin Deficiency diagnosis, Registries, Disease Progression, Respiratory Function Tests
- Abstract
Introduction: Exacerbations are common in individuals with alpha-1 antitrypsin deficiency (AATD)-related lung disease. This study intended to identify independent predictive factors for exacerbations in AATD using the Portuguese European Alpha-1 Research Collaboration (EARCO) registry., Methods: This study includes patients from the Portuguese EARCO registry, a prospective multicenter cohort (NCT04180319). From October 2020 to April 2023, this registry enrolled 137 patients, 14 of whom were excluded for analysis for either missing 12 months of follow-up or baseline pulmonary function., Results: Among the 123 AATD patients, 27 (22.0%) had at least one exacerbation in the last 12 months of follow-up. Patients with Pi*ZZ phenotype were three times more likely than the rest of the population to experience any exacerbation (32.7 vs. 14.1%, p = 0.014; OR 3.0). BODE index was significantly higher in exacerbators than in non-exacerbators (3.9 ± 2.4 vs. 1.3 ± 1.2; p < 0.001), including on multivariate analysis (p = 0.002). Similar results were found for BODEx (multivariate p < 0.001). DLCO was the only functional parameter independently associated with exacerbations (p = 0.024)., Conclusions: DLCO, BODE, and BODEx were independent predictors of exacerbations at 12 months in AATD patients. Understanding these risk factors can aid decision-making on AATD-related lung disease management and improve patient outcomes., (© 2024 S. Karger AG, Basel.)
- Published
- 2024
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242. PET-CT SUV max and Endobronchial Ultrasound Features for Prediction of Malignancy: A Prospective Study.
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Faria N, Lacerda C, Lopes J, Viana C, and Sucena M
- Subjects
- Humans, Male, Middle Aged, Female, Positron Emission Tomography Computed Tomography, Prospective Studies, Bronchoscopy methods, Neoplasm Staging, Mediastinum pathology, Lymph Nodes diagnostic imaging, Lymph Nodes pathology, Retrospective Studies, Lung Neoplasms diagnostic imaging, Lung Neoplasms pathology
- Abstract
Introduction: Accurate and early staging of lung cancer has a critical impact on its prognosis. EBUS-TBNA is often the procedure of choice for mediastinal staging. Comprehension of the likelihood of malignancy of each lymph node (LN) can assist puncture decision-making during EBUS and offer insight of the procedure expected diagnostic yield., Methods: Prospective analysis of mediastinal LN of patients undergoing EBUS-TBNA from April 2021 to May 2022. The relationship between PET-CT SUV
max levels, EBUS features, and malignancy on LN was investigated. For statistical analysis, patients were assigned to 3 groups: suspected malignancy (diagnosis and/or staging), confirmed malignancy (staging) or suspected benign disease., Results: A total of 363 LN from 132 patients (71% male, mean 62 years old) were analyzed. Among those with suspected benign disease, no LN puncture resulted in a diagnosis of malignancy. PET-CT SUVmax and short axis size were independent factors for malignancy in LN of patients who underwent EBUS for suspected (p < .001 and p = .047, respectively) or confirmed malignancy (p < .001 and p < .001, respectively). All malignant LN presented SUVmax ≥1.85 (≥2.85 for staging EBUS cases) and/or short axis size ≥4.28mm. Vascularized LN were more often malignant in either those with suspected (p = .087) or confirmed (p = .095) malignancy, although not statistically significant. LN that were simultaneously vascularized and lacked central hilar structure were also more commonly malignant (p = .013)., Conclusion: LN that has higher SUVmax and are larger should be prioritized for puncture, followed by those vascularized and lacking central hilar structure. In staging EBUS cases, a systematic sampling (N3-N2-N1) is required and must precede any malignancy yield rationale., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2023
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243. Scale-free dynamics of COVID-19 in a Brazilian city.
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Policarpo JMP, Ramos AAGF, Dye C, Faria NR, Leal FE, Moraes OJS, Parag KV, Peixoto PS, Buss L, Sabino EC, Nascimento VH, and Deppman A
- Abstract
A common basis to address the dynamics of directly transmitted infectious diseases, such as COVID-19, are compartmental (or SIR) models. SIR models typically assume homogenous population mixing, a simplification that is convenient but unrealistic. Here we validate an existing model of a scale-free fractal infection process using high-resolution data on COVID-19 spread in São Caetano, Brazil. We find that transmission can be described by a network in which each infectious individual has a small number of susceptible contacts, of the order of 2-5. This model parameter correlated tightly with physical distancing measured by mobile phone data, such that in periods of greater distancing the model recovered a lower average number of contacts, and vice versa. We show that the SIR model is a special case of our scale-free fractal process model in which the parameter that reflects population structure is set at unity, indicating homogeneous mixing. Our more general framework better explained the dynamics of COVID-19 in São Caetano, used fewer parameters than a standard SIR model and accounted for geographically localized clusters of disease. Our model requires further validation in other locations and with other directly transmitted infectious agents., (© 2023 Published by Elsevier Inc.)
- Published
- 2023
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244. Role of the one-minute sit-to-stand test in the diagnosis of post COVID-19 condition: a prospective cohort study.
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Faria N, Oliveira T, Pinto P, Almeida V, Carvalho R, Fernandes MJ, Sucena M, and Gomes J
- Subjects
- Humans, Prospective Studies, COVID-19 Testing, COVID-19 diagnosis
- Abstract
Objective: To analyze the relationship between one-minute sit-to-stand test (1MSTST) parameters and a diagnosis of post COVID-19 condition in a cohort of patients who previously had COVID-19., Methods: This was a prospective cohort study of patients with post COVID-19 condition referred for body plethysmography at a tertiary university hospital. Post COVID-19 condition was defined in accordance with the current WHO criteria., Results: Fifty-three patients were analyzed. Of those, 25 (47.2%) met the clinical criteria for post COVID-19 condition. HR was lower in the patients with post COVID-19 condition than in those without it at 30 s after initiation of the 1MSTST (86.2 ± 14.3 bpm vs. 101.2 ± 14.7 bpm; p < 0.001) and at the end of the test (94.4 ± 18.2 bpm vs. 117.3 ± 15.3 bpm; p < 0.001). The ratio between HR at the end of the 1MSTST and age-predicted maximal HR (HRend/HRmax) was lower in the group of patients with post COVID-19 condition (p < 0.001). An HRend/HRmax of < 62.65% showed a sensitivity of 78.6% and a specificity of 82.0% for post COVID-19 condition. Mean SpO2 at the end of the 1MSTST was lower in the patients with post COVID-19 condition than in those without it (94.9 ± 3.6% vs. 96.8 ± 2.4%; p = 0.030). The former group of patients did fewer repetitions on the 1MSTST than did the latter (p = 0.020)., Conclusions: Lower SpO2 and HR at the end of the 1MSTST, as well as lower HR at 30 s after initiation of the test, were associated with post COVID-19 condition. In the appropriate clinical setting, an HRend/HRmax of < 62.65% should raise awareness for the possibility of post COVID-19 condition.
- Published
- 2023
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245. A novel nano-iron supplement versus standard treatment for iron deficiency anaemia in children 6-35 months (IHAT-GUT trial): a double-blind, randomised, placebo-controlled non-inferiority phase II trial in The Gambia.
- Author
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Mohammed NI, Wason J, Mendy T, Nass SA, Ofordile O, Camara F, Baldeh B, Sanyang C, Jallow AT, Hossain I, Faria N, Powell JJ, Prentice AM, and Pereira DIA
- Abstract
Background: Iron deficiency anaemia (IDA) is the leading cause of years lost to disability in most sub-Saharan African countries and is especially common in young children. The IHAT-GUT trial assessed the efficacy and safety of a novel nano iron supplement, which is a dietary ferritin analogue termed iron hydroxide adipate tartrate (IHAT), for the treatment of IDA in children under 3 years of age., Methods: In this single-country, randomised, double-blind, parallel, placebo-controlled, non-inferiority Phase II study in The Gambia, children 6-35 months with IDA (7≤Hb < 11 g/dL and ferritin<30 μg/L) were randomly assigned (1:1:1) to receive either IHAT, ferrous sulphate (FeSO
4 ) or placebo daily for 3 months (85 days). The daily iron dose was 12.5 mg Fe equivalent for FeSO4 and the estimated dose with comparable iron-bioavailability for IHAT (20 mg Fe). The primary efficacy endpoint was the composite of haemoglobin response at day 85 and correction of iron deficiency. The non-inferiority margin was 0.1 absolute difference in response probability. The primary safety endpoint was moderate-severe diarrhoea analysed as incidence density and prevalence over the 3 months intervention. Secondary endpoints reported herein include hospitalisation, acute respiratory infection, malaria, treatment failures, iron handling markers, inflammatory markers, longitudinal prevalence of diarrhoea and incidence density of bloody diarrhoea. Main analyses were per-protocol (PP) and intention-to-treat (ITT) analyses. This trial is registered with clinicaltrials.gov (NCT02941081)., Findings: Between Nov 2017 and Nov 2018, 642 children were randomised into the study (214 per group) and included in the ITT analysis, the PP population included 582 children. A total of 50/177 (28.2%) children in the IHAT group achieved the primary efficacy endpoint, as compared with 42/190 (22.1%) in the FeSO4 group (OR 1.39, 80% CI 1.01-1.91, PP population) and with 2/186 (1.1%) in the placebo group. Diarrhoea prevalence was similar between groups, with 40/189 (21.2%) children in the IHAT group developing at least one episode of moderate-severe diarrhoea over the 85 days intervention, compared with 47/198 (23.7%) in the FeSO4 group (OR 1.18, 80% CI 0.86-1.62) and 40/195 (20.5%) in the placebo group (OR 0.96, 80% CI 0.7-1.33, PP population). Incidence density of moderate-severe diarrhoea was 2.66 in the IHAT group and 3.42 in the FeSO4 group (RR 0.76, 80% CI 0.59-0.99, CC-ITT population).There were 143/211 (67.8%) children with adverse events (AEs) in the IHAT group, 146/212 (68.9%) in the FeSO4 group and 143/214 (66.8%) in the placebo group. There were overall 213 diarrhoea-related AEs; 35 (28.5%) cases reported in the IHAT group compared with 51 (41.5%) cases in the FeSO4 group and 37 (30.1%) cases in the placebo group., Interpretation: In this first Phase II study conducted in young children with IDA, IHAT showed sufficient non-inferiority compared to standard-of-care FeSO4 , in terms of ID correction and haemoglobin response, to warrant a definitive Phase III trial. In addition, IHAT had lower incidence of moderate-severe diarrhoea than FeSO4 , with no increased adverse events in comparison with placebo., Funding: The Bill & Melinda Gates Foundation (OPP1140952)., Competing Interests: D.I.A.P., N.F. and J.J.P. are inventors of the IHAT iron supplementation technology, for which they could receive future awards to inventors through the MRC Awards to Inventor scheme. They are also scientific advisors to Nemysis Ltd, who now hold the license for IHAT. They have received honoraria or consultancy fees from some or all of: Vifor Pharma UK, Shield Therapeutics, Entia Ltd, Danone Nutricia, UN Food and Agriculture Organisation (FAO) and Nemysis Ltd, for work concerning iron in health. D.I.A.P. has since moved to full employment in the iron and health industry with Vifor Pharma UK but all work pertaining to this publication was conducted whilst at the University of Cambridge and MRC Unit The Gambia at LSHTM. Nemysis Ltd paid consulting fees to J.W.’s Institution. Notwithstanding, the authors declare no potential conflicts of interest with respect to the research, authorship, and/or publication of this article., (© 2023 The Authors.)- Published
- 2023
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246. A Unique Case of Gordonia bronchialis Pneumonia.
- Author
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Quita R, Ferraz B, Silva B, Faria N, Dias C, and Cruz H
- Subjects
- Humans, DNA, Bacterial, Sequence Analysis, DNA, Actinobacteria, Gordonia Bacterium genetics
- Published
- 2023
- Full Text
- View/download PDF
247. Analysis of a Cell Wall Mutant Highlights Rho-Dependent Genome Amplification Events in Staphylococcus aureus.
- Author
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Portela R, A Faria N, Mwangi M, Miragaia M, de Lencastre H, Tomasz A, and Gonçalves Sobral R
- Subjects
- Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, beta-Lactams analysis, Microbial Sensitivity Tests, Oxacillin analysis, Peptidoglycan chemistry, Gene Amplification, Cell Wall chemistry, Staphylococcus aureus genetics, Genome, Bacterial
- Abstract
In a study of antibiotic resistance in Staphylococcus aureus, specific cell wall mutants were previously generated for the peptidoglycan biosynthesis gene murF , by the insertion of an integrative plasmid. A collection of 30 independent mutants was obtained, and all harbored a variable number of copies of the inserted plasmid, arranged in tandem in the chromosome. Of the 30 mutants, only 3, F9, F20 and F26, with a lower number of plasmid copies, showed an altered peptidoglycan structure, lower resistance to β-lactams and a different loss-of-function mutation in rho gene, that encodes a transcription termination factor. The rho mutations were found to correlate with the level of oxacillin resistance, since genetic complementation with rho gene reestablished the resistance and cell wall parental profile in F9, F20 and F26 strains. Furthermore, complementation with rho resulted in the amplification of the number of plasmid tandem repeats, suggesting that Rho enabled events of recombination that favored a rearrangement in the chromosome in the region of the impaired murF gene. Although the full mechanism of reversion of the cell wall damage was not fully elucidated, we showed that Rho is involved in the recombination process that mediates the tandem amplification of exogeneous DNA fragments inserted into the chromosome. IMPORTANCE The cell wall of bacteria, namely, peptidoglycan, is the target of several antibiotic classes such as β-lactams. Staphylococcus aureus is well known for its capacity to adapt to antibiotic stress and develop resistance strategies, namely, to β-lactams. In this context, the construction of cell wall mutants provides useful models to study the development of such resistance mechanisms. Here, we characterized a collection of independent mutants, impaired in the same peptidoglycan biosynthetic step, obtained through the insertion of a plasmid in the coding region of murF gene. S. aureus demonstrated the capacity to overcome the cell wall damage by amplifying the copy number of the inserted plasmid, through an undescribed mechanism that involves the Rho transcription termination factor.
- Published
- 2022
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248. Small Extracellular Vesicles Secreted by Nigrostriatal Astrocytes Rescue Cell Death and Preserve Mitochondrial Function in Parkinson's Disease.
- Author
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Leggio L, L'Episcopo F, Magrì A, Ulloa-Navas MJ, Paternò G, Vivarelli S, Bastos CAP, Tirolo C, Testa N, Caniglia S, Risiglione P, Pappalardo F, Serra A, García-Tárraga P, Faria N, Powell JJ, Peruzzotti-Jametti L, Pluchino S, García-Verdugo JM, Messina A, Marchetti B, and Iraci N
- Subjects
- Humans, Astrocytes metabolism, Neurotoxins metabolism, Neurotoxins pharmacology, Caspase 3 metabolism, Dopaminergic Neurons metabolism, Mitochondria, Cell Death, Dopamine pharmacology, Adenosine Triphosphate metabolism, Parkinson Disease metabolism, Neuroblastoma metabolism, Extracellular Vesicles metabolism
- Abstract
Extracellular vesicles (EVs) are emerging as powerful players in cell-to-cell communication both in healthy and diseased brain. In Parkinson's disease (PD)-characterized by selective dopaminergic neuron death in ventral midbrain (VMB) and degeneration of their terminals in striatum (STR)-astrocytes exert dual harmful/protective functions, with mechanisms not fully elucidated. Here, this study shows that astrocytes from the VMB-, STR-, and VMB/STR-depleted brains release a population of small EVs in a region-specific manner. Interestingly, VMB-astrocytes secreted the highest rate of EVs, which is further exclusively increased in response to CCL3, a chemokine that promotes robust dopaminergic neuroprotection in different PD models. The neuroprotective potential of nigrostriatal astrocyte-EVs is investigated in differentiated versus undifferentiated SH-SY5Y cells exposed to oxidative stress and mitochondrial toxicity. EVs from both VMB- and STR-astrocytes counteract H
2 O2 -induced caspase-3 activation specifically in differentiated cells, with EVs from CCL3-treated astrocytes showing a higher protective effect. High resolution respirometry further reveals that nigrostriatal astrocyte-EVs rescue neuronal mitochondrial complex I function impaired by the neurotoxin MPP+ . Notably, only EVs from VMB-astrocyte fully restore ATP production, again specifically in differentiated SH-SY5Y. These results highlight a regional diversity in the nigrostriatal system for the secretion and activities of astrocyte-EVs, with neuroprotective implications for PD., (© 2022 The Authors. Advanced Healthcare Materials published by Wiley-VCH GmbH.)- Published
- 2022
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249. Screening for TB infection: the operator´s impact.
- Author
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Faria N and Reis R
- Subjects
- Humans, Interferon-gamma Release Tests methods, Mass Screening methods, Retrospective Studies, Tuberculin Test methods, Latent Tuberculosis diagnosis
- Abstract
BACKGROUND: Accurate diagnosis of TB infection (TBI) is challenging due to the lack of a gold standard. Tuberculin skin test (TST) and interferon-gamma release assay (IGRA) are currently useful in TBI diagnosis, but both have several limitations. This study aims to evaluate inter-operator variability in TST measurements and determine its impact on TBI diagnosis and treatment. METHODS: This was a retrospective analysis of patients screened for TBI using at least TST at a public outpatient clinic specialised in TB from January 2019 to August 2021. TST readings performed by five experienced nurses were compared. RESULTS: A total of 671 screenings were analysed. TST positivity rate ( P < 0.001) and mean TST measurements obtained by our nurses were significantly different ( P < 0.001). Concordance of TST and IGRA results was of 83.4% in the overall population (κ = 0.479). However, TST/IGRA agreement was significantly different among nurses ( P = 0.003). CONCLUSION: Our analysis of TST measurements by experienced nurses shows significant differences in TST positivity rate, mean measured values and overall concordance with IGRA. This led to significant different outcomes in TBI diagnosis and subsequent treatment. TST measurement differences could potentially be more pronounced if we considered untrained operators or those with occasional reading experience.
- Published
- 2022
- Full Text
- View/download PDF
250. Biotechnological production of specialty aromatic and aromatic-derivative compounds.
- Author
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Braga A and Faria N
- Subjects
- Biomass, Metabolic Engineering methods, Organic Chemicals metabolism, Biotechnology, Medicine
- Abstract
Aromatic compounds are an important class of chemicals with different industrial applications. They are usually produced by chemical synthesis from petroleum-derived feedstocks, such as toluene, xylene and benzene. However, we are now facing threats from the excessive use of fossil fuels causing environmental problems such as global warming. Furthermore, fossil resources are not infinite, and will ultimately be depleted. To cope with these problems, the sustainable production of aromatic chemicals from renewable non-food biomass is urgent. With this in mind, the search for alternative methodologies to produce aromatic compounds using low-cost and environmentally friendly processes is becoming more and more important. Microorganisms are able to produce aromatic and aromatic-derivative compounds from sugar-based carbon sources. Metabolic engineering strategies as well as bioprocess optimization enable the development of microbial cell factories capable of efficiently producing aromatic compounds. This review presents current breakthroughs in microbial production of specialty aromatic and aromatic-derivative products, providing an overview on the general strategies and methodologies applied to build microbial cell factories for the production of these compounds. We present and describe some of the current challenges and gaps that must be overcome in order to render the biotechnological production of specialty aromatic and aromatic-derivative attractive and economically feasible at industrial scale., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)
- Published
- 2022
- Full Text
- View/download PDF
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