200 results on '"Yonghong Song"'
Search Results
152. Changing a protein into a generalized acylating reagent. Reaction of nucleophiles with 3,5-dibromosalicyl trimesyl-((Lys-.beta.-82)-(Lys-.beta.-82))-hemoglobin
- Author
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Ronald Kluger and Yonghong Song
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Acylation ,Tris ,chemistry.chemical_compound ,Nucleophile ,Chemistry ,Stereochemistry ,Amide ,Reagent ,Organic Chemistry ,Chemical modification ,Trimesic acid ,Hemoglobin - Abstract
The reaction of human hemoglobin A with trimesoyl tris(3,5-dibromosalicylate) produces the 3,5-dibromosalicyl ester of the bis(amide) of trimesic acid and the e-amino groups of each of the Lys-82 residues of the two β-subunits of hemoglobin (3,5-dibromosalicyl trimesyl-((Lys-β-82)-(Lys-β-82))-hemoglobin; DBST-Hb). This cross-linked protein containing a reactive ester site behaves as an acylating agent toward a variety of biochemically interesting nucleophiles. The products are acyl derivatives, as established by chromatographic and mass spectral analysis. The procedures demonstrate that the multifunctional reagent converts the protein into a reagent which is capable of directly generating bioconjugates of defined structure
- Published
- 1994
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153. A spatial FCM color quantization algorithm with pyramid data structure
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Yuanlin Zhang, Yonghong Song, and Xiaobing Wang
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Linde–Buzo–Gray algorithm ,Mathematics::General Mathematics ,Color image ,business.industry ,Computer Science::Information Retrieval ,Fuzzy set ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Pattern recognition ,Data_CODINGANDINFORMATIONTHEORY ,Data structure ,Fuzzy logic ,Color quantization ,ComputingMethodologies_PATTERNRECOGNITION ,Computer Science::Computational Engineering, Finance, and Science ,Computer Science::Computer Vision and Pattern Recognition ,Pyramid (image processing) ,Artificial intelligence ,business ,Quantization (image processing) ,Algorithm ,Mathematics - Abstract
Fuzzy C-Means (FCM) algorithm is an important color quantization technology. Though it is widely used, its runtime is long and its quantization result is not good enough. In the paper, a spatial FCM color quantization algorithm which uses pyramid data structure for the hierarchical analysis of a color image is proposed. Experiments show that the algorithm has better quantization result and shorter runtime than the conventional FCM algorithm and the spatial FCM algorithm before.
- Published
- 2011
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154. A Handwritten Character Extraction Algorithm for Multi-language Document Image
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Yuanlin Zhang, Guilin Xiao, Liuliu Zhao, Yonghong Song, and Lei Yang
- Subjects
Connected component ,Markov random field ,Contextual image classification ,Language identification ,Computer science ,business.industry ,Feature extraction ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Pattern recognition ,Context (language use) ,Image segmentation ,computer.software_genre ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Artificial intelligence ,business ,computer ,Connected-component labeling ,Natural language processing - Abstract
In this paper, we propose a novel method for extracting handwritten characters from multi-language document images, which may contain various types of characters, e.g. Chinese, English, Japanese or their mixture. Firstly, text patches in document image are segmented based on connected component analysis. Rules for merging connected components are chosen according to the results of language identification. Then features are extracted for each basic analysis unit-text patch. Genetic algorithm is applied for feature fusion and patch type classification. Finally, a Markov Random Field model is utilized as a post-processing step to further correct the misclassification of text patch type by considering the document context. Experimental results show that the proposed algorithm can apparently improve the performance of handwritten character extraction.
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- 2011
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155. A robust inverse halftoning algorithm based on parameter estimation for AM halftone image
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Yong Xudong, Yonghong Song, and Yuanlin Zhang
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Halftone ,Estimation theory ,business.industry ,Binary image ,Feature extraction ,Pattern recognition ,Grayscale ,Edge detection ,Robustness (computer science) ,Artificial intelligence ,business ,Algorithm ,Image retrieval ,Mathematics - Abstract
In printing industry, Amplitude Modulation (AM) screening is one of the most important halftone methods to create dot screen, and is used to convert continuous tone image into binary image. On the contrary, in order to get a good visual effect and to do further OCR, we need to remove dot screen by employing inverse halftoning algorithm, however, it is difficult to find a tradeoff between screen suppression and edge details preservation. In this paper, a robust inverse halftoning algorithm based on parameter estimation is proposed, which can deal with the above difficulty perfectly. The proposed algorithm comprises three steps, extraction of screening region, estimation of screening parameters, and inverse transform. Experimental results show that the proposed method is independent with parameters and is robust to obtain good visual performance.
- Published
- 2011
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156. Upregulation of B7-H1 expression is associated with macrophage infiltration in hepatocellular carcinomas
- Author
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Jie Chen, Lining Zhang, Yu-Chen Fan, Yongyu Shi, Faliang Zhu, Chun Guo, Shurong Wang, Hong Meng, Guosheng Li, and Yonghong Song
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Cancer Research ,Pathology ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,medicine.medical_treatment ,Immunology ,Programmed Cell Death 1 Receptor ,Inflammation ,B7-H1 Antigen ,Downregulation and upregulation ,PD-L1 ,Cell Line, Tumor ,medicine ,Immunology and Allergy ,Humans ,STAT3 ,biology ,Macrophages ,Liver Neoplasms ,Immunotherapy ,Immunohistochemistry ,digestive system diseases ,Up-Regulation ,Oncology ,biology.protein ,Cancer research ,Tumor promotion ,medicine.symptom ,CD8 - Abstract
The overexpression of B7-H1 in hepatocellular carcinoma (HCC) mediates HCC immune escape and obstructs the immunotherapy based on tumor-specific CD8+ T cells. Tumor-associated macrophages (TAM) are a major component of cancer-related inflammation and play a central role in tumor promotion. To classify the mechanism underlying the overexpression of B7-H1 in HCC, we examined B7-H1 expression and TAM infiltration in 63 cases of human HCC samples using immunohistochemistry method and found that B7-H1 overexpression was associated with TAM infiltration in HCC tissues. Furthermore, B7-H1 expression was upregulated at both mRNA level and protein level in HCC cells (BEL-7402 and SMMC-7721) cocultured with macrophages in a transwell system. The upregulation of B7-H1 expression induced by macrophage was inhibited by blocking NF-κB or STAT3 signal pathways. These results suggest that overexpression of B7-H1 in HCC may be induced by inflammatory microenvironment involving macrophages and imply that anti-inflammation therapy might be preventive for immune escape and assistant for immunotherapy of HCC.
- Published
- 2011
157. ChemInform Abstract: Trimesoyltris(3,5-dibromosalicylate): Specificity of Reactions of a Trifunctional Acylating Agent with Hemoglobin
- Author
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Charlotte Head, Jolanta Wodzinska, Thomas S. Fujita, Richard T. Jones, Yonghong Song, and Ronald Kluger
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Acylation ,Hydrolysis ,chemistry.chemical_compound ,Hemoglobin A ,chemistry ,Reagent ,Trifluoroacetic acid ,medicine ,Organic chemistry ,General Medicine ,Hemoglobin ,Chloride ,medicine.drug - Abstract
Trimesoyltris(3,5-dibromosalicylate)(TTDS) was prepared and evaluated as a trifunctional site-directed protein cross-linking reagent. It is synthesized by reaction of trimesoyl chloride with tert-butyl 3,5-dibromosalicylate, followed by deprotection with trifluoroacetic acid. TTDS reacts with the deoxy form of human hemoglobin A and with carbonmonoxyhemoglobin to produce amides from the e-amino groups of Lys-82 of each of the β chains of homoglobin. The third 3,5-dibromosalicylate ester group from TTDS reacts much more slowly, principally undergoing hydrolysis
- Published
- 2010
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158. ChemInform Abstract: Design, Synthesis, and SAR of Substituted Acrylamides as Factor Xa Inhibitors
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Yonghong Song and et al. et al.
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Design synthesis ,medicine.drug_mechanism_of_action ,Chemistry ,Factor Xa Inhibitor ,medicine ,General Medicine ,Combinatorial chemistry - Published
- 2010
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159. ChemInform Abstract: Substituted Acrylamides as Factor Xa Inhibitors: Improving Bioavailability by P1 Modification
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Yonghong Song and et al. et al.
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medicine.drug_mechanism_of_action ,Chemistry ,Factor Xa Inhibitor ,medicine ,General Medicine ,Combinatorial chemistry ,Bioavailability - Published
- 2010
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160. Production of donor-derived offspring from cryopreserved ovarian tissue in Japanese quail (Coturnix japonica)
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Jianan, Liu, Yonghong, Song, Kimberly M, Cheng, and Frederick G, Silversides
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Cryopreservation ,Oocyte Donation ,Cell Survival ,Models, Animal ,Ovary ,Animals ,Female ,Coturnix - Abstract
Cryopreservation of avian ova and embryos is challenging because of the yolky structure of the egg. As an alternative, with the development of effective cryopreservation protocols, ovarian tissue cryopreservation could be used for cryobanking for birds. Pieces of ovarian tissue of week-old Japanese quail (Coturnix japonica) were frozen at 0.5 degrees C/min in a programmable freezer or vitrified by immersion in liquid nitrogen. Straws containing slow-frozen samples were thawed in ice water, and vitrified samples were removed from the vials and transferred into sucrose, with the concentration lowered in sequence at room temperature. Cell viability of tissue was estimated by trypan blue assay, and tissue histology was examined by light microscopy. Frozen-thawed or vitrified-warmed tissue from WB (recessive plumage color) chicks was transplanted into week-old ovariectomized QO (wild-type plumage) chicks, with some chicks receiving fresh tissue as a control group. At sexual maturity, QO recipients were mated to WB males, and the production of WB offspring demonstrated successful cryopreservation and transplantation. Donor-derived offspring were obtained from the ovarian tissue that had been cryopreserved by either slow-freezing or vitrification. The vitrification protocol used in this study showed better outcomes at each level of evaluation. This study demonstrated that the function of ovarian tissue in avian species can be successfully preserved at subzero temperatures and recovered by transplantation. The vitrification protocol is recommended because of high efficiency and overall simplicity.
- Published
- 2010
161. Trimesoyltris(3,5-dibromosalicylate): specificity of reactions of a trifunctional acylating agent with hemoglobin
- Author
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Jolanta Wodzinska, Charlotte Head, Richard T. Jones, Thomas S. Fujita, Yonghong Song, and Ronald Kluger
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chemistry.chemical_classification ,Hemeprotein ,Carboxylic acid ,General Chemistry ,Biochemistry ,Medicinal chemistry ,Chemical synthesis ,Catalysis ,Acylation ,chemistry.chemical_compound ,Hydrolysis ,Colloid and Surface Chemistry ,chemistry ,Reagent ,Trifluoroacetic acid ,Hemoglobin - Abstract
Trimesoyltris(3,5-dibromosalicylate)(TTDS) was prepared and evaluated as a trifunctional site-directed protein cross-linking reagent. It is synthesized by reaction of trimesoyl chloride with tert-butyl 3,5-dibromosalicylate, followed by deprotection with trifluoroacetic acid. TTDS reacts with the deoxy form of human hemoglobin A and with carbonmonoxyhemoglobin to produce amides from the e-amino groups of Lys-82 of each of the β chains of homoglobin. The third 3,5-dibromosalicylate ester group from TTDS reacts much more slowly, principally undergoing hydrolysis
- Published
- 1992
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162. Discovery of betrixaban (PRT054021), N-(5-chloropyridin-2-yl)-2-(4-(N,N-dimethylcarbamimidoyl)benzamido)-5-methoxybenzamide, a highly potent, selective, and orally efficacious factor Xa inhibitor
- Author
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Lane A. Clizbe, Anjali Pandey, Robert M. Scarborough, Athiwat Hutchaleelaha, Zhaozhong J. Jia, Gary Park, Erick A. Goldman, James Kanter, Lingyan Wang, Yanhong Wu, Ting Su, Gary Probst, Wenhao Li, Susan Edwards, Jingmei Fan, Paul W. Wong, Stanley J. Hollenbach, Uma Sinha, Wenrong Huang, Bauer Shawn M, Joseph L. Lambing, Ann E. Arfsten, Yonghong Song, Penglie Zhang, Bing-Yan Zhu, Bao Liang, and John Woolfrey
- Subjects
ERG1 Potassium Channel ,medicine.drug_mechanism_of_action ,Stereochemistry ,Pyridines ,Clinical Biochemistry ,Factor Xa Inhibitor ,hERG ,Pharmaceutical Science ,Administration, Oral ,Biochemistry ,Chemical synthesis ,Cell Line ,Amidine ,chemistry.chemical_compound ,Dogs ,In vivo ,Catalytic Domain ,Drug Discovery ,medicine ,Animals ,Humans ,Molecular Biology ,biology ,Dose-Response Relationship, Drug ,Drug discovery ,Chemistry ,Organic Chemistry ,Anticoagulants ,Ether-A-Go-Go Potassium Channels ,Rats ,Macaca fascicularis ,Enzyme inhibitor ,Betrixaban ,Benzamides ,Factor Xa ,biology.protein ,Molecular Medicine ,Rabbits ,Factor Xa Inhibitors - Abstract
Systematic SAR studies of in vitro factor Xa inhibitory activity around compound 1 were performed by modifying each of the three phenyl rings. A class of highly potent, selective, efficacious and orally bioavailable direct factor Xa inhibitors was discovered. These compounds were screened in hERG binding assays to examine the effects of substitution groups on the hERG channel affinity. From the leading compounds, betrixaban (compound 11, PRT054021) has been selected as the clinical candidate for development.
- Published
- 2009
163. Synthesis of 3-fluorodiaminopimelic acid isomers as inhibitors of diaminopimelate epimerase: stereocontrolled enzymatic elimination of hydrogen fluoride
- Author
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Michael A. Pickard, John C. Vederas, Michael H. Gelb, Yukang Lin, and Yonghong Song
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chemistry.chemical_classification ,Diaminopimelate epimerase ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Enzyme ,chemistry ,Stereochemistry ,Organic chemistry ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Hydrogen fluoride ,Biochemistry ,Catalysis - Published
- 1990
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164. Circular Noises Removal from Scanned Document Images
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Yuanlin Zhang, Nanning Zheng, Gaofeng Meng, and Yonghong Song
- Subjects
Reduction (complexity) ,Surface (mathematics) ,Computer science ,business.industry ,law ,Computer vision ,Noise (video) ,Artificial intelligence ,business ,Interpolation ,Image (mathematics) ,Hough transform ,law.invention - Abstract
Defects inspection and correction is an important topic in the fields of scanned documents preprocessing. In this paper, a very fast and robust algorithm is proposed for locating and removing a special kind of circular noises caused by scanning documents with punched holes. Firstly, original image is reduced according to an elaborately selected ratio. Punched holes after reduction will leave some distinctive small regions. By examining such small regions, holes noises can be fast detected and located. To diminish false detections, Hough transformation is applied to the roughly located regions to further confirm the located holes. Finally, circular noise is eliminated by fitting a bi-linear blending Coons surface which interpolates along the four edges of noisy region. Experiments on a variety of scanned documents with punched holes demonstrate the feasibility and efficiency of the proposed algorithm.
- Published
- 2007
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165. Heterotopic transplantation of testes in newly hatched chickens and subsequent production of offspring via intramagnal insemination
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Yonghong, Song and Frederick, Silversides
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Male ,Transplantation, Heterotopic ,Oviparity ,Testis ,Animals ,Female ,Breeding ,Chickens ,Insemination, Artificial ,Tissue Donors - Abstract
Transplantation of testicular tissue onto the back of immunodeficient nude mice provides a tool to examine testicular development and preserve fertility in mammals. There is no immunodeficient model in birds, but we recently transplanted ovarian tissue between newly hatched chicks from two lines of chickens and produced donor-derived offspring, showing that experimental transplantation is possible in newly hatched chicks. In the present study testicular tissue from newly hatched Barred Plymouth Rock (BPR) chicks was transplanted under the skin of the back, under the skin of the abdomen, or in the abdomen of White Leghorn chicks that had been surgically castrated and immunocompromised. Recipient birds were killed at 10 mo of age. Transplanted tissue was observed in one of five hosts receiving tissue under the skin of the back, two of five hosts receiving tissue under the skin of the abdomen, and three of five chicks with grafts inside the abdominal cavity. In recipients with no regeneration of host testes, testicular transplants grew to the size of normal testes, and histologic analysis showed active spermatogenesis. Subsequent collection of sperm from two successful transplants and surgical insemination of the sperm into the magna of the oviducts of BPR hens resulted in the production of 24 donor-derived chicks. These results demonstrate that the combination of testicular tissue transplantation with intramagnal insemination can produce viable, normal chicks, which could provide a simple approach for the recuperation of live offspring in avian species.
- Published
- 2006
166. A Regeneration Based Lines Restoration Method
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Yuanlin Zhang, Nanning Zheng, Yonghong Song, and Lei Yang
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Computer science ,business.industry ,Line (geometry) ,Computer vision ,Artificial intelligence ,Restoration method ,Regeneration (ecology) ,Representation (mathematics) ,Computational geometry ,business ,Image restoration ,Expression (mathematics) ,Field (computer science) - Abstract
Lines restoration is a specific research issue needed attentions in the image restoration and representation field. Imitating the mechanism of human perception, this article proposes a novel regeneration based method for eliminating degradations of lines in binary document images and engineering drawings. The reformed chain codes expression is used to detect degraded lines in images. Then combining with the information of each original line, we complete lines restoration by regenerating them. Compared with the common methods, the experimental results tested on actual degraded images show the effectiveness and efficiency of our method.
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- 2006
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167. Cardiac Selective Modulator of Human Myosin for the Treatment of Genetic Hypertrophic Cardiomyopathy
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Christopher P. Willits, Hector Rodriguez, Arvinder Sran, Robert L. Anderson, Yonghong Song, Johan D. Oslob, and Haben Ghermazien
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Agonist ,0303 health sciences ,Chemistry ,medicine.drug_class ,Hypertrophic cardiomyopathy ,Diastole ,Biophysics ,macromolecular substances ,Anatomy ,Pharmacology ,medicine.disease ,Sarcomere ,3. Good health ,Contractility ,03 medical and health sciences ,0302 clinical medicine ,Myosin ,cardiovascular system ,medicine ,Myocyte ,MYH7 ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Genetic hypertrophic cardiomyopathy (HCM) results from mutations in the cardiac sarcomere, including β-cardiac myosin, with HCM afflicting about 1 out of every 500 people in the United States. HCM is characterized by hyper-contractility and myocyte hypertrophy. Current agents used to treat HCM include β-blockers and Ca2+ channel blockers to decrease the hyper-contractility and improve cardiac relaxation. A novel and more direct approach to decreasing hyper-contractility and improving diastolic relaxation in HCM patients is by modulating β-cardiac myosin to produce less force. We believe modulation at the sarcomere level provides a focused strategy while lowering the potential for adverse drug events. In this study we examined the effects of MYK0000461, a cardiac myosin selective inhibitor, on adult rat cardiomyocytes to fully understand the mechanism of action on excitation-contraction (E-C) coupling. Cellular contractility was assessed using edge detection and the calcium transient was measured using fura-2 loaded myocytes. MYK0000461 decreased contractility in a dose dependent manner with an IC50 of 250nM without altering the calcium transient. This inhibitory effect can be reversed by stimulation of the β-adrenergic pathway with the known agonist isoproterenol. We hypothesize that modulation of mutant β-cardiac myosin activity with a small molecule agent such as MYK0000461 could potentially treat disorders resulting from hyper-contractility such as HCM.
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- 2014
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168. Correlation Analysis between Fruit Cracking and Influencing Factors in Apricot.
- Author
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Guowei Nie, Kai Li, Yongqiang Tian, Guilin Dai, Xiaoping Zhang, Xiaohua Yang, Yonghong Song, Jingjiang Li, Wujuan Zhao, and Jingli Lyu
- Published
- 2017
169. Correlation Analysis between Cracking and Mineral Element Content of Apricot Fruit.
- Author
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Guowei Nie, Kai Ll, Yongqiang Tian, Guilin Dai, Xiaohua Yang, Yonghong Song, Jingjiang Ll, Xiaoping Zhang, and Jingli Lyu
- Published
- 2017
170. Processor Aware Anticipatory Prefetching in Loops
- Author
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Yonghong Song, Spiros Kalogeropulos, Vikram Rao, Partha P. Tirumalai, and M. Rajagopalan
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Instruction prefetch ,Hardware_MEMORYSTRUCTURES ,business.industry ,Computer science ,Spec# ,Parallel computing ,computer.software_genre ,Electronic mail ,law.invention ,Microprocessor ,Identification (information) ,law ,Embedded system ,Cache ,Compiler ,business ,computer ,Block (data storage) ,computer.programming_language - Abstract
As microprocessor speeds increase, a large fraction of the execution time is often lost to cache miss penalties. This loss can be particularly severe in processors such as the UltraSPARC-IIICu which have in-order execution and block on cache misses. Such processors rely greatly on the compiler to reduce stalls and achieve high performance. This paper describes a compiler technique for software prefetching that is aware of the specific prefetch behaviors of the target processor. The implementation targets loops containing control-flow and strided or irregular memory access patterns. A two phase locality analysis, capable of handling complex subscript expressions, is used for enhanced identification of prefetch candidates. Prefetch instructions are scheduled with careful consideration of the prefetch behaviors in the target system. Compared to a previous implementation, our technique produced performance improvements of 9% on the geometric mean, and up to 44% on individual tests, in Suns first UltraSPARC-IIICu based SPEC CPU2000 submission [5] and has been used in all later submissions to date.
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- 2005
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171. Production of germline chimeric chickens following the administration of a busulfan emulsion
- Author
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Susan D'Costa, James N. Petitte, Yonghong Song, and S. L. Pardue
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Male ,endocrine system ,Alkylating Agents ,animal structures ,food.ingredient ,Offspring ,Endogeny ,Chick Embryo ,Biology ,Germline ,Andrology ,Chimera (genetics) ,food ,Yolk ,Genetics ,medicine ,Animals ,Busulfan ,Ovum ,urogenital system ,Chimera ,fungi ,Embryo ,Cell Biology ,Spermatozoa ,embryonic structures ,Immunology ,Immunohistochemistry ,Female ,Chickens ,Developmental Biology ,medicine.drug - Abstract
Busulfan (1,4-butanediol dimethanesulfonate) was used to deplete endogenous germ cells for the enhanced production of chicken germline chimeras. Utilizing immunohistochemical identification of primordial gem cells (PGCs) in Stage 27 chicken embryos, two delivery formulations were compared relative to the degree of endogenous PGC depletion, a busulfan suspension (BS) and a solublized busulfan emulsion (SBE). Both busulfan treatments resulted in a significant reduction in PGCs when compared to controls. However, the SBE resulted in a more consistent and extensive depletion of PGCs than that observed with the BS treatment. Repopulation of SBE-treated embryos with exogenous PGCs resulted in a threefold increase of PGCs in Stage 27 embryos. Subsequently, germline chimeras were produced by the transfer of male gonadal PGCs from Barred Plymouth Rock embryos into untreated and SBE-treated White Leghorn embryos. Progeny testing of the presumptive chimeras with adult Barred Plymouth Rock chickens was performed to evaluate the efficiency of germline chimera production. The frequency of germline chimerism in SBE-treated recipients increased fivefold when compared to untreated recipients. The number of donor-derived offspring from the germline chimeras also increased eightfold following SBE-treatment of the recipient embryos. These results demonstrated that the administration of a busulfan emulsion into the egg yolk of unincubated eggs improved the depletion of endogenous PGCs in the embryo and enhanced the efficiency of germline chimera production.
- Published
- 2005
172. Design and implementation of a compiler framework for helper threading on multi-core processors
- Author
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Spiros Kalogeropulos, Partha P. Tirumalai, and Yonghong Song
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Instruction prefetch ,UltraSPARC IV ,Multi-core processor ,Hardware_MEMORYSTRUCTURES ,CPU cache ,Computer science ,Thread (computing) ,Parallel computing ,ComputerSystemsOrganization_PROCESSORARCHITECTURES ,computer.software_genre ,Shared memory ,Multithreading ,Operating system ,Compiler ,computer - Abstract
Helper threading is a technique that utilizes a second core or logical processor in a multi-threaded system to improve the performance of the main thread. A helper thread executes in parallel with the main thread that it attempts to accelerate. In this paper, the helper thread merely prefetches data into a shared cache and does not incur any other programmer visible effects. Helper thread prefetching has been proposed as a viable solution in various scenarios where it is difficult to prefetch efficiently within the main thread itself. This paper presents our helper threading experience on SUN's second dual-core SPARC microprocessor, the UltraSPARC IV+. The two cores on this processor share an on-chip L2 and an off-chip L3 cache. We present a compiler framework to automatically construct helper threads and evaluate our scheme on the UltraSPARC IV+ processor. Our preliminary results using helper threads on the SPEC CPU2000 suite show gains of up to 22% on programs that suffer substantial L2 cache misses while at the same time incurring negligible losses on programs that do not suffer L2 cache misses.
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- 2005
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173. Applying array contraction to a sequence of DOALL loops
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null Yonghong Song and null Zhiyuan Li
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- 2004
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174. N,N-Dialkylated 4-(4-arylsulfonylpiperazine-1-carbonyl)-benzamidines and 4-((4-arylsulfonyl)-2-oxo-piperazin-1-ylmethyl)-benzamidines as potent factor Xa inhibitors
- Author
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Uma Sinha, Penglie Zhang, Erick A. Goldman, John Woolfrey, Yanhong Wu, Ting Su, Jingmei Zuckett, Bauer Shawn M, Lane A. Clizbe, Wenhao Li, Athiwat Hutchaleelaha, Stanley J. Hollenbach, Wenrong Huang, Zhaozhong J. Jia, Robert M. Scarborough, Joseph L. Lambing, Ann E. Arfsten, Yonghong Song, and Bing-Yan Zhu
- Subjects
Serine Proteinase Inhibitors ,medicine.drug_mechanism_of_action ,Stereochemistry ,Clinical Biochemistry ,Factor Xa Inhibitor ,Pharmaceutical Science ,Biological Availability ,Biochemistry ,Chemical synthesis ,Amidine ,chemistry.chemical_compound ,Drug Discovery ,medicine ,Thiophene ,Molecular Biology ,biology ,Organic Chemistry ,Biological activity ,Benzamidines ,Piperazine ,chemistry ,Enzyme inhibitor ,biology.protein ,Molecular Medicine ,Factor Xa Inhibitors - Abstract
A class of N,N-dialkylated 4-(4-arylsulfonylpiperazine-1-carbonyl)-benzamidines and 4-((4-arylsulfonyl)-2-oxo-piperazin-1-ylmethyl)-benzamidines has been discovered as potent factor Xa inhibitors with desirable in vitro and in vivo anticoagulant activity, but with low oral bioavailability. The 5-chloroindole and 6-chlorobenzo[b]thiophene groups are optimal as the factor Xa S1 binding elements. The strategy of incorporating a side chain on the piperazine nucleus to enhance binding affinity has been examined.
- Published
- 2003
175. Design and Synthesis of Factor Xa Inhibitors and Their Prodrugs
- Author
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Yonghong Song and et al. et al.
- Subjects
medicine.drug_mechanism_of_action ,Chemistry ,Factor Xa Inhibitor ,medicine ,General Medicine ,Prodrug ,Combinatorial chemistry - Published
- 2003
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176. Design, synthesis and structure-activity relationships of benzoxazinone-based factor Xa inhibitors
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Stanley J. Hollenbach, Uma Sinha, Paul W. Wong, Brian Huang, Andrea Reed, Lingyan Wang, Jingmei Zuckett, John Malinowski, Lane A. Clizbe, Penglie Zhang, Ting Su, Gary Park, Zhaozhong J. Jia, Yonghong Song, Bing-Yan Zhu, John Woolfrey, Wenrong Huang, Robert M. Scarborough, and Katherine Tran
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Models, Molecular ,medicine.drug_mechanism_of_action ,Stereochemistry ,Clinical Biochemistry ,Factor Xa Inhibitor ,Molecular Conformation ,Pharmaceutical Science ,In Vitro Techniques ,Crystallography, X-Ray ,Biochemistry ,Chemical synthesis ,Binding, Competitive ,Amidine ,chemistry.chemical_compound ,Structure-Activity Relationship ,Drug Discovery ,Oxazines ,medicine ,Moiety ,Structure–activity relationship ,Animals ,Molecular Biology ,Aniline Compounds ,biology ,Dose-Response Relationship, Drug ,Benzoxazinones ,Organic Chemistry ,Thrombin ,Trypsin ,chemistry ,Enzyme inhibitor ,Drug Design ,biology.protein ,Molecular Medicine ,Indicators and Reagents ,Rabbits ,Trypsin Inhibitors ,medicine.drug ,Factor Xa Inhibitors - Abstract
A series of benzoxazinone derivatives was designed and synthesized as factor Xa inhibitors. We demonstrated that the naphthyl moiety in the aniline-based compounds 1 and 2 can be replaced with benzene-fused heterobicycles and biaryls to give factor Xa inhibitors with improved trypsin selectivity. The P4 modifications lead to monoamidines which are moderately active. The benzoxazinones 41-45 are potent against factor Xa, retain the improved trypsin selectivity of the corresponding aniline-based compounds, and show strong antithrombotic effect dose responsively.
- Published
- 2003
177. Locality Enhancement by Array Contraction
- Author
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Yonghong Song, Zhiyuan Li, and Cheng Wang
- Subjects
CPU cache ,Computer science ,Loop fusion ,Locality ,Parallel computing - Abstract
In this paper, we study how array contraction can enhance locality and improve performance. In our previous work, we have developed a memory minimization scheme, SFC, which is a combination of loop shifting, loop fusion and array contraction. SFC focuses on reducing the memory requirement, and as a by-product, it may enhance cache locality. In this paper, we study how array contraction can contribute to cache locality and performance enhancement. We develop a memory cost model for SFC. We also present a fusion algorithm so that the predicted locality enhancement can be realized. Experimental results on both a real machine and a simulator demonstrate the effectiveness of array contraction on cache locality enhancement and performance improvement.
- Published
- 2003
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178. Design and synthesis of factor Xa inhibitors and their prodrugs
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Katherine Tran, Gary Park, Paul W. Wong, Andrea Reed, Robert M. Scarborough, Lane A. Clizbe, Bing Yan Zhu, Uma Sinha, Chhaya Bhakta, Brian Huang, Willy Teng, and Yonghong Song
- Subjects
Serine Proteinase Inhibitors ,medicine.drug_mechanism_of_action ,Stereochemistry ,Clinical Biochemistry ,Factor Xa Inhibitor ,Amidines ,Pharmaceutical Science ,Biological Availability ,Biochemistry ,Chemical synthesis ,Amidine ,chemistry.chemical_compound ,Structure-Activity Relationship ,Dogs ,Pharmacokinetics ,Oral administration ,Drug Discovery ,medicine ,Animals ,Prodrugs ,Molecular Biology ,biology ,Organic Chemistry ,Prodrug ,Combinatorial chemistry ,Bioavailability ,Rats ,chemistry ,Enzyme inhibitor ,Drug Design ,biology.protein ,Molecular Medicine ,Factor Xa Inhibitors - Abstract
In addition to our previously reported fluoro acrylamides Xa inhibitors 2 and 3 , a series of potent and novel cyclic diimide amidine compounds has been identified. In efforts to improve their oral bioavailability, replacement of the amidine group with methyl amidrazone gives compounds of moderate potency ( 14 , IC 50 =0.028 μM). In the amidoxime prodrug approach, the amidoxime compounds show good oral bioavailability in rats and dogs. High plasma level of prodrug 26 and significant concentration of active drug 26a were obtained upon oral administration of prodrug 26 in rats.
- Published
- 2002
179. High-level information-an approach for integrating front-end and back-end compilers
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David J. Lilja, Qing Zhao, Jenn-Yuan Tsai, Yonghong Song, Sangyeun Cho, Bixia Zheng, Pen-Chung Yew, Stephen Joseph Schwinn, Zhiyuan Li, and Xin Wang
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Front and back ends ,Computer science ,Spec# ,Compiler ,Parallel computing ,computer.software_genre ,Data structure ,computer ,computer.programming_language - Abstract
We propose a new universal High-Level Information (HLI) format to effectively integrate front-end and back-end compilers by passing front-end information to the back-end compiler. Importing this information into an existing back-end leverages the state-of-the-art analysis and transformation capabilities of existing front-end compilers to allow the back-end greater optimization potential than it has when relying on only locally-extracted information. A version of the HLI has been implemented in the SUIF parallelizing compiler and the GCC back-end compiler. Experimental results with the SPEC benchmarks show that HLI can provide GCC with substantially more accurate data dependence information than it can obtain on its own. Our results show that the number of dependence edges in GCC can be reduced by an average of 48% for the integer benchmark programs and an average of 54% for the floating-point benchmark programs studied, which provides greater flexibility to GCC's code scheduling pass. Even with the scheduling optimization limited to basic blocks, the use of HLI produces moderate speedups compared to using only GCC's dependence tests when the optimized programs are executed on MIPS R4600 and R10000 processors.
- Published
- 2002
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180. Influence of simulated microgravity on avian primordial germ cell migration and reproductive capacity
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Jin Sha, Hua Wei, Chunhai Liu, Jinsong Huang, Yonghong Song, Fujiro Sakurai, Ning Wang, Zandong Li, and Yuzhong Ma
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endocrine system ,animal structures ,Rotation ,Chick Embryo ,Quail ,Primordial germ cell migration ,Andrology ,Cell Movement ,biology.animal ,Animals ,Hatchling ,Weightlessness Simulation ,biology ,urogenital system ,Weightlessness ,Reproduction ,Embryo ,General Medicine ,Germ Cells ,Simulated microgravity ,embryonic structures ,Immunology ,Animal Science and Zoology ,Female ,Reproductive capacity ,Clinostat - Abstract
Fertilized eggs of chicken and quail were incubated under the simulated microgravity condition provided by a clinostat. The number of Primordial Germ Cells (PGCs) was counted in early embryogenesis, and the reproductive capacity of quail hatched following the simulated microgravity was investigated. Simulated microgravity caused significant decline of PGCs in the blood of early chicken embryos and in the gonads. The numbers of spermatogonia in the hatchling testis were also fewer than those in the control groups. Therefore, simulated microgravity may retard gonadial development and reduce the reproductive capacity.
- Published
- 2002
181. Design, synthesis, and SAR of substituted acrylamides as factor Xa inhibitors
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Katherine Tran, Robert M. Scarborough, Yanhong Wu, Ting Su, Willy Teng, Andrea Reed, Brian Huang, Uma Sinha, Penglie Zhang, Paul W. Wong, James Kanter, Brandon Doughan, Lingyan Wang, Yonghong Song, Bing-Yan Zhu, Wenhao Li, John Malinowski, Stan Hollenbach, Chhaya Bhakta, Zhaozhong Jon Jia, Gary Park, Lane A. Clizbe, and John Woolfrey
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Models, Molecular ,medicine.drug_mechanism_of_action ,medicine.drug_class ,Stereochemistry ,Clinical Biochemistry ,Factor Xa Inhibitor ,Antithrombin III ,Pharmaceutical Science ,Biological Availability ,Carboxamide ,Stereoisomerism ,Ligands ,Biochemistry ,Chemical synthesis ,Amidine ,chemistry.chemical_compound ,Structure-Activity Relationship ,Drug Discovery ,medicine ,Structure–activity relationship ,Animals ,Binding site ,Molecular Biology ,chemistry.chemical_classification ,Acrylamides ,Binding Sites ,Chemistry ,Organic Chemistry ,Thrombosis ,Templates, Genetic ,Sulfonamide ,Rats ,Disease Models, Animal ,Drug Design ,Molecular Medicine ,Rabbits ,Factor Xa Inhibitors - Abstract
Substituted acrylamides were used as templates that bridge P1 and P4 binding elements, resulting in a series of potent (sub-nanomolar) and selective factor Xa inhibitors. In this template, cis-geometry of P1 and P4 ligands is highly preferred. SAR on the substituting groups, as well as on modification of P1 and P4 moieties is described. Compounds in this series show good in vivo efficacy in animal models.
- Published
- 2002
182. Impact of Tile-Size Selection for Skewed Tiling
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Zhiyuan Li and Yonghong Song
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Speedup ,Computer Sciences ,Computer science ,Benchmark (computing) ,Overhead (computing) ,Optimizing compiler ,Parallel computing ,Relaxation (approximation) ,Loop tiling ,Selection algorithm ,Selection (genetic algorithm) - Abstract
Tile-size selection is known to be a complex problem. This paper develops a new selection algorithm targeting relaxation codes. Unlike previous algorithms, this new algorithm considers the effect of loop skewing, which is necessary to tile such codes. It also estimates loop overhead and incorporates them into the execution cost model, which turns out to be critical to the decision between tiling a single loop level vs. tiling two loop levels. Our preliminary experimental results show a significant impact of these previously ignored issues on the execution time of tiled loops in relaxation codes. In our experiments, we measured the cache miss rate and the execution time of five benchmark programs on a single processor and we compared our algorithm with previous algorithms. Our algorithm achieves an average speedup of 1.27 to 1.63 over all the other algorithms.
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- 2001
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183. Drug pharmacophores covalently linked to the red cell surface are active without prior release. Drug targeting of renin with a synthetic ligand conjugated to red blood cells
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Yonghong Song, Dominique Bridon, Allen Krantz, Diane Denagel, and Christa Hartmann
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biology ,medicine.diagnostic_test ,Red Cell ,Dose-Response Relationship, Drug ,Chemistry ,Erythrocyte Membrane ,Pharmaceutical Science ,Flow Cytometry ,Ligands ,In vitro ,Antibodies ,Flow cytometry ,Blood cell ,Red blood cell ,medicine.anatomical_structure ,Drug Delivery Systems ,Targeted drug delivery ,Biochemistry ,Enzyme inhibitor ,Renin ,biology.protein ,medicine ,Pharmacophore ,Fluorescein-5-isothiocyanate - Abstract
Red blood cells have been labeled with an anti-renin pharmacophore using the activated labeling agent Boc-Phe-His-ACHPA-Ile-6-NH(CH2)5CO-NHS (4) and the corresponding sulfo-NHS-ester (5). Renin inhibition by labeled cells varies according to the concentrations of 4 or 5 used in the labeling protocols, and with the densities of the red cells employed. Flow cytometry measurements using specific polyclonal antibodies toward the anti-renin pharmacophore confirm that red cells are labeled on their outer surfaces with anti-renin pharmacophores. Inhibitory activity of labeled red cells is clearly associated with the cells themselves, and does not require prior release of an inhibitory entity: renin inhibition increases as a function of the concentration of NHS-ester used to label cells suspended in buffer, and with cell density; on the other hand, the separated supernatant portions of the medium make only minor contributions to the observed inhibitory activities. Renin inhibition also increases with increasing concentrations of ghosts derived from labeled red cells, firmly establishing that activity is intimately associated with cell membranes. Thus, the composite evidence is strongly supportive of inhibitory activity specific to the extracellular surface of red cells, which has been modified by the introduction of anti-renin pharmacophores. This study of inhibitory activity by drug/red blood cell-conjugates represents one of the few examples of a red cell-bound ligand of synthetic origin capable, without prior release, of specifically blocking the activity of its target enzyme. As well, it demonstrates the feasibility of exploiting the activity of covalently bound pharmacophores, free from interference of their carriers, for drug targeting.
- Published
- 2000
184. Modulation of the Cardiac Sarcomere by a Small Molecule Agent MYK0000461: A Potential Therapeutic for the Treatment of Genetic Hypertrophic Cardiomyopathies
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Arvinder Sran, Hector M. Rodriguez, Yonghong Song, Johan D. Oslob, Raja Kawas, and Stephanie Whitman-Cox
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Cardiac function curve ,Myosin light-chain kinase ,Biophysics ,macromolecular substances ,Biology ,Sarcomere ,Biochemistry ,Myosin ,MYH7 ,sense organs ,Myofibril ,Smooth Muscle Myosins ,Actin - Abstract
We have identified a small molecule inhibitor, MYK0000461, of the cardiac myosin ATPase. This agent was characterized in steady state and transient kinetic assays to understand its mechanism of action. MYK0000461 decreases the steady-state rate of the ATPase activity of purified bovine β-cardiac myosin subfragment-1 (S1) as well as that of bovine cardiac myofibrils, wild type and the mutant R453C of recombinant human β-cardiac myosin S1. We also find that MYK0000461 inhibits cardiac myosin selectively as compared to systems containing rabbit skeletal or chicken smooth muscle myosins Analysis of the individual steps of the chemo-mechanical cycle of cardiac myosin suggests that MYK0000461 exerts its effect by inhibiting the actin-stimulated release of phosphate, presumably by stabilizing the detached state of cardiac myosin prior to the release of phosphate. We find no evidence to suggest that MYK000461 inhibits cardiac myosin in a strongly bound state and no other steps in the chemo-mechanical cycle are affected by MYK0000461. Thus, the enzymatic step governing the weak to strong transition of S1 binding to actin is inhibited without affecting the release from the strongly bound states. This decrease in the rate of transition from the weak to strongly bound state should decrease force production and may underlie its ability to decrease cardiac contractility in cellular and in vivo models of cardiac function. An agent such as MYK0000461 could potentially be used to treat cardiac disorders that stem from hyper contractility such as the genetic hypertrophic cardiomyopathies (HCM). By decreasing the net force of contraction and restoring it back to normal level could potentially be useful in treating patients that suffer from this disease.
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- 2014
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185. Study on Chilling Requirement of Different Fruit Branch of a Sweet Cherry Cultivar ' Hongmanao'.
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Yonghong SONG, Guilin DAI, Guowei NIE, Kai LI, Yongqiang TIAN, Meijuan SHI, and Zirun CHEN
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- 2016
186. 15-OR
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Dong-Feng Chen, Yu Sun, Yonghong Song, Liang Wan, and Wendy E. Wegner
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biology ,business.industry ,Flow cytometric crossmatch ,Immunology ,General Medicine ,Human leukocyte antigen ,Prediction rate ,Antigen ,biology.protein ,Immunology and Allergy ,Medicine ,Hla antibodies ,Antibody ,Single antigen bead ,business ,Antibody screening - Abstract
Aim Solid phase immunoassays enable us to identify unacceptable donor HLA specific antigens (DSA) which allows for the prediction of compatible donor/recipient combinations. This process is referred to as the virtual crossmatch (vXM). The aim of the study was to evaluate the performance of the vXM against the final flow cytometric crossmatch (FCXM). Methods All FCXM performed in the past three years were included in this study. Flow cytometry antibody screening and Luminex single antigen bead assay (LSA) were performed to determine the presence of HLA antibodies and their specificities. MFI = 1000 was used as cutoff for LSA. A final FCXM either prospective or retrospective for the transplant recipients was performed with potential donors selected upon the vXM. Donor cells used for final crossmatch were treated with pronase. Results Total 2070 FCMX were recorded and analyzed in the study. Among these crossmatches, 1891 were vXM negative, 768 crossmatches were performed for HLA sensitized recipients with 179 positive vXM due to presence of DSA. There were total 297 positive final FCXM, of them 123 were expected and 174 (9%) were unexpected compared with the vXM results. The overall prediction rate of the final negative FCXM was 91%. The overall unexpected positive final FCXM was 8%. The majority of the unexpected final T cell positive and B cell negative FCXM became negative when the FCXM repeated with non-pronase treated donor cells. Conclusions Our vXM practice provided a >90% correct predication of negative FCXM. We could expected that the unexpected positive final FCXM mainly caused by non-HLA reactivity, for example, the pronase treatment and/or presence of antibodies not directed to HLA because the current LSA could finely define the specificities of HLA antibodies. However, it could not be excluded that the presence of anti-DP and/or DQA1 antibodies could trigger a positive B cell FCXM in cases where donors’ DP and DQA1 were not typed. This will be further investigated.
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- 2013
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187. Metabolism and Disposition of Betrixaban and Its Lack of Interaction with Major CYP Enzymes
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Todd Lorenz, Christine Ye, Athiwat Hutchaleelaha, Daniel D. Gretler, Joseph L. Lambing, and Yonghong Song
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CYP3A4 ,Metabolite ,Immunology ,CYP1A2 ,Cell Biology ,Hematology ,Urine ,Pharmacology ,Biochemistry ,chemistry.chemical_compound ,Tolbutamide ,chemistry ,Phenacetin ,Betrixaban ,medicine ,Biological half-life ,medicine.drug - Abstract
Abstract 2266 Betrixaban is a once daily oral Factor Xa inhibitor being investigated in a Phase 3 clinical trial to prevent venous thromboembolism in acute medically ill patients (APEX Study). Mass balance, metabolite profile and interaction with major CYP enzymes were evaluated in this study. Portola study 06–005 was an open-label, single-dose, mass-balance and metabolic profiling study using 14C-labeled betrixaban in 5 healthy male volunteers. Each subject received a single oral solution containing 40 mg of betrixaban labeled with 100 μCi of 14C. Blood samples were taken serially over a 168-hour interval. Urine samples and fecal samples were collected during the 7–14 day confinement period. Subjects were discharged from the unit when at least one of the following criteria were met: 90% of the radioactivity was recovered in urine and feces, daily excreted radioactivity was 1% or less of administered dose on two consecutive days, or subject reached 336 hours (14 days) post dose. The plasma concentration equivalents of total radioactivity increased rapidly following dosing with a mean peak of 31.69 ng eq/mL occurring at 3.5 hours post-dose. AUC and half-life could not be calculated as radioactivity in plasma could only be detected up to 6 hours post dose. Terminal elimination half life determined in other clinical pharmacology studies was 37 hours. Total radioactivity recovered from urine and feces was approximately 96% (range 92% to 99%), with the majority of 14C recovery in feces (82% to 89% of the dose). The 14C dose recovered in urine, composed of betrixaban and inactive metabolites, ranged from 6% to 13%. The metabolic profile of betrixaban was determined in plasma, urine and feces. Unchanged betrixaban was the predominant component found in human plasma and excreta, accounting for 85.3% of the dose excreted in urine and feces. The major biotransformation pathway for betrixaban was hydrolysis to form PRT062802 and PRT062803, a non-14C labeled metabolite (Figure 1). PRT062803 can be demethylated to form PRT062799 or hydroxylated to form PRT062982. PRT062982 is further conjugated with sulfate to form PRT063069. Both PRT062802 and PRT063069 were major circulating metabolites in human plasma with AUC of 34% and 24% that of betrixaban, respectively. PRT062802 was the only prominent metabolite detected in human urine and feces. In addition to hydrolysis metabolites, two CYP-mediated metabolites, O-desmethyl betrixaban (PRT058326) and N-desmethyl betrixaban (PRT054156), were observed in plasma at trace levels (AUC of each was 10 μM). PRT058326 and PRT054156 have an IC50 for fXa inhibition of approximately 5 nM compared to betrixaban Ki of 0.117 pM. Interaction of betrixaban with CYP enzymes was studied in vitro. CYP inhibition potential was evaluated in human liver microsomes with or without 30 minute pre-incubation of betrixaban. Selective probe substrates were used to monitor CYP activities, i.e. phenacetin for 1A2, tolbutamide for 2C9, S-mephenytoin for 2C19, dextromethorphan for 2D6, and testosterone and midazolam for 3A4. Betrixaban had IC50 > 80 μM for CYP1A2, 2C9, 2D6 and 3A4 for both competitive and time-dependent inhibition. IC50 for 2C19 were 43 and 88 μM for competitive and time-dependent inhibition, respectively. The CYP inhibition IC50's are much higher than the betrixaban therapeutic concentration of 50 nM. CYP induction by betrixaban was also studied using cryopreserved human hepatocytes (n=3). Betrixaban at 1, 10 and 25 μM were incubated in hepatocyte preparation for 48 hours. The activities for CYP1A2, CYP2C9, CYP2C19, and CYP3A4 were determined by measuring the formation of metabolites of the probe substrates similar to those used in the CYP inhibition study. CYP2C19 activities were not quantifiable in all three donors; therefore, induction for this CYP isoform could not be assessed. Betrixaban did not induce the activities of CYP1A2, CYP2C9, and CYP3A4. These results demonstrated that betrixaban was mainly excreted as the unchanged drug most likely via biliary secretion. Renal excretion and metabolism were minor elimination pathways. Betrixaban is unlikely to have drug-drug interactions with CYP-substrate, inducer, or inhibitor drugs. Disclosures: Hutchaleelaha: Portola pharmaceuticals: Employment. Ye:Portola Pharmaceuticals: Employment. Song:Portola Pharmaceuticals: Employment. Lorenz:Portola Pharmaceuticals: Employment. Gretler:Portola Pharmaceuticals: Equity Ownership. Lambing:Portola Pharmaceuticals: Employment.
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- 2012
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188. 121-P A potential novel HLA-B*35 allele identified by sequence-based typing in a potential Chinese HSCT donor
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Xiangmin Nie, Chuanfu Zhu, Yonghong Song, Yi Zhang, Yunlong Zhuang, Yan Liu, Angelica DeOliveira, Bobbie Holeman, Candace Young, Gansuvd Balgansuren, and Dong-Feng Chen
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Immunology ,Immunology and Allergy ,General Medicine - Published
- 2011
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189. Specific Inhibition of Syk Suppresses Leukocyte Immune Function and Alleviates Inflammation In Rodent Models of Rheumatoid Arthritis
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DeGuzman Francis, Yvonne Pak, David Phillips, Mayuko Inagaki, Bauer Shawn M, Suzanne M. Delaney, Stanley J. Hollenbach, Anjali Pandey, Yonghong Song, Greg Coffey, Dale Baker, Qing Xu, Andreas Betz, Uma Sinha, and Zhaozhong J. Jia
- Subjects
business.industry ,Kinase ,medicine.medical_treatment ,ZAP70 ,Immunology ,B-cell receptor ,Syk ,Cell Biology ,Hematology ,Pharmacology ,Basophil degranulation ,Biochemistry ,Cytokine ,LYN ,medicine ,business ,Protein kinase C - Abstract
Abstract 1727 Genetic ablation of Syk in hematopoietic cells blocks various leukocyte immune functions, and protects mice from immune-complex mediated inflammation. These data have helped to identify Syk as an important therapeutic target for immune-mediated diseases. The next step is to test the hypothesis that low level, and specific, pharmacological inhibition of Syk retains the immunomodulatory potential observed with Syk genetic deficiency. With this goal in mind, we provide an update on the development of P505-15, a highly specific and potent small molecule Syk inhibitor which suppresses signaling and activation of primary human and rodent leukocyte immune function. The specificity of P505-15 was tested in a panel of 270 independent purified kinase assays at 300nM. At this concentration, Syk and 8 other kinases were inhibited by ≥ 80%. Subsequent analysis demonstrated a Syk IC50 of 1nM, whereas the next most potently inhibited kinase required an IC50 of 81nM. In a variety of cellular assays we observed potent inhibition of B cell receptor (BCR) induced Syk signaling, but not of Lyn, phorbol 12-myristate 13-acetate (PMA) induced protein kinase C, T cell receptor induced Zap70, or cytokine induced JAK1 (IL6), JAK2 (GM-CSF), or JAK1/3 (IL4) dependent STAT phosphorylation. Consistently, in Ba/F3 cell lines transformed by various kinases, P505-15 only inhibited proliferation of those cells transformed by Syk (IC50 = 0.12μM), and not by Zap70 or JAK family members (IC50 > 6μM). In human whole blood, P505-15 suppressed BCR-induced Syk signaling and cellular activation with IC50's of 0.383μM and 0.362μM, respectively. FceR1-induced basophil degranulation was similarly suppressed with an IC50 of 0.171μM. Importantly, Syk-independent signaling and cellular activation in human whole blood via PMA (B cell assays) or fMLP (basophil degranulation) was unaffected by this compound at 4μM and 1μM, respectively (the highest concentrations tested), again demonstrating its specificity of action. Oral administration of P505-15 in mice led to a reversible inhibition of Syk, with an IC50 of 0.282μM as determined by an ex vivo whole blood BCR stimulation assay. Finally, we tested the immunomodulatory potential of specific Syk inhibition in vivo using rodent models of rheumatoid arthritis. Oral administration of P505-15 resulted in statistically significant and dose-dependent anti-inflammatory activity in both the mouse collagen antibody-induced arthritis and rat collagen induced arthritis models. In each case, anti-inflammatory effects were achieved at sub-micromolar plasma concentrations in which Syk specificity was maintained. These data support the hypothesis that specific Syk inhibition can modulate immune function in vivo, and provide a therapeutic strategy for the treatment of human inflammatory disease by inhibition of this kinase. P505-15 is currently being evaluated in phase I clinical trials. Disclosures: Coffey: Portola Pharmaceuticals: Employment. Francis:Portola Pharmaceuticals: Employment. Inagaki:Portola Pharmaceuticals: Employment. Pak:Portola Pharmaceuticals: Employment. Delaney:Portola Pharmaceuticals: Employment. Betz:Portola Pharmaceuticals: Employment. Jia:Portola Pharmaceuticals: Employment. Xu:Portola Pharmaceuticals: Employment. Bauer:Portola Pharmaceuticals: Employment. Song:Portola Pharmaceuticals: Employment. Pandey:Portola Pharmaceuticals: Employment. Baker:Portola Pharmaceuticals: Employment. Hollenbach:Portola Pharmaceuticals: Employment. Phillips:Portola Pharmaceuticals: Employment. Sinha:Portola Pharmaceuticals: Employment.
- Published
- 2010
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190. Specific Inhibition of Syk Is Sufficient to Disrupt Proliferation and Survival of Non-Hodgkin’s Lymphoma Cell Lines without Concomitant Inhibition of JAK
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Greg Coffey, Yonghong Song, David Phillips, Anjali Pandey, Pamela B. Conley, Zhaozhong Jia, Qing Xu, Uma Sinha, Peng Luan, Bauer Shawn M, and Suzanne M. Delaney
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Kinase ,Immunology ,Syk ,hemic and immune systems ,Tyrosine phosphorylation ,Cell Biology ,Hematology ,BCR Signaling Pathway ,environment and public health ,Biochemistry ,enzymes and coenzymes (carbohydrates) ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,LYN ,hemic and lymphatic diseases ,medicine ,Cancer research ,Phosphorylation ,Janus kinase ,B cell - Abstract
Recent studies indicate that dual inhibition of the spleen tyrosine kinase (Syk) and Janus kinases (JAK) by agents such as R788 (tamatinib fosdium) are clinically efficacious in patients with non-Hodgkin’s lymphoma. Since Syk has been implicated in B cell activation, proliferation, and survival, the present study was designed to determine whether the specific inhibition of Syk alone would suffice to disrupt proliferation and survival of lymphoma cells. To test this, a series of compounds were synthesized and screened to identify those that specifically inhibited Syk in a panel of in vitro multi-kinase assays at 300nM. Of these, three were selected for this study; compounds P459-72, P505-15, and P420-89. All three compounds inhibited purified Syk with IC50’s in the 6-43nM range. P459-72 was highly Syk specific. P505-15 also inhibited purified Lyn with an IC50 of 199nM. P420-89 inhibited multiple kinases in the BCR signaling pathway, in addition to JAK1, 2, and 3; IC50’s of 0.63-6.2nM. Assays using the non-Hodgkin’s lymphoma B cell lines Ramos, SUDHL-4 and -6 showed that each compound also inhibited BCR-induced Syk auto-phosphorylation and BLNK phosphorylation (IC50’s in the 100–400nM range) as well as subsequent Ca2+ flux and ERK phosphorylation (IC50’s in the 50–156nM range). In contrast, the activity of the Src family member Lyn, upstream of Syk in the BCR signaling pathway and responsible for Syk tyrosine phosphorylation at amino acid position 352, was not affected. Cellular proliferation was also attenuated in these lymphomas (IC50’s in the 1–5μM range), and all three compounds induced apoptosis to various extents between 1 and 3μM. Interestingly, while P505-15 did inhibit purified Lyn with an IC50 of 199nM, this did not translate into inhibition of Lyn activity upon BCR cross-linking in cells at concentrations where Syk activity was inhibited. A structurally similar compound with a greater than one hundred fold lower Syk inhibitory activity (P528-85) had no effect on the proliferation and survival of these B cell lines. Finally, the cellular effects of the Syk inhibitors required an active BCR signaling pathway, as the B cell line Toledo which lacks BCR expression was insensitive to these compounds; proliferation was inhibited with IC50’s in the 9-38μM range with no induction of apoptosis below 10μM, the highest concentration tested. Taken together, these data suggest that the specific inhibition of Syk, without concomitant inhibition of JAK, may be sufficient for the treatment of non-Hodgkin’s lymphoma.
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- 2008
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191. ChemInform Abstract: Synthesis of 3-Fluorodiaminopimelic Acid Isomers as Inhibitors of Diaminopimelate Epimerase: Stereocontrolled Enzymatic Elimination of Hydrogen Fluoride
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Yonghong Song, Michael A. Pickard, John C. Vederas, Michael H. Gelb, and Yukang Lin
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chemistry.chemical_classification ,chemistry.chemical_compound ,Diaminopimelate epimerase ,Enzyme ,chemistry ,Stereochemistry ,General Medicine ,Hydrogen fluoride - Published
- 1990
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192. A spatial FCM color quantization algorithm with pyramid data structure.
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Xiaobing Wang, Yonghong Song, and Yuanlin Zhang
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- 2011
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193. A robust inverse halftoning algorithm based on parameter estimation for AM halftone image.
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Xudong Yong, Yonghong Song, and Yuanlin Zhang
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- 2011
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194. Performance Evaluation of Evolutionary Multi-core and Aggressively Multi-threaded Processor Architectures.
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Hutchison, David, Kanade, Takeo, Kittler, Josef, Kleinberg, Jon M., Mattern, Friedemann, Mitchell, John C., Naor, Moni, Nierstrasz, Oscar, Pandu Rangan, C., Steffen, Bernhard, Sudan, Madhu, Terzopoulos, Demetri, Tygar, Doug, Vardi, Moshe Y., Weikum, Gerhard, Choi, Lynn, Yunheung Paek, Sangyeun Cho, Tirumalai, Partha, and Yonghong Song
- Abstract
Processor architecture is undergoing a significant change in response to the rapidly escalating complexities of high-power, high-frequency, and increasingly superscalar designs. Evolutionary multi-core and aggressively multi-threaded chips are appearing in the general purpose microprocessor space. The latter offer simplicity, low power, and high performance on threaded workloads but with somewhat reduced single thread performance. This paper examines the performance of the SPARC64(TM) VI, a dual-core 4-thread processor, and the UltraSPARC(TM) T1, an 8-core 32-thread processor. Numerous workloads are executed on both designs. These include single thread speed tests, homogeneous throughput tests, and multi-threaded tests using varying amounts of data and parallelism. The results indicate a clear separation in the workloads that are best suited to each design. To reap the full benefit of these multi-threaded designs, software has to be architected to use as many threads as possible. This shift is likely to affect both software developers and compiler writers for the next several years. [ABSTRACT FROM AUTHOR]
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- 2007
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195. China's New Art, Post-1989
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Chang, Tsong-zung, Xianting, Li, Ho Hing-Kay, Oscar, Sullivan, Michael, Shou-chien, Shih, Shaojun, Lang, Xiaochun, Liu, Jose, Nicholas, Ying, Yi, Barmé, Geremie, Wen, Liao, Dawei, Fei, Dal Lago, Francesca, Hantover, Jeffrey, Wear, Eric, Guangyi, Wang, Youhan, Yu, Shan, Li, Jianyi, Geng, Shanzhuan, Wu, Yongqing, Ye, Ziwei, Wang, Mengbo, Feng, Hao, Hong, Dahong, Liu, Jian, Ren, Guangqing, Wei, Wei, Guan, Youshen, Wang, Zhijie, Qiu, Haifeng, Ni, Xiaogang, Zhang, Fang, Ding, Xiaowan, Xia, Dehai, Pan, Chunya, Zhou, Xuhui, Mao, Fang, Lijun, Wei, Liu, Jingsong, Wang, Xiaodong, Liu, Haizhou, Xin, Sen, He, Peili, Zhang, Fanzhi, Zeng, Dexin, Gu, Yonghong, Song, Yongjian, Zhang, Xiatong, Shen, Jin, Cai, Jianwei, Wang, Wei, Guo, Xian, Ah, Song, Tang, Lu, Xiao, Wenda, Gu, Bing, Xu, Shengzhong, Lu, New Analysts Group, The, Qin, Shen, Yang, Shang, Chuan, Wang, Ming, Liu, Anming, Xu, Yi, Ding, Jianguo, Sui, Zhongwang, Fu, Chang, Tsong-zung, Xianting, Li, Ho Hing-Kay, Oscar, Sullivan, Michael, Shou-chien, Shih, Shaojun, Lang, Xiaochun, Liu, Jose, Nicholas, Ying, Yi, Barmé, Geremie, Wen, Liao, Dawei, Fei, Dal Lago, Francesca, Hantover, Jeffrey, Wear, Eric, Guangyi, Wang, Youhan, Yu, Shan, Li, Jianyi, Geng, Shanzhuan, Wu, Yongqing, Ye, Ziwei, Wang, Mengbo, Feng, Hao, Hong, Dahong, Liu, Jian, Ren, Guangqing, Wei, Wei, Guan, Youshen, Wang, Zhijie, Qiu, Haifeng, Ni, Xiaogang, Zhang, Fang, Ding, Xiaowan, Xia, Dehai, Pan, Chunya, Zhou, Xuhui, Mao, Fang, Lijun, Wei, Liu, Jingsong, Wang, Xiaodong, Liu, Haizhou, Xin, Sen, He, Peili, Zhang, Fanzhi, Zeng, Dexin, Gu, Yonghong, Song, Yongjian, Zhang, Xiatong, Shen, Jin, Cai, Jianwei, Wang, Wei, Guo, Xian, Ah, Song, Tang, Lu, Xiao, Wenda, Gu, Bing, Xu, Shengzhong, Lu, New Analysts Group, The, Qin, Shen, Yang, Shang, Chuan, Wang, Ming, Liu, Anming, Xu, Yi, Ding, Jianguo, Sui, and Zhongwang, Fu
- Published
- 1993
196. Monooxygenase-like activity of methemoglobin with sodium sulfite as an efficient reductant
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Chi Ming Yang, Ronald Kluger, and Yonghong Song
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biology ,Chemistry ,Stereochemistry ,Cytochrome P450 ,General Chemistry ,Protein engineering ,Flavin group ,Monooxygenase ,Biochemistry ,Catalysis ,Methemoglobin ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,biology.protein ,Sodium sulfite - Published
- 1993
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197. Production of germline chimeric chickens following the administration of a busulfan emulsion.
- Author
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Yonghong Song, Susan D'Costa, Samuel L. Pardue, and James N. Petitte
- Published
- 2005
- Full Text
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198. Processor Aware Anticipatory Prefetching in Loops.
- Author
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Kalogeropulos, S., Rajagopalan, M., Vikram Rao, Yonghong Song, and Tirumalai, P.
- Published
- 2004
- Full Text
- View/download PDF
199. A small-molecule modulator of cardiac myosin acts on multiple stages of the myosin chemomechanical cycle.
- Author
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Kawas, Raja F., Anderson, Robert L., Bartholomew Ingle, Sadie R., Yonghong Song, Sran, Arvinder S., and Rodriguez, Hector M.
- Subjects
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SMALL molecules , *MYOSIN , *HEART cells , *CARDIAC hypertrophy , *HEART diseases - Abstract
Mavacamten, formerly known as MYK-461 is a recently discovered novel small-molecule modulator of cardiac myosin that targets the underlying sarcomere hypercontractility of hypertrophic cardiomyopathy, one of the most prevalent heritable cardiovascular disorders. Studies on isolated cells and muscle fibers as well as intact animals have shown that mavacamten inhibits sarcomere force production, thereby reducing cardiac contractility. Initial mechanistic studies have suggested that mavacamten primarily reduces the steady-state ATPase activity by inhibiting the rate of phosphate release ofβ-cardiac myosin- S1, but the molecular mechanism of action of mavacamten has not been described. Here we used steady-state and presteadystate kinetic analyses to investigate the mechanism of action of mavacamten. Transient kinetic analyses revealed that mavacamten modulates multiple steps of the myosin chemomechanical cycle. In addition to decreasing the rate-limiting step of the cycle (phosphate release), mavacamten reduced the number of myosin-S1 heads that can interact with the actin thin filament during transition from the weakly to the strongly bound state without affecting the intrinsic rate. Mavacamten also decreased the rate of myosin binding to actin in the ADP-bound state and the ADP-release rate from myosin-S1 alone. We, therefore, conclude that mavacamten acts on multiple stages of the myosin chemomechanical cycle. Although the primary mechanism of mavacamten-mediated inhibition of cardiac myosin is the decrease of phosphate release from β-cardiac myosin-S1, a secondary mechanism decreases the number of actin-binding heads transitioning from the weakly to the strongly bound state, which occurs before phosphate release and may provide an additional method to modulate myosin function. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
200. 2024 Medicinal Chemistry Reviews
- Author
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Thomas A. Baillie, Andrew G. Capacci, Nick A. Paras, Karin Worm, James L. Carr, Mia C. Callens, Ethan Chidlow, Tryfon Zarganes-Tzitzikas, Katherine S. England, Paul E. Brennan, Yonghong Song, Nicholas Wurtz, Kevin J. Filipski, Kentaro Futatsugi, Robert Dullea, Michelle R. Garnsey, Daniel J. Smaltz, Matthew M. Weiss, Jack A. Terrett, Huifen Chen, Marion Lanier, Samantha Evans, Gregory Williams, Joshua Wollam, Debra Brennan, Yufan Liang, Scott Mlynarski, Bing-Yan Zhu, David J. St. Jean, Trang Tieu, Angel Guzman-Perez, Alexander M. Taylor, Linjie Li, Chenxi Wang, Liuzhi Hu, Xiaowu Dong, Jinxin Che, Andrew S. Bell, James A. Brannigan, Kevin X. Rodriguez, Isaac D. Falk, Bradley T. Reid, Greta Klejborowska, Camilla Scarpellini, Caroline Lanthier, Koen Augustyns, Benjamin D. Sellers, Brian R. Hearn, Katerina Leftheris*, Jennifer X. Qiao, Abdellatif El Marrouni, Abbas Walji, Matthew A. Marx, Jill Hallin, James Christensen, Brad Fell, David W. Lin, Megan Armstrong, Jennifer Jiang, Juan del Pozo, Christiana N. Teijaro, Erika Araujo, Björn Bartels, Ian M. Be, Thomas A. Baillie, Andrew G. Capacci, Nick A. Paras, Karin Worm, James L. Carr, Mia C. Callens, Ethan Chidlow, Tryfon Zarganes-Tzitzikas, Katherine S. England, Paul E. Brennan, Yonghong Song, Nicholas Wurtz, Kevin J. Filipski, Kentaro Futatsugi, Robert Dullea, Michelle R. Garnsey, Daniel J. Smaltz, Matthew M. Weiss, Jack A. Terrett, Huifen Chen, Marion Lanier, Samantha Evans, Gregory Williams, Joshua Wollam, Debra Brennan, Yufan Liang, Scott Mlynarski, Bing-Yan Zhu, David J. St. Jean, Trang Tieu, Angel Guzman-Perez, Alexander M. Taylor, Linjie Li, Chenxi Wang, Liuzhi Hu, Xiaowu Dong, Jinxin Che, Andrew S. Bell, James A. Brannigan, Kevin X. Rodriguez, Isaac D. Falk, Bradley T. Reid, Greta Klejborowska, Camilla Scarpellini, Caroline Lanthier, Koen Augustyns, Benjamin D. Sellers, Brian R. Hearn, Katerina Leftheris*, Jennifer X. Qiao, Abdellatif El Marrouni, Abbas Walji, Matthew A. Marx, Jill Hallin, James Christensen, Brad Fell, David W. Lin, Megan Armstrong, Jennifer Jiang, Juan del Pozo, Christiana N. Teijaro, Erika Araujo, Björn Bartels, and Ian M. Be
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