51. Next-generation Sequencing in Bone Marrow Failure Syndromes and Isolated Cytopenias: Experience of the Spanish Network on Bone Marrow Failure Syndromes
- Author
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Albert Català, Cristina Beléndez, Elena Vallespín, Carmen Sánchez-Valdepeñas, Elena Sebastián, Rosario Perona, Yari Giménez, Elena G Arias-Salgado, Luis Madero, Jordi Surrallés, Ana Galera, Susana Navarro, Julián Nevado, Leandro Sastre, Cristina Díaz de Heredia, Julián Sevilla, Eva M. Galvez, Roser Pujol, Juan A. Bueren, Isabel Badell, Paula Río, Massimo Bogliolo, Josune Zubicaray, Pablo Lapunzina, Montserrat Peiró, Institut Català de la Salut, [Gálvez E] Servicio de Hematología y Oncología Pediátrica, Fundación de Investigación Biomédica, Hospital Infantil Universitario Niño Jesús, Madrid, Spain. Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. [Vallespín E] Institute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, IDIPAZ, Madrid, Spain. Instituto de Investigaciones Biomédicas CSIC/UAM, IDIPaz, Madrid. [Arias-Salgado EG] Instituto de Investigaciones Biomédicas CSIC/UAM, IDIPaz, Madrid, Spain. [Sánchez-Valdepeñas C] Servicio de Hematología y Oncología Pediátrica, Fundación de Investigación Biomédica, Hospital Infantil Universitario Niño Jesús, Madrid, Spain. [Giménez Y, Navarro S] Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. Hematopoietic Innovative Therapies Division, Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas, Madrid, Spain. [Díaz de Heredia C] Grupo insuficiencias medulares de la SEHOP, Spain. Servei d’Oncologia i Hematologia Pediàtriques, Vall d’Hebron Hospital Universitari, Barcelona, Spain. Vall d’Hebron Institut de Recerca (VHIR), Barcelona, Spain, and Vall d'Hebron Barcelona Hospital Campus
- Subjects
Oncology ,medicine.medical_specialty ,Article ,DNA sequencing ,Medul·la òssia - Malalties ,Investigative Techniques::Genetic Techniques::Sequence Analysis::High-Throughput Nucleotide Sequencing [ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT] ,Internal medicine ,Medicine ,Gene ,Hemic and Lymphatic Diseases::Hematologic Diseases::Bone Marrow Diseases [DISEASES] ,Seqüència de nucleòtids ,enfermedades hematológicas y linfáticas::enfermedades hematológicas::enfermedades de la médula ósea [ENFERMEDADES] ,lcsh:RC633-647.5 ,business.industry ,Genetic heterogeneity ,Network on ,Bone marrow failure ,Cancer ,lcsh:Diseases of the blood and blood-forming organs ,Hematology ,medicine.disease ,Bone Marrow failure syndromes ,Cohort ,técnicas de investigación::técnicas genéticas::análisis de secuencias::secuenciación de nucleótidos de alto rendimiento [TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS] ,business - Abstract
© 2021 the Author(s)., Inherited bone marrow failure syndromes (IBMFSs) are a group of congenital rare diseases characterized by bone marrow failure, congenital anomalies, high genetic heterogeneity, and predisposition to cancer. Appropriate treatment and cancer surveillance ideally depend on the identification of the mutated gene. A next-generation sequencing (NGS) panel of genes could be 1 initial genetic screening test to be carried out in a comprehensive study of IBMFSs, allowing molecular detection in affected patients. We designed 2 NGS panels of IBMFS genes: version 1 included 129 genes and version 2 involved 145 genes. The cohort included a total of 204 patients with suspected IBMFSs without molecular diagnosis. Capture-based targeted sequencing covered > 99% of the target regions of 145 genes, with more than 20 independent reads. No differences were seen between the 2 versions of the panel. The NGS tool allowed a total of 91 patients to be diagnosed, with an overall molecular diagnostic rate of 44%. Among the 167 patients with classified IBMFSs, 81 patients (48%) were diagnosed. Unclassified IBMFSs involved a total of 37 patients, of whom 9 patients (24%) were diagnosed. The preexisting diagnosis of 6 clinically classified patients (6%) was amended, implying a change of therapy for some of them. Our NGS IBMFS gene panel assay is a useful tool in the molecular diagnosis of IBMFSs and a reasonable option as the first tier genetic test in these disorders.
- Published
- 2021