220 results on '"Etherington G"'
Search Results
52. Design and implementation of monitoring programmes for internal exposure (project OMINEX)
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Etherington, G., primary, N. Stradling, G., additional, Rahola, T., additional, LeGuen, B., additional, Hurtgen, C., additional, Jourdain, J.-R., additional, and B rard, P., additional
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- 2003
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53. Application of Monte Carlo calculations to calibration of anthropomorphic phantoms used for activity assessment of actinides in lungs
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Franck, D., primary, Borissov, N., additional, de Carlan, L., additional, Pierrat, N., additional, L. Genicot, J., additional, and Etherington, G., additional
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- 2003
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54. Optimising monitoring regimens for inhaled uranium oxides
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Stradling, N., primary, Hodgson, A., additional, Ansoborlo, E., additional, B rard, P., additional, Etherington, G., additional, Fell, T., additional, and LeGuen, B., additional
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- 2003
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55. Deposition and Clearance of Inhaled Particles in the Human Nasal Passage: Implications for Dose Assessment
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Etherington, G., primary, Smith, J.R.H., additional, Bailey, M.R., additional, Dorrian, M-D., additional, Shutt, A.L., additional, and Youngman, M.J., additional
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- 1998
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56. Workshop on Intakes of Radionuclides: Occupational and Public Exposure, Avignon, 15-18 September 1997
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Etherington, G, primary, Phipps, A W, additional, Harrison, J D, additional, Jones, D G, additional, and Stradling, G N, additional
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- 1998
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57. Aerosol deposition and clearance in the nasal passage - A comparison of experimental measurements and the ICRP (1994) Respiratory Tract Model for 3 μm particles.
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Smith, JRH, primary, Dorrian, M-D, additional, Youngman, MJ, additional, Bailey, MR, additional, Etherington, G, additional, and Shutt, AL, additional
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- 1997
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- View/download PDF
58. Deposition and clearance of inhaled particles in the human nasal passage
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Dorrian, M.-D., primary, Smith, J.R.H., additional, Youngman, M.J., additional, Bailey, M.R., additional, Etherington, G., additional, and Shutt, A.L., additional
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- 1996
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59. Evaluation of a High Purity Germanium Detector Body Monitor
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Smith, J.R.H., primary, Marsh, J.W., additional, Etherington, G., additional, Shutt, A.L., additional, and Youngman, M.J., additional
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- 1994
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60. Triage, monitoring and dose assessment for people exposed to ionising radiation following a malevolent act.
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Etherington, G., Rothkamm, K., Shutt, A. L., and Youngman, M. J.
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IONIZING radiation ,RADIATION doses ,RADIOLOGY ,RADIOACTIVE substances ,RADIATION exposure - Abstract
The part played by individual monitoring within the context of the overall response to incidents involving the malevolent use of radiation or radioactive material is discussed. The main objectives of an individual monitoring programme are outlined, and types of malevolent use scenario briefly described. Some major challenges facing those with responsibilities for planning the monitoring response to such an incident are identified and discussed. These include the need for rapid selection and prioritisation of people for individual monitoring by means of an effective triage system; the need for rapid initiation of individual monitoring; problems associated with monitoring large numbers of people; the particular difficulties associated with incidents involving pure-beta and alpha-emitting radionuclides; the need for techniques that can provide retrospective estimates of external radiation exposures rapidly and the need for rapid interpretation of contamination monitoring data. The paper concludes with a brief review of assistance networks and relevant international projects planned or currently underway. [ABSTRACT FROM PUBLISHER]
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- 2011
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61. An experimental study of clearance of inhaled particles from the human nose.
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Smith, J. R. H., Bailey, M. R., Etherington, G., Shutt, A. L., and Youngman, M. J.
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MUCOCILIARY system ,AIRWAY (Anatomy) ,INDIUM ,POLYSTYRENE ,VOLUNTEERS ,PARTICLES - Abstract
Retention in the extrathoracic airways, and clearance by nose blowing, of monodisperse indium-111--labeled polystyrene particles were followed for at least 2 days after inhalation by healthy volunteers. Nine volunteers inhaled 3-μμm aerodynamic diameter particles while sitting at rest, whereas subgroups of 3 or 4 inhaled 1.5-μμm or 6-μμm particles at rest, and 3-μμm or 6-μμm particles while performing light exercise. Retention of the initial extrathoracic deposit (IETD) in the extrathoracic airways was described by 4 components: on average 19%% IETD cleared by nose blowing; 15%% was swallowed before the first measurement, a few minutes after inhalation; 21%% cleared by mucociliary action between the first measurement and about an hour later; and 45%% subsequently cleared by mucociliary action. Geometric mean times in which 50%% and 90%% of IETD cleared were 2.5 and 22 hours. The geometric mean retention fractions at 24 and 48 hours were 7%% and 2.4%% IETD, respectively. No clear trends were found between parameters describing retention and any related to deposition (e.g., particle size). However, the fraction cleared by nose blowing was related to the frequency of nose blowing and therefore appears to be a characteristic of the individual. [ABSTRACT FROM AUTHOR]
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- 2011
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62. THE QUANTIFICATION OF UNCERTAINTIES IN INTERNAL DOSES ASSESSED FROM MONITORING MEASUREMENTS.
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Etherington, G.
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TRITIUM ,INDUSTRIAL contamination ,URINALYSIS ,BIOLOGICAL assay ,MONTE Carlo method ,UNCERTAINTY - Abstract
A novel method is described for the assessment of total uncertainties in intakes and internal doses assessed from in vivo and bioassay monitoring measurements. Using the information on uncertainties in intake patterns, measurements and biokinetic model parameters, the probability distribution functions for assessed intake and dose were generated using Monte-Carlo simulations. The method was implemented using software written in MS Visual Basic 6.0. Preliminary results are presented for the example of routine tritium-in-urine monitoring. It was shown that the uncertainty in the assessed dose first decreases with increasing monitoring interval, reaching a minimum at ~14 d, and then increases as the monitoring interval is increased beyond 14 d. The distribution describing the ratio of assessed-dose-to-true-dose becomes very asymmetric at longer monitoring intervals. In principle, this method should allow realistic uncertainties to be placed on assessed internal doses. [ABSTRACT FROM AUTHOR]
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- 2007
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63. Is there a role for surgery in the management of dropped head syndrome?
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Amin, A., Casey, A. T. H., and Etherington, G.
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PEOPLE with epilepsy ,PEOPLE with developmental disabilities ,CHRONICALLY ill ,THORACIC vertebrae ,OSTEOPOROSIS ,BONE diseases ,DROPPED head syndrome - Abstract
We present a 50-year-old chronic epileptic man with a long-standing head drop, who fell sustaining multilevel thoracic vertebral body fractures. The antiepileptic medication was thought to be responsible for his osteoporosis and dropped head. We review the aetiology of the dropped head and report on our experience of surgery for this rare and disabling condition. [ABSTRACT FROM AUTHOR]
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- 2004
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64. A Study of Aerosol Deposition and Clearance from the Human Nasal Passage.
- Author
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SMITH, J. R. H., ETHERINGTON, G., SHUTT, A. L., and YOUNGMAN, M. J.
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RESPIRATORY infections ,GASTROINTESTINAL system ,AERODYNAMICS ,SPECTROMETRY - Abstract
A study of the deposition and clearance of inhaled particles in the human nasal passage has identified and quantified the major routes of particle transport clearance from the nose. The results of the study have been used to construct a compartment model describing extrathoracic clearance. Experimental evidence for each of the model's clearance routes is discussed. [ABSTRACT FROM AUTHOR]
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- 2002
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65. Design of a Volunteer Study to Determine the Clearance of Inhaled Particles from the Human Nasal Passage.
- Author
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Smith, J. R. H., Dorrian, M-D., Youngman, M. I., Bailey, M. R., Etherington, G., and Shutt, A. L.
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RESPIRATORY infections ,AEROSOLS ,PUBLIC health - Abstract
The article presents a study that investigates the volunteer study of the National Radiological Protection Board (NRPB) to determine the health implications of inhaled particles on the nasal passage of human beings in Great Britain. It states the new model on respiratory tract imposed by the International Commission on Radiological Protection (ICRP). Moreover, the effects of aerosol on the respiratory tract of humans are also mentioned.
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- 1997
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66. Structure of the smectic D phase.
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Etherington, G., Leadbetter, A. J., Wang, X. J., Gray, G. W., and Tajbakhsh, A.
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- 1986
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67. Structure of the D phase. II.
- Author
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Etherington, G., Langley, A. J., Leadbetter, A. J., and Wang, X. J.
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- 1988
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68. A Study of the Human Biokinetics of Inhaled Gadolinium Oxide.
- Author
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SHUTT, A. L., YOUNGMAN, M. J., RAINE, C., STRADLING, G. N., ETHERINGTON, G., and KREYLING, W. G.
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RESPIRATORY infections ,LABORATORY animals ,GADOLINIUM ,POLYSTYRENE ,DETECTORS - Abstract
An experimental study of the absorption of inhaled gadolinium oxide from the human respiratory tract was conducted. Preliminary estimates of human respiratory tract model (HRTM) parameters describing the time dependence of absorption were derived and are compared with similar parameters determined from the results of experiments with laboratory animals. [ABSTRACT FROM AUTHOR]
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- 2002
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69. Mining whole genome resequencing data to identify functional mutations in boar taintcandidate genes
- Author
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Schiavo, G, Bovo, S, Cheloni, S, Ribani, A, Geraci, C, Gallo, M, Etherington, G, Di Palma, F, and Fontanesi, L
- Subjects
2. Zero hunger - Abstract
Next generation sequencing applied in pigs have recently produced re-sequenced pig genome data from different individuals belonging to a large variety of breeds. The availability of these large datasets is opening new opportunities to mine public nucleotide archives and identify mutations that could putatively affect economic relevant traits. Moreover, resequencing data from pooled pig DNA could provide cost-effective whole genome information from a large number of animals. In this study, we mined 110 individual pig genomes retrieved from the European Nucleotide Archive and from proprietary datasets generated from pigs of 28 different breeds. This dataset was integrated from 8 pooled whole genome resequencing datasets generated from 35 individuals each from 8 distinct commercial or autochthonous breeds (Italian Large White, Italian Duroc, Italian Landrace, Apulo Calabrese, Cinta Senese, Casertana, Mora Romagnola, Nero Siciliano), respectively. Individual and pooled pig genome datasets were searched for polymorphisms in 135 annotated candidate genes, including 25 genes involved in androsterone and skatole biochemical related pathways. Short reads from these genomes were aligned using bowtie to a customized reference sequence generated from the reference pig genome, including sequence of selected genes (with depth ranging from 4 to 40X for each genome). A total of 100k variants were identified (2.3% in coding regions with about 500 missense mutations and a few other potential functional mutations). About 15% of these numbers refers to genes encoding enzymes involved in the androsterone and skatole biochemical pathways. This study provided an overview of the variability in targeted gene regions potentially involved in determining boar taint in pigs. Partially funded by European Union’s H2020 RIA program (grant agreement no. 634476). Abstract reflects the authors’ view. European Union Agency is not responsible for any use that may be made of the information it contains.
70. Mining whole genome resequencing data to identify functional mutations in boar taintcandidate genes
- Author
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Schiavo, G, Bovo, S, Cheloni, S, Ribani, A, Geraci, C, Gallo, M, Etherington, G, Di Palma, F, and Fontanesi, L
- Subjects
2. Zero hunger - Abstract
Next generation sequencing applied in pigs have recently produced re-sequenced pig genome data from different individuals belonging to a large variety of breeds. The availability of these large datasets is opening new opportunities to mine public nucleotide archives and identify mutations that could putatively affect economic relevant traits. Moreover, resequencing data from pooled pig DNA could provide cost-effective whole genome information from a large number of animals. In this study, we mined 110 individual pig genomes retrieved from the European Nucleotide Archive and from proprietary datasets generated from pigs of 28 different breeds. This dataset was integrated from 8 pooled whole genome resequencing datasets generated from 35 individuals each from 8 distinct commercial or autochthonous breeds (Italian Large White, Italian Duroc, Italian Landrace, Apulo Calabrese, Cinta Senese, Casertana, Mora Romagnola, Nero Siciliano), respectively. Individual and pooled pig genome datasets were searched for polymorphisms in 135 annotated candidate genes, including 25 genes involved in androsterone and skatole biochemical related pathways. Short reads from these genomes were aligned using bowtie to a customized reference sequence generated from the reference pig genome, including sequence of selected genes (with depth ranging from 4 to 40X for each genome). A total of 100k variants were identified (2.3% in coding regions with about 500 missense mutations and a few other potential functional mutations). About 15% of these numbers refers to genes encoding enzymes involved in the androsterone and skatole biochemical pathways. This study provided an overview of the variability in targeted gene regions potentially involved in determining boar taint in pigs. Partially funded by European Union’s H2020 RIA program (grant agreement no. 634476). Abstract reflects the authors’ view. European Union Agency is not responsible for any use that may be made of the information it contains.
71. An X-ray diffraction study of liquid zinc
- Author
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Etherington, G., primary and Wagner, C.N.J., additional
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- 1984
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72. NEUTRON DIFFRACTION STUDIES OF RARE EARTH IONS IN GLASSES
- Author
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Wright, A. C., primary, Etherington, G., additional, Erwin Desa, J. A., additional, and Sinclair, R. N., additional
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- 1982
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73. Structure of Be43HfxZr57−x metallic glasses
- Author
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Maret, M., primary, Soper, A., additional, Etherington, G., additional, and Wagner, C.N.J., additional
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- 1984
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74. An X-ray diffraction study of the structure of barium fluorozirconate and fluorohafnate glasses
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Etherington, G., primary, Keller, L., additional, Lee, A., additional, Wagner, C.N.J., additional, and Almeida, R.M., additional
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- 1984
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75. Structural study of Be43HfxZr57-x metallic glasses by X-ray and neutron diffraction
- Author
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Maret, M., primary, Wagner, C.N.J., additional, Etherington, G., additional, Soper, A., additional, and Tanner, L.E., additional
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- 1986
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76. A neutron diffraction study of the structure of evaporated amorphous germanium
- Author
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Etherington, G., primary, Wright, A.C., additional, Wenzel, J.T., additional, Dore, J.C., additional, Clarke, J.H., additional, and Sinclair, R.N., additional
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- 1982
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77. Identification and localisation of the NB-LRR gene family within the potato genome
- Author
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Jupe Florian, Pritchard Leighton, Etherington Graham J, MacKenzie Katrin, Cock Peter JA, Wright Frank, Sharma Sanjeev Kumar, Bolser Dan, Bryan Glenn J, Jones Jonathan DG, and Hein Ingo
- Subjects
Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The potato genome sequence derived from the Solanum tuberosum Group Phureja clone DM1-3 516 R44 provides unparalleled insight into the genome composition and organisation of this important crop. A key class of genes that comprises the vast majority of plant resistance (R) genes contains a nucleotide-binding and leucine-rich repeat domain, and is collectively known as NB-LRRs. Results As part of an effort to accelerate the process of functional R gene isolation, we performed an amino acid motif based search of the annotated potato genome and identified 438 NB-LRR type genes among the ~39,000 potato gene models. Of the predicted genes, 77 contain an N-terminal toll/interleukin 1 receptor (TIR)-like domain, and 107 of the remaining 361 non-TIR genes contain an N-terminal coiled-coil (CC) domain. Physical map positions were established for 370 predicted NB-LRR genes across all 12 potato chromosomes. The majority of NB-LRRs are physically organised within 63 identified clusters, of which 50 are homogeneous in that they contain NB-LRRs derived from a recent common ancestor. Conclusions By establishing the phylogenetic and positional relationship of potato NB-LRRs, our analysis offers significant insight into the evolution of potato R genes. Furthermore, the data provide a blueprint for future efforts to identify and more rapidly clone functional NB-LRR genes from Solanum species.
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- 2012
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78. Influence of anatomical factors on particle deposition in the nose
- Author
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Ha¨ußermann, S., Bailey, A.G., Bailey, M.R., Etherington, G., Guilmette, R.A., and Youngman, M.J.
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- 2000
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79. Post-traumatic thoracic scoliosis with rib head dislocation and intrusion into the spinal canal: a case report and review of literature.
- Author
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Kishen TJ, Mohapatra B, Diwan AD, Etherington G, Kishen, Thomas J, Mohapatra, Bibhudendu, Diwan, Ashish D, and Etherington, Greg
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The objective of the study was to report a rare occurrence of dislocation and intrusion of two rib heads into the spinal canal at the convex apex of a post-traumatic thoracic scoliosis in an adult in the absence of any neurological impairment. A 47-year-old male presented with a slowly progressive, post-traumatic thoracic scoliosis and a mild aching sensation over the posterior chest wall. The lower limb neurology and bowel and bladder function were normal. There was no clinical evidence of neurofibromatosis. CT scans showed that the 8th and 9th ribs on the convex apex of the scoliotic curve had intruded into the spinal canal and were lying adjacent to the dura and spinal cord. The MRI scan did not show any cord signal intensity changes. Although rib dislocation and intrusion into the spinal canal is uncommon, images should be carefully analysed to rule out this condition in sharp angular scoliotic curves. [ABSTRACT FROM AUTHOR]
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- 2010
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80. Structure of Be 43Hf xZr 57−x metallic glasses
- Author
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Maret, M., Soper, A., Etherington, G., and Wagner, C.N.J.
- Published
- 1984
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81. Describing variability in pig genes involved in coronavirus infections for a One Health perspective in conservation of animal genetic resources
- Author
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Giuseppina Schiavo, Valeria Taurisano, Raquel Quintanilla, Anisa Ribani, Juan García-Casco, Rui Charneca, Valerio Joe Utzeri, Marie-José Mercat, Estefania Alves, Fabián García, Graham J Etherington, Samuele Bovo, Juliette Riquet, Danijel Karolyi, Christoph Zimmer, Ivona Djurkin Kušec, Federica Di Palma, Ana Isabel Fernández, G. Usai, Violeta Razmaite, María Muñoz, Yolanda Núñez, José Pedro Araújo, Martin Škrlep, Radomir Savić, J.M. Martins, Maurizio Gallo, Luca Fontanesi, Čedomir Radović, Mohamad Ballan, Cristina Óvilo, Riccardo Bozzi, University of Bologna, Instituto Nacional de Investigación Agropecuaria (INIA), Centro de Investigação de Montanha [Bragança, Portugal] (CIMO), Instituto Politécnico de Bragança, Department of Agriculture, Food, Environment and Forestry (DAGRI), Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Universidade de Évora, University of East Anglia [Norwich] (UEA), Josip Juraj Strossmayer University of Osijek, Earlham Institute [Norwich], University of Zagreb, Associazione Nazionale Allevatori Suini, Institut du Porc (IFIP), Institute of Agrifood Research and Technology (IRTA), Institute for Animal Husbandry, Lithuanian University of Health Sciences [Kaunas, Lithuania], Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Belgrade [Belgrade], Kmetijski Inštitut Slovenije (KIS), AGRIS sardegna, Bäuerliche Erzeugergemeinschaft Schwäbisch Hall (BESH), European Cooperation in Science and Technology (COST)Ministry of Foreign Affairs of ItalyUniversity of Bologna RFO 2016-2019 programmesItalian MIUR 2017 PigPhenomics projectEuropean Commission634476European Open Science Cloud (EOSC) Secretariat, project 'Application of animal genomics and data mining to predict and monitor novel coronavirus potential infections (VirAnimalOne)'EGI call for COVID-19 research projects (AnGen1H project)Por Fesr Emilia-Romagna 2014-2020 (actions 1.1.4 and 1.2.2-Bando per sostenere progetti di ricerca ed innovazione per lo sviluppo di soluzioni finalizzate al contrasto dell'epidemia da COVID-19-Project LIVESTOCK-STOP-COVI), European Project: 634476,H2020,H2020-SFS-2014-2,TREASURE(2015), Producció Animal, Genètica i Millora Animal, University of Bologna/Università di Bologna, Università degli Studi di Firenze = University of Florence (UniFI), Institut de Recerca i Tecnologia Agroalimentàries = Institute of Agrifood Research and Technology (IRTA), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Università di Bologna, European Commission, Bovo, Samuele, Schiavo, Giuseppina, Ribani, Anisa, Utzeri, Valerio J, Taurisano, Valeria, Araujo, Jose P, Bozzi, Riccardo, Charneca, Rui, Di Palma, Federica, Djurkin Kušec, Ivona, Etherington, Graham, Fernandez, Ana I, Suárez García, Fabián, García-Casco, Juan, Karolyi, D 0000-003-0409-9071], Martins, José Manuel, Mercat, Marie-José, Núñez, Yolanda, Radović, Čedomir, Razmaite, Violeta, Riquet, Juliette, Savić, Radomir, Škrlep, Martin, Usai, Graziano, Ovilo, Cristina, Bovo S., Schiavo G., Ribani A., Utzeri V.J., Taurisano V., Ballan M., Munoz M., Alves E., Araujo J.P., Bozzi R., Charneca R., Di Palma F., Djurkin Kusec I., Etherington G., Fernandez A.I., Garcia F., Garcia-Casco J., Karolyi D., Gallo M., Martins J.M., Mercat M.-J., Nunez Y., Quintanilla R., Radovic C., Razmaite V., Riquet J., Savic R., Skrlep M., Usai G., Zimmer C., Ovilo C., and Fontanesi L.
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0301 basic medicine ,Candidate gene ,Population genetics ,Swine ,MESH: Coronavirus Infections ,Sus scrofa ,MESH: Angiotensin-Converting Enzyme 2 ,MESH: One Health ,Breeding ,MESH: INDEL Mutation ,0302 clinical medicine ,Gene Frequency ,INDEL Mutation ,Receptors ,Receptors, Viru ,MESH: Animals ,MESH: Serine Endopeptidases ,MESH: Genetic Variation ,MESH: High-Throughput Nucleotide Sequencing ,MESH: Swine ,2. Zero hunger ,Genetics ,education.field_of_study ,Multidisciplinary ,MESH: Polymorphism, Single Nucleotide ,Serine Endopeptidases ,High-Throughput Nucleotide Sequencing ,Single Nucleotide ,Genomics ,Virus ,Serine Endopeptidase ,One Health ,030220 oncology & carcinogenesis ,Microsomal aminopeptidase ,Medicine ,Infectious diseases ,Receptors, Virus ,Angiotensin-Converting Enzyme 2 ,Coronavirus Infections ,MESH: Whole Genome Sequencing ,Human ,Agricultural genetics ,pig ,local breed ,whole genome sequencing ,coronavirus ,Science ,Dipeptidyl Peptidase 4 ,Population ,MESH: Genetics, Population ,Context (language use) ,MESH: Breeding ,CD13 Antigens ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Animals ,Genetics, Population ,Humans ,Whole Genome Sequencing ,Genetic Variation ,Genetic variation ,MESH: Gene Frequency ,Polymorphism ,education ,Data mining ,Gene ,CD13 Antigen ,Animal breeding ,Whole genome sequencing ,MESH: Humans ,Animal ,Coronavirus Infection ,Host (biology) ,Virus receptor ,MESH: CD13 Antigens ,MESH: Dipeptidyl Peptidase 4 ,MESH: Receptors, Virus ,MESH: Sus scrofa ,[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics ,030104 developmental biology ,Dipeptidyl peptidase IV ,Next-generation sequencing ,Genetic markers ,Serine proteinase - Abstract
14 Pág. Departamento de Mejora Genética Animal, Coronaviruses silently circulate in human and animal populations, causing mild to severe diseases. Therefore, livestock are important components of a "One Health" perspective aimed to control these viral infections. However, at present there is no example that considers pig genetic resources in this context. In this study, we investigated the variability of four genes (ACE2, ANPEP and DPP4 encoding for host receptors of the viral spike proteins and TMPRSS2 encoding for a host proteinase) in 23 European (19 autochthonous and three commercial breeds and one wild boar population) and two Asian Sus scrofa populations. A total of 2229 variants were identified in the four candidate genes: 26% of them were not previously described; 29 variants affected the protein sequence and might potentially interact with the infection mechanisms. The results coming from this work are a first step towards a "One Health" perspective that should consider conservation programs of pig genetic resources with twofold objectives: (i) genetic resources could be reservoirs of host gene variability useful to design selection programs to increase resistance to coronaviruses; (ii) the described variability in genes involved in coronavirus infections across many different pig populations might be part of a risk assessment including pig genetic resources., This work has received funding from the University of Bologna RFO 2016-2019 programmes, the Italian MIUR 2017 PigPhenomics project, from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 634476 for the project with acronym TREASURE, from the European Open Science Cloud (EOSC) Secretariat, project “Application of animal genomics and data mining to predict and monitor novel coronavirus potential infections (VirAnimalOne)”, the EGI call for COVID-19 research projects (AnGen1H project) and from the Por Fesr Emilia-Romagna 2014-2020 (actions 1.1.4 and 1.2.2—Bando per sostenere progetti di ricerca ed innovazione per lo sviluppo di soluzioni finalizzate al contrasto dell’epidemia da COVID-19—Project LIVESTOCK-STOP-COVI). The content of this article reflects only the authors' view and the European Union Agency is not responsible for any use that may be made of the information it contains.
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- 2021
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82. Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems
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Valerio Joe Utzeri, Ana Isabel Fernández, G. Usai, Marjeta Čandek-Potokar, María Muñoz, José Pedro Araújo, Maurizio Gallo, Riccardo Bozzi, Čedomir Radović, Fabián García, Giuseppina Schiavo, Federica Di Palma, Cristina Óvilo, Marie J. Mercat, Juan García-Casco, Christoph Zimmer, Anisa Ribani, Juliette Riquet, Danijel Karolyi, Vladimir Margeta, Samuele Bovo, Luca Fontanesi, Giulia Moscatelli, Radomir Savić, Violeta Razmaite, Estefania Alves, Rui Charneca, J.M. Martins, Raquel Quintanilla, Yolanda Núñez, Graham J Etherington, University of Bologna/Università di Bologna, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology (INIA), Instituto Politécnico de Viana do Castelo = Polytechnic Institute of Viana do Castelo (IPVC), Università degli Studi di Firenze = University of Florence (UniFI), Kmetijski Institut Slovenije, Partenaires INRAE, Universidade de Évora, Earlham Institute [Norwich], University of Zagreb, Associazione Nazionale Allevatori Suini, Josip Juraj Strossmayer University of Osijek, Institut du Porc (IFIP), Institut de Recerca i Tecnologia Agroalimentàries = Institute of Agrifood Research and Technology (IRTA), Institute for Animal Husbandry, Lithuanian University of Health Sciences [Kaunas, Lithuania], Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Belgrade [Belgrade], AGRIS sardegna, Bäuerliche Erzeugergemeinschaft Schwäbisch Hall (BESH), Europe-FAANG COST Action, University of Bologna RFO 2016–2019 programme, European Project: 634476,H2020,H2020-SFS-2014-2,TREASURE(2015), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Producció Animal, Genètica i Millora Animal, University of Bologna, Instituto Politécnico de Viana do Castelo, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Institute of Agrifood Research and Technology (IRTA), Bovo S., Ribani A., Munoz M., Alves E., Araujo J.P., Bozzi R., Candek-Potokar M., Charneca R., Di Palma F., Etherington G., Fernandez A.I., Garcia F., Garcia-Casco J., Karolyi D., Gallo M., Margeta V., Martins J.M., Mercat M.J., Moscatelli G., Nunez Y., Quintanilla R., Radovic C., Razmaite V., Riquet J., Savic R., Schiavo G., Usai G., Utzeri V.J., Zimmer C., Ovilo C., and Fontanesi L.
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Male ,Genotyping Techniques ,Swine ,Acclimatization ,[SDV]Life Sciences [q-bio] ,Breeding ,Fixation index ,Domestication ,Chromosome regions ,local pig breeds ,WGS ,genome variability ,ComputingMilieux_MISCELLANEOUS ,lcsh:SF1-1100 ,2. Zero hunger ,0303 health sciences ,Genome ,biology ,Genomics ,04 agricultural and veterinary sciences ,General Medicine ,Adaptation, Physiological ,Alentejana ,Algorithm ,Europe ,Phenotype ,Pigs ,Female ,Algorithms ,SNPs ,Research Article ,lcsh:QH426-470 ,Genotype ,Whole-genome sequencing ,pig ,autochthonous breeds ,selection ,adaptation ,Polymorphism, Single Nucleotide ,Crossbreed ,03 medical and health sciences ,Genetics ,Animals ,Selection, Genetic ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Whole genome sequencing ,Genetic diversity ,Models, Genetic ,Whole Genome Sequencing ,Animal ,Directional selection ,0402 animal and dairy science ,biology.organism_classification ,040201 dairy & animal science ,Bísaro pig ,Alentejano pig ,European local breeds ,lcsh:Genetics ,Evolutionary biology ,Genomic ,Animal Science and Zoology ,lcsh:Animal culture ,Genotyping Technique - Abstract
Background Natural and artificial directional selection in cosmopolitan and autochthonous pig breeds and wild boars have shaped their genomes and resulted in a reservoir of animal genetic diversity. Signatures of selection are the result of these selection events that have contributed to the adaptation of breeds to different environments and production systems. In this study, we analysed the genome variability of 19 European autochthonous pig breeds (Alentejana, Bísara, Majorcan Black, Basque, Gascon, Apulo-Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda, Krškopolje pig, Black Slavonian, Turopolje, Moravka, Swallow-Bellied Mangalitsa, Schwäbisch-Hällisches Schwein, Lithuanian indigenous wattle and Lithuanian White old type) from nine countries, three European commercial breeds (Italian Large White, Italian Landrace and Italian Duroc), and European wild boars, by mining whole-genome sequencing data obtained by using a DNA-pool sequencing approach. Signatures of selection were identified by using a single-breed approach with two statistics [within-breed pooled heterozygosity (HP) and fixation index (FST)] and group-based FST approaches, which compare groups of breeds defined according to external traits and use/specialization/type. Results We detected more than 22 million single nucleotide polymorphisms (SNPs) across the 23 compared populations and identified 359 chromosome regions showing signatures of selection. These regions harbour genes that are already known or new genes that are under selection and relevant for the domestication process in this species, and that affect several morphological and physiological traits (e.g. coat colours and patterns, body size, number of vertebrae and teats, ear size and conformation, reproductive traits, growth and fat deposition traits). Wild boar related signatures of selection were detected across all the genome of several autochthonous breeds, which suggests that crossbreeding (accidental or deliberate) occurred with wild boars. Conclusions Our findings provide a catalogue of genetic variants of many European pig populations and identify genome regions that can explain, at least in part, the phenotypic diversity of these genetic resources.
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- 2020
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83. Genome-wide detection of copy number variants in European autochthonous and commercial pig breeds by whole-genome sequencing of DNA pools identified breed-characterising copy number states
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Čedomir Radović, Valerio Joe Utzeri, Rui Charneca, Juan García-Casco, Christoph Zimmer, Raquel Quintanilla, Samuele Bovo, Danijel Karolyi, E. Alves, Angeles Fernandez, Luca Fontanesi, João P. Araújo, J.M. Martins, Martin Škrlep, F. Di Palma, Radomir Savić, Marie-José Mercat, Ricardo Bozzi, María Muñoz, Violeta Razmaite, Graham J Etherington, Kristina Gvozdanović, Giuseppina Schiavo, Anisa Ribani, Yolanda Núñez, Maurizio Gallo, G. Usai, Cristina Óvilo, Felisa Laíz García, Juliette Riquet, Bovo S., Ribani A., Munoz M., Alves E., Araujo J.P., Bozzi R., Charneca R., Di Palma F., Etherington G., Fernandez A.I., Garcia F., Garcia-Casco J., Karolyi D., Gallo M., Gvozdanovic K., Martins J.M., Mercat M.J., Nunez Y., Quintanilla R., Radovic C., Razmaite V., Riquet J., Savic R., Schiavo G., Skrlep M., Usai G., Utzeri V.J., Zimmer C., Ovilo C., Fontanesi L., University of Bologna/Università di Bologna, Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO), Instituto Nacional de Investigación Agropecuaria (INIA), Instituto Politécnico de Viana do Castelo = Polytechnic Institute of Viana do Castelo (IPVC), UNIVERSITY OF FIRENZE (UNIVERSITY OF FIRENZE), Università degli Studi di Firenze = University of Florence (UniFI), Universidade de Évora, Earlham Institute [Norwich], University of Zagreb, Assoc Nazl Allevatori Suini, University of Osijek, Institut du Porc (IFIP), Institut de Recerca i Tecnologia Agroalimentàries = Institute of Agrifood Research and Technology (IRTA), Lithuanian University of health Sciences, Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Belgrade [Belgrade], Agricultural Institute of Slovenia, Agenzia della Regione Sardegna per la Ricerca Scientifica (AGRIS), Bäuerliche Erzeugergemeinschaft Schwäbisch Hall, Institute of animal husbandry, Slovenian Agency of Research / P4-0133, European Project: 634476,H2020,H2020-SFS-2014-2,TREASURE(2015), University of Bologna, Instituto Politécnico de Viana do Castelo, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Institute of Agrifood Research and Technology (IRTA), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Producció Animal, and Genètica i Millora Animal
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0301 basic medicine ,Male ,[SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] ,DNA Copy Number Variations ,Sus scrofa ,Breeding ,Genome ,DNA sequencing ,03 medical and health sciences ,Species Specificity ,copy number variant ,ELOVL6 ,genetic resource ,KIT ,MSRB3 ,next-generation sequencing ,ZNF622 ,Genetics ,Animals ,Copy-number variation ,Gene ,2. Zero hunger ,Whole genome sequencing ,Genetic diversity ,biology ,Genetic ressource ,Whole Genome Sequencing ,Animal ,0402 animal and dairy science ,Turopolje pig ,04 agricultural and veterinary sciences ,General Medicine ,DNA ,biology.organism_classification ,040201 dairy & animal science ,Breed ,030104 developmental biology ,Phenotype ,Italy ,Evolutionary biology ,Animal Science and Zoology ,Female - Abstract
In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent important genetic resources for this species. The genome of 725 pigs was sequenced using a breed‐specific DNA pooling approach (30–35 animals per pool) obtaining an average depth per pool of 42×. This approach maximised CNV discovery as well as the related copy number states characterising, on average, the analysed breeds. By mining more than 17.5 billion reads, we identified a total of 9592 CNVs (~683 CNVs per breed) and 3710 CNV regions (CNVRs; 1.15% of the reference pig genome), with an average of 77 CNVRs per breed that were considered as private. A few CNVRs were analysed in more detail, together with other information derived from sequencing data. For example, the CNVR encompassing the KIT gene was associated with coat colour phenotypes in the analysed breeds, confirming the role of the multiple copies in determining breed‐specific coat colours. The CNVR covering the MSRB3 gene was associated with ear size in most breeds. The CNVRs affecting the ELOVL6 and ZNF622 genes were private features observed in the Lithuanian Indigenous Wattle and in the Turopolje pig breeds respectively. Overall, the genome variability unravelled here can explain part of the genetic diversity among breeds and might contribute to explain their origin, history and adaptation to a variety of production systems. info:eu-repo/semantics/acceptedVersion
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- 2020
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84. Eurados review of retrospective dosimetry techniques for internal exposures to ionising radiation and their applications
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Natalia V. Sotnik, J Osko, M. A. Lopez, Marina O. Degteva, I. Guclu, Elena A. Shishkina, Alicja Jaworska, Elizabeth A. Ainsbury, Paola Fattibene, Clemens Woda, Stacey L. McComish, I. Malatova, S. Della Monaca, Horst Romm, Augusto Giussani, Sergei Y. Tolmachev, David Lloyd, Laurence Roy, D Melo, George Etherington, Albrecht Wieser, Sandrine Roch-Lefèvre, M. J. Youngman, Antonella Testa, A Rojo, Giussani, A., Lopez, M. A., Romm, H., Testa, A., Ainsbury, E. A., Degteva, M., Della Monaca, S., Etherington, G., Fattibene, P., Guclu, I., Jaworska, A., Lloyd, D. C., Malatova, I., Mccomish, S., Melo, D., Osko, J., Rojo, A., Roch-Lefevre, S., Roy, L., Shishkina, E., Sotnik, N., Tolmachev, S. Y., Wieser, A., Woda, C., Youngman, M., Federal Office for Radiation Protection (BfS), Centro de Investigaciones Energéticas Medioambientales y Tecnológicas [Madrid] (CIEMAT), Federal Office for Radiation Protection, (BfS), ENEA Centro Ricerche Casaccia, Public Health England [London], Urals Research Center for Radiation Medicine, Istituto Superiore di Sanità (ISS), CRECE/Radiation Protection Division, Health Protection Agency (HPA), Turkish Atomic Energy Authority, EPER, Norwegian Radiation Protection Authority (NRPA), Public Health England, Institute of Biophysycs, State Research Centre of Russia, US Transuranium & Uranium Registries, Melohill Technology, National Centre for Nuclear Research (Warszawa), Nuclear Regulatory Authority of Argentina, PSE-ENV/SEREN/BERAP, Institut de Radioprotection et de Sûreté Nucléaire (IRSN), PSE-SANTE/SESANE, Southern Urals Biophysics Institute, Helmotz Centrum- München (HZM), Institute of Radiation Protection, and Helmholtz Zentrum München (HMGU)
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Biological dosimetry ,Internal dosimetry ,[SDV]Life Sciences [q-bio] ,Biophysics ,Biokinetics ,EPR dosimetry ,Review ,030218 nuclear medicine & medical imaging ,Ionizing radiation ,03 medical and health sciences ,0302 clinical medicine ,Internal exposures ,Radiation, Ionizing ,Dosimetry ,Animals ,Humans ,Radiometry ,General Environmental Science ,Biological Dosimetry ,Epr Dosimetry ,Internal Dosimetry ,Internal Exposures ,Radioisotopes ,Radiation ,Electron Spin Resonance Spectroscopy ,3. Good health ,030220 oncology & carcinogenesis ,Environmental science ,Epr dosimetry ,Cytogenetic Techniques ,Biomedical engineering - Abstract
This work presents an overview of the applications of retrospective dosimetry techniques in case of incorporation of radionuclides. The fact that internal exposures are characterized by a spatially inhomogeneous irradiation of the body, which is potentially prolonged over large periods and variable over time, is particularly problematic for biological and electron paramagnetic resonance (EPR) dosimetry methods when compared with external exposures. The paper gives initially specific information about internal dosimetry methods, the most common cytogenetic techniques used in biological dosimetry and EPR dosimetry applied to tooth enamel. Based on real-case scenarios, dose estimates obtained from bioassay data as well as with biological and/or EPR dosimetry are compared and critically discussed. In most of the scenarios presented, concomitant external exposures were responsible for the greater portion of the received dose. As no assay is available which can discriminate between radiation of different types and different LETs on the basis of the type of damage induced, it is not possible to infer from these studies specific conclusions valid for incorporated radionuclides alone. The biological dosimetry assays and EPR techniques proved to be most applicable in cases when the radionuclides are almost homogeneously distributed in the body. No compelling evidence was obtained in other cases of extremely inhomogeneous distribution. Retrospective dosimetry needs to be optimized and further developed in order to be able to deal with real exposure cases, where a mixture of both external and internal exposures will be encountered most of the times.
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- 2019
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85. Describing variability in pig genes involved in coronavirus infections for a One Health perspective in conservation of animal genetic resources.
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Bovo S, Schiavo G, Ribani A, Utzeri VJ, Taurisano V, Ballan M, Muñoz M, Alves E, Araujo JP, Bozzi R, Charneca R, Di Palma F, Djurkin Kušec I, Etherington G, Fernandez AI, García F, García-Casco J, Karolyi D, Gallo M, Martins JM, Mercat MJ, Núñez Y, Quintanilla R, Radović Č, Razmaite V, Riquet J, Savić R, Škrlep M, Usai G, Zimmer C, Ovilo C, and Fontanesi L
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- Angiotensin-Converting Enzyme 2 genetics, Animals, Breeding, CD13 Antigens genetics, Dipeptidyl Peptidase 4 genetics, Gene Frequency, Genetics, Population, High-Throughput Nucleotide Sequencing, Humans, INDEL Mutation, One Health, Polymorphism, Single Nucleotide, Receptors, Virus genetics, Serine Endopeptidases genetics, Swine, Whole Genome Sequencing, Coronavirus Infections genetics, Genetic Variation, Sus scrofa genetics
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Coronaviruses silently circulate in human and animal populations, causing mild to severe diseases. Therefore, livestock are important components of a "One Health" perspective aimed to control these viral infections. However, at present there is no example that considers pig genetic resources in this context. In this study, we investigated the variability of four genes (ACE2, ANPEP and DPP4 encoding for host receptors of the viral spike proteins and TMPRSS2 encoding for a host proteinase) in 23 European (19 autochthonous and three commercial breeds and one wild boar population) and two Asian Sus scrofa populations. A total of 2229 variants were identified in the four candidate genes: 26% of them were not previously described; 29 variants affected the protein sequence and might potentially interact with the infection mechanisms. The results coming from this work are a first step towards a "One Health" perspective that should consider conservation programs of pig genetic resources with twofold objectives: (i) genetic resources could be reservoirs of host gene variability useful to design selection programs to increase resistance to coronaviruses; (ii) the described variability in genes involved in coronavirus infections across many different pig populations might be part of a risk assessment including pig genetic resources.
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- 2021
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86. Newly discovered cichlid fish biodiversity threatened by hybridization with non-native species.
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Blackwell T, Ford AGP, Ciezarek AG, Bradbeer SJ, Gracida Juarez CA, Smith AM, Ngatunga BP, Shechonge A, Tamatamah R, Etherington G, Haerty W, Di Palma F, Turner GF, and Genner MJ
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- Animals, Biodiversity, Hybridization, Genetic, Introduced Species, Tanzania, Cichlids genetics
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Invasive freshwater fishes are known to readily hybridize with indigenous congeneric species, driving loss of unique and irreplaceable genetic resources. Here we reveal that newly discovered (2013-2016) evolutionarily significant populations of Korogwe tilapia (Oreochromis korogwe) from southern Tanzania are threatened by hybridization with the larger invasive Nile tilapia (Oreochromis niloticus). We use a combination of morphology, microsatellite allele frequencies and whole genome sequences to show that O. korogwe from southern lakes (Nambawala, Rutamba and Mitupa) are distinct from geographically disjunct populations in northern Tanzania (Zigi River and Mlingano Dam). We also provide genetic evidence of O. korogwe × niloticus hybrids in three southern lakes and demonstrate heterogeneity in the extent of admixture across the genome. Finally, using the least admixed genomic regions we estimate that the northern and southern O. korogwe populations most plausibly diverged ~140,000 years ago, suggesting that the geographical separation of the northern and southern groups is not a result of a recent translocation, and instead these populations represent independent evolutionarily significant units. We conclude that these newly discovered and phenotypically unique cichlid populations are already threatened by hybridization with an invasive species, and propose that these irreplaceable genetic resources would benefit from conservation interventions., (© 2020 John Wiley & Sons Ltd.)
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- 2021
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87. Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems.
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Bovo S, Ribani A, Muñoz M, Alves E, Araujo JP, Bozzi R, Čandek-Potokar M, Charneca R, Di Palma F, Etherington G, Fernandez AI, García F, García-Casco J, Karolyi D, Gallo M, Margeta V, Martins JM, Mercat MJ, Moscatelli G, Núñez Y, Quintanilla R, Radović Č, Razmaite V, Riquet J, Savić R, Schiavo G, Usai G, Utzeri VJ, Zimmer C, Ovilo C, and Fontanesi L
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- Acclimatization genetics, Adaptation, Physiological genetics, Algorithms, Animals, Breeding, Domestication, Europe, Female, Genome genetics, Genomics methods, Genotype, Male, Models, Genetic, Phenotype, Polymorphism, Single Nucleotide genetics, Whole Genome Sequencing methods, Genotyping Techniques methods, Selection, Genetic genetics, Swine genetics
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Background: Natural and artificial directional selection in cosmopolitan and autochthonous pig breeds and wild boars have shaped their genomes and resulted in a reservoir of animal genetic diversity. Signatures of selection are the result of these selection events that have contributed to the adaptation of breeds to different environments and production systems. In this study, we analysed the genome variability of 19 European autochthonous pig breeds (Alentejana, Bísara, Majorcan Black, Basque, Gascon, Apulo-Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda, Krškopolje pig, Black Slavonian, Turopolje, Moravka, Swallow-Bellied Mangalitsa, Schwäbisch-Hällisches Schwein, Lithuanian indigenous wattle and Lithuanian White old type) from nine countries, three European commercial breeds (Italian Large White, Italian Landrace and Italian Duroc), and European wild boars, by mining whole-genome sequencing data obtained by using a DNA-pool sequencing approach. Signatures of selection were identified by using a single-breed approach with two statistics [within-breed pooled heterozygosity (H
P ) and fixation index (FST )] and group-based FST approaches, which compare groups of breeds defined according to external traits and use/specialization/type., Results: We detected more than 22 million single nucleotide polymorphisms (SNPs) across the 23 compared populations and identified 359 chromosome regions showing signatures of selection. These regions harbour genes that are already known or new genes that are under selection and relevant for the domestication process in this species, and that affect several morphological and physiological traits (e.g. coat colours and patterns, body size, number of vertebrae and teats, ear size and conformation, reproductive traits, growth and fat deposition traits). Wild boar related signatures of selection were detected across all the genome of several autochthonous breeds, which suggests that crossbreeding (accidental or deliberate) occurred with wild boars., Conclusions: Our findings provide a catalogue of genetic variants of many European pig populations and identify genome regions that can explain, at least in part, the phenotypic diversity of these genetic resources.- Published
- 2020
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88. Genes Encoding Recognition of the Cladosporium fulvum Effector Protein Ecp5 Are Encoded at Several Loci in the Tomato Genome.
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Iakovidis M, Soumpourou E, Anderson E, Etherington G, Yourstone S, and Thomas C
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- Ascomycota, Cladosporium genetics, Fungal Proteins, Plant Breeding, Plant Diseases genetics, Plant Proteins genetics, Solanum lycopersicum genetics
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The molecular interactions between tomato and Cladosporium fulvum have been an important model for molecular plant pathology. Complex genetic loci on tomato chromosomes 1 and 6 harbor genes for resistance to Cladosporium fulvum , encoding receptor like-proteins that perceive distinct Cladosporium fulvum effectors and trigger plant defenses. Here, we report classical mapping strategies for loci in tomato accessions that respond to Cladosporium fulvum effector Ecp5, which is very sequence-monomorphic. We screened 139 wild tomato accessions for an Ecp5-induced hypersensitive response, and in five accessions, the Ecp5-induced hypersensitive response segregated as a monogenic trait, mapping to distinct loci in the tomato genome. We identified at least three loci on chromosomes 1, 7 and 12 that harbor distinct Cf-Ecp5 genes in four different accessions. Our mapping showed that the Cf-Ecp5 in Solanum pimpinellifolium G1.1161 is located at the Milky Way locus. The Cf-Ecp5 in Solanum pimpinellifolium LA0722 was mapped to the bottom arm of chromosome 7, while the Cf-Ecp5 genes in Solanum lycopersicum Ontario 7522 and Solanum pimpinellifolium LA2852 were mapped to the same locus on the top arm of chromosome 12. Bi-parental crosses between accessions carrying distinct Cf-Ecp5 genes revealed putative genetically unlinked suppressors of the Ecp5-induced hypersensitive response. Our mapping also showed that Cf-11 is located on chromosome 11, close to the Cf-3 locus. The Ecp5-induced hypersensitive response is widely distributed within tomato species and is variable in strength. This novel example of convergent evolution could be used for choosing different functional Cf-Ecp5 genes according to individual plant breeding needs., (Copyright © 2020 Iakovidis et al.)
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- 2020
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89. Consideration of foraminal stenosis in decompression alone versus decompression plus fusion for claudication secondary to lumbar spinal stenosis.
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Tee J, Li C, Chan P, and Etherington G
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- Constriction, Pathologic, Decompression, Surgical, Humans, Spinal Fusion adverse effects, Spinal Stenosis complications, Spinal Stenosis surgery
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- 2020
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90. Correlation of Anterior Interbody Graft Choice With Patient-Reported Outcomes in Cervical Spine Trauma.
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Lee HQ, Kow CY, Ng JS, Chan P, Ton L, Etherington G, Liew S, Hunn M, Fitzgerald M, and Tee J
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Study Design: Ambispective observational cohort study., Objectives: Synthetic graft usage avoids morbidity associated with harvest and reduces operative time. This study aims to evaluate outcomes of anterior cervical stabilization surgery using a synthetic cage in comparison with iliac crest bone graft (ICBG) following cervical spine trauma., Methods: An ambispective review was conducted on patients from the Alfred Trauma Registry. Consecutive patients treated at a level 1 trauma center, aged 18 years and older who were treated with standalone anterior cervical stabilization following spine trauma (2011-2016) were included in the study. Primary outcome measures were patient overall satisfaction, Neck Disability Index (NDI), neck pain 10-point visual analogue scale (VAS-neck) and arm pain 10-point visual analogue scale (VAS-arm). Secondary outcome measures were radiographic evidence of fusion and rate of revision surgery. All patients had follow-up for at least 1 year., Results: Between 2011 and 2016, 114 traumatic disc levels in 104 patients were treated. ICBG was used in 32% and polyetheretherketone (PEEK) cage in 68% of the patients. Both groups had similar demographic metrics. There was no significant difference in primary outcome measures between the graft types: (1) patient satisfaction ( P = .15), (2) NDI ( P = .11), (3) VAS-neck ( P = .13), and (4) VAS-arm ( P = .20). Radiology based fusion assessment 6 months postsurgery did not show statistical significance ( P = .10). The rates of revision surgery were similar., Conclusions: This study showed no significant difference in patient-reported outcome measures when comparing the usage of PEEK cage and ICBG in anterior stand alone cervical spine stabilization. Level 1 evidence studies are required to further investigate this finding., Competing Interests: Declaration of Conflicting Interests: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2019
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91. Monitoring and Dose Assessment for Children Following a Radiation Emergency-Part II: Calibration Factors for Thyroid Monitoring.
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Li C, Tremblay M, Capello K, Kurihara O, Youngman M, Etherington G, Ansari A, López MA, Franck D, and Dewji S
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- Adolescent, Calibration, Child, Child, Preschool, Emergencies, Female, Humans, Infant, Male, Models, Biological, Radiation Dosage, Whole-Body Counting, Computer Simulation, Monte Carlo Method, Phantoms, Imaging, Radiation Injuries prevention & control, Radiation Monitoring methods, Radiation Protection methods, Thyroid Gland radiation effects
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Past radiological and nuclear accidents have demonstrated that monitoring a large number of children following a radiological and nuclear emergency can be challenging, in accommodating their needs as well as adapting monitoring protocols and applying age-specific biokinetics to account for various ages and body sizes. This paper presents the derived calibration factors for thyroid monitoring of children of all ages recommended by the International Commission on Radiological Protection using four selected detectors at given times following a short-term (acute) intake of I by inhalation. These calibration factors were derived by Monte Carlo simulations using the models of various detectors and pediatric voxel phantoms. A collection of lookup tables is presented in this paper which may be directly used as a quick reference by emergency response personnel or technical experts performing thyroid monitoring and assessment without doing time-consuming calculations.
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- 2019
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92. Collateral contamination concomitant to the polonium-210 poisoning of Mr Alexander Litvinenko.
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Harrison J, Smith T, Fell T, Smith J, Ham G, Haylock R, Hodgson A, and Etherington G
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- Epidemiological Monitoring, Famous Persons, Humans, London, Male, Occupational Exposure, Public Facilities, Radiation Dosage, Tissue Distribution, Acute Radiation Syndrome diagnosis, Environmental Monitoring methods, Homicide, Polonium poisoning
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Mr Litvinenko died on 23 November 2006, having been poisoned with polonium-210 on 1 November, with evidence of a previous poisoning attempt during October 2006. Measurements of
210 Po in urine samples were made for a large number of people to determine whether they may have been contaminated. In the majority of cases, measured levels were attributable to the presence of210 Po from normal dietary sources. For a small number of cases, elevated levels provided evidence of direct contamination associated with the poisonings. For one individual, while estimated doses were below thresholds for irreversible organ damage, a notably increased risk of cancer can be inferred. The use of the chelating agent, unithiol, to increase210 Po excretion in this case was only moderately effective in reducing doses received.- Published
- 2017
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93. Managing Internal Radiation Contamination Following an Emergency: Identification of Gaps and Priorities.
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Li C, Ansari A, Etherington G, Jourdain JR, Kukhta B, Kurihara O, Lopez MA, Ménétrier F, Alves Dos Reis A, Solomon S, Zhang J, and Carr Z
- Subjects
- Adolescent, Biological Assay, Brachytherapy, Chernobyl Nuclear Accident, Child, Child, Preschool, Data Collection, Emergencies, Fukushima Nuclear Accident, Guidelines as Topic, Humans, Infant, Infant, Newborn, Program Development, Radiation Dosage, Radiation Protection methods, Risk, World Health Organization, Disaster Planning methods, Environmental Exposure analysis, Radiation Monitoring methods, Radioactive Hazard Release prevention & control
- Abstract
Following a radiological or nuclear emergency, first responders and the public may become internally contaminated with radioactive materials, as demonstrated during the Goiânia, Chernobyl and Fukushima accidents. Timely monitoring of the affected populations for potential internal contamination, assessment of radiation dose and the provision of necessary medical treatment are required to minimize the health risks from the contamination. This paper summarizes the guidelines and tools that have been developed, and identifies the gaps and priorities for future projects., (© World Health Organisation 2016. All rights reserved. The World Health Organization has granted Oxford University Press permission for the reproduction of this article.)
- Published
- 2016
- Full Text
- View/download PDF
94. Pan-spinal infection: a case series and review of the literature.
- Author
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Kow CY, Chan P, Etherington G, Ton L, Liew S, Cheng AC, and Rosenfeld JV
- Abstract
Background: Panspinal infection usually presents with fever, back pain, neurological deficit, and in advanced cases multi-organ failure and septic shock. The choice of treatment for panspinal infection is challenging because these patients are usually medically unstable with severe neurological compromise. The objective of this study is to review management and long term outcomes for patients with panspinal infection., Methods: A retrospective review of patients with panspinal infection treated in our center over a 5-year period [Jan 2010-Dec 2014] and a review of the current published literatures was undertaken., Results: We identified 4 patients with panspinal infection. One case was managed medically due to high perioperative risk, whilst the other three were managed surgically whilst on antibiotic therapy. All 3 cases managed surgically improved neurologically and infection subsided, whereas the patient managed medically did not change neurologically and infection subsided., Conclusions: Patients with panspinal infection should be treated surgically unless the medical risk of surgery or anaesthesia is prohibitive., Competing Interests: The authors have no conflicts of interest to declare.
- Published
- 2016
- Full Text
- View/download PDF
95. Acute traumatic cord injury associated with ossified ligamentum flavum.
- Author
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Kow CY, Chan P, Etherington G, and Rosenfeld JV
- Subjects
- Acute Disease, Adult, Aged, Athletic Injuries complications, Athletic Injuries surgery, Decompression, Surgical methods, Female, Humans, Ligamentum Flavum surgery, Male, Middle Aged, Ossification, Heterotopic complications, Ossification, Heterotopic surgery, Paraplegia diagnostic imaging, Paraplegia etiology, Paraplegia surgery, Spinal Cord Injuries etiology, Spinal Cord Injuries surgery, Thoracic Vertebrae surgery, Athletic Injuries diagnostic imaging, Ligamentum Flavum diagnostic imaging, Ossification, Heterotopic diagnostic imaging, Spinal Cord Injuries diagnostic imaging, Thoracic Vertebrae diagnostic imaging
- Abstract
Ossification of the ligamentum flavum (OLF) is an uncommon condition, which usually occurs amongst people of Asian descent, and most commonly in the thoracic spine region. Whilst often asymptomatic, OLF can cause spinal canal stenosis, with patients presenting with back pain, posterior cord syndrome or myelopathy. We present a rare case of acute spinal cord injury associated with OLF after a kite surfing accident, with the resulting paraplegia partially improved after decompression was performed. The prevalence, presentation and management of OLF are also discussed., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
96. Worker doses and potential health effects resulting from the accident at the Fukushima nuclear power plant in 2011.
- Author
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Etherington G, Zhang W, Harrison J, and Walsh L
- Subjects
- Adult, Dose-Response Relationship, Radiation, Humans, Middle Aged, Neoplasms, Radiation-Induced, Nuclear Power Plants, Proportional Hazards Models, Radiation Dosage, Reproducibility of Results, Risk Assessment, Young Adult, Fukushima Nuclear Accident, Neoplasms etiology, Occupational Exposure, Radiation Monitoring methods, Radiometry methods
- Abstract
Purpose: The reliability of exposure scenarios used in the World Health Organization's Health Risk Assessment (HRA) for Fukushima workers was examined. HRA risk estimates for cancer incidence in these workers were then reviewed., Materials and Methods: The HRA constructed four exposure scenarios to estimate worker radiation doses; recent individual dosimetric data were used to assess their reliability. Risks of specified cancer types attributable to radiation exposure were estimated in the HRA by calculating Lifetime Attributable Risks (LAR) for each scenario, and comparisons of LAR are provided., Results: The scenarios were confirmed as reliable for the purposes of the HRA. For the lowest dose scenario (Scenario 1: 69% of the workforce), the HRA found that any elevated cancer risk was insignificant. Significantly elevated cancer risks were, however, found for the three higher dose scenarios., Conclusions: For the highest dose scenario (Scenario 4: 13 workers), LAR values for thyroid cancer up to 3.5% were estimated, but a radiation-related increase in thyroid cancer incidence is unlikely to be observed because of the small number of workers. For the two intermediate dose scenarios, a small number of cancer cases may occur, but these are unlikely to be observed because the variability in baseline rates of cancer incidence is much larger than the predicted radiation-related incidence rates.
- Published
- 2014
- Full Text
- View/download PDF
97. A revised model for the deposition and clearance of inhaled particles in human extra-thoracic airways.
- Author
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Smith JR, Birchall A, Etherington G, Ishigure N, and Bailey MR
- Subjects
- Biological Assay, Gastrointestinal Tract radiation effects, Humans, Kinetics, Lung radiation effects, Models, Theoretical, Nose drug effects, Polystyrenes chemistry, Radiation Dosage, Reference Values, Respiration, Air Pollutants, Radioactive analysis, Indium Radioisotopes analysis, Inhalation Exposure analysis, Radiometry methods, Respiratory System pathology
- Abstract
The International Commission on Radiological Protection (ICRP) Task Group that developed the Human Respiratory Tract Model for Radiological Protection (HRTM) identified a lack of published information on aspects of the clearance of inhaled particles deposited in the human nasal passage. Using the results of a recent human volunteer study on the clearance of inhaled particles from the nose, a revised model of clearance from the extra-thoracic (ET) airways has been developed that addresses important issues for which simplifying assumptions had to be made in the ICRP Publication 66 HRTM ET model. This ET clearance model has been adopted by ICRP for inclusion in the revised HRTM. The derivation of the model and parameter values from the experimental data are explained.
- Published
- 2014
- Full Text
- View/download PDF
98. Veillonella spondylodiscitis in a healthy 76-year-old lady.
- Author
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Kishen TJ, Lindstrom ST, Etherington G, and Diwan AD
- Subjects
- Aged, Discitis diagnosis, Discitis drug therapy, Discitis surgery, Female, Gram-Negative Bacterial Infections drug therapy, Gram-Negative Bacterial Infections surgery, Humans, Lumbar Vertebrae surgery, Magnetic Resonance Imaging, Discitis microbiology, Gram-Negative Bacterial Infections diagnosis, Lumbar Vertebrae microbiology, Veillonella isolation & purification
- Abstract
Purpose: To report a case of Veillonella spondylodiscitis in a healthy 76-year-old lady., Methods: A previously healthy 76-year-old lady presented with worsening axial back pain at the thoracolumbar junction, fever and loss of weight. Examination revealed deep tenderness over the thoracolumbar junction with painful and restricted spinal movements. The lower limb motor power, sensation and reflexes were normal., Results: Radiographs of the lumbosacral spine showed evidence of spinal instability with lateral translation and loss of disc space at L1-L2. MRI scans revealed fluid intensity within the L1-L2 disc with infective debris elevating the posterior longitudinal ligament and narrowing the spinal canal. Both tissue and blood cultures were positive for the anaerobic organism, Veillonella. A staged anterior-posterior spinal surgery followed by an extended course of antibiotics resulted in the clinical improvement and normalisation of blood parameters. A review of the literature on Veillonella infections is also presented., Conclusion: The aim of this report is to bring Veillonella spondylodiscitis to the attention of spinal surgeons and infectious disease specialists and discuss the management options.
- Published
- 2012
- Full Text
- View/download PDF
99. Investigation of the potential for triterpene synthesis in rice through genome mining and metabolic engineering.
- Author
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Inagaki YS, Etherington G, Geisler K, Field B, Dokarry M, Ikeda K, Mutsukado Y, Dicks J, and Osbourn A
- Subjects
- Amino Acid Sequence, Biological Evolution, Genome, Plant genetics, Intramolecular Transferases genetics, Intramolecular Transferases metabolism, Molecular Sequence Annotation, Multigene Family, Oleanolic Acid metabolism, Oryza genetics, Phylogeny, Plant Proteins genetics, Plants, Genetically Modified genetics, Plants, Genetically Modified metabolism, Poaceae genetics, Sequence Alignment, Squalene metabolism, Sterol 14-Demethylase genetics, Sterol 14-Demethylase metabolism, Oleanolic Acid analogs & derivatives, Oryza metabolism, Plant Proteins metabolism, Squalene analogs & derivatives, Triterpenes metabolism
- Abstract
The first committed step in sterol biosynthesis in plants involves the cyclization of 2,3-oxidosqualene by the oxidosqualene cyclase (OSC) enzyme cycloartenol synthase. 2,3-Oxidosqualene is also a precursor for triterpene synthesis. Antimicrobial triterpenes are common in dicots, but seldom found in monocots, with the notable exception of oat. Here, through genome mining and metabolic engineering, we investigate the potential for triterpene synthesis in rice. The first two steps in the oat triterpene pathway are catalysed by a divergent OSC (AsbAS1) and a cytochrome P450 (CYP51). The genes for these enzymes form part of a metabolic gene cluster. To investigate the origins of triterpene synthesis in monocots, we analysed systematically the OSC and CYP51 gene families in rice. We also engineered rice for elevated triterpene content. We discovered a total of 12 OSC and 12 CYP51 genes in rice and uncovered key events in the evolution of triterpene synthesis. We further showed that the expression of AsbAS1 in rice leads to the accumulation of the simple triterpene, β-amyrin. These findings provide new insights into the evolution of triterpene synthesis in monocots and open up opportunities for metabolic engineering for disease resistance in rice and other cereals., (© 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.)
- Published
- 2011
- Full Text
- View/download PDF
100. Cranial subdural haematoma with concomitant spinal epidural and spinal subarachnoid haematomas: a case report.
- Author
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Kishen T, Etherington G, and Diwan A
- Subjects
- Accidental Falls, Aged, Decompression, Surgical, Diagnosis, Differential, Hematoma, Epidural, Cranial etiology, Hematoma, Epidural, Cranial surgery, Hematoma, Subdural, Acute etiology, Humans, Male, Hematoma, Epidural, Cranial diagnosis, Hematoma, Subdural, Acute diagnosis, Hematoma, Subdural, Acute surgery, Magnetic Resonance Imaging
- Abstract
A 76-year-old man presented with a 4-day history of bilateral leg pain. Magnetic resonance imaging (MRI) of the lumbosacral spine revealed a spinal subarachnoid and spinal epidural haematomas. MRI of the brain revealed a chronic intracranial subdural haematoma with a midline shift. On further questioning, the patient reported a history of a fall 6 weeks earlier and had no evidence of coagulopathy. He underwent a burr-hole decompression of the intracranial subdural haematoma. At the one-year follow-up, the patient was symptom free with no leg pain or headache. The concomitant occurrence of an intracranial subdural haematoma with spinal epidural and spinal subarachnoid haematomas is rare. MRI of the brain and the entire spine is essential in the presence of a spontaneous spinal haematoma.
- Published
- 2009
- Full Text
- View/download PDF
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