222 results on '"Paracchini S"'
Search Results
52. A clinal pattern of human Y chromosome diversity in North Africa
- Author
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Arredi, B, Poloni, E, Paracchini, S, Zerjal, T, Fathallah, D, Makrelouf, M, Novelletto, A, and Tyler-Smith, C
- Published
- 2004
53. Common variants in left/right asymmetry genes and pathways are associated with relative hand skill
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Brandler, W.M., Morris, A.P., Evans, D.M., Scerri, T.S., Kemp, J.P., Timpson, N.J., Pourcain, B. St, Smith, G.D., Ring, S.M., Stein, J., Monaco, A.P., Talcott, J.B., Fisher, S.E., Webber, C., Paracchini, S., Brandler, W.M., Morris, A.P., Evans, D.M., Scerri, T.S., Kemp, J.P., Timpson, N.J., Pourcain, B. St, Smith, G.D., Ring, S.M., Stein, J., Monaco, A.P., Talcott, J.B., Fisher, S.E., Webber, C., and Paracchini, S.
- Abstract
Contains fulltext : 122877.pdf (publisher's version ) (Open Access)
- Published
- 2013
54. Y-chromosomal DNA haplotypes in infertile European males carrying Y-microdeletions (vol 23, pg 671, 2000)
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Paracchini, S, Stuppia, L, Gatta, V, Palka, G, Moro, Enrico, Foresta, Carlo, Mengua, L, Oliva, R, Ballesca, Jl, Kremer, Jam, VAN GOLDE RJT, Tuerlings, Jham, Ross, A, Cooke, H, Huellen, K, Vogt, Ph, and TYLER SMITH, C.
- Published
- 2001
55. Investigation of dyslexia and SLI risk variants in reading- and language-impaired subjects
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Newbury, D.F., Paracchini, S., Scerri, T.S., Winchester, L., Addis, L., Richardson, A.J., Walter, J., Stein, J.F., Talcott, J.B., Monaco, A.P., Newbury, D.F., Paracchini, S., Scerri, T.S., Winchester, L., Addis, L., Richardson, A.J., Walter, J., Stein, J.F., Talcott, J.B., and Monaco, A.P.
- Abstract
Dyslexia (or reading disability) and specific language impairment (or SLI) are common childhood disorders that show considerable co-morbidity and diagnostic overlaps and have been suggested to share some genetic aetiology. Recently, genetic risk variants have been identified for SLI and dyslexia enabling the direct evaluation of possible shared genetic influences between these disorders. In this study we investigate the role of variants in these genes (namely MRPL19/C20RF3, ROBO1, DCDC2, KIAA0319, DYX1C1, CNTNAP2, ATP2C2 and CMIP) in the aetiology of SLI and dyslexia. We perform case–control and quantitative association analyses using measures of oral and written language skills in samples of SLI and dyslexic families and cases. We replicate association between KIAA0319 and DCDC2 and dyslexia and provide evidence to support a role for KIAA0319 in oral language ability. In addition, we find association between reading-related measures and variants in CNTNAP2 and CMIP in the SLI families.
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- 2011
56. Analysis of dyslexia candidate genes in the Raine cohort representing the general Australian population
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Paracchini, S, Ang, QW, Stanley, FJ, Monaco, AP, Pennell, CE, Whitehouse, AJO, Paracchini, S, Ang, QW, Stanley, FJ, Monaco, AP, Pennell, CE, and Whitehouse, AJO
- Abstract
Several genes have been suggested as dyslexia candidates. Some of these candidate genes have been recently shown to be associated with literacy measures in sample cohorts derived from the general population. Here, we have conducted an association study in a novel sample derived from the Australian population (the Raine cohort) to further investigate the role of dyslexia candidate genes. We analysed markers, previously reported to be associated with dyslexia, located within the MRPL19/C2ORF3, KIAA0319, DCDC2 and DYX1C1 genes in a sample of 520 individuals and tested them for association with reading and spelling measures. Association signals were detected for several single nucleotide polymorphisms (SNPs) within DYX1C1 with both the reading and spelling tests. The high linkage disequilibrium (LD) we observed across the DYX1C1 gene suggests that the association signal might not be refined by further genetic mapping.
- Published
- 2011
57. A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa
- Author
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Arredi, Barbara, Poloni, E, Paracchini, S, Zerjal, Tatiana, Fathallah, Dm, Makrelouf, M, Pascali, Vincenzo Lorenzo, Novelletto, A, Tyler Smith, C., Poloni, Es, Pascali, Vincenzo Lorenzo (ORCID:0000-0001-6520-5224), Arredi, Barbara, Poloni, E, Paracchini, S, Zerjal, Tatiana, Fathallah, Dm, Makrelouf, M, Pascali, Vincenzo Lorenzo, Novelletto, A, Tyler Smith, C., Poloni, Es, and Pascali, Vincenzo Lorenzo (ORCID:0000-0001-6520-5224)
- Abstract
We have typed 275 men from five populations in Algeria, Tunisia, and Egypt with a set of 119 binary markers and 15 microsatellites from the Y chromosome, and we have analyzed the results together with published data from Moroccan populations. North African Y-chromosomal diversity is geographically structured and fits the pattern expected under an isolation-by-distance model. Autocorrelation analyses reveal an east-west cline of genetic variation that extends into the Middle East and is compatible with a hypothesis of demic expansion. This expansion must have involved relatively small numbers of Y chromosomes to account for the reduction in gene diversity towards the West that accompanied the frequency increase of Y haplogroup E3b2, but gene flow must have been maintained to explain the observed pattern of isolation-by-distance. Since the estimates of the times to the most recent common ancestor (TMRCAs) of the most common haplogroups are quite recent, we suggest that the North African pattern of Y-chromosomal variation is largely of Neolithic origin. Thus, we propose that the Neolithic transition in this part of the world was accompanied by demic diffusion of Afro-Asiatic-speaking pastoralists from the Middle East.
- Published
- 2004
58. Investigation of Dyslexia and SLI Risk Variants in Reading- and Language-Impaired Subjects
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Newbury, D. F., primary, Paracchini, S., additional, Scerri, T. S., additional, Winchester, L., additional, Addis, L., additional, Richardson, Alex J., additional, Walter, J., additional, Stein, J. F., additional, Talcott, J. B., additional, and Monaco, A. P., additional
- Published
- 2010
- Full Text
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59. Analysis of dyslexia candidate genes in the Raine cohort representing the general Australian population
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Paracchini, S., primary, Ang, Q. W., additional, Stanley, F. J., additional, Monaco, A. P., additional, Pennell, C. E., additional, and Whitehouse, A. J. O., additional
- Published
- 2010
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60. Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry
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Paracchini, S., primary
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- 2002
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61. The genetic relationship between handedness and neurodevelopmental disorders
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Brandler, W, Paracchini, S, University of St Andrews. School of Medicine, and University of St Andrews. Biomedical Sciences Research Complex
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Corpus callosum ,QH426 Genetics ,Review ,Functional Laterality ,Dyslexia ,corpus callosum ,handedness ,Central Nervous System Diseases ,dyslexia ,mental disorders ,cerebral asymmetry ,Animals ,Humans ,Genetic Predisposition to Disease ,Cilia ,QH426 ,Molecular Biology ,Handedness ,Ciliogenesis ,Genetics (medical sciences) ,Serine Endopeptidases ,respiratory system ,schizophrenia ,Cerebral asymmetry ,Schizophrenia ,Molecular Medicine ,Proprotein Convertases ,ciliogenesis ,Neuroscience - Abstract
Highlights • Genes controlling left/right (LR) body asymmetry also influence handedness. • Some genes associated with handedness or dyslexia are expressed in cilia. • Cilia defects lead to both LR body asymmetry and brain midline phenotypes. • Cilia may play a role in brain midline development, handedness, and dyslexia., Handedness and brain asymmetry have been linked to neurodevelopmental disorders such as dyslexia and schizophrenia. The genetic nature of this correlation is not understood. Recent discoveries have shown handedness is determined in part by the biological pathways that establish left/right (LR) body asymmetry during development. Cilia play a key role in this process, and candidate genes for dyslexia have also been recently shown to be involved in cilia formation. Defective cilia result not only in LR body asymmetry phenotypes but also brain midline phenotypes such as an absent corpus callosum. These findings suggest that the mechanisms for establishing LR asymmetry in the body are reused for brain midline development, which in turn influences traits such as handedness and reading ability.
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62. The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts
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Robert Shore, Covill L, Ka, Pettigrew, Wm, Brandler, Diaz R, Xu Y, Ja, Tello, Jb, Talcott, Df, Newbury, Stein J, Ap, Monaco, and Paracchini S
63. ChemInform Abstract: NEW METHOD FOR THE PARTIAL SYNTHESIS OF VINCAMINE AND RELATED INDOLE ALKALOIDS
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PARACCHINI, S., primary and PESCE, E., additional
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- 1978
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64. Comparison of two 'a priori' risk assessment algorithms for preeclampsia in Italy: a prospective multicenter study
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Nicola Rizzo, Chiara Germano, Federico Prefumo, Tullia Todros, Paolo Cavoretto, Massimo Candiani, Veronica Giorgione, F. Fuse, Antonio Farina, Danila Morano, Benedetta Bracco, L. Cariello, Giulia Parpinel, Sara Paracchini, Flavia Girlando, Daniela Di Martino, Bianca Masturzo, Di Martino, D., Masturzo, B., Paracchini, S., Bracco, B., Cavoretto, P., Prefumo, F., Germano, C., Morano, D., Girlando, F., Giorgione, V., Parpinel, G., Cariello, L., Fuse, F., Candiani, M., Todros, T., Rizzo, N., Farina, A., Di Martino D., Masturzo B., Paracchini S., Bracco B., Cavoretto P., Prefumo F., Germano C., Morano D., Girlando F., Giorgione V., Parpinel G., Cariello L., Fuse F., Candiani M., Todros T., Rizzo N., and Farina A.
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Adult ,ROC curves ,Risk Assessment ,Preeclampsia ,03 medical and health sciences ,0302 clinical medicine ,Pre-Eclampsia ,Pregnancy ,Risk Factors ,A priori risk ,Detection rate ,Screening for preeclampsia ,Algorithms ,Biomarkers ,Female ,Humans ,Italy ,Prospective Studies ,medicine ,Prospective cohort study ,030219 obstetrics & reproductive medicine ,Receiver operating characteristic ,business.industry ,Obstetrics and Gynecology ,General Medicine ,medicine.disease ,ROC curve ,030220 oncology & carcinogenesis ,Gestation ,Population study ,False positive rate ,business ,Risk assessment ,Algorithm - Abstract
Purpose: To compare the performance of the algorithms proposed by the Fetal Medicine Foundation in 2012 and BCNatal in 2013 in an Italian population. Methods: A multicentric prospective study was carried out which included pregnancies at 11–13weeks’ gestation from Jan 2014 through May 2017. Two previously published algorithms were used for the calculation of the “a priori” risk of preeclampsia (based on risk factors from medical history) in each individual. Results: In a study population of 11,632 cases, 67 (0.6%) developed early preeclampsia and 211 (1.8%) developed late preeclampsia. The detection rates (95% CI) for early and late preeclampsia were 58.2% (45.5–70.2) vs. 41.8% (29.6–54.5) (p value < 0.05) and 44.1% (37.3–51.1) vs. 38% (31.3–44.8) (p value < 0.05) for the Fetal Medicine Foundation and BCNatal, respectively (at a 10% false positive rate). The associated risk was 1:226 and 1:198 (p value ns) for early PE, and 1:17 and 1:24 (p value ns) for late PE for the Fetal Medicine Foundation and BCNatal, respectively. Conclusions: The Fetal Medicine Foundation screening for preeclampsia at 11–13weeks’ gestation scored the highest detection rate for both early and late PE. At a fixed 10% false positive rate, the estimated “a priori” risks of both the Fetal Medicine Foundation and the BCNatal algorithms in an Italian population were quite similar, and both were reliable and consistent.
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- 2019
65. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study)
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Alessandro Buda, Giampaolo Di Martino, Martina Borghese, Stefano Restaino, Alessandra Surace, Andrea Puppo, Sara Paracchini, Debora Ferrari, Stefania Perotto, Antonia Novelli, Elena De Ponti, Chiara Borghi, Francesco Fanfani, Robert Fruscio, Buda, A, Di Martino, G, Borghese, M, Restaino, S, Surace, A, Puppo, A, Paracchini, S, Ferrari, D, Perotto, S, Novelli, A, De Ponti, E, Borghi, C, Fanfani, F, and Fruscio, R
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Settore MED/40 - GINECOLOGIA E OSTETRICIA ,laparoscopy ,endometrial cancer ,low-pressure insufflation ,postoperative pain ,Health Information Management ,Leadership and Management ,Health Policy ,Health Informatics - Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8–10 mmHg, n = 84) or standard laparoscopic insufflation (10–12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
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- 2022
66. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism
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Antonia Tranchina, Christian Bergamini, Irene Liparulo, Francesca Bianco, Vito Antonio Baldassarro, Francesco Buscherini, Chiara Diquigiovanni, Luca Masin, Nicola Rizzardi, Romana Fato, Marco Seri, Elena Bonora, Rebeca Diaz, Emanuela Scarano, Duccio Maria Cordelli, Tommaso Pippucci, Silvia Paracchini, Anita Wischmeijer, Diquigiovanni C., Bergamini C., Diaz R., Liparulo I., Bianco F., Masin L., Baldassarro V.A., Rizzardi N., Tranchina A., Buscherini F., Wischmeijer A., Pippucci T., Scarano E., Cordelli D.M., Fato R., Seri M., Paracchini S., Bonora E., University of St Andrews. School of Medicine, University of St Andrews. Centre for Biophotonics, University of St Andrews. Cellular Medicine Division, and University of St Andrews. Biomedical Sciences Research Complex
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Male ,0301 basic medicine ,Mitochondrial Diseases ,QH301 Biology ,Cell Cycle Proteins ,Mitochondrion ,medicine.disease_cause ,Biochemistry ,0302 clinical medicine ,Spastic ,Child ,R2C ,Genetics ,Spartin ,Mutation ,~DC~ ,musculoskeletal system ,Mitochondria ,mitochondria ,medicine.symptom ,BDC ,RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry ,Biotechnology ,Spg20 ,Calcium ,Cell Line ,Electron Transport Complex I ,Endosomes ,Humans ,NAD ,NADH Dehydrogenase ,Neurodevelopmental Disorders ,Pyruvates ,NDAS ,QH426 Genetics ,Troyer syndrome ,Short stature ,QH301 ,03 medical and health sciences ,medicine ,QH426 ,Molecular Biology ,Gene ,business.industry ,Muscle weakness ,nervous system diseases ,030104 developmental biology ,RC0321 ,business ,030217 neurology & neurosurgery ,Oxidative stress - Abstract
Loss-of-function mutations in the SPART gene cause Troyer syndrome, a recessive form of spastic paraplegia resulting in muscle weakness, short stature, and cognitive defects. SPART encodes for Spartin, a protein linked to endosomal trafficking and mitochondrial membrane potential maintenance. Here, we identified with whole exome sequencing (WES) a novel frameshift mutation in the SPART gene in 2 brothers presenting an uncharacterized developmental delay and short stature. Functional characterization in an SH-SY5Y cell model shows that this mutation is associated with increased neurite outgrowth. These cells also show a marked decrease in mitochondrial complex I (NADH dehydrogenase) activity, coupled to decreased ATP synthesis and defective mitochondrial membrane potential. The cells also presented an increase in reactive oxygen species, extracellular pyruvate, and NADH levels, consistent with impaired complex I activity. In concordance with a severe mitochondrial failure, Spartin loss also led to an altered intracellular Ca2+ homeostasis that was restored after transient expression of wild-type Spartin. Our data provide for the first time a thorough assessment of Spartin loss effects, including impaired complex I activity coupled to increased extracellular pyruvate. In summary, through a WES study we assign a diagnosis of Troyer syndrome to otherwise undiagnosed patients, and by functional characterization we show that the novel mutation in SPART leads to a profound bioenergetic imbalance.-Diquigiovanni, C., Bergamini, C., Diaz, R., Liparulo, I., Bianco, F., Masin, L., Baldassarro, V. A., Rizzardi, N., Tranchina, A., Buscherini, F., Wischmeijer, A., Pippucci, T., Scarano, E., Cordelli, D. M., Fato, R., Seri, M., Paracchini, S., Bonora, E. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism.
- Published
- 2019
67. Characterization of a family with rare deletions in CNTNAP5 and DOCK4 suggests novel risk loci for autism and dyslexia
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Wouter G. Staal, Gerd Schulte-Körne, Thomas S. Scerri, Fritz Poustka, Panos Deloukas, Anthony P. Monaco, Roel A. Ophoff, Per Hoffmann, Denise Harold, Anthony J. Bailey, Ernesto Lowy, Kerstin U. Ludwig, Jiannis Ragoussis, Maretha de Jonge, Elena Bacchelli, Michael Conlon O'Donovan, Markus M. Nöthen, Ghazala Mirza, Alistair T. Pagnamenta, Silvia Paracchini, Julie Williams, Elena Maestrini, Andreas G. Chiocchetti, Renske H. Houben, Sabine M. Klauck, Fiorella Minopoli, Jade Chapman, Pagnamenta AT, Bacchelli E, de Jonge MV, Mirza G, Scerri TS, Minopoli F, Chiocchetti A, Ludwig KU, Hoffmann P, Paracchini S, Lowy E, Harold DH, Chapman JA, Klauck SM, Poustka F, Houben RH, Staal WG, Ophoff RA, O'Donovan MC, Williams J, Nöthen MM, Schulte-Körne G, Deloukas P, Ragoussis J, Bailey AJ, Maestrini E, Monaco AP, and International Molecular Genetic Study Of Autism Consortium
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Adult ,Male ,Transcription, Genetic ,Cell Adhesion Molecules, Neuronal ,CNV ,CNTNAP5 ,Single-nucleotide polymorphism ,Autistic ,Polymorphism, Single Nucleotide ,Severity of Illness Index ,Dyslexia ,neurexin ,03 medical and health sciences ,0302 clinical medicine ,Reference Values ,mental disorders ,medicine ,SNP ,Missense mutation ,Humans ,Child ,Biological Psychiatry ,030304 developmental biology ,Sequence Deletion ,Genetics ,0303 health sciences ,GTPase-Activating Proteins ,DOCK4 ,DNA ,Middle Aged ,medicine.disease ,Pedigree ,Developmental disorder ,Fusion transcript ,Gene Expression Regulation ,Child Development Disorders, Pervasive ,Case-Control Studies ,Child, Preschool ,Autism ,Female ,Psychology ,030217 neurology & neurosurgery ,SNP array - Abstract
Background: Autism spectrum disorders (ASDs) are characterized by social, communication, and behavioral deficits and complex genetic etiology. A recent study of 517 ASD families implicated DOCK4 by single nucleotide polymorphism (SNP) association and a microdeletion in an affected sibling pair. Methods: The DOCK4 microdeletion on 7q31.1 was further characterized in this family using QuantiSNP analysis of 1M SNP array data and reverse transcription polymerase chain reaction. Extended family members were tested by polymerase chain reaction amplification of junction fragments. DOCK4 dosage was measured in additional samples using SNP arrays. Since QuantiSNP analysis identified a novel CNTNAP5 microdeletion in the same affected sibling pair, this gene was sequenced in 143 additional ASD families. Further polymerase chain reaction-restriction fragment length polymorphism analysis included 380 ASD cases and suitable control subjects. Results: The maternally inherited microdeletion encompassed chr7:110,663,978-111,257,682 and led to a DOCK4-IMMP2L fusion transcript. It was also detected in five extended family members with no ASD. However, six of nine individuals with this microdeletion had poor reading ability, which prompted us to screen 606 other dyslexia cases. This led to the identification of a second DOCK4 microdeletion co-segregating with dyslexia. Assessment of genomic background in the original ASD family detected a paternal 2q14.3 microdeletion disrupting CNTNAP5 that was also transmitted to both affected siblings. Analysis of other ASD cohorts revealed four additional rare missense changes in CNTNAP5. No exonic deletions of DOCK4 or CNTNAP5 were seen in 2091 control subjects. Conclusions: This study highlights two new risk factors for ASD and dyslexia and demonstrates the importance of performing a highresolution assessment of genomic background, even after detection of a rare and likely damaging microdeletion using a targeted approach.
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- 2009
68. A GWAS for grip strength in cohorts of children-Advantages of analysing young participants for this trait.
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Abbondanza F, Wang CA, Schmitz J, Marianski K, Pennell CE, Whitehouse AJO, and Paracchini S
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- Humans, Male, Female, Child, Adolescent, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Cohort Studies, Hand Strength, Genome-Wide Association Study methods
- Abstract
Grip strength (GS) is a proxy measure for muscular strength and a predictor for bone fracture risk among other diseases. Previous genome-wide association studies (GWASs) have been conducted in large cohorts of adults focusing on scores collected for the dominant hand, therefore increasing the likelihood of confounding effects by environmental factors. Here, we perform the first GWAS meta-analyses on maximal GS with the dominant (GSD) and non-dominant (GSND) hand in two cohorts of children (ALSPAC, N = 5450; age range = 10.65-13.61; Raine Study, N = 1162, age range: 9.42-12.38 years). We identified a novel significant association for GSND (rs9546244, LINC02465, p = 3.43e-08) and replicated associations previously reported in adults including with a HOXB3 gene marker that shows an expression quantitative trait locus (eQTL) effect. Despite a much smaller sample (~3%) compared with the UK Biobank we replicated correlation analyses previously reported in this much larger adult cohort, such as a negative correlation with coronary artery disease. Although the results from the polygenic risk score (PRS) analyses did not survive multiple testing correction, we observed nominally significant associations between GS and risk of overall fracture, as previously reported, as well ADHD which will require further investigations. Finally, we observed a higher SNP-heritability (24%-41%) compared with previous studies (4%-24%) in adults. Overall, our results suggest that cohorts of children might be better suited for genetic studies of grip strength, possibly due to the shorter exposure to confounding environmental factors compared with adults., (© 2024 The Author(s). Genes, Brain and Behavior published by International Behavioural and Neural Genetics Society and John Wiley & Sons Ltd.)
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- 2024
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69. Kin selection as a modulator of human handedness: sex-specific, parental and parent-of-origin effects.
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Dong B, Paracchini S, and Gardner A
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The frequency of left-handedness in humans is ~10% worldwide and slightly higher in males than females. Twin and family studies estimate the heritability of human handedness at around 25%. The low but substantial frequency of left-handedness has been suggested to imply negative frequency-dependent selection, e.g. owing to a 'surprise' advantage of left-handers in combat against opponents more used to fighting right-handers. Because such game-theoretic hypotheses involve social interaction, here we perform an analysis of the evolution of handedness based on kin-selection, which is understood to play a major role in the evolution of social behaviour generally. We show that: (1) relatedness modulates the balance of right-handedness vs. left-handedness, according to whether left-handedness is marginally selfish vs. marginally altruistic; (2) sex differences in relatedness to social partners may drive sex differences in handedness; (3) differential relatedness of parents and offspring may generate parent-offspring conflict and sexual conflict leading to the evolution of maternal and paternal genetic effects in relation to handedness; and (4) differential relatedness of maternal-origin vs. paternal-origin genes may generate intragenomic conflict leading to the evolution of parent-of-origin-specific gene effects - such as 'genomic imprinting' - and associated maladaptation., Competing Interests: None., (© The Author(s) 2024.)
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- 2024
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70. A genome-wide association study of Chinese and English language phenotypes in Hong Kong Chinese children.
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Lin YP, Shi Y, Zhang R, Xue X, Rao S, Yin L, Lui KFH, Pan DJ, Maurer U, Choy KW, Paracchini S, McBride C, and So HC
- Abstract
Dyslexia and developmental language disorders are important learning difficulties. However, their genetic basis remains poorly understood, and most genetic studies were performed on Europeans. There is a lack of genome-wide association studies (GWAS) on literacy phenotypes of Chinese as a native language and English as a second language (ESL) in a Chinese population. In this study, we conducted GWAS on 34 reading/language-related phenotypes in Hong Kong Chinese bilingual children (including both twins and singletons; total N = 1046). We performed association tests at the single-variant, gene, and pathway levels. In addition, we tested genetic overlap of these phenotypes with other neuropsychiatric disorders, as well as cognitive performance (CP) and educational attainment (EA) using polygenic risk score (PRS) analysis. Totally 5 independent loci (LD-clumped at r
2 = 0.01; MAF > 0.05) reached genome-wide significance (p < 5e-08; filtered by imputation quality metric Rsq>0.3 and having at least 2 correlated SNPs (r2 > 0.5) with p < 1e-3). The loci were associated with a range of language/literacy traits such as Chinese vocabulary, character and word reading, and rapid digit naming, as well as English lexical decision. Several SNPs from these loci mapped to genes that were reported to be associated with EA and other neuropsychiatric phenotypes, such as MANEA and PLXNC1. In PRS analysis, EA and CP showed the most consistent and significant polygenic overlap with a variety of language traits, especially English literacy skills. To summarize, this study revealed the genetic basis of Chinese and English abilities in a group of Chinese bilingual children. Further studies are warranted to replicate the findings., (© 2024. The Author(s).)- Published
- 2024
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71. Auditory Cortex Asymmetry Associations with Individual Differences in Language and Cognition.
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Eckert MA, Vaden KI Jr, and Paracchini S
- Abstract
A longstanding cerebral lateralization hypothesis predicts that disrupted development of typical leftward structural asymmetry of auditory cortex explains why children have problems learning to read. Small sample sizes and small effects, potential sex-specific effects, and associations that are limited to specific dimensions of language are thought to have contributed inconsistent results. The large ABCD study dataset (baseline visit: N = 11,859) was used to test the hypothesis of significant associations between surface area asymmetry of auditory cortex and receptive vocabulary performance across boys and girls, as well as an oral word reading effect that was specific to boys. The results provide modest support (Cohen's d effect sizes ≤ 0.10) for the cerebral lateralization hypothesis.
- Published
- 2023
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72. Elevated levels of mixed-hand preference in dyslexia: Meta-analyses of 68 studies.
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Packheiser J, Papadatou-Pastou M, Koufaki A, Paracchini S, Stein CC, Schmitz J, and Ocklenburg S
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- Humans, Hand, MEDLINE, Odds Ratio, Functional Laterality, Dyslexia
- Abstract
Since almost a hundred years, psychologists have investigated the link between hand preference and dyslexia. We present a meta-analysis to determine whether there is indeed an increase in atypical hand preference in dyslexia. We included studies used in two previous meta-analyses (Bishop, 1990; Eglinton & Annett, 1994) as well as studies identified through PubMed MEDLINE, PsycInfo, Google Scholar, and Web of Science up to August 2022. K = 68 studies (n = 4660 individuals with dyslexia; n = 40845 controls) were entered into three random effects meta-analyses using the odds ratio as the effect size (non-right-handers; left-handers; mixed-handers vs. total). Evidence of elevated levels of atypical hand preference in dyslexia emerged that were especially pronounced for mixed-hand preference (OR = 1.57), although this category was underdefined. Differences in (direction or degree) of hand skill or degree of hand preference could not be assessed as no pertinent studies were located. Our findings allow for robust conclusions only for a relationship of mixed-hand preference with dyslexia., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2023
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73. Dyslexia-related loci are significantly associated with language and literacy in Chinese-English bilingual Hong Kong Chinese twins.
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Chung CY, Pan DJ, Paracchini S, Jiang W, So HC, McBride C, Maurer U, Zheng M, and Choy KW
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- Adult, Humans, East Asian People, Genome-Wide Association Study, Hong Kong, Language, Membrane Proteins, Nerve Tissue Proteins genetics, Literacy, Dyslexia genetics
- Abstract
A recent genome-wide association study on dyslexia in 51,800 affected European adults and 1,087,070 controls detected 42 genome-wide significant single nucleotide variants (SNPs). The association between rs2624839 in SEMA3F and reading fluency was replicated in a Chinese cohort. This study explores the genetic overlap between Chinese and English word reading, vocabulary knowledge and spelling, and aims at replicating the association in a unique cohort of bilingual (Chinese-English) Hong Kong Chinese twins. Our result showed an almost complete genetic overlap in vocabulary knowledge (r
2 = 0.995), and some genetic overlaps in word reading and spelling (r2 = 0.846, 0.687) across the languages. To investigate the region near rs2624839, we tested proxy SNPs (rs1005678, rs12632110 and rs12494414) at the population level (n = 305-308) and the within-twin level (n = 342-344 [171-172 twin pairs]). All the three SNPs showed significant associations with quantitative Chinese and English vocabulary knowledge (p < 0.05). The strongest association after multiple testing correction was between rs12494414 and English vocabulary knowledge at the within-twin level (p = 0.004). There was a trend of associations with word reading and spelling in English but not in Chinese. Our result suggested that the region near rs2624839 is one of the common genetic factors across English and Chinese vocabulary knowledge and unique factors of English word reading and English spelling in bilingual Chinese twins. A larger sample size is required to validate our findings. Further studies on the relationship between variable expression of SEMA3F, which is important to neurodevelopment, and language and literacy are encouraged., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2023
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74. Identification of loci involved in childhood visual acuity and associations with cognitive skills and educational attainment.
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Schmitz J, Abbondanza F, Marianski K, Luciano M, and Paracchini S
- Abstract
Visual acuity significantly contributes to quality of life. Deficits in childhood are associated with reading difficulties, which can have detrimental effects on education outcomes. In adults, it has been observed that vision defects such as myopia are associated with higher educational attainment (EA). Understanding genetic factors contributing to visual acuity could help to dissect its links with cognitive skills, neurodevelopmental conditions, and education. We examined associations between distance visual acuity, cognitive measures including school grades, and neurodevelopmental conditions in a longitudinal cohort of British children (ALSPAC, n = 6807, M age = 11.8). We performed a genome-wide association study (GWAS, n = 5571) on visual acuity and tested for genetic associations with relevant phenotypes using polygenic scores (PGS) and genetic correlation analyses. Visual acuity was associated with better cognitive performance and school grades, and reduced in individuals with reading difficulties compared to controls. GWAS revealed genetic associations at the NPLOC4 locus and highlighted other genes involved in sensory function. In line with positive genetic correlations between visual acuity and cognitive measures, EA PGS were positively associated with visual acuity, while there was a less robust negative association with myopia PGS. In conclusion, increased visual acuity is associated with a range of positive outcomes, including better school grades. Our results suggest an association between a higher EA PGS and slightly increased visual acuity in childhood. This could indicate gene-environment correlation, in which environmental exposures linked to higher EA might have detrimental effects on vision offsetting the initial positive effect., (© 2023. The Author(s).)
- Published
- 2023
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75. Language and reading impairments are associated with increased prevalence of non-right-handedness.
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Abbondanza F, Dale PS, Wang CA, Hayiou-Thomas ME, Toseeb U, Koomar TS, Wigg KG, Feng Y, Price KM, Kerr EN, Guger SL, Lovett MW, Strug LJ, van Bergen E, Dolan CV, Tomblin JB, Moll K, Schulte-Körne G, Neuhoff N, Warnke A, Fisher SE, Barr CL, Michaelson JJ, Boomsma DI, Snowling MJ, Hulme C, Whitehouse AJO, Pennell CE, Newbury DF, Stein J, Talcott JB, Bishop DVM, and Paracchini S
- Subjects
- Humans, Child, Adolescent, Young Adult, Adult, Prevalence, Language, Brain, Functional Laterality, Reading
- Abstract
Handedness has been studied for association with language-related disorders because of its link with language hemispheric dominance. No clear pattern has emerged, possibly because of small samples, publication bias, and heterogeneous criteria across studies. Non-right-handedness (NRH) frequency was assessed in N = 2503 cases with reading and/or language impairment and N = 4316 sex-matched controls identified from 10 distinct cohorts (age range 6-19 years old; European ethnicity) using a priori set criteria. A meta-analysis (N
cases = 1994) showed elevated NRH % in individuals with language/reading impairment compared with controls (OR = 1.21, CI = 1.06-1.39, p = .01). The association between reading/language impairments and NRH could result from shared pathways underlying brain lateralization, handedness, and cognitive functions., (© 2023 The Authors. Child Development published by Wiley Periodicals LLC on behalf of Society for Research in Child Development.)- Published
- 2023
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76. Author Correction: Discovery of 42 genome-wide significant loci associated with dyslexia.
- Author
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Doust C, Fontanillas P, Eising E, Gordon SD, Wang Z, Alagöz G, Molz B, Pourcain BS, Francks C, Marioni RE, Zhao J, Paracchini S, Talcott JB, Monaco AP, Stein JF, Gruen JR, Olson RK, Willcutt EG, DeFries JC, Pennington BF, Smith SD, Wright MJ, Martin NG, Auton A, Bates TC, Fisher SE, and Luciano M
- Published
- 2023
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77. Discovery of 42 genome-wide significant loci associated with dyslexia.
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Doust C, Fontanillas P, Eising E, Gordon SD, Wang Z, Alagöz G, Molz B, Pourcain BS, Francks C, Marioni RE, Zhao J, Paracchini S, Talcott JB, Monaco AP, Stein JF, Gruen JR, Olson RK, Willcutt EG, DeFries JC, Pennington BF, Smith SD, Wright MJ, Martin NG, Auton A, Bates TC, Fisher SE, and Luciano M
- Subjects
- Child, Adult, Humans, Reading, Language, Asian People, Genome-Wide Association Study, Dyslexia genetics, Dyslexia psychology
- Abstract
Reading and writing are crucial life skills but roughly one in ten children are affected by dyslexia, which can persist into adulthood. Family studies of dyslexia suggest heritability up to 70%, yet few convincing genetic markers have been found. Here we performed a genome-wide association study of 51,800 adults self-reporting a dyslexia diagnosis and 1,087,070 controls and identified 42 independent genome-wide significant loci: 15 in genes linked to cognitive ability/educational attainment, and 27 new and potentially more specific to dyslexia. We validated 23 loci (13 new) in independent cohorts of Chinese and European ancestry. Genetic etiology of dyslexia was similar between sexes, and genetic covariance with many traits was found, including ambidexterity, but not neuroanatomical measures of language-related circuitry. Dyslexia polygenic scores explained up to 6% of variance in reading traits, and might in future contribute to earlier identification and remediation of dyslexia., (© 2022. The Author(s).)
- Published
- 2022
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78. Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix.
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Versace E, Sgadò P, George J, Loveland JL, Ward J, Thorpe P, Jensen LJ, Spencer KA, Paracchini S, and Vallortigara G
- Subjects
- Animals, Extracellular Matrix, Gene Expression, Retina, Chickens physiology, Functional Laterality physiology
- Abstract
Left-right asymmetries in the nervous system (lateralisation) influence a broad range of behaviours, from social responses to navigation and language. The role and pathways of endogenous and environmental mechanisms in the ontogeny of lateralisation remains to be established. The domestic chick is a model of both endogenous and experience-induced lateralisation driven by light exposure. Following the endogenous rightward rotation of the embryo, the asymmetrical position in the egg results in a greater exposure of the right eye to environmental light. To identify the genetic pathways activated by asymmetric light stimulation, and their time course, we exposed embryos to different light regimes: darkness, 6 h of light and 24 h of light. We used RNA-seq to compare gene expression in the right and left retinas and telencephalon. We detected differential gene expression in right vs left retina after 6 h of light exposure. This difference was absent in the darkness condition and had already disappeared by 24 h of light exposure, suggesting that light-induced activation is a self-terminating phenomenon. This transient effect of light exposure was associated with a downregulation of the sensitive-period mediator gene DIO2 (iodothyronine deiodinase 2) in the right retina. No differences between genes expressed in the right vs. left telencephalon were detected. Gene networks associated with lateralisation were connected to vascularisation, cell motility, and the extracellular matrix. Interestingly, we know that the extracellular matrix-including the differentially expressed PDGFRB gene-is involved in morphogenesis, sensitive periods, and in the endogenous chiral mechanism of primary cilia, that drives lateralisation. Our data show a similarity between endogenous and experience-driven lateralisation, identifying functional gene networks that affect lateralisation in a specific time window., (© 2022. The Author(s).)
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- 2022
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79. Low-Pressure Laparoscopy Using the AirSeal System versus Standard Insufflation in Early-Stage Endometrial Cancer: A Multicenter, Retrospective Study (ARIEL Study).
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Buda A, Di Martino G, Borghese M, Restaino S, Surace A, Puppo A, Paracchini S, Ferrari D, Perotto S, Novelli A, De Ponti E, Borghi C, Fanfani F, and Fruscio R
- Abstract
The aim of our study was to evaluate the benefits of a low-pressure insufflation system (AirSeal) vs. a standard insufflation system in terms of anesthesiologists’ parameters and postoperative pain in patients undergoing laparoscopic surgery for early-stage endometrial cancer. This retrospective study involved five tertiary centers and included 152 patients with apparent early-stage disease who underwent laparoscopic surgical staging with either the low-pressure AirSeal system (8−10 mmHg, n = 84) or standard laparoscopic insufflation (10−12 mmHg, n = 68). All the intraoperative anesthesia variables evaluated (systolic blood pressure, end-tidal CO2, peak airway pressure) were significantly lower in the AirSeal group. We recorded a statistically significant difference between the two groups in the median NRS scores for global pain recorded at 4, 8, and 24 h, and for overall shoulder pain after surgery. Significantly more women in the AirSeal group were also discharged on day one compared to the standard group. All such results were confirmed when analyzing the subgroup of women with a BMI >30 kg/m2. In conclusion, according to our preliminary study, low-pressure laparoscopy represents a valid alternative to standard laparoscopy and could facilitate the development of outpatient surgery.
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- 2022
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80. Quantitative multidimensional phenotypes improve genetic analysis of laterality traits.
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Schmitz J, Zheng M, Lui KFH, McBride C, Ho CS, and Paracchini S
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- Child, Humans, Longitudinal Studies, Phenotype, Twins genetics, Foot, Functional Laterality genetics
- Abstract
Handedness is the most commonly investigated lateralised phenotype and is usually measured as a binary left/right category. Its links with psychiatric and neurodevelopmental disorders prompted studies aimed at understanding the underlying genetics, while other measures and side preferences have been less studied. We investigated the heritability of hand, as well as foot, and eye preference by assessing parental effects (n ≤ 5028 family trios) and SNP-based heritability (SNP-h
2 , n ≤ 5931 children) in the Avon Longitudinal Study of Parents and Children (ALSPAC). An independent twin cohort from Hong Kong (n = 358) was used to replicate results from structural equation modelling (SEM). Parental left-side preference increased the chance of an individual to be left-sided for the same trait, with stronger maternal than paternal effects for footedness. By regressing out the effects of sex, age, and ancestry, we transformed laterality categories into quantitative measures. The SNP-h2 for quantitative handedness and footedness was 0.21 and 0.23, respectively, which is higher than the SNP-h2 reported in larger genetic studies using binary handedness measures. The heritability of the quantitative measure of handedness increased (0.45) compared to a binary measure for writing hand (0.27) in the Hong Kong twins. Genomic and behavioural SEM identified a shared genetic factor contributing to handedness, footedness, and eyedness, but no independent effects on individual phenotypes. Our analysis demonstrates how quantitative multidimensional laterality phenotypes are better suited to capture the underlying genetics than binary traits., (© 2022. The Author(s).)- Published
- 2022
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81. Handedness in twins: meta-analyses.
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Pfeifer LS, Schmitz J, Papadatou-Pastou M, Peterburs J, Paracchini S, and Ocklenburg S
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- Birth Weight, Humans, Prevalence, Twins, Monozygotic genetics, Functional Laterality genetics, Twins, Dizygotic genetics
- Abstract
Background: In the general population, 10.6% of people favor their left hand over the right for motor tasks. Previous research suggests higher prevalence of atypical (left-, mixed-, or non-right-) handedness in (i) twins compared to singletons, and in (ii) monozygotic compared to dizygotic twins. Moreover, (iii) studies have shown a higher rate of handedness concordance in monozygotic compared to dizygotic twins, in line with genetic factors playing a role for handedness., Methods: By means of a systematic review, we identified 59 studies from previous literature and performed three sets of random effects meta-analyses on (i) twin-to-singleton Odds Ratios (21 studies, n = 189,422 individuals) and (ii) monozygotic-to-dizygotic twin Odds Ratios (48 studies, n = 63,295 individuals), both times for prevalence of left-, mixed-, and non-right-handedness. For monozygotic and dizygotic twin pairs we compared (iii) handedness concordance Odds Ratios (44 studies, n = 36,217 twin pairs). We also tested for potential effects of moderating variables, such as sex, age, the method used to assess handedness, and the twins' zygosity., Results: We found (i) evidence for higher prevalence of left- (Odds Ratio = 1.40, 95% Confidence Interval = [1.26, 1.57]) and non-right- (Odds Ratio = 1.36, 95% Confidence Interval = [1.22, 1.52]), but not mixed-handedness (Odds Ratio = 1.08, 95% Confidence Interval = [0.52, 2.27]) among twins compared to singletons. We further showed a decrease in Odds Ratios in more recent studies (post-1975: Odds Ratio = 1.30, 95% Confidence Interval = [1.17, 1.45]) compared to earlier studies (pre-1975: Odds Ratio = 1.90, 95% Confidence Interval = [1.59-2.27]). While there was (ii) no difference between monozygotic and dizygotic twins regarding prevalence of left- (Odds Ratio = 0.98, 95% Confidence Interval = [0.89, 1.07]), mixed- (Odds Ratio = 0.96, 95% Confidence Interval = [0.46, 1.99]), or non-right-handedness (Odds Ratio = 1.01, 95% Confidence Interval = [0.91, 1.12]), we found that (iii) handedness concordance was elevated among monozygotic compared to dizygotic twin pairs (Odds Ratio = 1.11, 95% Confidence Interval = [1.06, 1.18]). By means of moderator analyses, we did not find evidence for effects of potentially confounding variables., Conclusion: We provide the largest and most comprehensive meta-analysis on handedness in twins. Although a raw, unadjusted analysis found a higher prevalence of left- and non-right-, but not mixed-handedness among twins compared to singletons, left-handedness was substantially more prevalent in earlier than in more recent studies. The single large, recent study which included birth weight, Apgar score and gestational age as covariates found no twin-singleton difference in handedness rate, but these covariates could not be included in the present meta-analysis. Together, the secular shift and the influence of covariates probably make it unsafe to conclude that twinning has a genuine relationship to handedness., (© 2022. The Author(s).)
- Published
- 2022
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82. KIAA0319 influences cilia length, cell migration and mechanical cell-substrate interaction.
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Diaz R, Kronenberg NM, Martinelli A, Liehm P, Riches AC, Gather MC, and Paracchini S
- Subjects
- Actins metabolism, CRISPR-Cas Systems, Cell Line, Humans, Microscopy, Interference, Models, Genetic, Podosomes physiology, Retinal Pigment Epithelium metabolism, Vinculin metabolism, Cell Communication genetics, Cell Communication physiology, Cell Movement genetics, Cell Movement physiology, Cilia genetics, Cilia physiology, Nerve Tissue Proteins genetics, Nerve Tissue Proteins physiology, Retinal Pigment Epithelium cytology
- Abstract
Following its association with dyslexia in multiple genetic studies, the KIAA0319 gene has been extensively investigated in different animal models but its function in neurodevelopment remains poorly understood. We developed the first human cellular knockout model for KIAA0319 in RPE1 retinal pigment epithelia cells via CRISPR-Cas9n to investigate its role in processes suggested but not confirmed in previous studies, including cilia formation and cell migration. We observed in the KIAA0319 knockout increased cilia length and accelerated cell migration. Using Elastic Resonator Interference Stress Microscopy (ERISM), we detected an increase in cellular force for the knockout cells that was restored by a rescue experiment. Combining ERISM and immunostaining we show that RPE1 cells exert highly dynamic, piconewton vertical pushing forces through actin-rich protrusions that are surrounded by vinculin-rich pulling sites. This protein arrangement and force pattern has previously been associated to podosomes in other cells. KIAA0319 depletion reduces the fraction of cells forming these actin-rich protrusions. Our results suggest an involvement of KIAA0319 in cilia biology and cell-substrate force regulation., (© 2022. The Author(s).)
- Published
- 2022
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83. Insights into Dyslexia Genetics Research from the Last Two Decades.
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Erbeli F, Rice M, and Paracchini S
- Abstract
Dyslexia, a specific reading disability, is a common (up to 10% of children) and highly heritable (~70%) neurodevelopmental disorder. Behavioral and molecular genetic approaches are aimed towards dissecting its significant genetic component. In the proposed review, we will summarize advances in twin and molecular genetic research from the past 20 years. First, we will briefly outline the clinical and educational presentation and epidemiology of dyslexia. Next, we will summarize results from twin studies, followed by molecular genetic research (e.g., genome-wide association studies (GWASs)). In particular, we will highlight converging key insights from genetic research. (1) Dyslexia is a highly polygenic neurodevelopmental disorder with a complex genetic architecture. (2) Dyslexia categories share a large proportion of genetics with continuously distributed measures of reading skills, with shared genetic risks also seen across development. (3) Dyslexia genetic risks are shared with those implicated in many other neurodevelopmental disorders (e.g., developmental language disorder and dyscalculia). Finally, we will discuss the implications and future directions. As the diversity of genetic studies continues to increase through international collaborate efforts, we will highlight the challenges in advances of genetics discoveries in this field.
- Published
- 2021
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84. Hand preference and Mathematical Learning Difficulties: New data from Greece, the United Kingdom, and Germany and two meta-analyses of the literature.
- Author
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Papadatou-Pastou M, Panagiotidou DA, Abbondanza F, Fischer U, Paracchini S, and Karagiannakis G
- Subjects
- Germany, Greece, Humans, United Kingdom, Cognition, Functional Laterality
- Abstract
Increased rates of atypical handedness are observed in neurotypical individuals who are low-performing in mathematical tasks as well as in individuals with special educational needs, such as dyslexia. This is the first investigation of handedness in individuals with Mathematical Learning Difficulties (MLD). We report three new studies ( N = 134; N = 1,893; N = 153) and two sets of meta-analyses (22 studies; N = 3,667). No difference in atypical hand preference between MLD and Typically Achieving (TA) individuals was found when handedness was assessed with self-report questionnaires, but weak evidence of a difference was found when writing hand was the handedness criterion in Study 1 ( p = .049). Similarly, when combining data meta-analytically, no hand preference differences were detected. We suggest that: (i) potential handedness effects require larger samples, (ii) direction of hand preference is not a sensitive enough measure of handedness in this context, or that (iii) increased rates of atypical hand preference are not associated with MLD. The latter scenario would suggest that handedness is specifically linked to language-related conditions rather than conditions related to cognitive abilities at large. Future studies need to consider hand skill and degree of hand preference in MLD.
- Published
- 2021
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85. Genome-wide association study reveals new insights into the heritability and genetic correlates of developmental dyslexia.
- Author
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Gialluisi A, Andlauer TFM, Mirza-Schreiber N, Moll K, Becker J, Hoffmann P, Ludwig KU, Czamara D, Pourcain BS, Honbolygó F, Tóth D, Csépe V, Huguet G, Chaix Y, Iannuzzi S, Demonet JF, Morris AP, Hulslander J, Willcutt EG, DeFries JC, Olson RK, Smith SD, Pennington BF, Vaessen A, Maurer U, Lyytinen H, Peyrard-Janvid M, Leppänen PHT, Brandeis D, Bonte M, Stein JF, Talcott JB, Fauchereau F, Wilcke A, Kirsten H, Müller B, Francks C, Bourgeron T, Monaco AP, Ramus F, Landerl K, Kere J, Scerri TS, Paracchini S, Fisher SE, Schumacher J, Nöthen MM, Müller-Myhsok B, and Schulte-Körne G
- Subjects
- Attention Deficit Disorder with Hyperactivity genetics, Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Intracellular Signaling Peptides and Proteins genetics, Dyslexia genetics, Multifactorial Inheritance, Polymorphism, Single Nucleotide
- Abstract
Developmental dyslexia (DD) is a learning disorder affecting the ability to read, with a heritability of 40-60%. A notable part of this heritability remains unexplained, and large genetic studies are warranted to identify new susceptibility genes and clarify the genetic bases of dyslexia. We carried out a genome-wide association study (GWAS) on 2274 dyslexia cases and 6272 controls, testing associations at the single variant, gene, and pathway level, and estimating heritability using single-nucleotide polymorphism (SNP) data. We also calculated polygenic scores (PGSs) based on large-scale GWAS data for different neuropsychiatric disorders and cortical brain measures, educational attainment, and fluid intelligence, testing them for association with dyslexia status in our sample. We observed statistically significant (p < 2.8 × 10
-6 ) enrichment of associations at the gene level, for LOC388780 (20p13; uncharacterized gene), and for VEPH1 (3q25), a gene implicated in brain development. We estimated an SNP-based heritability of 20-25% for DD, and observed significant associations of dyslexia risk with PGSs for attention deficit hyperactivity disorder (at pT = 0.05 in the training GWAS: OR = 1.23[1.16; 1.30] per standard deviation increase; p = 8 × 10-13 ), bipolar disorder (1.53[1.44; 1.63]; p = 1 × 10-43 ), schizophrenia (1.36[1.28; 1.45]; p = 4 × 10-22 ), psychiatric cross-disorder susceptibility (1.23[1.16; 1.30]; p = 3 × 10-12 ), cortical thickness of the transverse temporal gyrus (0.90[0.86; 0.96]; p = 5 × 10-4 ), educational attainment (0.86[0.82; 0.91]; p = 2 × 10-7 ), and intelligence (0.72[0.68; 0.76]; p = 9 × 10-29 ). This study suggests an important contribution of common genetic variants to dyslexia risk, and novel genomic overlaps with psychiatric conditions like bipolar disorder, schizophrenia, and cross-disorder susceptibility. Moreover, it revealed the presence of shared genetic foundations with a neural correlate previously implicated in dyslexia by neuroimaging evidence., (© 2020. The Author(s).)- Published
- 2021
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86. Genome-wide association study and polygenic risk score analysis for hearing measures in children.
- Author
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Schmitz J, Abbondanza F, and Paracchini S
- Subjects
- Adult, Aged, Child, Cognition, Female, Hearing genetics, Humans, Risk Factors, Genome-Wide Association Study, Schizophrenia genetics
- Abstract
An efficient auditory system contributes to cognitive and psychosocial development. A right ear advantage in hearing thresholds (HTs) has been described in adults and atypical patterns of left/right hearing threshold asymmetry (HTA) have been described for psychiatric and neurodevelopmental conditions. Previous genome-wide association studies (GWASs) on HT have mainly been conducted in elderly participants whose hearing is more likely to be affected by external environmental factors. Here, we investigated HT and HTA in a children population cohort (ALSPAC, n = 6,743). Better hearing was associated with better cognitive performance and higher socioeconomic status. At the group level, HTA suggested a left ear advantage (mean = -0.28 dB) that was mainly driven by females. SNP heritability for HT and HTA was 0.13 and 0.02, respectively (n = 4,989). We found a modest negative genetic correlation between HT and reading ability. GWAS for HT (n = 5,344) did not yield significant hits but polygenic risk scores for higher educational attainment (EA, ß = -1,564.72, p = .008) and schizophrenia (ß = -241.14, p = .004) were associated with lower HT, that is, better hearing. In summary, we report new data supporting associations between hearing measures and cognitive abilities at the behavioral level. Genetic analysis suggests shared biological pathways between cognitive and sensory systems and provides evidence for a positive outcome of genetic risk for schizophrenia., (© 2021 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics published by Wiley Periodicals LLC.)
- Published
- 2021
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87. A rare missense variant in the ATP2C2 gene is associated with language impairment and related measures.
- Author
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Martinelli A, Rice ML, Talcott JB, Diaz R, Smith S, Raza MH, Snowling MJ, Hulme C, Stein J, Hayiou-Thomas ME, Hawi Z, Kent L, Pitt SJ, Newbury DF, and Paracchini S
- Subjects
- Adenosine Triphosphatases genetics, Adolescent, Adult, Child, Dyslexia pathology, Female, Genetic Association Studies, Genotype, Humans, Male, Mutation, Missense, Pedigree, Polymorphism, Single Nucleotide, Specific Language Disorder epidemiology, Specific Language Disorder pathology, Exome Sequencing, Young Adult, Calcium-Transporting ATPases genetics, Dyslexia genetics, Genetic Predisposition to Disease, Specific Language Disorder genetics
- Abstract
At least 5% of children present unexpected difficulties in expressing and understanding spoken language. This condition is highly heritable and often co-occurs with other neurodevelopmental disorders such as dyslexia and ADHD. Through an exome sequencing analysis, we identified a rare missense variant (chr16:84405221, GRCh38.p12) in the ATP2C2 gene. ATP2C2 was implicated in language disorders by linkage and association studies, and exactly the same variant was reported previously in a different exome sequencing study for language impairment (LI). We followed up this finding by genotyping the mutation in cohorts selected for LI and comorbid disorders. We found that the variant had a higher frequency in LI cases (1.8%, N = 360) compared with cohorts selected for dyslexia (0.8%, N = 520) and ADHD (0.7%, N = 150), which presented frequencies comparable to reference databases (0.9%, N = 24 046 gnomAD controls). Additionally, we observed that carriers of the rare variant identified from a general population cohort (N = 42, ALSPAC cohort) presented, as a group, lower scores on a range of reading and language-related measures compared to controls (N = 1825; minimum P = 0.002 for non-word reading). ATP2C2 encodes for an ATPase (SPCA2) that transports calcium and manganese ions into the Golgi lumen. Our functional characterization suggested that the rare variant influences the ATPase activity of SPCA2. Thus, our results further support the role of ATP2C2 locus in language-related phenotypes and pinpoint the possible effects of a specific rare variant at molecular level., (© The Author(s) 2021. Published by Oxford University Press.)
- Published
- 2021
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88. Four meta-analyses across 164 studies on atypical footedness prevalence and its relation to handedness.
- Author
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Packheiser J, Schmitz J, Berretz G, Carey DP, Paracchini S, Papadatou-Pastou M, and Ocklenburg S
- Subjects
- Adolescent, Behavior, Child, Child, Preschool, Female, Functional Laterality genetics, Healthy Volunteers, Humans, Infant, Infant, Newborn, Longitudinal Studies, Male, Phenotype, Foot physiology, Functional Laterality physiology, Hand physiology
- Abstract
Human lateral preferences, such as handedness and footedness, have interested researchers for decades due to their pronounced asymmetries at the population level. While there are good estimates on the prevalence of handedness in the population, there is no large-scale estimation on the prevalence of footedness. Furthermore, the relationship between footedness and handedness still remains elusive. Here, we conducted meta-analyses with four different classification systems for footedness on 145,135 individuals across 164 studies including new data from the ALSPAC cohort. The study aimed to determine a reliable point estimate of footedness, to study the association between footedness and handedness, and to investigate moderating factors influencing footedness. We showed that the prevalence of atypical footedness ranges between 12.10% using the most conservative criterion of left-footedness to 23.7% including all left- and mixed-footers as a single non-right category. As many as 60.1% of left-handers were left-footed whereas only 3.2% of right-handers were left-footed. Males were 4.1% more often non-right-footed compared to females. Individuals with psychiatric and neurodevelopmental disorders exhibited a higher prevalence of non-right-footedness. Furthermore, the presence of mixed-footedness was higher in children compared to adults and left-footedness was increased in athletes compared to the general population. Finally, we showed that footedness is only marginally influenced by cultural and social factors, which play a crucial role in the determination of handedness. Overall, this study provides new and useful reference data for laterality research. Furthermore, the data suggest that footedness is a valuable phenotype for the study of lateral motor biases, its underlying genetics and neurodevelopment.
- Published
- 2020
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89. Human handedness: A meta-analysis.
- Author
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Papadatou-Pastou M, Ntolka E, Schmitz J, Martin M, Munafò MR, Ocklenburg S, and Paracchini S
- Subjects
- Humans, Biomedical Research standards, Functional Laterality physiology, Neuropsychological Tests standards
- Abstract
Across time and place, right hand preference has been the norm, but what is the precise prevalence of left- and right-handedness? Frequency of left-handedness has shaped and underpinned different fields of research, from cognitive neuroscience to human evolution, but reliable distributional estimates are still lacking. While hundreds of empirical studies have assessed handedness, a large-scale, comprehensive review of the prevalence of handedness and the factors that moderate it, is currently missing. Here, we report 5 meta-analyses on hand preference for different manual tasks and show that left-handedness prevalence lies between 9.3% (using the most stringent criterion of left-handedness) to 18.1% (using the most lenient criterion of nonright-handedness), with the best overall estimate being 10.6% (10.4% when excluding studies assessing elite athletes' handedness). Handedness variability depends on (a) study characteristics, namely year of publication and ways to measure and classify handedness, and (b) participant characteristics, namely sex and ancestry. Our analysis identifies the role of moderators that require taking into account in future studies on handedness and hemispheric asymmetries. We argue that the same evolutionary mechanisms should apply across geographical regions to maintain the roughly 1:10 ratio, while cultural factors, such as pressure against left-hand use, moderate the magnitude of the prevalence of left-handedness. Although handedness appears as a straightforward trait, there is no universal agreement on how to assess it. Therefore, we urge researchers to fully report study and participant characteristics as well as the detailed procedure by which handedness was assessed and make raw data publicly available. (PsycInfo Database Record (c) 2020 APA, all rights reserved).
- Published
- 2020
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90. Impact of cancer in the management of delivery: 10 years of variations.
- Author
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Masturzo B, Parpinel G, Macchi C, De Ruvo D, Paracchini S, Baima Poma C, Danna P, Pagliardini G, and Zola P
- Subjects
- Abortion, Induced statistics & numerical data, Abortion, Spontaneous epidemiology, Adult, Birth Weight, Cesarean Section statistics & numerical data, Female, Gestational Age, Humans, Incidence, Infant, Newborn, Neoplasms therapy, Pregnancy, Pregnancy Complications, Neoplastic epidemiology, Pregnancy Complications, Neoplastic therapy, Cancer Survivors statistics & numerical data, Neoplasms epidemiology
- Abstract
Importance: The active-during-pregnancy-cancer (ADPC) is a condition that complicates the 0.1% of pregnancies. Abortion, preterm delivery and cesarean section (CS) are common attitudes for these patients, because of scarcity of evidence-based studies. Not-active-during-pregnancy-cancer (NADPC) is an increasing medical problem. The fertility of young girls survived to neoplasia is significantly lower compared to general population and there are increased rates of low birth weight and preterm birth. Objective: To analyze the impact that the pregnancy-related neoplastic disease has on management of deliveries in the decade 2006-2015. Material and methods: In this observational study, we collected obstetric and oncological data about 205 patients bearing a history of cancer related to pregnancy between January 2006 and September 2016 from Sant'Anna Hospital database archive in Turin. The entire population was divided in 59 patients with ADPC and 146 patients with NADPC because it was cured before starting the gestation. Three ADPC and three NADPC patients who completed their pregnancy in the year 2016 were excluded from the 10 years 2006-2015 trends realization. All in situ and invasive cancers were considered. Results: In ADPC patients, we registered 3.4% miscarriage and 15.3% iatrogenic abortion. The type of delivery was vaginal (22%) and CS (59.3%). Induction of labor was 14.6%, elective CS was 68.8%: the indication for these procedures was 78.6% oncological. The average gestational age was 35.5 weeks. In NADPC patients, we registered 9.6% miscarriage and 8.2% iatrogenic abortion. The type of delivery was vaginal (43.2%) and CS (39%). Induction of labor was 11.7%, elective CS was 36.7%: the indication for these procedures was 77.5% obstetrical. The average gestational age was 38.3 weeks. Conclusions: Ten-year trends in ADPC and NADPC patients showed an increase of induced deliveries and a decrease in elective CS. We observed not significant reduction of gestational age and birth weight. A contemporary decrease of oncological indications for CS in the two populations was reported.
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- 2020
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91. Prevalence and heritability of handedness in a Hong Kong Chinese twin and singleton sample.
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Zheng M, McBride C, Ho CS, Chan JK, Choy KW, and Paracchini S
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- Asian People, Child, Female, Hong Kong, Humans, Inheritance Patterns, Male, Prevalence, White People, Writing, Functional Laterality genetics, Twins genetics
- Abstract
Background: Left-handedness prevalence has been consistently reported at around 10% with heritability estimates at around 25%. Higher left-handedness prevalence has been reported in males and in twins. Lower prevalence has been reported in Asia, but it remains unclear whether this is due to biological or cultural factors. Most studies are based on samples with European ethnicities and using the preferred hand for writing as key assessment. Here, we investigated handedness in a sample of Chinese school children in Hong Kong, including 426 singletons and 205 pairs of twins, using both the Edinburgh Handedness Inventory and Pegboard Task., Results: Based on a binary definition of writing hand, we found a higher prevalence of left-handedness (8%) than what was previously reported in Asian datasets. We found no evidence of increased left-handedness in twins, but our results were in line with previous findings showing that males have a higher tendency to be left-handed than females. Heritability was similar for both hand preference (21%) and laterality indexes (22%). However, these two handedness measures present only a moderate correlation (.42) and appear to be underpinned by different genetic factors., Conclusion: In summary, we report new reference data for an ethnic group usually underrepresented in the literature. Our heritability analysis supports the idea that different measures will capture different components of handedness and, as a consequence, datasets assessed with heterogeneous criteria are not easily combined or compared.
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- 2020
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92. Different laterality indexes are poorly correlated with one another but consistently show the tendency of males and females to be more left- and right-lateralized, respectively.
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Buenaventura Castillo C, Lynch AG, and Paracchini S
- Abstract
The most common way to assess handedness is based on the preferred hand for writing, leading to a binary (left or right) trait. Handedness can also be assessed as a continuous trait with laterality indexes, but these are not time- and cost-effective, and are not routinely collected. Rarely, different handedness measures are collected for the same individuals. Here, we assessed the relationship of preferred hand for writing with four laterality indexes, reported in previous literature, derived from measures of dexterity (pegboard task, marking squares and sorting matches) and strength (grip strength), available in a range of N = 6664-8069 children from the ALSPAC cohort. Although all indexes identified a higher proportion of individuals performing better with their right hand, they showed low correlation with each other (0.08-0.3). Left handers were less consistent compared to right handers in performing better with their dominant hand, but that varied across indexes, i.e. 13% of left handers performed better with their right hand on marking squares compared to 48% for sorting matches and grip strength. Analysis of sex effects on the laterality indexes showed that males and females tend to be, on all measures, more left- and right-lateralized, respectively. Males were also over-represented among the individuals performing equally with both hands suggesting they had a higher tendency to be weakly lateralized. This study shows that different handedness measures tap into different dimensions of laterality and cannot be used interchangeably. The trends observed across indexes for males and females suggest that sex effects should be taken into account in handedness and laterality studies., Competing Interests: The authors have no competing interests to declare., (© 2020 The Authors.)
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- 2020
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93. Surgical technique for the sentinel lymph node (SLN) mapping in 10 steps.
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Paracchini S, Chauvet P, Gałczyński K, Boulay E, Jaillet L, Canis M, and Bourdel N
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- Female, Humans, Sentinel Lymph Node Biopsy methods, Endometrial Neoplasms pathology, Endometrial Neoplasms surgery, Sentinel Lymph Node pathology, Sentinel Lymph Node surgery
- Abstract
Competing Interests: Declaration of competing interest The authors declare that they have no conflicts of interest and no founding to disclose. The following is the supplementary data related to this article. Supplementary data to this article can be found online at https://doi.org/10.1016/j.ygyno.2020.01.009.
- Published
- 2020
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94. Surgical Technique for Endometrioma in 10 Steps.
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Bourdel N, Paracchini S, Chauvet P, Fava V, Gałczyński K, and Canis M
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- Dissection methods, Endometriosis pathology, Female, Humans, Ovarian Cysts pathology, Ovariectomy methods, Ovary pathology, Ovary surgery, Plastic Surgery Procedures methods, Endometriosis surgery, Gynecologic Surgical Procedures methods, Laparoscopy methods, Ovarian Cysts surgery
- Abstract
Objective: Laparoscopic cystectomy for endometrioma has the advantages of a minimally invasive approach. The standardization and description of the technique are the main objectives of this video. We described the surgery in 10 steps, which could help to make this procedure easier and safer., Design: Step-by-step video demonstration of the technique., Setting: A French university tertiary care hospital., Intervention: Two standardized laparoscopic cystectomy were recorded to realize the video. The local institutional review board ruled that approval was not required because the video describes a technique and does not report a clinical case. This video presents a systematic approach to cystectomy for endometrioma clearly divided into 10 steps: (1) preoperative evaluation [1]; (2) diagnosis and exploration [2]; (3) adhesiolysis, mobilization of the ovary; (4) cyst rupture, exposition of the entry site; (5) identification of the cleavage plan; (6) endometrioma easy dissection; (7) endometrioma difficult dissection; (8) hemostasis, reconstruction of the ovary [3]; (9) exploration of the ovarian fossa; and (10) washing, extraction of the cyst [3,4]., Conclusion: Standardization of laparoscopic cystectomy for endometrioma could make this procedure easier and safer to perform. The 10 steps presented help to perform each part of the surgery in a logical sequence, making the procedure easier to realize. Moreover, the standardization of the surgical techniques may reduce the learning curve., (Copyright © 2019 AAGL. Published by Elsevier Inc. All rights reserved.)
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- 2020
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95. Day case parathyroidectomy: is this the right way for the patients?
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Rago R, Forfori F, Frustaci G, Monzani R, Paracchini S, Franceschini F, Cetani F, and Materazzi G
- Abstract
Background: Minimally-invasive video-assisted parathyroidectomy (MIVAP) can be considered as the primary treatment of choice for single parathyroid adenoma. Often, this technique is performed in a day surgery setting and is associated with regional anaesthesia (RA). Many studies have already reported the feasibility and safety of MIVAP in day surgery. Here our focus has been on the patient's personal experience with these procedures through an assessment of their recovery at home., Methods: We conducted a prospective observational study in the University Hospital of Pisa Day Surgery Unit. Forty-eight patients were enrolled and divided by personal choice of anaesthesia technique: a regional anaesthesia group (RAg) and general anaesthesia group (GAg). Data were extracted from the medical records and three questionnaires: the first was self-compiled at discharge (Q1), while the second (Q2) and the third (Q3) were administered as telephone surveys., Results: None of the patients in RAg reported pain longer than 1 day after discharge, whereas 15% of patients in GAg reported pain relief the third day after discharge (P=0.0065). Discharge in RAg was within 3 hours in 12.5% of patients, within 4 hours in 78.1%, and within 5 hours in 9.4%. Discharge in GAg was within 5 hours in 53.8% and in more than 5 hours in 46.1% (P=0.0027)., Conclusions: Patients highly appreciated day-case parathyroidectomy. Furthermore, the association of RA with MIVAP leads to better results than those of general anaesthesia (GA) and MIVAP. Finally, we point out that it is fundamental that the physicians pay attention to what the patients consider important for them; that is, the personal meaning of the hospitalization., Competing Interests: Conflicts of Interest: The authors have no conflicts of interest to declare., (2020 Gland Surgery. All rights reserved.)
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- 2020
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96. Laparoscopic Ovarian Dermoid Cystectomy in 10 Steps.
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Paracchini S, Rhazi Y, Chauvet P, Gałczyński K, Jaillet L, Canis M, and Bourdel N
- Subjects
- Adult, Cytoreduction Surgical Procedures methods, Dissection methods, Female, Humans, Laparoscopy methods, Ovarian Neoplasms surgery, Ovariectomy methods, Teratoma surgery
- Abstract
Study Objective: Laparoscopic cystectomy for ovarian teratomas has the advantages of a minimally invasive approach [1]. The standardization and description of the technique are the main objectives of this video (Video 1). We described the surgery in 10 steps [2], which could help make this procedure easier and safer., Design: A step-by-step video demonstration of the technique., Setting: A French university tertiary care hospital., Patients: Patients with ovarian teratomas with indication for laparoscopic cystectomy [3]. The local institutional review board ruled that approval was not required for this video article because the video describes a technique and does not report a clinical case., Interventions: Standardized laparoscopic cystectomies were recorded to realize the video., Measurements and Main Results: This video presents a systematic approach to cystectomy for teratoma clearly divided into 10 steps: (1) planning of the surgery, (2) ergonomy and materials, (3) exploration and cytology, (4) prevention of peritoneal spillage [4], (5) mobilization of the ovary, (6) incision of the ovary, (7) dissection, (8) hemostasis, (9) exteriorization of the cyst, and (10) washing and exploration., Conclusion: Standardization of laparoscopic cystectomy for ovarian teratoma could make this procedure easier and safer to perform. The 10 steps presented help to perform each part of the surgery in a logical sequence, making the procedure ergonomic and easier to adopt and learn. Moreover, the standardization of the surgical techniques could reduce the learning curve., (Copyright © 2019. Published by Elsevier Inc.)
- Published
- 2020
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97. The dyslexia susceptibility KIAA0319 gene shows a specific expression pattern during zebrafish development supporting a role beyond neuronal migration.
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Gostic M, Martinelli A, Tucker C, Yang Z, Gasparoli F, Ewart JY, Dholakia K, Sillar KT, Tello JA, and Paracchini S
- Subjects
- Animals, Animals, Genetically Modified, Cell Movement physiology, Dyslexia genetics, Dyslexia metabolism, Gene Expression, Gene Expression Regulation, Developmental, Humans, Liver metabolism, Myocardium metabolism, Neurogenesis physiology, Neurons metabolism, Zebrafish, Brain embryology, Brain metabolism, Eye embryology, Eye metabolism, Notochord metabolism
- Abstract
Dyslexia is a common neurodevelopmental disorder caused by a significant genetic component. The KIAA0319 gene is one of the most robust dyslexia susceptibility factors but its function remains poorly understood. Initial RNA-interference studies in rats suggested a role in neuronal migration whereas subsequent work with double knock-out mouse models for both Kiaa0319 and its paralogue Kiaa0319-like reported effects in the auditory system but not in neuronal migration. To further understand the role of KIAA0319 during neurodevelopment, we carried out an expression study of its zebrafish orthologue at different embryonic stages. We used different approaches including RNAscope in situ hybridization combined with light-sheet microscopy. The results show particularly high expression during the first few hours of development. Later, expression becomes localized in well-defined structures. In addition to high expression in the brain, we report for the first time expression in the eyes and the notochord. Surprisingly, kiaa0319-like, which generally shows a similar expression pattern to kiaa0319, was not expressed in the notochord suggesting a distinct role for kiaa0319 in this structure. This observation was supported by the identification of notochord enhancers enriched upstream of the KIAA0319 transcription start site, in both zebrafish and humans. This study supports a developmental role for KIAA0319 in the brain as well as in other developing structures, particularly in the notochord which, is key for establishing body patterning in vertebrates., (© 2019 The Authors. The Journal of Comparative Neurology published by Wiley Periodicals, Inc.)
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- 2019
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98. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism.
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Diquigiovanni C, Bergamini C, Diaz R, Liparulo I, Bianco F, Masin L, Baldassarro VA, Rizzardi N, Tranchina A, Buscherini F, Wischmeijer A, Pippucci T, Scarano E, Cordelli DM, Fato R, Seri M, Paracchini S, and Bonora E
- Subjects
- Calcium metabolism, Cell Line, Child, Electron Transport Complex I metabolism, Endosomes genetics, Endosomes metabolism, Humans, Male, Mitochondria metabolism, Mitochondrial Diseases metabolism, NAD genetics, NAD metabolism, NADH Dehydrogenase genetics, NADH Dehydrogenase metabolism, Neurodevelopmental Disorders metabolism, Cell Cycle Proteins genetics, Electron Transport Complex I genetics, Mitochondria genetics, Mitochondrial Diseases genetics, Mutation genetics, Neurodevelopmental Disorders genetics, Pyruvates metabolism
- Abstract
Loss-of-function mutations in the SPART gene cause Troyer syndrome, a recessive form of spastic paraplegia resulting in muscle weakness, short stature, and cognitive defects. SPART encodes for Spartin, a protein linked to endosomal trafficking and mitochondrial membrane potential maintenance. Here, we identified with whole exome sequencing (WES) a novel frameshift mutation in the SPART gene in 2 brothers presenting an uncharacterized developmental delay and short stature. Functional characterization in an SH-SY5Y cell model shows that this mutation is associated with increased neurite outgrowth. These cells also show a marked decrease in mitochondrial complex I (NADH dehydrogenase) activity, coupled to decreased ATP synthesis and defective mitochondrial membrane potential. The cells also presented an increase in reactive oxygen species, extracellular pyruvate, and NADH levels, consistent with impaired complex I activity. In concordance with a severe mitochondrial failure, Spartin loss also led to an altered intracellular Ca
2+ homeostasis that was restored after transient expression of wild-type Spartin. Our data provide for the first time a thorough assessment of Spartin loss effects, including impaired complex I activity coupled to increased extracellular pyruvate. In summary, through a WES study we assign a diagnosis of Troyer syndrome to otherwise undiagnosed patients, and by functional characterization we show that the novel mutation in SPART leads to a profound bioenergetic imbalance.-Diquigiovanni, C., Bergamini, C., Diaz, R., Liparulo, I., Bianco, F., Masin, L., Baldassarro, V. A., Rizzardi, N., Tranchina, A., Buscherini, F., Wischmeijer, A., Pippucci, T., Scarano, E., Cordelli, D. M., Fato, R., Seri, M., Paracchini, S., Bonora, E. A novel mutation in SPART gene causes a severe neurodevelopmental delay due to mitochondrial dysfunction with complex I impairments and altered pyruvate metabolism.- Published
- 2019
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99. Genomic Imprinting As a Window into Human Language Evolution.
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Hitchcock TJ, Paracchini S, and Gardner A
- Subjects
- Adaptation, Physiological genetics, Altruism, Ethics, Genetic Loci, Humans, Interpersonal Relations, Models, Genetic, Models, Theoretical, Phenotype, Biological Evolution, Genomic Imprinting genetics, Language
- Abstract
Humans spend large portions of their time and energy talking to one another, yet it remains unclear whether this activity is primarily selfish or altruistic. Here, it is shown how parent-of-origin specific gene expression-or "genomic imprinting"-may provide an answer to this question. First, it is shown why, regarding language, only altruistic or selfish scenarios are expected. Second, it is pointed out that an individual's maternal-origin and paternal-origin genes may have different evolutionary interests regarding investment into language, and that this intragenomic conflict may drive genomic imprinting which-as the direction of imprint depends upon whether investment into language is relatively selfish or altruistic-may be used to discriminate between these two possibilities. Third, predictions concerning the impact of various mutations and epimutations at imprinted loci on language pathologies are derived. In doing so, a framework is developed that highlights avenues for using intragenomic conflicts to investigate the evolutionary drivers of language., (© 2019 The Authors. BioEssays Published by WILEY Periodicals, Inc.)
- Published
- 2019
- Full Text
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100. Comparison of two "a priori" risk assessment algorithms for preeclampsia in Italy: a prospective multicenter study.
- Author
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Di Martino D, Masturzo B, Paracchini S, Bracco B, Cavoretto P, Prefumo F, Germano C, Morano D, Girlando F, Giorgione V, Parpinel G, Cariello L, Fusè F, Candiani M, Todros T, Rizzo N, and Farina A
- Subjects
- Adult, Algorithms, Female, Humans, Italy, Pregnancy, Prospective Studies, Risk Assessment, Risk Factors, Biomarkers metabolism, Pre-Eclampsia diagnosis
- Abstract
Purpose: To compare the performance of the algorithms proposed by the Fetal Medicine Foundation in 2012 and BCNatal in 2013 in an Italian population., Methods: A multicentric prospective study was carried out which included pregnancies at 11-13 weeks' gestation from Jan 2014 through May 2017. Two previously published algorithms were used for the calculation of the "a priori" risk of preeclampsia (based on risk factors from medical history) in each individual., Results: In a study population of 11,632 cases, 67 (0.6%) developed early preeclampsia and 211 (1.8%) developed late preeclampsia. The detection rates (95% CI) for early and late preeclampsia were 58.2% (45.5-70.2) vs. 41.8% (29.6-54.5) (p value < 0.05) and 44.1% (37.3-51.1) vs. 38% (31.3-44.8) (p value < 0.05) for the Fetal Medicine Foundation and BCNatal, respectively (at a 10% false positive rate). The associated risk was 1:226 and 1:198 (p value ns) for early PE, and 1:17 and 1:24 (p value ns) for late PE for the Fetal Medicine Foundation and BCNatal, respectively., Conclusions: The Fetal Medicine Foundation screening for preeclampsia at 11-13 weeks' gestation scored the highest detection rate for both early and late PE. At a fixed 10% false positive rate, the estimated "a priori" risks of both the Fetal Medicine Foundation and the BCNatal algorithms in an Italian population were quite similar, and both were reliable and consistent.
- Published
- 2019
- Full Text
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