148 results on '"Ki Moo Lim"'
Search Results
52. Machine learning approach to evaluate TdP risk of drugs using cardiac electrophysiological model including inter-individual variability.
- Author
-
Fuadah, Yunendah Nur, Qauli, Ali Ikhsanul, Marcellinus, Aroli, Pramudito, Muhammad Adnan, and Ki Moo Lim
- Subjects
MACHINE learning ,CARDIOVASCULAR agents ,ARTIFICIAL neural networks ,VENTRICULAR arrhythmia ,DRUG utilization - Abstract
Introduction: Predicting ventricular arrhythmia Torsade de Pointes (TdP) caused by drug-induced cardiotoxicity is essential in drug development. Several studies used single biomarkers such as qNet and Repolarization Abnormality (RA) in a single cardiac cell model to evaluate TdP risk. However, a single biomarker may not encompass the full range of factors contributing to TdP risk, leading to divergent TdP risk prediction outcomes, mainly when evaluated using unseen data. We addressed this issue by utilizing multi-in silico features from a population of human ventricular cell models that could capture a representation of the underlying mechanisms contributing to TdP risk to provide a more reliable assessment of druginduced cardiotoxicity. Method: We generated a virtual population of human ventricular cell models using a modified O'Hara-Rudy model, allowing inter-individual variation. IC
50 and Hill coefficients from 67 drugs were used as input to simulate drug effects on cardiac cells. Fourteen features (dVm dt repol, dVm dt max, Vmpeak, Vmresting, APDtri, APD90 , APD50 , Capeak, Cadiastole, Catri, CaD90 , CaD50 , qNet, qInward) could be generated from the simulation and used as input to several machine learning models, including k-nearest neighbor (KNN), Random Forest (RF), XGBoost, and Artificial Neural Networks (ANN). Optimization of the machine learning model was performed using a grid search to select the best parameter of the proposed model. We applied five-fold cross-validationwhile training themodel with 42 drugs and evaluated the model's performance with test data from 25 drugs. Result: The proposed ANN model showed the highest performance in predicting the TdP risk of drugs by providing an accuracy of 0.923 (0.908-0.937), sensitivity of 0.926 (0.909-0.942), specificity of 0.921 (0.906-0.935), and AUC score of 0.964 (0.954-0.975). Discussion and conclusion: According to the performance results, combining the electrophysiological model including inter-individual variation and optimization of machine learning showed good generalization ability when evaluated using the unseen dataset and produced a reliable drug-induced TdP risk prediction system. [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
53. Classification of Epileptic EEG Signal Using MSLD Entropy
- Author
-
Achmad Rizal, Inung Wijayanto, Sugondo Hadiyoso, Yunendah Nur Fuadah, Ki Moo Lim, and Triwiyanto Triwiyanto
- Published
- 2023
- Full Text
- View/download PDF
54. Predicting the optimal position and direction of a ubiquitous ECG using a multi-scale model of cardiac electrophysiology.
- Author
-
Ki Moo Lim, Seong Bae Hong, Jae Won Jeon, Min Su Gyung, Byung-Hoon Ko, Sang-Kon Bae, Kunsoo Shin, and Eun Bo Shim
- Published
- 2011
- Full Text
- View/download PDF
55. Numerical simulation of motion-induced dynamic noise in a ubiquitous ECG application.
- Author
-
Young Tae Kim, Ki Moo Lim, Seong Bae Hong, Ah Jin Ryu, Byung-Hoon Ko, Sang-Kon Bae, Kunsoo Shin, and Eun Bo Shim
- Published
- 2011
- Full Text
- View/download PDF
56. Personal Dialysis Using a Web-Based, Portable System - C-PAK (Carry-on Pulse Artificial Kidney).
- Author
-
Jung Chan Lee, Wook Eun Kim, Ki Moo Lim, Jeong Chul Kim, and Byoung Goo Min
- Published
- 2008
57. In Silico Deterministic Assessment on TdP Risks of Drug-drug Interactions under CiPA Paradigm
- Author
-
Ali Ikhsanul Qauli, Aroli Marcellinus, Muhammad Aldo Setiawan, Andi Faiz Naufal Zain, Azka Muhammad Pinandito, and Ki Moo Lim
- Abstract
Researchers have recently proposed the Comprehensive In-vitro Proarrhythmia Assay (CiPA) to analyze medicines’ TdP risks. Using the TdP metric known as qNet, numerous single-drug effects have been studied to classify the medications as low, intermediate, and high-risk. Furthermore, multiple medication therapies are recognized as a potential method for curing patients, mainly when a limited number of drugs are available. This work expands the TdP risk assessment of drugs by introducing a CiPA-based in silico analysis of the TdP risk of combined drugs. The cardiac cell model was simulated using the population of models approach incorporating drug-drug interactions (DDIs) models for various two-drug combinations. Action potential duration (APD90), qNet, and calcium duration (CaD90) were computed and analyzed as features. The drug combination maps were also utilized to illustrate the impact of DDIs on the TdP risk of combined medicines. We found that the DDIs of the combined drugs alter cell responses in terms of biomarkers such as APD90, qNet, and CaD90 in a highly nonlinear manner. The results also revealed that combinations of high-risk with low-risk and intermediate-risk with low-risk drugs could result in compounds with varying TdP risks depending on the drug concentrations.
- Published
- 2022
- Full Text
- View/download PDF
58. Classification of Atrial Fibrillation and Congestive Heart Failure Using Convolutional Neural Network with Electrocardiogram
- Author
-
Yunendah Nur Fuadah and Ki Moo Lim
- Subjects
medicine.medical_specialty ,business.industry ,Computer Networks and Communications ,Atrial fibrillation ,medicine.disease ,Convolutional neural network ,Text mining ,Hardware and Architecture ,Control and Systems Engineering ,Heart failure ,Internal medicine ,Signal Processing ,Cardiology ,Medicine ,Electrical and Electronic Engineering ,business ,atrial fibrillation ,congestive heart failure ,normal sinus rhythm ,convolutional neural network - Abstract
Atrial fibrillation (AF) and congestive heart failure (CHF) are the most prevalent types of cardiovascular disorders as the leading cause of death due to delayed diagnosis. Early diagnosis of these cardiac conditions is possible by manually analyzing electrocardiogram (ECG) signals. However, manual diagnosis is complex, owing to the various characteristics of ECG signals. An accurate classification system for AF and CHF has the potential to save patient lives. Therefore, this study proposed an ECG signal classification system for AF and CHF using a one-dimensional convolutional neural network (1-D CNN) to provide a robust classification system performance. This study used ECG signal recording of AF, CHF, and NSR, which can be accessed on the Physionet website. A total of 5600 ECG signal segments were obtained from 56 subjects, divided into train sets from 42 subjects (N = 4200 ECG segments), and test sets from 14 subjects (N = 1400). We applied for leave-one-out cross-validation in training to select the best model. The proposed 1-D CNN algorithm successfully classified raw data of ECG signals into normal sinus rhythm (NSR), AF, and CHF by providing the highest classification accuracy of 99.643%, f1-score, recall, and precision of 0.996, respectively, with an AUC score of 0.999. The results showed that the proposed method extracted the ECG signal information directly without needing several preprocessing steps and feature extraction methods that potentially reduce the information contained in the ECG signals. Furthermore, the proposed method outperformed previous studies in classifying AF, CHF, and NSR. Therefore, this approach can be considered as an adjunct for medical personnel to diagnose AF, CHF, and NSR.
- Published
- 2022
- Full Text
- View/download PDF
59. Validation of
- Author
-
Da Un, Jeong, Rakha Zharfarizqi, Danadibrata, Aroli, Marcellinus, and Ki Moo, Lim
- Abstract
Since the Comprehensive
- Published
- 2022
60. Combined deep CNN–LSTM network-based multitasking learning architecture for noninvasive continuous blood pressure estimation using difference in ECG-PPG features
- Author
-
Ki Moo Lim and Da Un Jeong
- Subjects
Databases, Factual ,Computer science ,Science ,Blood Pressure ,02 engineering and technology ,Signal ,Article ,030218 nuclear medicine & medical imaging ,Machine Learning ,03 medical and health sciences ,0302 clinical medicine ,Heart Rate ,Photoplethysmogram ,0202 electrical engineering, electronic engineering, information engineering ,Humans ,Human multitasking ,Preprocessor ,Photoplethysmography ,Deep cnn ,Multidisciplinary ,Pulse (signal processing) ,business.industry ,Health care ,Models, Cardiovascular ,Blood Pressure Determination ,Pattern recognition ,Blood pressure ,Feature (computer vision) ,Medicine ,020201 artificial intelligence & image processing ,Artificial intelligence ,business ,Biomedical engineering - Abstract
The pulse arrival time (PAT), the difference between the R-peak time of electrocardiogram (ECG) signal and the systolic peak of photoplethysmography (PPG) signal, is an indicator that enables noninvasive and continuous blood pressure estimation. However, it is difficult to accurately measure PAT from ECG and PPG signals because they have inconsistent shapes owing to patient-specific physical characteristics, pathological conditions, and movements. Accordingly, complex preprocessing is required to estimate blood pressure based on PAT. In this paper, as an alternative solution, we propose a noninvasive continuous algorithm using the difference between ECG and PPG as a new feature that can include PAT information. The proposed algorithm is a deep CNN–LSTM-based multitasking machine learning model that outputs simultaneous prediction results of systolic (SBP) and diastolic blood pressures (DBP). We used a total of 48 patients on the PhysioNet website by splitting them into 38 patients for training and 10 patients for testing. The prediction accuracies of SBP and DBP were 0.0 ± 1.6 mmHg and 0.2 ± 1.3 mmHg, respectively. Even though the proposed model was assessed with only 10 patients, this result was satisfied with three guidelines, which are the BHS, AAMI, and IEEE standards for blood pressure measurement devices.
- Published
- 2021
61. Patient-Specific Identification of Optimal Ubiquitous Electrocardiogram (U-ECG) Placement Using a Three-Dimensional Model of Cardiac Electrophysiology.
- Author
-
Ki Moo Lim, Jae Won Jeon, Min-Soo Gyeong, Seung Bae Hong, Byung-Hoon Ko, Sang-Kon Bae, Kunsoo Shin, and Eun Bo Shim
- Published
- 2013
- Full Text
- View/download PDF
62. Application of a convolutional neural network for predicting the occurrence of ventricular tachyarrhythmia using heart rate variability features
- Author
-
Ki Moo Lim, Getu Tadele Taye, and Han-Jeong Hwang
- Subjects
Tachycardia ,Adult ,Male ,Support Vector Machine ,Computer science ,Feature extraction ,lcsh:Medicine ,02 engineering and technology ,030204 cardiovascular system & hematology ,Convolutional neural network ,Article ,Machine Learning ,03 medical and health sciences ,0302 clinical medicine ,Heart Rate ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Computational models ,Heart rate variability ,Humans ,Author Correction ,lcsh:Science ,Aged ,Multidisciplinary ,Artificial neural network ,business.industry ,lcsh:R ,Cardiac arrhythmia ,Pattern recognition ,Arrhythmias, Cardiac ,Middle Aged ,Prognosis ,Support vector machine ,Tachycardia, Ventricular ,020201 artificial intelligence & image processing ,Female ,lcsh:Q ,Artificial intelligence ,Neural Networks, Computer ,medicine.symptom ,business ,Algorithms - Abstract
Predicting the occurrence of ventricular tachyarrhythmia (VTA) in advance is a matter of utmost importance for saving the lives of cardiac arrhythmia patients. Machine learning algorithms have been used to predict the occurrence of imminent VTA. In this study, we used a one-dimensional convolutional neural network (1-D CNN) to extract features from heart rate variability (HRV), thereby to predict the onset of VTA. We also compared the prediction performance of our CNN with other machine leaning (ML) algorithms such as an artificial neural network (ANN), a support vector machine (SVM), and a k-nearest neighbor (KNN), which used 11 HRV features extracted using traditional methods. The proposed CNN achieved relatively higher prediction accuracy of 84.6%, while the ANN, SVM, and KNN algorithms obtained prediction accuracies of 73.5%, 67.9%, and 65.9% using 11 HRV features, respectively. Our result showed that the proposed 1-D CNN could improve VTA prediction accuracy by integrating the data cleaning, preprocessing, feature extraction, and prediction.
- Published
- 2020
- Full Text
- View/download PDF
63. Optimal Classification of Atrial Fibrillation and Congestive Heart Failure Using Machine Learning
- Author
-
Ki Moo Lim and Yunendah Nur Fuadah
- Subjects
medicine.medical_specialty ,business.industry ,Physiology ,Atrial fibrillation ,Hjorth descriptor ,medicine.disease ,Text mining ,congestive heart failure ,machine learning ,entropy-based features ,Heart failure ,Internal medicine ,Physiology (medical) ,Cardiology ,Medicine ,QP1-981 ,atrial fibrillation ,business - Abstract
Cardiovascular disorders, including atrial fibrillation (AF) and congestive heart failure (CHF), are the significant causes of mortality worldwide. The diagnosis of cardiovascular disorders is heavily reliant on ECG signals. Therefore, extracting significant features from ECG signals is the most challenging aspect of representing each condition of ECG signal. Earlier studies have claimed that the Hjorth descriptor is assigned as a simple feature extraction algorithm capable of class separation among AF, CHF, and normal sinus rhythm (NSR) conditions. However, due to noise interference, certain features do not represent the characteristics of the ECG signals. This study addressed this critical gap by applying the discrete wavelet transform (DWT) to decompose the ECG signals into sub-bands and extracting Hjorth descriptor features and entropy-based features in the DWT domain. Therefore, the calculation of Hjorth descriptor and entropy-based features performed on each sub-band will produce more detailed information of ECG signals. The optimization of various classifier algorithms, including k-nearest neighbor (k-NN), support vector machine (SVM), random forest (RF), artificial neural network (ANN), and radial basis function network (RBFN), was investigated to provide the best system performance. This study obtained an accuracy of 100% for the k-NN, SVM, RF, and ANN classifiers, respectively, and 97% for the RBFN classifier. The results demonstrated that the optimization of the classifier algorithm could improve the classification accuracy of AF, CHF, and NSR conditions, compared to earlier studies.
- Published
- 2022
- Full Text
- View/download PDF
64. An Optimal Approach for Heart Sound Classification Using Artificial Neural Network
- Author
-
Yunendah Nur Fuadah and Ki Moo Lim
- Subjects
Artificial neural network ,business.industry ,Computer science ,Pattern recognition ,Artificial intelligence ,Sound classification ,business - Abstract
Heart sound auscultation is one of the most widely used approaches for detecting cardiovascular disorders. Diagnosing abnormalities of heart sound using a stethoscope depends on the physician’s skill and judgement. Several studies have shown promising results in the automatic detection of cardiovascular disorders based on heart sound signals. However, the accuracy performance needs to be improved as automated heart sound classification aids in the early detection and prevention of the dangerous effects of cardiovascular problems. In this study, an optimal heart sound classification method based on machine learning technologies for cardiovascular disease prediction is performed. It consists of three steps: pre-processing that sets the 5 s duration of the Physionet Challenge 2016 datasets, feature extraction using mel-frequency cepstrum coefficients (MFCC), and classification using an artificial neural network (ANN) with one hidden layer that provides low parameter consumption. Ten-fold cross-validation was used to evaluate the performance of the proposed method. The best model obtained 94% accuracy and 93% AUC score, which were assessed using 1626 test datasets. Taken together, the results show that the proposed method obtained excellent classification results and provided low parameter consumption, thereby reducing computational time to facilitate a real-time implementation.
- Published
- 2021
- Full Text
- View/download PDF
65. Influence of Fibrosis Amount and Patterns on Ventricular Arrhythmogenesis and Pumping Efficacy: Computational Study
- Author
-
Aulia Khamas Heikhmakhtiar, Abrha Abebe Tekle, and Ki Moo Lim
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Physiology ,Phase singularity ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,arrhythmogenesis ,Fibrosis ,Physiology (medical) ,Internal medicine ,QP1-981 ,Medicine ,Diffuse type ,Original Research ,fibrosis entropy ,business.industry ,fibrosis ,Stroke volume ,medicine.disease ,030104 developmental biology ,phase singularity ,Diffuse fibrosis ,Heart failure ,stroke volume ,Cardiology ,Myocardial fibrosis ,business - Abstract
Myocardial fibrosis is an integral component of most forms of heart failure. Clinical and computational studies have reported that spatial fibrosis pattern and fibrosis amount play a significant role in ventricular arrhythmogenicity. This study investigated the effect of the spatial distribution of fibrosis and fibrosis amount on the electrophysiology and mechanical performance of the human ventricles. Seventy-five fibrosis distributions comprising diffuse, patchy, and compact fibrosis types that contain 10–50% fibrosis amount were generated. The spatial fibrosis distribution was quantified using the fibrosis entropy (FE) metric. Electrical simulations under reentry conditions induced using the S1–S2 protocol were conducted to investigate the fibrosis arrhythmogenicity. We also performed mechanical simulations to examine the influence of the fibrosis amount and the spatial distribution of fibrosis on the pumping efficacy of the LV. We observed that the mean FE of the compact type is the largest among the three types. The electrical simulation results revealed that the ventricular arrhythmogenicity of diffuse fibrosis depends on the fibrosis amount and marginally on the spatial distribution of fibrosis. Meanwhile, the ventricular arrhythmogenicity of the compact and patchy fibrosis pattern is more reliant on the spatial distribution of fibrosis than on the fibrosis amount. The average number of phase singularities (PSs) in the compact fibrosis pattern was the highest among the three patterns of fibrosis. The diffuse type of fibrosis has the lowest average number of PSs than that in the patchy and compact fibrosis. The reduction in the stroke volume (SV) showed high influence from the electrical instabilities induced by the fibrosis amount and pattern. The compact fibrosis exhibited the lowest SV among the three patterns except in the 40% fibrosis amount. In conclusion, the fibrosis pattern is as crucial as the fibrosis amount for sustaining and aggravating ventricular arrhythmogenesis.
- Published
- 2020
66. Computational analysis of the effect of KCNH2 L532P mutation on ventricular electromechanical behaviors
- Author
-
Ki Moo Lim, Aulia Khamas Heikhmakhtiar, and Nida Dusturia
- Subjects
medicine.medical_specialty ,ERG1 Potassium Channel ,Heart Ventricles ,hERG ,Action Potentials ,030204 cardiovascular system & hematology ,Contractility ,03 medical and health sciences ,Electrocardiography ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,030212 general & internal medicine ,Zebrafish ,medicine.diagnostic_test ,biology ,Chemistry ,Models, Cardiovascular ,Short QT syndrome ,Reentry ,Zebrafish Proteins ,medicine.disease ,Ether-A-Go-Go Potassium Channels ,Electrophysiology ,medicine.anatomical_structure ,Ventricle ,Mutation (genetic algorithm) ,Mutation ,Cardiology ,biology.protein ,Cardiology and Cardiovascular Medicine - Abstract
The KCNH2 L532P mutation is an alteration in the IKr channel that is associated with short QT syndrome and atrial fibrillation in zebrafish. In preliminary studies, the electrophysiological effects of the hERG L532P mutation were investigated using a mathematical model in a single-cell and 2D sheet medium. The objective of this study was to quantify the effects of the KCNH2 L532P mutation on the 3D ventricular electrophysiological behavior and the mechanical pumping responses. We used a realistic three-dimensional ventricular electrophysiological-mechanical model, which was adjusted into two conditions: the wild-type (WT) condition, i.e., the original case of the Tusscher et al. model, and the L532P mutation condition, with modification of the original IKr equation. The action potential duration (APD) in the mutant ventricle was reduced by 73% owing to the significant increase of the IKr current density. In the 3D simulation, the L532P mutation maintained the sustainability of reentrant waves; however, the reentry was terminated in the WT condition. The contractility of the ventricle with L532P mutation was significantly reduced compared with that in WT which results in sustain shivering heart during reentry condition. The reduction of the contractility was associated with the shortening APD which simultaneously shortened the duration of the Ca2+ channel opening. In conclusion, the ventricle with KCNH2 L532P mutation is prone to reentry generation with a sustained chaotic condition, and the mutation significantly reduced the pumping performance of the ventricles.
- Published
- 2020
67. Author Correction: Application of a convolutional neural network for predicting the occurrence of ventricular tachyarrhythmia using heart rate variability features
- Author
-
Ki Moo Lim, Han-Jeong Hwang, and Getu Tadele Taye
- Subjects
medicine.medical_specialty ,Multidisciplinary ,business.industry ,Ventricular Tachyarrhythmias ,Science ,Convolutional neural network ,Internal medicine ,Cardiology ,Medicine ,Heart rate variability ,business - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
- Full Text
- View/download PDF
68. A Pilot Study on Linking Tissue Mechanics with Load-Dependent Collagen Microstructures in Porcine Tricuspid Valve Leaflets
- Author
-
Devin W. Laurence, Harold M. Burkhart, Arshid Mir, Rheal A. Towner, Colton J. Ross, Samuel Jett, Luke T. Hudson, Yi Wu, Ki Moo Lim, Ryan D. Baumwart, Chung-Hao Lee, and Katherine Kramer
- Subjects
Materials science ,0206 medical engineering ,Bioengineering ,02 engineering and technology ,030204 cardiovascular system & hematology ,lcsh:Technology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Collagen fiber ,spatial alignment ,medicine ,Tissue mechanics ,cardiovascular diseases ,lcsh:QH301-705.5 ,tricuspid regurgitation ,polarized spatial frequency domain imaging ,Tricuspid valve ,lcsh:T ,material anisotropy ,Biomechanics ,technology, industry, and agriculture ,Microstructure ,biaxial mechanical testing ,020601 biomedical engineering ,Radial direction ,medicine.anatomical_structure ,lcsh:Biology (General) ,collagen fiber reorientation ,cardiovascular system ,Right atrium ,lipids (amino acids, peptides, and proteins) ,Biomedical engineering - Abstract
The tricuspid valve (TV) is composed of three leaflets that coapt during systole to prevent deoxygenated blood from re-entering the right atrium. The connection between the TV leaflets&rsquo, microstructure and the tissue-level mechanical responses has yet to be fully understood in the TV biomechanics society. This pilot study sought to examine the load-dependent collagen fiber architecture of the three TV leaflets, by employing a multiscale, combined experimental approach that utilizes tissue-level biaxial mechanical characterizations, micro-level collagen fiber quantification, and histological analysis. Our results showed that the three TV leaflets displayed greater extensibility in the tissues&rsquo, radial direction than in the circumferential direction, consistently under different applied biaxial tensions. Additionally, collagen fibers reoriented towards the direction of the larger applied load, with the largest changes in the alignment of the collagen fibers under radially-dominant loading. Moreover, collagen fibers in the belly region of the TV leaflets were found to experience greater reorientations compared to the tissue region closer to the TV annulus. Furthermore, histological examinations of the TV leaflets displayed significant regional variation in constituent mass fraction, highlighting the heterogeneous collagen microstructure. The combined experimental approach presented in this work enables the connection of tissue mechanics, collagen fiber microstructure, and morphology for the TV leaflets. This experimental methodology also provides a new research platform for future developments, such as multiscale models for the TVs, and the design of bioprosthetic heart valves that could better mimic the mechanical, microstructural, and morphological characteristics of the native tricuspid valve leaflets.
- Published
- 2020
- Full Text
- View/download PDF
69. Influence of Fibrosis Amount and Patterns on Ventricular Arrythmogenesis and Pumping Efficacy: Computational Study
- Author
-
Abrha Abebe Tekle and Ki Moo Lim
- Abstract
Background and aims: Clinical and computational studies have reported that spatial fibrosis pattern and fibrosis amount play a significant role in ventricular arrhythmogenicity. Nonetheless, the underlying mechanisms of arrhythmogenicity of fibrosis are not known accurately. In addition, we believe that the effect of different fibrosis types and fibrosis amount on the cardiac mechanical performance requires a further investigation. Therefore, this study investigated the effect of spatial distribution of fibrosis and fibrosis amount on the electrical and mechanical performance of the left ventricle (LV). Methods: We employed a human ventricular model that simulates both the electrophysiological and the mechanical contraction characteristics of the ventricle. The electrophysiological conduction model mimics the exchange of ions through the plasma membrane of myocardial cells whereas the mechanical contraction model simulates the mechanical cardiac response. Seventy-five fibrosis distributions comprising diffuse, patchy, and compact fibrosis types that contain 10%–50% fibrosis amount were generated to cover a wide range of fibrosis cases. The spatial fibrosis distribution in the human ventricular model was quantified using fibrosis entropy (FE) metric. Then, electrophysiological simulations under reentry conditions induced using the S1-S2 protocol were conducted to investigate the correlation between different patterns of fibrosis and ventricular arrhythmogenicity. Finally, we compared the mechanical response by conducting mechanical simulations to examine the influence of the fibrosis amount and spatial distribution of fibrosis on the pumping efficacy of the LV by extracting the calcium information from the electrophysiological simulation. Results: We observed that the spatial patchy fibrosis distribution was more chaotic (higher mean FE) than those of the compact and diffuse types. The electrical simulation results revealed that the ventricular arrhythmogenicity of diffuse fibrosis depends on the fibrosis amount and marginally on the spatial distribution of fibrosis. Meanwhile, the ventricular arrhythmogenicity of the compact and patchy fibrosis types is reliant on the spatial distribution of fibrosis than on the fibrosis amount. The average number of phase singularities in the electrical simulations with compact fibrosis was higher than those with patchy and diffuse fibrosis. As a result, compact fibrosis resulted a lower stroke volume (SV) of the LV, whereas the diffuse fibrosis resulted in a higher SV of the LV. The reduction in the stroke volume (SV) of the LV was linearly correlated to the electrical instabilities induced by the fibrosis amount and spatial distribution of fibrosis. Conclusion: The increase in the amount of diffuse, patchy and compact fibrosis in the myocardium increased the electrical instability and likely decreased the pumping efficacy of LV. Moreover, the effect fibrosis pattern on ventricular arrhythmogenesis was more significant in compact and patchy fibrosis types than in diffuse fibrosis.
- Published
- 2020
- Full Text
- View/download PDF
70. Relationship Between Electrical Instability and Pumping Performance During Ventricular Tachyarrhythmia: Computational Study
- Author
-
Ki Moo Lim and Da Un Jeong
- Subjects
Physiology ,Stochastic modelling ,0206 medical engineering ,dominant frequency ,computational study ,02 engineering and technology ,030204 cardiovascular system & hematology ,Electrical phenomena ,lcsh:Physiology ,action potential duration ,Contractility ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,stochastic model ,Original Research ,Physics ,lcsh:QP1-981 ,Regression analysis ,ventricular tachyarrhythmia ,Reentry ,Stroke volume ,Mechanics ,020601 biomedical engineering ,Amplitude ,phase singularity ,filament ,Multicollinearity ,cardiovascular system - Abstract
There are representative electrical parameters for understanding the mechanism of reentrant waves in studies on tachyarrhythmia, namely the action potential duration (APD), dominant frequency, phase singularity, and filament. However, there are no studies that have directly identified the correlation between these electrophysiological parameters and cardiac contractility. Therefore, we have identified individual and integrative correlations between these electrical phenomena and contractility during tachyarrhythmia by deriving regression equations and also investigated the electrophysiological parameters affecting cardiac contractility during tachyarrhythmia. We simulated ventricular tachyarrhythmia with 48 types of electrical patterns by applying four reentry generation methods and changing the electrical conductivity of the potassium channel, which has the greatest effect on ventricular tissue. The mechanical responses reflecting electrical complexity were obtained through deterministic simulations of excitation–contraction coupling. We used the stroke volume and amplitude of myocardial tension (ampTens) as the variables representing contractility. We derived stochastic models through single- and multivariable regression analyses to identify the electrical parameters affecting contractility during tachyarrhythmia. In single-variable regression analysis, the APD, dominant frequency, and filament, excluding phase singularity, have statistically significant correlations with the stroke volume and ampTens. Among them, the APD has the maximum influence on these two mechanical parameters (standard beta coefficient: 0.859 for stroke volume, 0.930 for ampTens). The stochastic model using all four electrical parameters fails to accurately predict contractility owing to the multicollinearity between the APD and dominant frequency. We have rederived the multi-variable stochastic model using three electrical parameters without the APD. The filament has the greatest effect on the stroke volume stochastically (standard beta coefficient: 0.853 and 0.752). The dominant frequency has the greatest effect on ampTens statistically (standard beta coefficient: −0.813). We conclude that among the electrical parameters, the APD has the highest individual influence on mechanical contraction, and the filament has the highest integrative influence in both statistical terms.
- Published
- 2020
- Full Text
- View/download PDF
71. Proarrhythmogenic Effect of the L532P and N588K
- Author
-
Aulia Khamas, Heikhmakhtiar, Abebe Tekle, Abrha, Da Un, Jeong, and Ki Moo, Lim
- Subjects
N588K Mutation ,ERG1 Potassium Channel ,Models, Cardiovascular ,Biomedical Engineering ,L532P Mutation ,Action Potentials ,Arrhythmias, Cardiac ,Heart ,KCNH2 Gene Mutation ,Polymorphism, Single Nucleotide ,Imaging, Three-Dimensional ,cardiovascular system ,Humans ,Original Article ,Three-dimensional Heart Modeling - Abstract
Background Atrial arrhythmia is a cardiac disorder caused by abnormal electrical signaling and transmission, which can result in atrial fibrillation and eventual death. Genetic defects in ion channels can cause myocardial repolarization disorders. Arrhythmia-associated gene mutations, including KCNH2 gene mutations, which are one of the most common genetic disorders, have been reported. This mutation causes abnormal QT intervals by a gain of function in the rapid delayed rectifier potassium channel (IKr). In this study, we demonstrated that mutations in the KCNH2 gene cause atrial arrhythmia. Methods The N588K and L532P mutations were induced in the Courtemanche-Ramirez-Nattel (CRN) cell model, which was subjected to two-dimensional and three-dimensional simulations to compare the electrical conduction patterns of the wild-type and mutant-type genes. Results In contrast to the early self-termination of the wild-type conduction waveforms, the conduction waveform of the mutant-type retained the reentrant wave (N588K) and caused a spiral break-up, resulting in irregular wave generation (L532P). Conclusion The present study confirmed that the KCNH2 gene mutation increases the vulnerability of the atrial tissue for arrhythmia., Graphical Abstract
- Published
- 2020
72. Proarrhythmogenic Effect of the L532P and N588K KCNH2 Mutations in the Human Heart Using a 3D Electrophysiological Model
- Author
-
Da Un Jeong, Ki Moo Lim, Abebe Tekle Abrha, and Aulia Khamas Heikhmakhtiar
- Subjects
medicine.medical_specialty ,Mutation ,business.industry ,Human heart ,Atrial fibrillation ,General Medicine ,Gene mutation ,medicine.disease ,medicine.disease_cause ,Potassium channel ,03 medical and health sciences ,Electrophysiology ,0302 clinical medicine ,Internal medicine ,cardiovascular system ,medicine ,Cardiology ,030212 general & internal medicine ,business ,Gene ,Ion channel - Abstract
Background Atrial arrhythmia is a cardiac disorder caused by abnormal electrical signaling and transmission, which can result in atrial fibrillation and eventual death. Genetic defects in ion channels can cause myocardial repolarization disorders. Arrhythmia-associated gene mutations, including KCNH2 gene mutations, which are one of the most common genetic disorders, have been reported. This mutation causes abnormal QT intervals by a gain of function in the rapid delayed rectifier potassium channel (IKr). In this study, we demonstrated that mutations in the KCNH2 gene cause atrial arrhythmia. Methods The N588K and L532P mutations were induced in the Courtemanche-Ramirez-Nattel (CRN) cell model, which was subjected to two-dimensional and three-dimensional simulations to compare the electrical conduction patterns of the wild-type and mutant-type genes. Results In contrast to the early self-termination of the wild-type conduction waveforms, the conduction waveform of the mutant-type retained the reentrant wave (N588K) and caused a spiral break-up, resulting in irregular wave generation (L532P). Conclusion The present study confirmed that the KCNH2 gene mutation increases the vulnerability of the atrial tissue for arrhythmia.
- Published
- 2020
- Full Text
- View/download PDF
73. Comparison of Electromechanical Delay during Ventricular Tachycardia and Fibrillation under Different Conductivity Conditions Using Computational Modeling
- Author
-
Ki Moo Lim and Aulia Khamas Heikhmakhtiar
- Subjects
Tachycardia ,medicine.medical_specialty ,Article Subject ,Heart Ventricles ,030303 biophysics ,0206 medical engineering ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Action Potentials ,02 engineering and technology ,Ventricular tachycardia ,General Biochemistry, Genetics and Molecular Biology ,Membrane Potentials ,03 medical and health sciences ,Electrocardiography ,Imaging, Three-Dimensional ,Heart Conduction System ,Internal medicine ,medicine ,Humans ,Sinus rhythm ,Computer Simulation ,Systole ,Isovolumetric contraction ,Fibrillation ,0303 health sciences ,General Immunology and Microbiology ,business.industry ,Applied Mathematics ,Models, Cardiovascular ,Computational Biology ,General Medicine ,medicine.disease ,020601 biomedical engineering ,Myocardial Contraction ,Electrophysiological Phenomena ,Modeling and Simulation ,Heart failure ,Ventricular fibrillation ,Ventricular Fibrillation ,Cardiology ,Tachycardia, Ventricular ,medicine.symptom ,business ,Research Article - Abstract
Electromechanical delay (EMD) is the time interval between local myocyte depolarization and the onset of myofiber shortening. Previously, researchers measured EMD during sinus rhythm and ectopic pacing in normal and heart failure conditions. However, to our knowledge, there are no reports regarding EMD during another type of rhythms or arrhythmia. The goal of this study was to quantify EMD during sinus rhythm, tachycardia, and ventricular fibrillation conditions. We hypothesized that EMD under sinus rhythm is longer due to isovolumetric contraction which is imprecise during arrhythmia. We used a realistic model of 3D electromechanical ventricles. During sinus rhythm, EMD was measured in the last cycle of cardiac systole under steady conditions. EMD under tachycardia and fibrillation conditions was measured during the entire simulation, resulting in multiple EMD values. We assessed EMD for the following 3 conduction velocities (CVs): 31 cm/s, 51 cm/s, and 69 cm/s. The average EMD during fibrillation condition was the shortest corresponding to 53.45 ms, 55.07 ms, and 50.77 ms, for the CVs of 31 cm/s, 51 cm/s, and 69 cm/s, respectively. The average EMD during tachycardia was 58.61 ms, 58.33 ms, and 52.50 ms for the three CVs. Under sinus rhythm with action potential duration restitution (APDR) slope 0.7, the average EMD was 66.35 ms, 66.41 ms, and 66.60 ms in line with the three CVs. This result supports our hypothesis that EMD under sinus rhythm is longer than that under tachyarrhythmia conditions. In conclusion, this study observed and quantified EMD under tachycardia and ventricular fibrillation conditions. This simulation study has widened our understanding of EMD in 3D ventricles under chaotic conditions.
- Published
- 2020
74. Influence of LVAD function on mechanical unloading and electromechanical delay: a simulation study
- Author
-
Eun Bo Shim, Natalia A. Trayanova, Aulia Khamas Heikhmakhtiar, Ah Jin Ryu, Ki Moo Lim, and Kwang-Soup Song
- Subjects
medicine.medical_specialty ,Time Factors ,Systole ,Ventricular electromechanical model ,medicine.medical_treatment ,0206 medical engineering ,Biomedical Engineering ,Blood Pressure ,Heart failure ,Left ventricular assist device ,02 engineering and technology ,030204 cardiovascular system & hematology ,Membrane Potentials ,Weight-Bearing ,03 medical and health sciences ,Adenosine Triphosphate ,0302 clinical medicine ,Diastole ,Internal medicine ,Calcium transient ,medicine ,Humans ,Computer Simulation ,business.industry ,Myocardium ,Models, Cardiovascular ,Human physiology ,equipment and supplies ,medicine.disease ,020601 biomedical engineering ,Computer Science Applications ,medicine.anatomical_structure ,Ventricle ,Ventricular assist device ,Cardiology ,Aortic pressure ,Calcium ,Original Article ,Heart-Assist Devices ,business - Abstract
This study hypothesized that a left ventricular assist device (LVAD) shortens the electromechanical delay (EMD) by mechanical unloading. The goal of this study is to examine, by computational modeling, the influence of LVAD on EMD for four heart failure (HF) cases ranging from mild HF to severe HF. We constructed an integrated model of an LVAD-implanted cardiovascular system, then we altered the Ca2+ transient magnitude, with scaling factors 1, 0.9, 0.8, and 0.7 representing HF1, HF2, HF3, and HF4, respectively, in order of increasing HF severity. The four HF conditions are classified into two groups. Group one is the four HF conditions without LVAD, and group two is the conditions treated with continuous LVAD pump. The single-cell mechanical responses showed that EMD was prolonged with the higher load. The findings indicated that in group one, the HF-induced Ca2 + transient remodeling prolonged the mechanical activation time (MAT) and decreased the contractile tension, which reduced the left ventricle (LV) pressure, and increased the end-diastolic strain. In group two, LVAD shortened MAT of the ventricles. Furthermore, LVAD reduced the contractile tension, and end-diastolic strain, but increased the aortic pressure. The computational study demonstrated that LVAD shortens EMD by mechanical unloading of the ventricle. Electronic supplementary material The online version of this article (10.1007/s11517-017-1730-y) contains supplementary material, which is available to authorized users.
- Published
- 2017
- Full Text
- View/download PDF
75. Parallel Computing Performance of a 3D Cardiac Tissue Model.
- Author
-
Eun Bo Shim, Soon-Sung Kwon, Ki Moo Lim, and Chan-Hyun Youn
- Published
- 2006
- Full Text
- View/download PDF
76. Computational Study to Identify the Effects of the KCNJ2 E299V Mutation in Cardiac Pumping Capacity
- Author
-
Da Un Jeong, Ki Moo Lim, and Jiyeong Lee
- Subjects
medicine.medical_specialty ,Article Subject ,Heart Ventricles ,Computer applications to medicine. Medical informatics ,Finite Element Analysis ,R858-859.7 ,030204 cardiovascular system & hematology ,Gene mutation ,QT interval ,General Biochemistry, Genetics and Molecular Biology ,Contractility ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Sinus rhythm ,Computer Simulation ,Potassium Channels, Inwardly Rectifying ,030304 developmental biology ,Fibrillation ,0303 health sciences ,General Immunology and Microbiology ,Chemistry ,Applied Mathematics ,Models, Cardiovascular ,Computational Biology ,Short QT syndrome ,Arrhythmias, Cardiac ,General Medicine ,medicine.disease ,Myocardial Contraction ,Biomechanical Phenomena ,Electrophysiological Phenomena ,Modeling and Simulation ,Mutation (genetic algorithm) ,Ventricular fibrillation ,Mutation ,Cardiology ,medicine.symptom ,Research Article - Abstract
The KCNJ2 gene mutations induce short QT syndrome (SQT3) by directly increasing the IK1 current. There have been many studies on the electrophysiological effects of mutations such as the KCNJ2 D172N that cause the SQT3. However, the KCNJ2 E299V mutation is distinguished from other representative gene mutations that can induce the short QT syndrome (SQT3) in that it increased IK1 current by impairing the inward rectification of K+ channels. The studies of the electromechanical effects on myocardial cells and mechanisms of E299V mutations are limited. Therefore, we investigated the electrophysiological changes and the concomitant mechanical responses according to the expression levels of the KCNJ2 E299V mutation during sinus rhythm and ventricular fibrillation. We performed excitation-contraction coupling simulations using a human ventricular model with both electrophysiological and mechanical properties. In order to observe the electromechanical changes due to the expression of KCNJ2 E299V mutation, the simulations were performed under normal condition (WT), heterogeneous mutation condition (WT/E299V), and pure mutation condition (E299V). First, a single-cell simulation was performed in three types of ventricular cells (endocardial cell, midmyocardial cell, and epicardial cell) to confirm the electrophysiological changes and arrhythmogenesis caused by the KCNJ2 E299V mutation. In three-dimensional sinus rhythm simulations, we compared electrical changes and the corresponding changes in mechanical performance caused by the expression level of E299V mutation. Then, we observed the electromechanical properties of the E299V mutation during ventricular fibrillation using the three-dimensional reentry simulation. The KCNJ2 E299V mutation accelerated the opening of the IK1 channel and increased IK1 current, resulting in a decrease in action potential duration. Accordingly, the QT interval was reduced by 48% and 60% compared to the WT condition, for the WT/E299V and E299V conditions, respectively. During sustained reentry, the wavelength was reduced due to the KCNJ2 E299V mutation. Furthermore, there was almost no ventricular contraction in both WT/E299V and E299V conditions. We concluded that in both sinus rhythm and fibrillation, the KCNJ2 E299V mutation results in very low contractility regardless of the expression level of mutation and increases the risk of cardiac arrest and cardiac death.
- Published
- 2019
77. Machine Learning Approach to Predict Ventricular Fibrillation Based on QRS Complex Shape
- Author
-
Ki Moo Lim, Eun Bo Shim, Han-Jeong Hwang, and Getu Tadele Taye
- Subjects
medicine.medical_specialty ,QRS complex shape ,Defibrillation ,Physiology ,medicine.medical_treatment ,02 engineering and technology ,Ventricular tachycardia ,lcsh:Physiology ,03 medical and health sciences ,QRS complex ,0302 clinical medicine ,Physiology (medical) ,Internal medicine ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,prediction accuracy ,Heart rate variability ,QRS complex singed area ,cardiovascular diseases ,Original Research ,lcsh:QP1-981 ,Artificial neural network ,business.industry ,R-peak amplitude ,ventricular tachyarrhythmia ,medicine.disease ,ventricular fibrillation ,Feature (computer vision) ,Ventricular fibrillation ,Cardiology ,cardiovascular system ,020201 artificial intelligence & image processing ,ventricular tachycardia ,business ,030217 neurology & neurosurgery ,circulatory and respiratory physiology - Abstract
Early prediction of the occurrence of ventricular tachyarrhythmia (VTA) has a potential to save patients’ lives. VTA includes ventricular tachycardia (VT) and ventricular fibrillation (VF). Several studies have achieved promising performances in predicting VT and VF using traditional heart rate variability (HRV) features. However, as VTA is a life-threatening heart condition, its prediction performance requires further improvement. To improve the performance of predicting VF, we used the QRS complex shape features, and traditional HRV features were also used for comparison. We extracted features from 120-s-long HRV and electrocardiogram (ECG) signals (QRS complex signed area and R-peak amplitude) to predict the VF onset 30 s before its occurrence. Two artificial neural network (ANN) classifiers were trained and tested with two feature sets derived from HRV and the QRS complex shape based on a 10-fold cross-validation. The prediction accuracy estimated using 11 HRV features was 72%, while that estimated using four QRS complex shape features yielded a high prediction accuracy of 98.6%. The QRS complex shape could play a significant role in performance improvement of predicting the occurrence of VF. Thus, the results of our study can be considered by the researchers who are developing an application for an implantable cardiac defibrillator (ICD) when to begin ventricular defibrillation.
- Published
- 2019
78. Artificial Differentiation of Hippocampal Neurons by Electrical Stimulation on Graphene Electrode
- Author
-
Joon-Mook Lim, Hong Gi Oh, Ki Moo Lim, Kwang Soup Song, Dae Hoon Kim, and Woo Hwan Park
- Subjects
Materials science ,Neurite ,Cellular differentiation ,Biomedical Engineering ,Hippocampus ,Bioengineering ,Stimulation ,02 engineering and technology ,Hippocampal formation ,law.invention ,law ,General Materials Science ,Electrodes ,Neurons ,Graphene ,Cell Differentiation ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Electric Stimulation ,Electrode ,Biophysics ,Graphite ,0210 nano-technology ,Intracellular - Abstract
Electrical stimulation therapy is a promising method for treating neurological diseases. This method induces the activity and differentiation of nerve cells by the direct or indirect transmission of an electrical signal through biomedical electrodes. We demonstrated the efficacy of a graphene sheet as a bioelectrode to differentiate neurites from hippocampal neuron, through electrical stimulation. In order to the artificially induce the differentiation of hippocampal neurons, we directly transmitted electrical signals of square pulse through the graphene electrode to directly stimulate neurons cultured onto graphene surface. Compared to cell culture plates, the average length of differentiated neurites increased 111.1% on pristine graphene with electrical stimulation. And the average number of differentiated neurites on a single cell increased to 281.9% on oxygenated graphene with electrical stimulation. Electrical stimulation with graphene electrodes promoted the differentiation of neurites and activated the production of intercellular networks of hippocampal neurons.
- Published
- 2019
79. Prediction of the mechanical response of cardiac alternans by using an electromechanical model of human ventricular myocytes
- Author
-
Ki Moo Lim and Jun Ik Park
- Subjects
Simulation study ,medicine.medical_specialty ,Myofilament ,Electrical alternans ,lcsh:Medical technology ,Heart Ventricles ,Biomedical Engineering ,Diastole ,Isometric exercise ,Biomaterials ,Electrocardiography ,Excitation–contraction coupling model ,Internal medicine ,medicine ,Humans ,Ventricular Function ,Myocytes, Cardiac ,Radiology, Nuclear Medicine and imaging ,Mechanical Phenomena ,Radiological and Ultrasound Technology ,Resting state fMRI ,Chemistry ,Tension (physics) ,Research ,Models, Cardiovascular ,Basic cycle length ,General Medicine ,Biomechanical Phenomena ,Electrophysiological Phenomena ,Human ventricular myocyte ,Coupling (electronics) ,Electrophysiology ,lcsh:R855-855.5 ,Cardiology ,Alternans - Abstract
Purpose Although the quantitative analysis of electromechanical alternans is important, previous studies have focused on electrical alternans, and there is a lack quantitative analysis of mechanical alternans at the subcellular level according to various basic cycle lengths (BCLs). Therefore, we used the excitation–contraction (E–C) coupling model of human ventricular cells to quantitatively analyze the mechanical alternans of ventricular cells according to various BCLs. Methods To implement E–C coupling, we used calcium transient data, which is the output data of electrical simulation using the electrophysiological model of human ventricular myocytes, as the input data of mechanical simulation using the contractile myofilament dynamics model. Moreover, we applied various loads on ventricular cells for implementation of isotonic and isometric contraction. Results As the BCL was reduced from 1000 to 200 ms at 30 ms increments, mechanical alternans, as well as electrical alternans, were observed. At this time, the myocardial diastolic tension increased, and the contractile ATP consumption rate remained greater than zero even in the resting state. Furthermore, the time of peak tension, equivalent cell length, and contractile ATP consumption rate were all reduced. There are two tendencies that endocardial, mid-myocardial, and epicardial cells have the maximum amplitude of tension and the peak systolic tension begins to appear at a high rate under the isometric condition at a particular BCL. Conclusions We observed mechanical alternans of ventricular myocytes as well as electrical alternans, and identified unstable conditions associated with mechanical alternans. We also determined the amount of BCL given to each ventricular cell to generate stable and high tension state in the case of isometric contraction.
- Published
- 2019
- Full Text
- View/download PDF
80. Effect of myocardial heterogeneity on ventricular electro-mechanical responses: a computational study
- Author
-
Seong Wook Choi, Ki Moo Lim, Kwang Soup Song, and Nida Dusturia
- Subjects
Cardiac output ,lcsh:Medical technology ,Materials science ,0206 medical engineering ,Biomedical Engineering ,02 engineering and technology ,Cardiac arrhythmia ,Instability ,Biomaterials ,Contractility ,Humans ,Ventricular Function ,Radiology, Nuclear Medicine and imaging ,Sinus rhythm ,cardiovascular diseases ,Heterogeneous ventricular models ,Endocardium ,Mechanical Phenomena ,Radiological and Ultrasound Technology ,Research ,Models, Cardiovascular ,General Medicine ,Reentry ,Epicardium ,020601 biomedical engineering ,Biomechanical Phenomena ,Electrophysiological Phenomena ,Electrophysiology ,lcsh:R855-855.5 ,cardiovascular system ,Mid-myocardium ,Biomedical engineering - Abstract
Background The heart wall exhibits three layers of different thicknesses: the outer epicardium, mid-myocardium, and inner endocardium. Among these layers, the mid-myocardium is typically the thickest. As indicated by preliminary studies, heart-wall layers exhibit various characteristics with regard to electrophysiology, pharmacology, and pathology. Construction of an accurate three-dimensional (3D) model of the heart is important for predicting physiological behaviors. However, the wide variability of myocardial shapes and the unclear edges between the epicardium and soft tissues are major challenges in the 3D model segmentation approach for identifying the boundaries of the epicardium, mid-myocardium, and endocardium. Therefore, this results in possible variations in the heterogeneity ratios between the epicardium, mid-myocardium, and endocardium. The objective of this study was to observe the effects of different thickness ratios of the epicardium, mid-myocardium, and endocardium on cardiac arrhythmogenesis, reentry instability, and mechanical responses during arrhythmia. Methods We used a computational method and simulated three heterogeneous ventricular models: Model 1 had the thickest M cell layer and thinnest epicardium and endocardium. Model 2 had intermediate layer thicknesses. Model 3 exhibited the thinnest mid-myocardium and thickest epicardium and endocardium. Electrical and mechanical simulations of the three heterogeneous models were performed under normal sinus rhythm and reentry conditions. Results Model 1 exhibited the highest probability of terminating reentrant waves, and Model 3 exhibited to experience greater cardiac arrhythmia. In the reentry simulation, at 8 s, Model 3 generated the largest number of rotors (eight), while Models 1 and 2 produced five and seven rotors, respectively. There was no significant difference in the cardiac output obtained during the sinus rhythm. Under the reentry condition, the highest cardiac output was generated by Model 1 (19 mL/s), followed by Model 2 (9 mL/s) and Model 3 (7 mL/s). Conclusions A thicker mid-myocardium led to improvements in the pumping efficacy and contractility and reduced the probability of cardiac arrhythmia. Conversely, thinner M cell layers generated more unstable reentrant spiral waves and hindered the ventricular pumping.
- Published
- 2019
- Full Text
- View/download PDF
81. Mathematical analysis of the effects of valvular regurgitation on the pumping efficacy of continuous and pulsatile left ventricular assist devices
- Author
-
Ki Moo Lim, Yoo Seok Kim, Hyeong-Gyun Kim, Eun-Hye Kim, Kwang-Soup Song, and Eun Bo Shim
- Subjects
medicine.medical_specialty ,Cardiac output ,Windkessel model ,Pulsatile flow ,030204 cardiovascular system & hematology ,Pulmonary vein ,03 medical and health sciences ,0302 clinical medicine ,Afterload ,Internal medicine ,medicine.artery ,left ventricular assist device ,medicine ,cardiovascular diseases ,030212 general & internal medicine ,lcsh:Miscellaneous systems and treatments ,Mitral regurgitation ,Aorta ,business.industry ,musculoskeletal, neural, and ocular physiology ,lcsh:RZ409.7-999 ,equipment and supplies ,aortic regurgitation ,medicine.anatomical_structure ,Complementary and alternative medicine ,Ventricle ,Anesthesia ,Pulmonary artery ,cardiovascular system ,Cardiology ,Original Article ,mitral regurgitation ,business ,regurgitation severity - Abstract
Highlights • We numerically investigated the physiological relationship between the severity of regurgitation and the effect of a left ventricular assist device (LVAD) on cardiovascular system responses. • Under conditions of mitral regurgitation, the effects of both pulsatile and continuous LVAD treatment on ventricular unloading were significant. • Under conditions of aortic regurgitation (AR), the effects of the LVADs on ventricular unloading were not significant. The effects of LVAD treatment decreased according to the severity of AR., Background A left ventricular assist device (LVAD) is normally contraindicated in significant aortic regurgitation (AR) and requires intraoperative valve repair or exclusion. Nevertheless, AR can coexist with an LVAD, so a valid question when asked might still be of clinical significance. The purpose of this study is to analyze the effects of valve regurgitation on the pumping efficacy of continuous and pulsatile LVADs with a computational method. Methods A cardiovascular model was developed based on the Windkessel model, which reflects the hemodynamic flow resistance and the blood wall elasticity. Using the Windkessel model, important cardiovascular components, such as the right atrium, right ventricle, pulmonary artery, pulmonary vein, left atrium (LA), left ventricle (LV), aorta, and branching blood vessels, were expressed. Results In the case of AR, continuous and pulsatile LVADs improved cardiac output and reduced mechanical load slightly. In the case of mitral regurgitation, the LVADs improved cardiac output (cardiac outputs were about 5 L/min regardless of the severity of regurgitation) and reduced afterload significantly. Conclusion AR reduced both continuous and pulsatile LVAD function significantly while mitral regurgitation did not affect their pumping efficacy.
- Published
- 2016
- Full Text
- View/download PDF
82. A Study on Outputting the Shape of Carpus using Medical Image and 3D Printer
- Author
-
Hyeong Gyun Kim, Gha Jung Kim, Joon Koo Choi, Dong Hee Hon, and Ki Moo Lim
- Subjects
DICOM ,Multidisciplinary ,business.industry ,Computer science ,Medical imaging ,Calipers ,Computer vision ,Artificial intelligence ,business ,Imaging phantom ,Experimental research ,3d printer ,Image (mathematics) - Abstract
Background/Objectives: This research is an experimental research to output the DICOM image of carpus through 3D printer and to confirm the identity of 3D medical image and the shape. An experimental analysis was conducted as follows: First, the size on the 3D medical image and the length of the shape output through 3D printer were measured and compared using Digital Vernier Calipers; second, the anatomical forms and shapes before and after an experimental study were evaluated based on a survey of evaluators composed of 10 medical imaging experts and the results were reflected. Methods/Statistical Analysis: The purpose of an experiment in this research is to contribute to improving learning effects by manufacturing a phantom for medical learning about carpus and to establishing a clinical diagnosis and treatment plan. Carpus was used as the object of an experiment. The reason is that since carpus has the very irregular and smallest bones in human body, it has advantages in comparing the precision of a manufactured shape and improves educational understanding in medical learning. Findings: According to the research results, the length of the longitudinal plane in carpus used for the experiment was 120 mm equally in the medical image and the shape output through 3D printer. As the results of comparing the form and shape of carpus output through 3D printer with DICOM image of carpus, radiologists represented 16% for Good and 84% for Very Good and radiological technicians represented 2% for Fair, 20% for Good and 78% for Very Good. Improvements: In conclusion, if the material equivalent to human body can be developed and its shape can be output through 3D printer, the learning effects through a phantom is expected to be greatly improved.
- Published
- 2016
- Full Text
- View/download PDF
83. Microarray of neuroblastoma cells on the selectively functionalized nanocrystalline diamond thin film surface
- Author
-
Young-Sang Park, Ki Moo Lim, Min-Hye Kim, Hong-Gi Oh, Dae-Hoon Kim, Da-Som Lee, Hyeong-Guk Son, and Kwang-Soup Song
- Subjects
Surface (mathematics) ,Materials science ,General Physics and Astronomy ,chemistry.chemical_element ,Nanotechnology ,02 engineering and technology ,Surfaces and Interfaces ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Oxygen ,0104 chemical sciences ,Surfaces, Coatings and Films ,Chemical engineering ,chemistry ,Cell culture ,Fluorine ,Surface modification ,Wetting ,Thin film ,0210 nano-technology ,Cell adhesion - Abstract
Nanocrystalline diamond (NCD) film surfaces were modified with fluorine or oxygen by plasma treatment in an O 2 or C 3 F 8 gas environment in order to induce wettability. The oxygenated-NCD (O-NCD) film surface was hydrophilic and the fluorinated-NCD (F-NCD) surface was hydrophobic. The efficiency of early cell adhesion, which is dependent on the wettability of the cell culture plate and necessary for the growth and proliferation of cells, was 89.62 ± 3.92% on the O-NCD film and 7.78 ± 0.77% on the F-NCD film surface after 3 h of cell culture. The wettability of the NCD film surface was artificially modified using a metal mask and plasma treatment to fabricate a micro-pattern. Four types of micro-patterns were fabricated (line, circle, mesh, and word) on the NCD film surface. We precisely arrayed the neuroblastoma cells on the micro-patterned NCD film surfaces by controlling the surface wettability and cell seeding density. The neuroblastoma cells adhered and proliferated along the O-NCD film surface.
- Published
- 2016
- Full Text
- View/download PDF
84. Micro cell array on silicon substrate using graphene sheet
- Author
-
Dae-Hoon Kim, Young-Sang Park, Seungmin Cho, Ki Moo Lim, Hyung Jin Kim, Woo-Hwan Park, Kwang Soup Song, Hyeong-Guk Son, Da-Som Lee, and Hong-Gi Oh
- Subjects
Materials science ,Silicon ,Passivation ,Graphene ,Mechanical Engineering ,Graphene foam ,technology, industry, and agriculture ,chemistry.chemical_element ,Nanotechnology ,02 engineering and technology ,Substrate (electronics) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,law.invention ,chemistry ,Mechanics of Materials ,law ,General Materials Science ,0210 nano-technology ,Layer (electronics) ,Graphene nanoribbons ,Graphene oxide paper - Abstract
To fabricate micro-patterns for bioengineering applications, we used graphene sheet, metal mask, and plasma treatment rather than the commonly used photolithography process. Two types of micro-patterns were fabricated (line, and circle) on SiO 2 /Si (100, p-typed) substrate. In the line and circle micro-patterns, graphene etched areas were 100 and 150 μm, respectively, with fluorinated graphene spacing. The efficiencies of early cell adhesion, which is necessary for the growth and proliferation of cells, were 62, 17, and 65% on the pristine, fluorinated, and etched graphene surface, respectively, for 6 h of cell culture. After seeding the neuron cells on the patterned substrate, neuron cells proliferated and differentiated along the graphene etched regions. The graphene sheet was used as a passivation layer for micro-array of the neuron cell on SiO 2 /Si.
- Published
- 2017
- Full Text
- View/download PDF
85. V241F KCNQ1 Mutation Shortens Electrical Wavelength and Reduces Ventricular Pumping Capabilities: A Simulation Study With an Electro-Mechanical Model
- Author
-
Fakhmi Adi Rasyidin, Ki Moo Lim, and Aulia Khamas Heikhmakhtiar
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Heartbeat ,Materials Science (miscellaneous) ,Biophysics ,General Physics and Astronomy ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Repolarization ,Sinus rhythm ,Physical and Theoretical Chemistry ,Mathematical Physics ,electromechanical model ,V241F KCNQ1 mutation ,sinus rhythm ,Ejection fraction ,Chemistry ,Stroke volume ,ventricular fibrillation ,medicine.disease ,lcsh:QC1-999 ,computational model ,Electrophysiology ,030104 developmental biology ,Ventricular fibrillation ,Mutation (genetic algorithm) ,Cardiology ,lcsh:Physics - Abstract
Death due to ventricular fibrillation (VF) can occur over a relatively short time period. During the first stage, an irregular heartbeat or arrhythmia of the heart may occur. Therefore, studying arrhythmia could reveal important insights relevant to the prevention of VF. One of the factors known to cause arrhythmia is the generation of mutations in the ion channels of myocytes. The current experimental methods to monitor and observe subjects with arrhythmia are invasive, and could possibly harm the subject with no guarantee of obtaining good results. These limitations could be overcome by using an extensively validated computational simulation study. This study aims to enhance our understanding of the effect of the V241F mutation on electromechanical behavior in the heart. We simulated three conditions; wild-type (WT), heterozygous/intermediate V241F, and pure V241F conditions in an electrophysiological single cell model and three-dimensional electro-mechanics ventricular model. The electro-mechanics model is a one-way coupling of the electrical compartment to the mechanical compartment by Ca2+ transient concentration. Consistent with a previous study, the V241F mutation significantly shortened the action potential duration at 90% repolarization (APD90) under pure V241F mutation conditions, due to the gain of function of the slow delayed rectifier potassium (IKs) channel. This APD90 shortening is associated with a short electrical wavelength, which shortens the Ca2+ activation time as well. The hemodynamic responses showed that the V241F mutation lowered ventricular contraction under normal sinus rhythm conditions by decreasing the stroke volume, stroke work, and ejection fraction. During reentry, the V241F mutation significantly reduced the ventricular contractility compared with the WT condition. In conclusions, the effect of the two variants of V241F (intermediate and pure) mutation not only disturbed the electrophysiological events but also affected the mechanical behavior significantly. The result of this study can be used as a reference for the cardiovascular expert to decide the appropriate pharmacology of IKs conductance block for the patient.
- Published
- 2018
- Full Text
- View/download PDF
86. Computational prediction of the effect of D172N KCNJ2 mutation on ventricular pumping during sinus rhythm and reentry
- Author
-
Aulia Khamas Heikhmakhtiar, Chung-Hao Lee, Ki Moo Lim, and Kwang Soup Song
- Subjects
medicine.medical_specialty ,Cardiac output ,Materials science ,Heart Ventricles ,0206 medical engineering ,Biomedical Engineering ,02 engineering and technology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Ventricular Function ,Sinus rhythm ,Potassium Channels, Inwardly Rectifying ,Ejection fraction ,Models, Cardiovascular ,Cardiac arrhythmia ,Arrhythmias, Cardiac ,Stroke volume ,Reentry ,020601 biomedical engineering ,Computer Science Applications ,Electrophysiology ,medicine.anatomical_structure ,Ventricle ,Mutation ,Cardiology - Abstract
The understanding of cardiac arrhythmia under genetic mutations has grown in interest among researchers. Previous studies focused on the effect of the D172N mutation on electrophysiological behavior. In this study, we analyzed not only the electrophysiological activity but also the mechanical responses during normal sinus rhythm and reentry conditions by using computational modeling. We simulated four different ventricular conditions including normal case of ten Tusscher model 2006 (TTM), wild-type (WT), heterozygous (WT/D172N), and homozygous D172N mutation. The 2D simulation result (in wire-shaped mesh) showed the WT/D172N and D172N mutation shortened the action potential duration by 14%, and by 23%, respectively. The 3D electrophysiological simulation results showed that the electrical wavelength between TTM and WT conditions were identical. Under sinus rhythm condition, the WT/D172N and D172N reduced the pumping efficacy with a lower left ventricle (LV) and aortic pressures, stroke volume, ejection fraction, and cardiac output. Under the reentry conditions, the WT condition has a small probability of reentry. However, in the event of reentry, WT has shown the most severe condition. Furthermore, we found that the position of the rotor or the scroll wave substantially influenced the ventricular pumping efficacy during arrhythmia. If the rotor stays in the LV, it will cause very poor pumping performance. Graphical Abstract A model of a ventricular electromechanical system. This whole model was established to observe the effect of D172N KCNJ2 mutation on ventricular pumping behavior during sinus rhythm and reentry conditions. The model consists of two components; electrical component and mechanical component. The electrophysiological model based on ten Tusscher et al. with the IK1 D172N KCNJ2 mutation, and the myofilament dynamic (cross-bridge) model based on Rice et al. study. The 3D electrical component is a ventricular geometry based on MRI which composed of nodes representing single-cell with electrophysiological activation. The 3D ventricular mechanic is a finite element mesh composed of single-cells myofilament dynamic model. Both components were coupled with Ca2+ concentration. We used Gaussian points for the calcium interpolation from the electrical mesh to the mechanical mesh.
- Published
- 2018
87. Effect of KCNQ1 G229D mutation on cardiac pumping efficacy and reentrant dynamics in ventricles: Computational study
- Author
-
Aroli Marcellinus, Seong Wook Choi, Ki Moo Lim, Natalia A. Trayanova, Han-Jeong Hwang, Ana Rahma Yuniarti, and Febrian Setianto
- Subjects
medicine.medical_specialty ,Cardiac output ,Heart Ventricles ,0206 medical engineering ,Biomedical Engineering ,Mutation, Missense ,02 engineering and technology ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Atrial Fibrillation ,medicine ,Humans ,Sinus rhythm ,Computer Simulation ,cardiovascular diseases ,Molecular Biology ,Ejection fraction ,business.industry ,Applied Mathematics ,Models, Cardiovascular ,Atrial fibrillation ,Stroke volume ,medicine.disease ,020601 biomedical engineering ,medicine.anatomical_structure ,Computational Theory and Mathematics ,Amino Acid Substitution ,Ventricle ,Modeling and Simulation ,Mutation (genetic algorithm) ,Ventricular fibrillation ,KCNQ1 Potassium Channel ,Cardiology ,cardiovascular system ,business ,Software - Abstract
There is growing interest in genetic arrhythmia since mutations in gene which encodes the ion channel underlie numerous arrhythmias. Hasegawa et al reported that G229D mutation in KCNQ1 underlies atrial fibrillation due to significant shortening of action potential duration (APD) in atrial cells. Here, we predicted whether KCNQ1 G229D mutation affects ventricular fibrillation generation, although it shortens APD slightly compared with the atrial cell. We analyzed the effects of G229D mutation on electrical and mechanical ventricle behaviors (not considered in previous studies). We compared action potential shapes under wild-type and mutant conditions. Electrical wave propagations through ventricles were analyzed during sinus rhythm and reentrant conditions. I(Ks) enhancement due to G229D mutation shortened the APD in the ventricular cells (6%, 0.3%, and 8% for endo, M, and epi-cells, respectively). The shortened APD contributed to 7% shortening of QT intervals, 29% shortening of wavelengths, 20% decrease in intraventricular pressure, and increase in end-systolic volume 17%, end-diastolic volume 7%, and end-diastolic pressure 11%, which further resulted in reduction in stroke volume as well as cardiac output (28%), ejection fraction 33% stroke work 44%, and ATP consumption 28%. In short, using computational model of the ventricle, we predicted that G229D mutation decreased cardiac pumping efficacy and increased the vulnerability of ventricular fibrillation.
- Published
- 2018
88. Windkessel model of hemodynamic state supported by a pulsatile ventricular assist device in premature ventricle contraction
- Author
-
Seong Wook Choi, Ki Moo Lim, Joon Yeong Kim, and Keun Her
- Subjects
Male ,Windkessel model ,medicine.medical_treatment ,Pulsatile flow ,Hemodynamics ,Blood Pressure ,02 engineering and technology ,030204 cardiovascular system & hematology ,Electrocardiography ,0302 clinical medicine ,Heart Rate ,Tachycardia ,Medicine ,Radiological and Ultrasound Technology ,Cardiac cycle ,Models, Cardiovascular ,General Medicine ,Middle Aged ,Ventricular Premature Complexes ,lcsh:R855-855.5 ,Pulsatile Flow ,cardiovascular system ,Aortic pressure ,Cardiology ,Female ,medicine.symptom ,Arrhythmia ,Algorithms ,Adult ,medicine.medical_specialty ,lcsh:Medical technology ,Sinus tachycardia ,Heart Ventricles ,0206 medical engineering ,Biomedical Engineering ,Phase-locked loop ,Biomaterials ,Counter-pulsation control ,Young Adult ,03 medical and health sciences ,Internal medicine ,Pulsatile ventricular assist device ,Heart rate ,Humans ,Computer Simulation ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Aged ,Heart Failure ,business.industry ,Research ,Arrhythmias, Cardiac ,medicine.disease ,Myocardial Contraction ,020601 biomedical engineering ,Ventricular assist device ,Heart failure ,Heart-Assist Devices ,business - Abstract
Background Counter-pulsation control (CPC) by ventricular assist devices (VADs) is believed to reduce cardiac load and increase coronary perfusion. However, patients with VADs have a higher risk of arrhythmia, which may cause the CPC to fail. Consequently, CPC has not been applied by VADs in clinical practice. The phase-locked loop (PLL) algorithm for CPC is readily implemented in VADs; however, it requires a normal, consistent heartbeat for adequate performance. When an arrhythmia occurs, the algorithm maintains a constant pumping rate despite the unstable heartbeat. Therefore, to apply the PLL algorithm to CPC, the hemodynamic effects of abnormal heartbeats must be analyzed. Objectives This study sought to predict the hemodynamic effects in patients undergoing CPC using VADs, based on electrocardiogram (ECG) data, including a wide range of heart rate (HR) changes caused by premature ventricular contraction (PVC) or other reasons. Methods A four-element Windkessel hemodynamic model was used to reproduce the patient’s aortic blood pressure in this study. ECG data from 15 patients with severe congestive heart failure were used to assess the effect of the CPC on the patients’ hemodynamic state. The input and output flow characteristics of the pulsatile VAD (LibraHeart I, Cervika, Korea) were measured using an ultrasound blood flow meter (TS410, Transonic, USA), with the aortic pressure maintained at 80–120 mmHg. All other patient conditions were also reproduced. Results In patients with PVCs or normal heartbeats, CPC controlled by a VAD reduced the cardiac load by 20 and 40%, respectively. When the HR was greater for other reasons, such as sinus tachycardia, simultaneous ejection from the heart and VAD was observed; however, the cardiac load was not increased by rapid cardiac contractions resulting from decreased left ventricle volume. These data suggest that the PLL algorithm reduces the cardiac load and maintains consistent hemodynamic changes.
- Published
- 2018
- Full Text
- View/download PDF
89. Estimation of Cardiac Pumping Performance according to the Ventricular Electrical Activation Time Distribution by Using Physiome Model
- Author
-
Hyeong-Gyun Kim and Ki Moo Lim
- Subjects
Stroke work ,medicine.medical_specialty ,Physiome ,business.industry ,Internal medicine ,Cardiology ,medicine ,Time distribution ,Stroke volume ,business ,Biomedical engineering - Abstract
The purpose of the study is to examine the effects of pacemaker location on cardiac pumping efficacy the-oretically. We used a three-dimensional finite element cardiac electromechanical model of canine ventricles with mod-els of the circulatory system. Electrical activation time for normal sinus rhythm and artificial pacing in apex, leftventricular free wall, and right ventricular free wall were obtained from electrophysiological model. We applied theelectrical activation time maps to the mechanical contraction model and obtained cardiac mechanical responses suchas myocardial contractile ATP consumption, stroke work, stroke volume, ejection fraction, and etc. Among three arti-ficial pacing methods, left ventricle pacing showed best performance in ventricular pumping efficacy.Key words: Cardiac electromechanical model, Electrical activation time, ATP consumption rate, Stroke work, Strokevolume I. 서 론 정상동성리듬(Normal sinus rhythm)에 의한 심실의 수축은 퍼킨제섬유의 빠른 전도에 의해 심내막에 균일하고 동시자극을 주게 되고 이 자극이 심내막에서 심외막으로 전달됨으로써, 거의 동시다발적으로 좌우심실의 수축이 일어나게 된다. 심실의 전기적 흥분이 전파되는 경로상에서 문제가 있거나 동시성이 깨어질 경우에 인공 심박조율기를 이식하여 인공적으로 심조율을 하게 된다. 일반적으로 인공 심장재동기화를시행할때, 심실전극도자는접근성의용이로일반적으로 우심실에 이식한다[1]. 그러나 의료장비 및 시술기술의 발전으로 우심실뿐 만 아니라 좌심실이나 심첨 등에도 이식을 할 수 있게 되었고, 우심실이 아닌 다른 부위에서 인공 심조율기를 이식하여 시행함으로써 어떠한 심장역학적 변화가 있는지를 알아보고자 하는 실험들이 시도되었다[2,3]. 최근 일부 연구에서 보면 우심실이 아닌 좌심실에서 인위적으로 조율을 하였을 때 심박출량의 개선을 보인다는 보고도 있었다[4]. 그러나 실험적 방법에 의한 결과들은대부분 심장기능을 가늠하는 직접적인 지표(심박출량, 압력-부피관계, 심장에 부여되는 기계적응력 및 에너지소모량 등)가 아니라 심전도 또는 혈관계의 혈압과 같은 간접적인 지표들이다. 현재 의료측정장비의 기술로는 아직까지 위와 같은 지표들을 측정하는 것은 불가능하다. 이의 대안으로 심장모델링 기술을 이용한 컴퓨터 시뮬레
- Published
- 2015
- Full Text
- View/download PDF
90. Simulation Study of Blood Perfusion according to Outflow Cannulation Site of Left Ventricular Assist Device
- Author
-
Hyeong Gyun Kim, Ki Moo Lim, and In Hyeog Jee
- Subjects
Aortic arch ,medicine.medical_specialty ,business.industry ,Blood flow ,Blood pressure ,Right Common Carotid Artery ,Internal medicine ,medicine.artery ,Descending aorta ,Ascending aorta ,cardiovascular system ,medicine ,Cardiology ,Common carotid artery ,business ,Perfusion - Abstract
Outflow cannulation site of left ventricular assist device(LVAD) chosen by considering anatomical structure of thoracic cavity and vascular system. Though outflow cannulation site influences blood perfusion at each branch, there is no standard rule or quantitative data. In this study, we computed the amount of blood perfusion at each arterial branch numerically according to outflow cannulation sites(ascending aorta, aortic arch, descending aorta). We generated computational meshes to the three-dimensionally reconstructed arterial system. Clinically measured arterial pressure were used for inlet boundary condition, porous media were applied to mimic blood flow resistance. Blood perfusion through left common carotid artery was 2.5 times higher than other cases, and that through right common carotid artery was 1.1 times higher than other branches. Although this is simulation study, will be useful reference data for the clinical study of LVAD which considers blood perfusion efficiency.
- Published
- 2015
- Full Text
- View/download PDF
91. Computational analysis of the effect of valvular regurgitation on ventricular mechanics using a 3D electromechanics model
- Author
-
Eun Bo Shim, Seung-Bae Hong, Byong Kwon Lee, Ki Moo Lim, and Natalia A. Trayanova
- Subjects
medicine.medical_specialty ,Physiology ,Heart Ventricles ,Aortic Valve Insufficiency ,Regurgitation (circulation) ,Models, Biological ,Article ,Ventricular Function, Left ,Stroke work ,Dogs ,Internal medicine ,Animals ,Medicine ,cardiovascular diseases ,Electromechanics ,Ventricular mechanics ,Heart Failure ,Mitral regurgitation ,business.industry ,Mitral Valve Insufficiency ,Stroke Volume ,Stroke volume ,medicine.disease ,Anesthesia ,Heart failure ,Ventricular pressure ,Cardiology ,business - Abstract
Using a three-dimensional electromechanical model of the canine ventricles with dyssynchronous heart failure, we investigated the relationship between severity of valve regurgitation and ventricular mechanical responses. The results demonstrated that end-systolic tension in the septum and left ventricular free wall was significantly lower under the condition of mitral regurgitation (MR) than under aortic regurgitation (AR). Stroke work in AR was higher than that in MR. On the other hand, the difference in stroke volume between the two conditions was not significant, indicating that AR may cause worse pumping efficiency than MR in terms of consumed energy and performed work.
- Published
- 2015
- Full Text
- View/download PDF
92. The effect of heart failure and left ventricular assist device treatment on right ventricular mechanics: a computational study
- Author
-
Ki Moo Lim, Jun I. K. Park, Seong Wook Choi, Chang Hyun Kim, Aulia Khamas Heikhmakhtiar, Yoo Seok Kim, and Kwang Soup Song
- Subjects
Cardiac output ,medicine.medical_specialty ,lcsh:Medical technology ,medicine.medical_treatment ,0206 medical engineering ,Finite Element Analysis ,Biomedical Engineering ,Hemodynamics ,Left ventricular assist device ,02 engineering and technology ,030204 cardiovascular system & hematology ,Biomaterials ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine.artery ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Computer Simulation ,Mechanical Phenomena ,Heart Failure ,Radiological and Ultrasound Technology ,business.industry ,Research ,General Medicine ,medicine.disease ,equipment and supplies ,020601 biomedical engineering ,Biomechanical Phenomena ,medicine.anatomical_structure ,lcsh:R855-855.5 ,Electromechanical model ,Ventricle ,Heart failure ,Ventricular assist device ,Circulatory system ,Pulmonary artery ,Cardiology ,Ventricular pressure ,Ventricular Function, Right ,Right ventricle ,Heart-Assist Devices ,business - Abstract
Background and aims Although it is important to analyze the hemodynamic factors related to the right ventricle (RV) after left ventricular assist device (LVAD) implantation, previous studies have focused only on the alteration of the ventricular shape and lack quantitative analysis of the various hemodynamic parameters. Therefore, we quantitatively analyzed various hemodynamic parameters related to the RV under normal, heart failure (HF), and HF incorporated with continuous flow LVAD therapy by using a computational model. Methods In this study, we combined a three-dimensional finite element electromechanical model of ventricles, which is based on human ventricular morphology captured by magnetic resonance imaging (MRI) with a lumped model of the circulatory system and continuous flow LVAD function in order to construct an integrated model of an LVAD implanted-cardiovascular system. To induce systolic dysfunction, the magnitude of the calcium transient function under HF condition was reduced to 70% of the normal value, and the time constant was reduced by 30% of the normal value. Results Under the HF condition, the left ventricular end systolic pressure decreased, the left ventricular end diastolic pressure increased, and the pressure in the right atrium (RA), RV, and pulmonary artery (PA) increased compared with the normal condition. The LVAD therapy decreased the end-systolic pressure of the LV by 41%, RA by 29%, RV by 53%, and PA by 71%, but increased the right ventricular ejection fraction by 52% and cardiac output by 40%, while the stroke work was reduced by 67% compared with the HF condition without LVAD. The end-systolic ventricular tension and strain decreased with the LVAD treatment. Conclusion LVAD enhances CO and mechanical unloading of the LV as well as those of the RV and prevents pulmonary hypertension which can be induced by HF.
- Published
- 2017
93. The effect of myocardial action potential duration on cardiac pumping efficacy: a computational study
- Author
-
Da Un Jeong and Ki Moo Lim
- Subjects
medicine.medical_specialty ,Myofilament ,lcsh:Medical technology ,Contraction (grammar) ,Time Factors ,0206 medical engineering ,Biomedical Engineering ,Action Potentials ,02 engineering and technology ,Action potential duration ,030204 cardiovascular system & hematology ,Biomaterials ,03 medical and health sciences ,0302 clinical medicine ,CrossBridge ,Internal medicine ,medicine ,Myocyte ,Ventricular Function ,Radiology, Nuclear Medicine and imaging ,Computer Simulation ,Conductivity ,Radiological and Ultrasound Technology ,Cardiac cycle ,Chemistry ,Myocardium ,Research ,Myocardial action potential ,Electric Conductivity ,Models, Cardiovascular ,Cardiac action potential ,General Medicine ,IKs channel ,medicine.disease ,020601 biomedical engineering ,Biomechanical Phenomena ,Electrophysiology ,lcsh:R855-855.5 ,Ventricular fibrillation ,Cardiology ,cardiovascular system ,Computational simulation ,Single-Cell Analysis ,Cardiac pumping ,Arrhythmia - Abstract
Background and aims Although studies on the relation between arrhythmias and the action potential duration (APD) have been carried out, most of them are based only on electrophysiological factors of the heart and lack experiments that consider cardiac mechanical and electromechanical characteristics. Therefore, we conducted this study to clarify the relevance of the shortening of APD of a cell in relation to the mechanical contraction activity of the heart and the associated risk of arrhythmia. Methods The human ventricular model used in this study has two dynamic characteristics: electrophysiological conduction and mechanical contraction. The model simulating electrophysiological characteristics was consisted of lumped parameter circuit that can mimic the phenomenon of ion exchange through the cell membrane of myocyte and consisted of 214,319 tetrahedral finite elements. In contrast, the model simulating mechanical contraction characteristics was constructed to mimic cardiac contraction by means of the crossbridge of a myofilament and consisted of 14,720 hermite-based finite elements to represent a natural 3D curve of the cardiac surface. First, we performed a single cell simulation and the electrophysiological simulation according to the change of the APD by changing the electrical conductivity of the I Ks channel. Thus, we confirmed the correlation between APD and intracellular Ca2+ concentration. Then, we compared mechanical response through mechanical simulation using Ca2+ data from electrical simulation. Results The APD and the sum of the intracellular Ca2+ concentrations showed a positive correlation. The shortened APD reduced the conduction wavelength of ventricular cells by shortening the plateau and early repolarization in myocardial cells. The decrease in APD reduced ventricular pumping efficiency by more than 60% as compared with the normal group (normal conditions). This change is caused by the decline of ventricular output owing to reduced ATP consumption during the crossbridge of myofilaments and decreased tension. Conclusion The shortening of APD owing to increased electrical conductivity of a protein channel on myocardial cells likely decreases the wavelength and the pumping efficiency of the ventricles. Additionally, it may increase tissue sensitivity to ventricular fibrillation, including reentry, and cause symptoms such as dyspnea and dizziness.
- Published
- 2017
94. Computational prediction of proarrhythmogenic effect of the V241F KCNQ1 mutation in human atrium
- Author
-
Eun Bo Shim, Jae Boum Youm, Hyun Lee, Riski Imaniastuti, Ki Moo Lim, and Nari Kim
- Subjects
medicine.medical_specialty ,endocrine system diseases ,Biophysics ,Biology ,Polymorphism, Single Nucleotide ,Pathogenesis ,Heart Conduction System ,Electrical conduction ,Internal medicine ,Atrial Fibrillation ,medicine ,Humans ,Computer Simulation ,Genetic Predisposition to Disease ,Heart Atria ,Atrium (heart) ,Molecular Biology ,Models, Genetic ,urogenital system ,Models, Cardiovascular ,Wild type ,medicine.disease ,Electrophysiology ,medicine.anatomical_structure ,Spiral wave ,KCNQ1 Potassium Channel ,Mutation ,Mutation (genetic algorithm) ,cardiovascular system ,Cardiology ,Atrial flutter - Abstract
Genetic factors play an important role in the pathogenesis of atrial flutter (AF). Although mutation in KCNQ1 has been widely correlated with AF, the mechanism by which mutation promotes AF remains poorly understood. The purpose of this study was to investigate the proarrhythmic effect of V241F KCNQ1 mutation in human atrium using the electrophysiological model of human atrium. Using 2D and 3D cardiac electrophysiological models that incorporate the Courtemanche human atrial model, we simulated electrical conduction through atrial tissue and compared spiral wave dynamics under the wild-type and V241F KCNQ1 conditions. In 2D and 3D simulation, V241F KCNQ1 showed a stable and persistent wave without spiral break-up, whereas the wild-type wave was less stable, resulting in early self-termination. According to the results, we concluded that compared to the wild type, the electrical activity of the V241F KCNQ1 mutation is more likely to sustain spiral wave.
- Published
- 2014
- Full Text
- View/download PDF
95. Application of Cardiac Electromechanical FE Model for Predicting Pumping Efficacy of LVAD According to Heart Failure Severity
- Author
-
Ki Moo Lim and Dae Hyun Jung
- Subjects
medicine.medical_specialty ,business.industry ,Mechanical Engineering ,Internal medicine ,Heart failure ,medicine ,Cardiology ,Fe model ,medicine.disease ,business - Abstract
따라서 LVAD 처방의 장단점을 고려하여, 적절한 시기에 치료를 시작하는 것이 매우 중요하다. 특히 심실회복을 목표로 LVAD 치료를 시작하는 환Key Words: Left Ventricular Assist Device(좌심실보조장치), Ventricular Unloading(심실부하감소), Finite Element Model(유한요소감소모델), ATP Consumption(수축성 ATP소모율) 초록: 좌심실보조장치(LVAD)가 심실부하감소에 미치는 영향을 극대화 하기 위해, 심실보조장치 치료를 위한 최적의 심부전 심각도 단계를 찾는 것은 중요하다. 우리는 심부전 정도에 따른 LVAD 의 박동효율을 이론적으로 예측하였다. 우리는 혈관시스템의 6컴파트먼트의 Wind-kessel 모델과 연동된 심실의 삼차원 유한요소모델을 사용하였다. 이 모델을 이용하여, LVAD 치료 하에서 심부전의 정도에 따라 심실의 수축성 ATP 소모율, 좌심실압력, 심박출량, 심박출 분획, 1회심박출량 등과 같은 심장응답을 예측하였다. LVAD 치료 중에 에너지학적 부하조건을 암시하는 수축성 ATP 소모율은 5 단계 심부전 조건에서 가장 크게 감소하였다. 따라서, 우리는 LVAD 를 회복으로의 가교로서 고려하고 있을 때, 심부전 5 단계에서 LVAD 치료를 시작하는 것이 가장 적절하다는 결론을 내린다. Abstract: In order to maximize the effect of left ventricular assist device (LVAD) on ventricular unloading, the therapy should be begun at appropriate level of heart failure severity. We predicted pumping efficacy of LVAD according to the severity of heart failure theoretically. We used 3 dimensional finite element model of ventricle coupled with 6 Wind-kessel compartmental model of vascular system. Using the computational model, we predicted cardiac responses such as contractile ATP consumption of ventricle, left ventricular pressure, cardiac output, ejection fraction, and stroke work according to the severity of ventricular systolic dysfunction under the treatments of continuous LVAD. Contractile ATP consumption, which indicates the ventricular energetic loading condition decreased maximally at the 5
- Published
- 2014
- Full Text
- View/download PDF
96. A Pilot Study on Linking Tissue Mechanics with Load-Dependent Collagen Microstructures in Porcine Tricuspid Valve Leaflets.
- Author
-
Hudson, Luke T., Jett, Samuel V., Kramer, Katherine E., Laurence, Devin W., Ross, Colton J., Towner, Rheal A., Baumwart, Ryan, Ki Moo Lim, Mir, Arshid, Burkhart, Harold M., Yi Wu, and Chung-Hao Lee
- Subjects
TISSUE mechanics ,COLLAGEN ,PAMPHLETS ,HEART valves ,MULTISCALE modeling ,PAPILLARY muscles ,TRICUSPID valve - Abstract
The tricuspid valve (TV) is composed of three leaflets that coapt during systole to prevent deoxygenated blood from re-entering the right atrium. The connection between the TV leaflets' microstructure and the tissue-level mechanical responses has yet to be fully understood in the TV biomechanics society. This pilot study sought to examine the load-dependent collagen fiber architecture of the three TVleaflets, by employing amultiscale, combined experimental approach that utilizes tissue-level biaxial mechanical characterizations, micro-level collagen fiber quantification, and histological analysis. Our results showed that the three TV leaflets displayed greater extensibility in the tissues' radial direction than in the circumferential direction, consistently under different applied biaxial tensions. Additionally, collagen fibers reoriented towards the direction of the larger applied load, with the largest changes in the alignment of the collagen fibers under radially-dominant loading. Moreover, collagen fibers in the belly region of the TV leaflets were found to experience greater reorientations compared to the tissue region closer to the TV annulus. Furthermore, histological examinations of the TV leaflets displayed significant regional variation in constituent mass fraction, highlighting the heterogeneous collagen microstructure. The combined experimental approach presented in this work enables the connection of tissue mechanics, collagen fiber microstructure, and morphology for the TV leaflets. This experimental methodology also provides a new research platform for future developments, such as multiscale models for the TVs, and the design of bioprosthetic heart valves that could better mimic the mechanical, microstructural, and morphological characteristics of the native tricuspid valve leaflets. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
97. Computational prediction of the effects of the intra-aortic balloon pump on heart failure with valvular regurgitation using a 3D cardiac electromechanical model
- Author
-
Chang Hyun Kim, Ki Moo Lim, Natalia A. Trayanova, and Kwang-Soup Song
- Subjects
medicine.medical_specialty ,medicine.medical_treatment ,0206 medical engineering ,Finite Element Analysis ,Biomedical Engineering ,Diastole ,Blood Pressure ,Aortic regurgitation ,02 engineering and technology ,Regurgitation (circulation) ,030204 cardiovascular system & hematology ,Ventricular workload ,Membrane Potentials ,03 medical and health sciences ,0302 clinical medicine ,Adenosine Triphosphate ,Imaging, Three-Dimensional ,Internal medicine ,medicine ,Humans ,Computer Simulation ,Intra-aortic balloon pump ,Mitral regurgitation ,Heart Failure ,Intra-Aortic Balloon Pumping ,business.industry ,Models, Cardiovascular ,Mitral Valve Insufficiency ,Stroke volume ,medicine.disease ,020601 biomedical engineering ,Myocardial Contraction ,Computer Science Applications ,medicine.anatomical_structure ,Blood pressure ,Ventricle ,Anesthesia ,Heart failure ,3D electromechanical model ,Cardiology ,cardiovascular system ,Original Article ,business - Abstract
Intra-aortic balloon pump (IABP) is normally contraindicated in significant aortic regurgitation (AR). It causes and aggravates pre-existing AR while performing well in the event of mitral regurgitation (MR). Indirect parameters, such as the mean systolic pressure, product of heart rate and peak systolic pressure, and pressure-volume are used to quantify the effect of IABP on ventricular workload. However, to date, no studies have directly quantified the reduction in workload with IABP. The goal of this study is to examine the effect of IABP therapy on ventricular mechanics under valvular insufficiency by using a computational model of the heart. For this purpose, the 3D electromechanical model of the failing ventricles used in previous studies was coupled with a lumped parameter model of valvular regurgitation and the IABP-treated vascular system. The IABP therapy was disturbed in terms of reducing the myocardial tension generation and contractile ATP consumption by valvular regurgitation, particularly in the AR condition. The IABP worsened the problem of ventricular expansion induced as a result of the regurgitated blood volume during the diastole under the AR condition. The IABP reduced the LV stroke work in the AR, MR, and no regurgitation conditions. Therefore, the IABP helped the ventricle to pump blood and reduced the ventricular workload. In conclusion, the IABP partially performed its role in the MR condition. However, it was disturbed by the AR and worsened the cardiovascular responses that followed the AR. Therefore, this study computationally proved the reason for the clinical contraindication of IABP in AR patients.
- Published
- 2016
98. Detection of Alpha-Fetoprotein in Hepatocellular Carcinoma Patient Plasma with Graphene Field-Effect Transistor
- Author
-
Hyungjin Kim, Dong Cheol Jeon, Kwang Soup Song, Byoung Kuk Jang, Hong Gi Oh, Ki Moo Lim, Woo Hwan Park, and Dae Hoon Kim
- Subjects
Carcinoma, Hepatocellular ,Transistors, Electronic ,Dirac point ,02 engineering and technology ,biosensor ,lcsh:Chemical technology ,01 natural sciences ,Biochemistry ,Article ,Analytical Chemistry ,alpha-fetoprotein ,Biomarkers, Tumor ,medicine ,Humans ,lcsh:TP1-1185 ,Electrical and Electronic Engineering ,neoplasms ,Instrumentation ,Immunoassay ,biology ,Chemistry ,Liver Neoplasms ,graphene ,digestive, oral, and skin physiology ,010401 analytical chemistry ,Phosphate buffered saline ,field-effect transistor ,Electrochemical Techniques ,hepatocellular carcinoma ,Plasma ,021001 nanoscience & nanotechnology ,Graphene field effect transistors ,medicine.disease ,Molecular biology ,digestive system diseases ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Hepatocellular carcinoma ,embryonic structures ,biology.protein ,Graphite ,alpha-Fetoproteins ,Antibody ,0210 nano-technology ,Alpha-fetoprotein ,Biosensor - Abstract
The detection of alpha-fetoprotein (AFP) in plasma is important in the diagnosis of hepatocellular carcinoma (HCC) in humans. We developed a biosensor to detect AFP in HCC patient plasma and in a phosphate buffer saline (PBS) solution using a graphene field-effect transistor (G-FET). The G-FET was functionalized with 1-pyrenebutyric acid N-hydroxysuccinimide ester (PBASE) for immobilization of an anti-AFP antibody. AFP was detected by assessing the shift in the voltage of the Dirac point (&Delta, VDirac) after binding of AFP to the anti-AFP-immobilized G-FET channel surface. This anti-AFP-immobilized G-FET biosensor was able to detect AFP at a concentration of 0.1 ng mL&minus, 1 in PBS, and the detection sensitivity was 16.91 mV. In HCC patient plasma, the biosensor was able to detect AFP at a concentration of 12.9 ng mL&minus, 1, with a detection sensitivity of 5.68 mV. The sensitivity (&Delta, VDirac) depended on the concentration of AFP in either PBS or HCC patient plasma. These data suggest that G-FET biosensors could have practical applications in diagnostics.
- Published
- 2018
- Full Text
- View/download PDF
99. Numerical Simulation of the Effect of Sodium Profile on Cardiovascular Response to Hemodialysis
- Author
-
Eun Bo Shim, Ki Moo Lim, Byung Goo Min, and Sung Wook Choi
- Subjects
medicine.medical_specialty ,Baroreceptor ,medicine.medical_treatment ,Sodium ,chemistry.chemical_element ,Blood Pressure ,Contractility ,Renal Dialysis ,Internal medicine ,Heart rate ,sodium profile ,medicine ,Computer Simulation ,Dialysis ,Chemistry ,Models, Cardiovascular ,General Medicine ,Surgery ,Compliance (physiology) ,Blood pressure ,Hemodialysis ,numerical simulation ,Cardiology ,cardiovascular system ,Original Article - Abstract
Purpose: We developed a numerical model that predicts cardiovascular system response to hemodialysis, focusing on the effect of sodium profile during treatment. Materials and Methods: The model consists of a 2-compartment solute kinetics model, 3-compartment body fluid model, and 12-lumpedparameter representation of the cardiovascular circulation model connected to set-point models of the arterial baroreflexes. The solute kinetics model includes the dynamics of solutes in the intracellular and extracellular pools and a fluid balance model for the intracellular, interstitial, and plasma volumes. Perturbation due to hemodialysis treatment induces a pressure change in the blood vessels and the arterial baroreceptors then trigger control mechanisms (autoregulation system). These in turn alter heart rate, systemic arterial resistance, and cardiac contractility. The model parameters are based largely on the reported values. Results: We present the results obtained by numerical simulations of cardiovascular response during hemodialysis with 3 different dialysate sodium concentration profiles. In each case, dialysate sodium concentration profile was first calculated using an inverse algorithm according to plasma sodium concentration profiles, and then the percentage changes in each compartment pressure, heart rate, and systolic ventricular compliance and systemic arterial resistance during hemodialysis were determined. A plasma concentration with an upward convex curve profile produced a cardiovascular response more stable than linear or downward convex curves. Conclusion: By conducting numerical tests of dialysis/ cardivascular models for various treatment profiles and creating a database from the results, it should be possible to estimate an optimal sodium profile for each patient.
- Published
- 2008
100. Computational simulations of the effects of the G229D KCNQ1 mutation on human atrial fibrillation
- Author
-
Ki Moo Lim, Indana Zulfa, Eun Bo Shim, and Kwang-Soup Song
- Subjects
0301 basic medicine ,030103 biophysics ,medicine.medical_specialty ,Physiology ,Mutant ,3d model ,030204 cardiovascular system & hematology ,Gene mutation ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Atrial Fibrillation ,medicine ,Humans ,Computer Simulation ,Physics ,Models, Cardiovascular ,Atrial fibrillation ,Reentry ,medicine.disease ,Spiral wave ,Mutation (genetic algorithm) ,KCNQ1 Potassium Channel ,Mutation ,Cardiology ,Atrial cell - Abstract
Atrial fibrillation (AF) is related to mutations at the genetic level. This includes mutations in genes that encode KCNQ1, a subunit of the I Ks channel. Here, we investigate the mechanism of gain-of-function in I Ks towards the occurrence of AF. We used the Courtemanche–Ramirez–Nattel (CRN) human atrial cell model (Am J Physiol Heart Circ Physiol 275:H301–H321, 1998) and applied the modification proposed by Hasegawa et al. (Heart Rhythm 11:67–75, 2014) to fit the behavior of I Ks due to the G229D mutation in KCNQ1 under a heterozygous mutant form. This was incorporated into two-(2D) and three-dimensional (3D) tissue models, where the mutation sustained a reentrant wave. However, under the wild-type condition, the reentrant wave terminated before the end of our simulations (in 2D, the spiral wave terminated before 10 s, while in 3D, the spiral wave terminated before 13 s). Sustained reentry under the mutation conditions also resulted in a spiral wave breakup in the 3D model, which was sustained until the end of the simulation (20 s), indicating AF.
- Published
- 2015
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.