108 results on '"Butler CA"'
Search Results
52. A CEACAM6-High Airway Neutrophil Phenotype and CEACAM6-High Epithelial Cells Are Features of Severe Asthma.
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Shikotra A, Choy DF, Siddiqui S, Arthur G, Nagarkar DR, Jia G, Wright AK, Ohri CM, Doran E, Butler CA, Hargadon B, Abbas AR, Jackman J, Wu LC, Heaney LG, Arron JR, and Bradding P
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- Adult, Enzyme-Linked Immunosorbent Assay, Female, Flow Cytometry, Fluorescent Antibody Technique, GPI-Linked Proteins immunology, Gene Expression Profiling, Humans, Immunohistochemistry, Male, Middle Aged, Phenotype, Polymerase Chain Reaction, Transcriptome, Antigens, CD immunology, Asthma immunology, Cell Adhesion Molecules immunology, Epithelial Cells immunology, Neutrophils immunology, Respiratory Mucosa immunology
- Abstract
Severe asthma represents a major unmet clinical need; understanding the pathophysiology is essential for the development of new therapies. Using microarray analysis, we previously found three immunological clusters in asthma: Th2-high, Th17-high, and Th2/17-low. Although new therapies are emerging for Th2-high disease, identifying molecular pathways in Th2-low disease remains an important goal. Further interrogation of our previously described microarray dataset revealed upregulation of gene expression for carcinoembryonic Ag cell adhesion molecule (CEACAM) family members in the bronchi of patients with severe asthma. Our aim was therefore to explore the distribution and cellular localization of CEACAM6 using immunohistochemistry on bronchial biopsy tissue obtained from patients with mild-to-severe asthma and healthy control subjects. Human bronchial epithelial cells were used to investigate cytokine and corticosteroid in vitro regulation of CEACAM6 gene expression. CEACAM6 protein expression in bronchial biopsies was increased in airway epithelial cells and lamina propria inflammatory cells in severe asthma compared with healthy control subjects. CEACAM6 in the lamina propria was localized to neutrophils predominantly. Neutrophil density in the bronchial mucosa was similar across health and the spectrum of asthma severity, but the percentage of neutrophils expressing CEACAM6 was significantly increased in severe asthma, suggesting the presence of an altered neutrophil phenotype. CEACAM6 gene expression in cultured epithelial cells was upregulated by wounding and neutrophil elastase. In summary, CEACAM6 expression is increased in severe asthma and primarily associated with airway epithelial cells and tissue neutrophils. CEACAM6 may contribute to the pathology of treatment-resistant asthma via neutrophil and airway epithelial cell-dependent pathways., (Copyright © 2017 by The American Association of Immunologists, Inc.)
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- 2017
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53. PG1058 Is a Novel Multidomain Protein Component of the Bacterial Type IX Secretion System.
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Heath JE, Seers CA, Veith PD, Butler CA, Nor Muhammad NA, Chen YY, Slakeski N, Peng B, Zhang L, Dashper SG, Cross KJ, Cleal SM, Moore C, and Reynolds EC
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- Amino Acid Sequence, Bacterial Proteins genetics, Bacterial Proteins immunology, Bacterial Proteins metabolism, Bacterial Secretion Systems metabolism, Chromatography, High Pressure Liquid, Enzyme-Linked Immunosorbent Assay, Immunoblotting, Lipid-Linked Proteins genetics, Lipid-Linked Proteins immunology, Lipid-Linked Proteins metabolism, Lipopolysaccharides metabolism, Molecular Sequence Data, Mutation, Peptide Hydrolases metabolism, Phenotype, Porphyromonas gingivalis genetics, Protein Domains, Tandem Mass Spectrometry, Bacterial Proteins chemistry, Lipid-Linked Proteins chemistry, Porphyromonas gingivalis metabolism
- Abstract
Porphyromonas gingivalis utilises the Bacteroidetes-specific type IX secretion system (T9SS) to export proteins across the outer membrane (OM), including virulence factors such as the gingipains. The secreted proteins have a conserved carboxy-terminal domain essential for type IX secretion that is cleaved upon export. In P. gingivalis the T9SS substrates undergo glycosylation with anionic lipopolysaccharide (A-LPS) and are attached to the OM. In this study, comparative analyses of 24 Bacteroidetes genomes identified ten putative novel components of the T9SS in P. gingivalis, one of which was PG1058. Computer modelling of the PG1058 structure predicted a novel N- to C-terminal architecture comprising a tetratricopeptide repeat (TPR) domain, a β-propeller domain, a carboxypeptidase regulatory domain-like fold (CRD) and an OmpA_C-like putative peptidoglycan binding domain. Inactivation of pg1058 in P. gingivalis resulted in loss of both colonial pigmentation and surface-associated proteolytic activity; a phenotype common to T9SS mutants. Immunoblot and LC-MS/MS analyses of subcellular fractions revealed T9SS substrates accumulated within the pg1058 mutant periplasm whilst whole-cell ELISA showed the Kgp gingipain was absent from the cell surface, confirming perturbed T9SS function. Immunoblot, TEM and whole-cell ELISA analyses indicated A-LPS was produced and present on the pg1058 mutant cell surface although it was not linked to T9SS substrate proteins. This indicated that PG1058 is crucial for export of T9SS substrates but not for the translocation of A-LPS. PG1058 is a predicted lipoprotein and was localised to the periplasmic side of the OM using whole-cell ELISA, immunoblot and LC-MS/MS analyses of subcellular fractions. The structural prediction and localisation of PG1058 suggests that it may have a role as an essential scaffold linking the periplasmic and OM components of the T9SS., Competing Interests: The authors have declared that no competing interests exist.
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- 2016
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54. Reduced epithelial suppressor of cytokine signalling 1 in severe eosinophilic asthma.
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Doran E, Choy DF, Shikotra A, Butler CA, O'Rourke DM, Johnston JA, Kissenpfennig A, Bradding P, Arron JR, and Heaney LG
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- Adult, Asthma drug therapy, Biopsy, Bronchi metabolism, Bronchoscopy, Case-Control Studies, Cell Line, Chemokine CCL26 metabolism, Cohort Studies, Female, Gene Expression Profiling, Humans, Inflammation, Male, Middle Aged, Pulmonary Eosinophilia drug therapy, Respiratory Mucosa metabolism, Signal Transduction, Suppressor of Cytokine Signaling 3 Protein metabolism, Suppressor of Cytokine Signaling Proteins metabolism, Th2 Cells cytology, Young Adult, Asthma metabolism, Epithelial Cells metabolism, Interleukin-13 metabolism, Pulmonary Eosinophilia metabolism, Suppressor of Cytokine Signaling 1 Protein metabolism
- Abstract
Severe asthma represents a major unmet clinical need. Eosinophilic inflammation persists in the airways of many patients with uncontrolled asthma, despite high-dose inhaled corticosteroid therapy. Suppressors of cytokine signalling (SOCS) are a family of molecules involved in the regulation of cytokine signalling via inhibition of the Janus kinase-signal transducers and activators of transcription pathway. We examined SOCS expression in the airways of asthma patients and investigated whether this is associated with persistent eosinophilia.Healthy controls, mild/moderate asthmatics and severe asthmatics were studied. Whole genome expression profiling, quantitative PCR and immunohistochemical analysis were used to examine expression of SOCS1, SOCS2 and SOCS3 in bronchial biopsies. Bronchial epithelial cells were utilised to examine the role of SOCS1 in regulating interleukin (IL)-13 signalling in vitroSOCS1 gene expression was significantly lower in the airways of severe asthmatics compared with mild/moderate asthmatics, and was inversely associated with airway eosinophilia and other measures of T-helper type 2 (Th2) inflammation. Immunohistochemistry demonstrated SOCS1 was predominantly localised to the bronchial epithelium. SOCS1 overexpression inhibited IL-13-mediated chemokine ligand (CCL) 26 (eotaxin-3) mRNA expression in bronchial epithelial cells.Severe asthma patients with persistent airway eosinophilia and Th2 inflammation have reduced airway epithelial SOCS1 expression. SOCS1 inhibits epithelial IL-13 signalling, supporting its key role in regulating Th2-driven eosinophilia in severe asthma., (Copyright ©ERS 2016.)
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- 2016
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55. Patient-Centered Care and Population Health: Establishing Their Role in the Orthopaedic Practice.
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Harwood JL, Butler CA, and Page AE
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- Humans, Professional Practice, Delivery of Health Care, Orthopedics, Patient-Centered Care, Public Health
- Abstract
As health care increasingly emphasizes high value, the terms "population health" and "patient-centered care" have become common, but their application is less clear. Patient-centered care encourages using data to optimize care for an individual. Population health offers a framework to consider how to efficiently and effectively manage a condition for a population, how prevention affects large groups, and the specific distribution of a given disorder. Integrating both concepts into practice can facilitate required outcome-measure reporting and potentially improve patient outcomes. Clinical practice guidelines and appropriate use criteria are examples of reconciliation of these topics. By embracing attempts to decrease variation in treating musculoskeletal disorders while personalizing delivery to individual patients, surgeons may benefit from the improvement of both efficiency and patient experience., (Copyright © 2016 by The Journal of Bone and Joint Surgery, Incorporated.)
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- 2016
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56. Bacterial interactions in pathogenic subgingival plaque.
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Ng HM, Kin LX, Dashper SG, Slakeski N, Butler CA, and Reynolds EC
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- Adhesins, Bacterial physiology, Biofilms growth & development, Chemotaxis physiology, Chronic Periodontitis microbiology, Colony Count, Microbial, Humans, Microbial Interactions, Periodontal Pocket microbiology, Symbiosis, Virulence, Dental Plaque microbiology, Gingiva microbiology, Porphyromonas gingivalis physiology, Tannerella forsythia growth & development, Treponema denticola physiology
- Abstract
Chronic periodontitis has a polymicrobial biofilm aetiology. Polymicrobial biofilms are complex, dynamic microbial communities formed by two or more bacterial species that are important for the persistence and proliferation of participating microbes in the environment. Interspecies adherence, which often involves bacterial surface-associated molecules, and communications are essential in the spatial and temporal development of a polymicrobial biofilm, which in turn is necessary for the overall fitness of a well-organized multispecies biofilm community. In the oral cavity, interactions between key oral bacterial species, including Porphyromonas gingivalis, Treponema denticola and Tannerella forsythia, are essential for the progression of chronic periodontitis. In vivo, P. gingivalis and T. denticola are frequently found to co-exist in deep periodontal pockets and have been co-localized to the superficial layers of subgingival plaque as microcolony blooms adjacent to the pocket epithelium, suggesting possible interbacterial interactions that contribute towards disease. The motility and chemotactic ability of T. denticola, although not considered as classic virulence factors, are likely to be important in the synergistic biofilm formation with P. gingivalis. In vitro, P. gingivalis and T. denticola display a symbiotic relationship in nutrient utilization and growth promotion. Together these data suggest there is an intimate relationship between these two species that has evolved to enhance their survival and virulence., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
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- 2016
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57. Characterisation of the Porphyromonas gingivalis Manganese Transport Regulator Orthologue.
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Zhang L, Butler CA, Khan HS, Dashper SG, Seers CA, Veith PD, Zhang JG, and Reynolds EC
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- Amino Acid Sequence, Bacterial Proteins chemistry, Membrane Transport Proteins chemistry, Molecular Sequence Data, Protein Binding, Protein Structure, Secondary, Sequence Homology, Amino Acid, Bacterial Proteins metabolism, Manganese metabolism, Membrane Transport Proteins metabolism, Porphyromonas gingivalis metabolism
- Abstract
PgMntR is a predicted member of the DtxR family of transcriptional repressors responsive to manganese in the anaerobic periodontal pathogen Porphyromonas gingivalis. Our bioinformatic analyses predicted that PgMntR had divalent metal binding site(s) with elements of both manganous and ferrous ion specificity and that PgMntR has unusual twin C-terminal FeoA domains. We produced recombinant PgMntR and four variants to probe the specificity of metal binding and its impact on protein structure and DNA binding. PgMntR dimerised in the absence of a divalent transition metal cation. PgMntR bound three Mn(II) per monomer with an overall dissociation constant Kd 2.0 x 10(-11) M at pH 7.5. PgMntR also bound two Fe(II) with distinct binding affinities, Kd1 2.5 x 10(-10) M and Kd2 ≤ 6.0 x 10(-8) M at pH 6.8. Two of the metal binding sites may form a binuclear centre with two bound Mn2+ being bridged by Cys108 but this centre provided only one site for Fe2+. Binding of Fe2+ or Mn2+ did not have a marked effect on the PgMntR secondary structure. Apo-PgMntR had a distinct affinity for the promoter region of the gene encoding the only known P. gingivalis manganese transporter, FB2. Mn2+ increased the DNA binding affinity of PgMntR whilst Fe2+ destabilised the protein-DNA complex in vitro. PgMntR did not bind the promoter DNA of the gene encoding the characterised iron transporter FB1. The C-terminal FeoA domain was shown to be essential for PgMntR structure/function, as its removal caused the introduction of an intramolecular disulfide bond and abolished the binding of Mn2+ and DNA. These data indicate that PgMntR is a novel member of the DtxR family that may function as a transcriptional repressor switch to specifically regulate manganese transport and homeostasis in an iron-dependent manner.
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- 2016
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58. Lysine acetylation is a common post-translational modification of key metabolic pathway enzymes of the anaerobe Porphyromonas gingivalis.
- Author
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Butler CA, Veith PD, Nieto MF, Dashper SG, and Reynolds EC
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- Acetylation, Gene Expression Regulation, Bacterial physiology, Acetyltransferases metabolism, Lysine metabolism, Metabolic Networks and Pathways physiology, Porphyromonas gingivalis metabolism, Protein Processing, Post-Translational physiology
- Abstract
Porphyromonas gingivalis is a Gram-negative anaerobe considered to be a keystone pathogen in the development of the bacterial-associated inflammatory oral disease chronic periodontitis. Although post-translational modifications (PTMs) of proteins are commonly found to modify protein function in eukaryotes and prokaryotes, PTMs such as lysine acetylation have not been examined in P. gingivalis. Lysine acetylation is the addition of an acetyl group to a lysine which removes this amino acid's positive charge and can induce changes in a protein's secondary structure and reactivity. A proteomics based approach combining immune-affinity enrichment with high sensitivity Orbitrap mass spectrometry identified 130 lysine acetylated peptides from 92 P. gingivalis proteins. The majority of these peptides (71) were attributed to 45 proteins with predicted metabolic activity; these proteins could be mapped to several P. gingivalis metabolic pathways where enzymes catalysing sequential reactions within the same pathway were often found acetylated. In particular, the catabolic pathways of complex anaerobic fermentation of amino acids to produce energy had 12 enzymes lysine acetylated. The results suggest that lysine acetylation may be an important mechanism in metabolic regulation in P. gingivalis, which is vital for P. gingivalis survival and adaptation of its metabolism throughout infection. Statement of significance. Porphyromonas gingivalis is a keystone pathogen in the development of chronic periodontitis, an inflammatory disease of the supporting tissues of the teeth. The ability of the pathogen to induce dysbiosis and disease is related to an array of specific virulence factors and metabolic regulation that enables the bacterium to proliferate in an inflamed periodontal pocket. The mechanisms P. gingivalis uses to adapt to a changing and hostile environment are poorly understood and here we show, for the first time, that enzymes of critical metabolic pathways for energy production in this bacterium were acetylated on certain lysine residues. These enzymes were often found catalysing sequential reactions within the same catabolic pathway. The results suggest that lysine acetylation is an important mechanism of metabolic regulation in P. gingivalis vital for its adaptation and proliferation to produce disease., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2015
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59. TH2 and TH17 inflammatory pathways are reciprocally regulated in asthma.
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Choy DF, Hart KM, Borthwick LA, Shikotra A, Nagarkar DR, Siddiqui S, Jia G, Ohri CM, Doran E, Vannella KM, Butler CA, Hargadon B, Sciurba JC, Gieseck RL, Thompson RW, White S, Abbas AR, Jackman J, Wu LC, Egen JG, Heaney LG, Ramalingam TR, Arron JR, Wynn TA, and Bradding P
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- Animals, Cells, Cultured, Female, Humans, Interleukin-13 metabolism, Interleukin-17 metabolism, Mice, Mice, Inbred BALB C, Signal Transduction, Asthma immunology, Asthma metabolism, Th17 Cells metabolism, Th2 Cells metabolism
- Abstract
Increasing evidence suggests that asthma is a heterogeneous disorder regulated by distinct molecular mechanisms. In a cross-sectional study of asthmatics of varying severity (n = 51), endobronchial tissue gene expression analysis revealed three major patient clusters: TH2-high, TH17-high, and TH2/17-low. TH2-high and TH17-high patterns were mutually exclusive in individual patient samples, and their gene signatures were inversely correlated and differentially regulated by interleukin-13 (IL-13) and IL-17A. To understand this dichotomous pattern of T helper 2 (TH2) and TH17 signatures, we investigated the potential of type 2 cytokine suppression in promoting TH17 responses in a preclinical model of allergen-induced asthma. Neutralization of IL-4 and/or IL-13 resulted in increased TH17 cells and neutrophilic inflammation in the lung. However, neutralization of IL-13 and IL-17 protected mice from eosinophilia, mucus hyperplasia, and airway hyperreactivity and abolished the neutrophilic inflammation, suggesting that combination therapies targeting both pathways may maximize therapeutic efficacy across a patient population comprising both TH2 and TH17 endotypes., (Copyright © 2015, American Association for the Advancement of Science.)
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- 2015
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60. The Porphyromonas gingivalis ferric uptake regulator orthologue binds hemin and regulates hemin-responsive biofilm development.
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Butler CA, Dashper SG, Zhang L, Seers CA, Mitchell HL, Catmull DV, Glew MD, Heath JE, Tan Y, Khan HS, and Reynolds EC
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- Bacterial Proteins genetics, Biological Transport, DNA, Bacterial genetics, Heme metabolism, Porphyromonas gingivalis genetics, Repressor Proteins genetics, Bacterial Proteins metabolism, Biofilms growth & development, DNA, Bacterial metabolism, Hemin metabolism, Porphyromonas gingivalis metabolism, Repressor Proteins metabolism
- Abstract
Porphyromonas gingivalis is a Gram-negative pathogen associated with the biofilm-mediated disease chronic periodontitis. P. gingivalis biofilm formation is dependent on environmental heme for which P. gingivalis has an obligate requirement as it is unable to synthesize protoporphyrin IX de novo, hence P. gingivalis transports iron and heme liberated from the human host. Homeostasis of a variety of transition metal ions is often mediated in Gram-negative bacteria at the transcriptional level by members of the Ferric Uptake Regulator (Fur) superfamily. P. gingivalis has a single predicted Fur superfamily orthologue which we have designated Har (heme associated regulator). Recombinant Har formed dimers in the presence of Zn2+ and bound one hemin molecule per monomer with high affinity (Kd of 0.23 µM). The binding of hemin resulted in conformational changes of Zn(II)Har and residue 97Cys was involved in hemin binding as part of a predicted -97C-98P-99L- hemin binding motif. The expression of 35 genes was down-regulated and 9 up-regulated in a Har mutant (ECR455) relative to wild-type. Twenty six of the down-regulated genes were previously found to be up-regulated in P. gingivalis grown as a biofilm and 11 were up-regulated under hemin limitation. A truncated Zn(II)Har bound the promoter region of dnaA (PGN_0001), one of the up-regulated genes in the ECR455 mutant. This binding decreased as hemin concentration increased which was consistent with gene expression being regulated by hemin availability. ECR455 formed significantly less biofilm than the wild-type and unlike wild-type biofilm formation was independent of hemin availability. P. gingivalis possesses a hemin-binding Fur orthologue that regulates hemin-dependent biofilm formation.
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- 2014
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61. Orthopaedic Quality Reporting: A Comprehensive Review of the Current Landscape and a Roadmap for Progress.
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Bumpass DB, Samora JB, Butler CA, Jevsevar DS, Moffatt-Bruce SD, and Bozic KJ
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- 2014
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62. Increased expression of bronchial epithelial transient receptor potential vanilloid 1 channels in patients with severe asthma.
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McGarvey LP, Butler CA, Stokesberry S, Polley L, McQuaid S, Abdullah H, Ashraf S, McGahon MK, Curtis TM, Arron J, Choy D, Warke TJ, Bradding P, Ennis M, Zholos A, Costello RW, and Heaney LG
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- Adult, Aged, Cells, Cultured, Female, Humans, Hydrogen-Ion Concentration, Immunohistochemistry, Male, Middle Aged, TRPV Cation Channels analysis, TRPV Cation Channels genetics, Asthma metabolism, Bronchi chemistry, TRPV Cation Channels physiology
- Abstract
Background: The airway epithelium is exposed to a range of physical and chemical irritants in the environment that are known to trigger asthma. Transient receptor potential (TRP) cation channels play a central role in sensory responses to noxious physical and chemical stimuli. Recent genetic evidence suggests an involvement of transient receptor potential vanilloid 1 (TRPV1), one member of the vanilloid subfamily of TRP channels, in the pathophysiology of asthma. The functional expression of TRPV1 on airway epithelium has yet to be elucidated., Objective: In this study we examined the molecular, functional, and immunohistochemical expression of TRPV1 in asthmatic and healthy airways., Methods: Bronchial biopsy specimens and bronchial brushings were obtained from healthy volunteers (n = 18), patients with mild-to-moderate asthma (n = 24), and patients with refractory asthma (n = 22). Cultured primary bronchial epithelial cells from patients with mild asthma (n = 4), nonasthmatic coughers (n = 4), and healthy subjects (n = 4) were studied to investigate the functional role of TRPV1., Results: Quantitative immunohistochemistry revealed significantly more TRPV1 expression in asthmatic patients compared with healthy subjects, with the greatest expression in patients with refractory asthma (P = .001). PCR and Western blotting analysis confirmed gene and protein expression of TRPV1 in cultured primary bronchial epithelial cells. Patch-clamp electrophysiology directly confirmed functional TRPV1 expression in all 3 groups. In functional assays the TRPV1 agonist capsaicin induced dose-dependent IL-8 release, which could be blocked by the antagonist capsazepine. Reduction of external pH from 7.4 to 6.4 activated a capsazepine-sensitive outwardly rectifying membrane current., Conclusions: Functional TRPV1 channels are present in the human airway epithelium and overexpressed in the airways of patients with refractory asthma. These channels might represent a novel therapeutic target for the treatment of uncontrolled asthma., (Copyright © 2013 American Academy of Allergy, Asthma & Immunology. Published by Mosby, Inc. All rights reserved.)
- Published
- 2014
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63. Factors influencing acquisition of Burkholderia cepacia complex organisms in patients with cystic fibrosis.
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Ramsay KA, Butler CA, Paynter S, Ware RS, Kidd TJ, Wainwright CE, and Bell SC
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- Adolescent, Adult, Burkholderia Infections microbiology, Burkholderia cepacia complex classification, Burkholderia cepacia complex genetics, Child, Child, Preschool, Cluster Analysis, Female, Genotype, Humans, Incidence, Male, Multilocus Sequence Typing, Risk Factors, Young Adult, Burkholderia Infections epidemiology, Burkholderia cepacia complex isolation & purification, Cystic Fibrosis complications
- Abstract
Burkholderia cepacia complex organisms are important transmissible pathogens found in cystic fibrosis (CF) patients. In recent years, the rates of cross-infection of epidemic strains have declined due to effective infection control efforts. However, cases of sporadic B. cepacia complex infection continue to occur in some centers. The acquisition pathways and clinical outcomes of sporadic B. cepacia complex infection are unclear. We sought to determine the patient clinical characteristics, outcomes, incidence, and genotypic relatedness for all cases of B. cepacia complex infection at two CF centers. We also sought to study the external conditions that influence the acquisition of infection. From 2001 to 2011, 67 individual organisms were cultured from the respiratory samples of 64 patients. Sixty-five percent of the patients were adults, in whom chronic infections were more common (68%) (P = 0.006). The incidence of B. cepacia complex infection increased by a mean of 12% (95% confidence interval [CI], 3 to 23%) per year. The rates of transplantation and death were similar in the incident cases who developed chronic infection compared to those in patients with chronic Pseudomonas aeruginosa infection. Multilocus sequence typing revealed 50 individual strains from 65 isolates. Overall, 85% of the patients were infected with unique strains, suggesting sporadic acquisition of infection. The yearly incidence of nonepidemic B. cepacia complex infection was positively correlated with the amount of rainfall in the two sites examined: subtropical Brisbane (r = 0.65, P = 0.031) and tropical Townsville (r = 0.82, P = 0.002). This study demonstrates that despite strict cohort segregation, new cases of unrelated B. cepacia complex infection continue to occur. These data also support an environmental origin of infection and suggest that climate conditions may be associated with the acquisition of B. cepacia complex infections.
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- 2013
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64. Factors driving physician-hospital alignment in orthopaedic surgery.
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Page AE, Butler CA, and Bozic KJ
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- Databases, Factual, Delivery of Health Care, Integrated economics, Health Care Reform, Humans, MEDLINE, Organizational Culture, Orthopedics economics, Cooperative Behavior, Delivery of Health Care, Integrated organization & administration, Hospital-Physician Relations, Orthopedics organization & administration, Product Line Management
- Abstract
Background: The relationships between physicians and hospitals are viewed as central to the proposition of delivering high-quality health care at a sustainable cost. Over the last two decades, major changes in the scope, breadth, and complexities of these relationships have emerged. Despite understanding the need for physician-hospital alignment, identification and understanding the incentives and drivers of alignment prove challenging., Questions/purposes: Our review identifies the primary drivers of physician alignment with hospitals from both the physician and hospital perspectives. Further, we assess the drivers more specific to motivating orthopaedic surgeons to align with hospitals., Methods: We performed a comprehensive literature review from 1992 to March 2012 to evaluate published studies and opinions on the issues surrounding physician-hospital alignment. Literature searches were performed in both MEDLINE(®) and Health Business™ Elite., Results: Available literature identifies economic and regulatory shifts in health care and cultural factors as primary drivers of physician-hospital alignment. Specific to orthopaedics, factors driving alignment include the profitability of orthopaedic service lines, the expense of implants, and issues surrounding ambulatory surgery centers and other ancillary services., Conclusions: Evolving healthcare delivery and payment reforms promote increased collaboration between physicians and hospitals. While economic incentives and increasing regulatory demands provide the strongest drivers, cultural changes including physician leadership and changing expectations of work-life balance must be considered when pursuing successful alignment models. Physicians and hospitals view each other as critical to achieving lower-cost, higher-quality health care.
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- 2013
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65. New insights into gene-specific management in cystic fibrosis from the 2012 European Cystic Fibrosis Conference.
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Butler CA and Bell SC
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- Humans, Molecular Biology, Cystic Fibrosis genetics, Cystic Fibrosis therapy, Genetic Therapy methods
- Abstract
35th European Cystic Fibrosis Conference The Convention Centre, Dublin, Ireland, 6-9 June 2012 More than 2400 delegates attended the 35th European Cystic Fibrosis Conference held in Dublin between 6 and 9 June 2012. More than 525 abstracts were presented at the conference. There were 30 symposia with four speakers at each, in addition to numerous workshops where researchers had the opportunity to present their work into scientific, clinical and psychological aspects of cystic fibrosis care. Keynote speakers provided state of the art lectures in two plenary sessions. This report highlights two important areas in the field of molecular genetics and the need for new and validated clinical trial end points.
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- 2012
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66. Glucocorticoid receptor β and histone deacetylase 1 and 2 expression in the airways of severe asthma.
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Butler CA, McQuaid S, Taggart CC, Weldon S, Carter R, Skibinski G, Warke TJ, Choy DF, McGarvey LP, Bradding P, Arron JR, and Heaney LG
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- Adult, Blotting, Western, Bronchoscopy, Female, Gene Expression, Histone Deacetylase 1 genetics, Histone Deacetylase 2 genetics, Humans, Immunohistochemistry, Immunoprecipitation, Male, Middle Aged, Real-Time Polymerase Chain Reaction, Receptors, Glucocorticoid genetics, Young Adult, Asthma metabolism, Bronchi metabolism, Histone Deacetylase 1 metabolism, Histone Deacetylase 2 metabolism, RNA, Messenger metabolism, Receptors, Glucocorticoid metabolism, Respiratory Mucosa metabolism
- Abstract
Rationale: Upregulation of glucocorticoid receptor β (GRβ) has been implicated in steroid resistance in severe asthma, although previous studies are conflicting. GRβ has been proposed as a dominant negative isoform of glucocorticoid receptor α (GRα) but it has also been suggested that GRβ can cause steroid resistance via reduced expression of histone deacetylase 2 (HDAC2), a key regulator of steroid responsiveness in the airway., Objectives: To examine GRβ, GRα, HDAC1 and HDAC2 expression at transcript and protein levels in bronchial biopsies from a large series of patients with severe asthma, and to compare the findings with those of patients with mild to moderate asthma and healthy volunteers., Methods: Bronchoscopic study in two UK centres with real-time PCR and immunohistochemistry performed on biopsies, western blotting of bronchial epithelial cells and immunoprecipitation with anti-GRβ antibody., Measurements and Main Results: Protein and mRNA expression for GRα and HDAC2 did not differ between groups. GRβ mRNA was detected in only 13 of 73 samples (seven patients with severe asthma), however immunohistochemistry showed widespread epithelial staining in all groups. Western blotting of bronchial epithelial cells with GRβ antibody detected an additional 'cross-reacting' protein, identified as clathrin. HDAC1 expression was increased in patients with severe asthma compared with healthy volunteers., Conclusions: GRβ mRNA is expressed at low levels in a minority of patients with severe asthma. HDAC1 and HDAC2 expression was not downregulated in severe asthma. These data do not support upregulated GRβ and resultant reduced HDAC expression as the principal mechanism of steroid resistance in severe asthma. Conflicting GRβ literature may be explained in part by clathrin cross-reactivity with commercial antibodies.
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- 2012
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67. The carboxyl-terminal end of Cox1 is required for feedback assembly regulation of Cox1 synthesis in Saccharomyces cerevisiae mitochondria.
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Shingú-Vázquez M, Camacho-Villasana Y, Sandoval-Romero L, Butler CA, Fox TD, and Pérez-Martínez X
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- Amino Acid Sequence, Electron Transport Complex IV genetics, Membrane Proteins genetics, Membrane Proteins metabolism, Mitochondria genetics, Mitochondrial Proteins genetics, Mitochondrial Proteins metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, Sequence Deletion, Transcription Factors genetics, Transcription Factors metabolism, Transcription, Genetic physiology, Electron Transport Complex IV biosynthesis, Mitochondria enzymology, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins biosynthesis
- Abstract
Synthesis of the largest cytochrome c oxidase (CcO) subunit, Cox1, on yeast mitochondrial ribosomes is coupled to assembly of CcO. The translational activator Mss51 is sequestered in early assembly intermediate complexes by an interaction with Cox14 that depends on the presence of newly synthesized Cox1. If CcO assembly is prevented, the level of Mss51 available for translational activation is reduced. We deleted the C-terminal 11 or 15 residues of Cox1 by site-directed mutagenesis of mtDNA. Although these deletions did not prevent respiratory growth of yeast, they eliminated the assembly-feedback control of Cox1 synthesis. Furthermore, these deletions reduced the strength of the Mss51-Cox14 interaction as detected by co-immunoprecipitation, confirming the importance of the Cox1 C-terminal residues for Mss51 sequestration. We surveyed a panel of mutations that block CcO assembly for the strength of their effect on Cox1 synthesis, both by pulse labeling and expression of the ARG8(m) reporter fused to COX1. Deletion of the nuclear gene encoding Cox6, one of the first subunits to be added to assembling CcO, caused the most severe reduction in Cox1 synthesis. Deletion of the C-terminal 15 amino acids of Cox1 increased Cox1 synthesis in the presence of each of these mutations, except pet54. Our data suggest a novel activity of Pet54 required for normal synthesis of Cox1 that is independent of the Cox1 C-terminal end.
- Published
- 2010
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68. Circuit modeling of the transmissivity of stacked two-dimensional metallic meshes.
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Kaipa CS, Yakovlev AB, Medina F, Mesa F, Butler CA, and Hibbins AP
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- Electric Conductivity, Electromagnetic Fields, Equipment Design, Microwaves, Copper, Electronics methods, Models, Theoretical, Optics and Photonics instrumentation
- Abstract
This paper presents a simple analytical circuit-like model to study the transmission of electromagnetic waves through stacked two-dimensional (2-D) conducting meshes. When possible the application of this methodology is very convenient since it provides a straightforward rationale to understand the physical mechanisms behind measured and computed transmission spectra of complex geometries. Also, the disposal of closed-form expressions for the circuit parameters makes the computation effort required by this approach almost negligible. The model is tested by proper comparison with previously obtained numerical and experimental results. The experimental results are explained in terms of the behavior of a finite number of strongly coupled Fabry-Pérot resonators. The number of transmission peaks within a transmission band is equal to the number of resonators. The approximate resonance frequencies of the first and last transmission peaks are obtained from the analysis of an infinite structure of periodically stacked resonators, along with the analytical expressions for the lower and upper limits of the pass-band based on the circuit model.
- Published
- 2010
- Full Text
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69. Dual functions of Mss51 couple synthesis of Cox1 to assembly of cytochrome c oxidase in Saccharomyces cerevisiae mitochondria.
- Author
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Perez-Martinez X, Butler CA, Shingu-Vazquez M, and Fox TD
- Subjects
- 5' Untranslated Regions, Electron Transport Complex IV genetics, Genes, Reporter, Genes, Synthetic, Homeostasis, Membrane Proteins physiology, Mitochondrial Proteins physiology, Protein Biosynthesis physiology, Protein Interaction Mapping, Protein Processing, Post-Translational physiology, Protein Subunits, RNA, Fungal genetics, RNA, Fungal metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Recombinant Fusion Proteins physiology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Transcription Factors genetics, Electron Transport Complex IV biosynthesis, Gene Expression Regulation, Fungal physiology, Mitochondria enzymology, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins biosynthesis, Saccharomyces cerevisiae Proteins physiology, Transcription Factors physiology
- Abstract
Functional interactions of the translational activator Mss51 with both the mitochondrially encoded COX1 mRNA 5'-untranslated region and with newly synthesized unassembled Cox1 protein suggest that it has a key role in coupling Cox1 synthesis with assembly of cytochrome c oxidase. Mss51 is present at levels that are near rate limiting for expression of a reporter gene inserted at COX1 in mitochondrial DNA, and a substantial fraction of Mss51 is associated with Cox1 protein in assembly intermediates. Thus, sequestration of Mss51 in assembly intermediates could limit Cox1 synthesis in wild type, and account for the reduced Cox1 synthesis caused by most yeast mutations that block assembly. Mss51 does not stably interact with newly synthesized Cox1 in a mutant lacking Cox14, suggesting that the failure of nuclear cox14 mutants to decrease Cox1 synthesis, despite their inability to assemble cytochrome c oxidase, is due to a failure to sequester Mss51. The physical interaction between Mss51 and Cox14 is dependent upon Cox1 synthesis, indicating dynamic assembly of early cytochrome c oxidase intermediates nucleated by Cox1. Regulation of COX1 mRNA translation by Mss51 seems to be an example of a homeostatic mechanism in which a positive effector of gene expression interacts with the product it regulates in a posttranslational assembly process.
- Published
- 2009
- Full Text
- View/download PDF
70. Translocation and assembly of mitochondrially coded Saccharomyces cerevisiae cytochrome c oxidase subunit Cox2 by Oxa1 and Yme1 in the absence of Cox18.
- Author
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Fiumera HL, Dunham MJ, Saracco SA, Butler CA, Kelly JA, and Fox TD
- Subjects
- Carrier Proteins genetics, Cell Respiration genetics, Electron Transport Complex IV biosynthesis, Electron Transport Complex IV chemistry, Electron Transport Complex IV genetics, Gene Expression Regulation, Fungal, Gene Silencing, Membrane Proteins genetics, Mitochondrial Membrane Transport Proteins, Mitochondrial Proteins biosynthesis, Mitochondrial Proteins genetics, Nuclear Proteins biosynthesis, Nuclear Proteins genetics, Phenotype, Protein Binding, Protein Folding, Protein Structure, Tertiary, Protein Transport, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Sequence Deletion, ATP-Dependent Proteases metabolism, Electron Transport Complex IV metabolism, Membrane Proteins metabolism, Mitochondria enzymology, Mitochondria genetics, Mitochondrial Proteins metabolism, Nuclear Proteins metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Members of the Oxa1/YidC/Alb3 family of protein translocases are essential for assembly of energy-transducing membrane complexes. In Saccharomyces cerevisiae, Oxa1 and its paralog, Cox18, are required for assembly of Cox2, a mitochondrially encoded subunit of cytochrome c oxidase. Oxa1 is known to be required for cotranslational export of the Cox2 N-terminal domain across the inner mitochondrial membrane, while Cox18 is known to be required for post-translational export of the Cox2 C-tail domain. We find that overexpression of Oxa1 does not compensate for the absence of Cox18 at the level of respiratory growth. However, it does promote some translocation of the Cox2 C-tail domain across the inner membrane and causes increased accumulation of Cox2, which remains unassembled. This result suggests that Cox18 not only translocates the C-tail, but also must deliver it in a distinct state competent for cytochrome oxidase assembly. We identified respiring mutants from a cox18Delta strain overexpressing OXA1, whose respiratory growth requires overexpression of OXA1. The recessive nuclear mutations allow some assembly of Cox2 into cytochrome c oxidase. After failing to identify these mutations by methods based on transformation, we successfully located them to MGR1 and MGR3 by comparative hybridization to whole-genome tiling arrays and microarray-assisted bulk segregant analysis followed by linkage mapping. While Mgr1 and Mgr3 are known to associate with the Yme1 mitochondrial inner membrane i-AAA protease and to participate in membrane protein degradation, their absence does not appear to stabilize Cox2 under these conditions. Instead, Yme1 probably chaperones the folding and/or assembly of Oxa1-exported Cox2 in the absence of Mrg1 or Mgr3, since respiratory growth and cytochrome c oxidase assembly in a cox18 mgr3 double-mutant strain overexpressing OXA1 is YME1 dependent.
- Published
- 2009
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71. Response of Porphyromonas gingivalis to heme limitation in continuous culture.
- Author
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Dashper SG, Ang CS, Veith PD, Mitchell HL, Lo AW, Seers CA, Walsh KA, Slakeski N, Chen D, Lissel JP, Butler CA, O'Brien-Simpson NM, Barr IG, and Reynolds EC
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Chromatography, Liquid, Culture Media pharmacology, Gene Expression Regulation, Bacterial drug effects, Mass Spectrometry, Mutation, Oligonucleotide Array Sequence Analysis, Porphyromonas gingivalis growth & development, Proteomics methods, Transcription, Genetic drug effects, Heme pharmacology, Porphyromonas gingivalis genetics, Porphyromonas gingivalis metabolism
- Abstract
Porphyromonas gingivalis is an anaerobic, asaccharolytic, gram-negative bacterium that has essential requirements for both iron and protoporphyrin IX, which it preferentially obtains as heme. A combination of large-scale quantitative proteomic analysis using stable isotope labeling strategies and mass spectrometry, together with transcriptomic analysis using custom-made DNA microarrays, was used to identify changes in P. gingivalis W50 protein and transcript abundances on changing from heme-excess to heme-limited continuous culture. This approach identified 160 genes and 70 proteins that were differentially regulated by heme availability, with broad agreement between the transcriptomic and proteomic data. A change in abundance of the enzymes of the aspartate and glutamate catabolic pathways was observed with heme limitation, which was reflected in organic acid end product levels of the culture fluid. These results demonstrate a shift from an energy-efficient anaerobic respiration to a less efficient process upon heme limitation. Heme limitation also resulted in an increase in abundance of a protein, PG1374, which we have demonstrated, by insertional inactivation, to have a role in epithelial cell invasion. The greater abundance of a number of transcripts/proteins linked to invasion of host cells, the oxidative stress response, iron/heme transport, and virulence of the bacterium indicates that there is a broad response of P. gingivalis to heme availability.
- Published
- 2009
- Full Text
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72. Chapter 27 An improved method for introducing point mutations into the mitochondrial cytochrome B gene to facilitate studying the role of cytochrome B in the formation of reactive oxygen species.
- Author
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Ding MG, Butler CA, Saracco SA, Fox TD, Godard F, di Rago JP, and Trumpower BL
- Subjects
- 3' Untranslated Regions, Base Sequence, Cyclooxygenase 2 genetics, DNA Primers, Introns, Plasmids, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae metabolism, Cytochromes b metabolism, Mitochondria enzymology, Point Mutation, Reactive Oxygen Species metabolism
- Abstract
Cytochrome b is a pivotal protein subunit of the cytochrome bc(1) complex and forms the ubiquinol oxidation site in the enzyme that is generally thought to be the primary site where electrons are aberrantly diverted from the enzyme, reacting with oxygen to form superoxide anion. In addition, recent studies have shown that mutations in cytochrome b can substantially increase rates of oxygen radical formation by the bc(1) complex. It would, thus, be advantageous to be able to manipulate cytochrome b by mutagenesis of the cytochrome b gene to better understand the role of cytochrome b in oxygen radical formation. Cytochrome b is encoded in the mitochondrial genome in eukaryotic cells, and introduction of point mutations into the gene is generally cumbersome because of the tedious screening process for positive clones. In addition, previously it has been especially difficult to introduce point mutations that lead to loss of respiratory function, as might be expected of mutations that markedly enhance oxygen radical formation. To more efficiently introduce amino acid changes into cytochrome b we have devised a method for mutagenesis of the Saccharomyces cerevisiae mitochondrial cytochrome b gene that uses a recoded ARG8 gene as a "placeholder" for the wild-type b gene. In this method ARG8, a gene that is normally encoded by nuclear DNA, replaces the naturally occurring mitochondrial cytochrome b gene, resulting in ARG8 expressed from the mitochondrial genome (ARG8(m)). Subsequently replacing ARG8(m) with mutated versions of cytochrome b results in arginine auxotrophy. Respiratory-competent cytochrome b mutants can be selected directly by virtue of their ability to restore growth on nonfermentable substrates. If the mutated cytochrome b is nonfunctional, the presence of the COX2 respiratory gene marker on the mitochondrial transforming plasmid enables screening for cytochrome b mutants with a stringent respiratory deficiency (mit(-)).
- Published
- 2009
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73. Introduction of cytochrome b mutations in Saccharomyces cerevisiae by a method that allows selection for both functional and non-functional cytochrome b proteins.
- Author
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Ding MG, Butler CA, Saracco SA, Fox TD, Godard F, di Rago JP, and Trumpower BL
- Subjects
- Culture Media, Electron Transport Complex III metabolism, Electron Transport Complex IV metabolism, Fermentation, Genes, Fungal, Genetic Vectors, Introns genetics, Mitochondria metabolism, Saccharomyces cerevisiae cytology, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae growth & development, Transaminases metabolism, Cytochromes b genetics, Cytochromes b metabolism, Mutagenesis, Mutation genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism
- Abstract
We have previously used inhibitors interacting with the Qn site of the yeast cytochrome bc(1) complex to obtain yeast strains with resistance-conferring mutations in cytochrome b as a means to investigate the effects of amino acid substitutions on Qn site enzymatic activity [M.G. Ding, J.-P. di Rago, B.L. Trumpower, Investigating the Qn site of the cytochrome bc1 complex in Saccharomyces cerevisiae with mutants resistant to ilicicolin H, a novel Qn site inhibitor, J. Biol. Chem. 281 (2006) 36036-36043.]. Although the screening produced various interesting cytochrome b mutations, it depends on the availability of inhibitors and can only reveal a very limited number of mutations. Furthermore, mutations leading to a respiratory deficient phenotype remain undetected. We therefore devised an approach where any type of mutation can be efficiently introduced in the cytochrome b gene. In this method ARG8, a gene that is normally encoded by nuclear DNA, replaces the naturally occurring mitochondrial cytochrome b gene, resulting in ARG8 expressed from the mitochondrial genome (ARG8(m)). Subsequently replacing ARG8(m) with mutated versions of cytochrome b results in arginine auxotrophy. Respiratory competent cytochrome b mutants can be selected directly by virtue of their ability to restore growth on non-fermentable substrates. If the mutated cytochrome b is non-functional, the presence of the COX2 respiratory gene marker on the mitochondrial transforming plasmid enables screening for cytochrome b mutants with a stringent respiratory deficiency (mit(-)). With this system, we created eight different yeast strains containing point mutations at three different codons in cytochrome b affecting center N. In addition, we created three point mutations affecting arginine 79 in center P. This is the first time mutations have been created for three of the loci presented here, and nine of the resulting mutants have never been described before.
- Published
- 2008
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74. Phosphodiesterase 4 inhibitors in chronic obstructive pulmonary disease: a new approach to oral treatment.
- Author
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Currie GP, Butler CA, Anderson WJ, and Skinner C
- Subjects
- Administration, Inhalation, Administration, Oral, Humans, Randomized Controlled Trials as Topic, Phosphodiesterase Inhibitors administration & dosage, Pulmonary Disease, Chronic Obstructive drug therapy, Theophylline administration & dosage
- Abstract
Chronic obstructive pulmonary disease represents a major global health care burden for both primary and secondary care providers and is the most common respiratory condition necessitating hospital admission. Short-acting bronchodilators play a vital role in immediate relief of symptoms, while inhaled long-acting bronchodilators and inhaled corticosteroids are advocated for regular use in individuals with persistent symptoms and exacerbations. Theophylline is a nonspecific phosphodiesterase inhibitor and is usually reserved for patients with ongoing symptoms despite optimum inhaled bronchodilator treatment or when difficulty is encountered with inhaler devices. However, it is often not widely used mainly due to frequency of dose-related adverse effects, numerous drug interactions and narrow therapeutic index. This in turn has lead to the development of more selective phosphodiesterase inhibitors in an attempt to create a drug which patients can use with beneficial effects but without the problems associated with theophylline. Current data do indicate that phosphodiesterase 4 inhibitors confer some benefits in chronic obstructive pulmonary disease when compared to placebo in terms of lung function, quality of life and exacerbations. They are also generally well tolerated. Further studies are required to determine fully their long-term beneficial and adverse effect profiles and ultimately where they might comfortably sit in management algorithms.
- Published
- 2008
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75. Neurogenic inflammation and asthma.
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Butler CA and Heaney LG
- Subjects
- Animals, Asthma drug therapy, Asthma metabolism, Clinical Trials as Topic, Humans, Neurogenic Inflammation drug therapy, Neurogenic Inflammation metabolism, Neuropeptides antagonists & inhibitors, Neuropeptides metabolism, Receptors, Tachykinin antagonists & inhibitors, Receptors, Tachykinin metabolism, Treatment Outcome, Asthma complications, Neurogenic Inflammation complications
- Abstract
Over the past number of decades there has been considerable interest in the role of neurogenic inflammation in asthma with the identification of many biologically active neuropeptides in the lung. Whilst there is convincing evidence of neurogenic inflammation in various animal models of asthma, the evidence in humans is less clear and replicating the experimental approaches in humans has proven difficult with different studies producing conflicting results. In terms of human studies, research has focused on whether pro-inflammatory neuropeptides are elevated in the asthmatic airway, and if so, what their functional effects are. There have also been studies to assess the efficacy of tachykinin receptor antagonists in improving indices of asthma control. Information to date would suggest that neuropeptides are present in human airways and are possibly upregulated in asthma, but this effect does not appear to be specific and may occur in other inflammatory airways conditions (chronic obstructive pulmonary disease (COPD) and smoking). At present there is insufficient evidence to suggest that tachykinin receptor antagonists confer any additional benefit over inhaled corticosteroid regimes for asthmatic patients.
- Published
- 2007
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76. Translation initiation in Saccharomyces cerevisiae mitochondria: functional interactions among mitochondrial ribosomal protein Rsm28p, initiation factor 2, methionyl-tRNA-formyltransferase and novel protein Rmd9p.
- Author
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Williams EH, Butler CA, Bonnefoy N, and Fox TD
- Subjects
- Cell Respiration genetics, Mitochondria metabolism, Mitochondrial Proteins, Mutagenesis, Ribosomal Proteins, Saccharomyces cerevisiae physiology, Saccharomyces cerevisiae Proteins genetics, Eukaryotic Initiation Factors metabolism, Hydroxymethyl and Formyl Transferases metabolism, Membrane Proteins metabolism, Mitochondria physiology, Protein Biosynthesis physiology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Rsm28p is a dispensable component of the mitochondrial ribosomal small subunit in Saccharomyces cerevisiae that is not related to known proteins found in bacteria. It was identified as a dominant suppressor of certain mitochondrial mutations that reduced translation of the COX2 mRNA. To explore further the function of Rsm28p, we isolated mutations in other genes that caused a synthetic respiratory defective phenotype together with rsm28Delta. These mutations identified three nuclear genes: IFM1, which encodes the mitochondrial translation initiation factor 2 (IF2); FMT1, which encodes the methionyl-tRNA-formyltransferase; and RMD9, a gene of unknown function. The observed genetic interactions strongly suggest that the ribosomal protein Rsm28p and Ifm1p (IF2) have similar and partially overlapping functions in yeast mitochondrial translation initiation. Rmd9p, bearing a TAP-tag, was localized to mitochondria and exhibited roughly equal distribution in soluble and membrane-bound fractions. A small fraction of the Rmd9-TAP sedimented together with presumed monosomes, but not with either individual ribosomal subunit. Thus, Rmd9 is not a ribosomal protein, but may be a novel factor associated with initiating monosomes. The poorly respiring rsm28Delta, rmd9-V363I double mutant did not have a strong translation-defective phenotype, suggesting that Rmd9p may function upstream of translation initiation, perhaps at the level of localization of mitochondrially coded mRNAs.
- Published
- 2007
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77. Motion sickness during fore-and-aft oscillation: effect of the visual scene.
- Author
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Butler CA and Griffin MJ
- Subjects
- Adolescent, Adult, Disease Susceptibility, Humans, Male, Oscillometry, Physical Phenomena, Physics, Proportional Hazards Models, Severity of Illness Index, Acceleration adverse effects, Motion Sickness etiology, Photic Stimulation adverse effects
- Abstract
Background: Repetitive braking and acceleration can cause carsickness, with the extent of sickness depending on the forward view outside the car., Hypothesis: It was hypothesized that the visual scene would influence motion sickness caused by low-frequency, low-magnitude fore-and-aft oscillation in the laboratory., Method: There were 120 seated male subjects who were exposed to 30 min of 0.1-Hz fore-and-aft oscillation at an acceleration magnitude of 0.89 m x s(-2) rms (a displacement of +/- 3.18 m). Subjects sat in a cabin with one of six scenes: 1) an internal view of two-dimensional black shapes on a white background; 2) an external view of the same two-dimensional shapes; 3) an external view of six horizontal black lines; 4) a 'real' three-dimensional external view; 5) no view (blindfolded); or 6) an internal collimated view of the two-dimensional shapes. Due to practical constraints, only conditions 1, 2, and 6 were tested in a balanced order. Ratings of motion sickness were obtained at 1-min intervals., Results: Each of the six conditions caused motion sickness, with mean illness ratings that increased similarly over time regardless of viewing condition. The symptoms did not differ significantly between conditions and there was no difference in the risk of reaching an illness rating of 2, 'mild symptoms,' between the six viewing conditions., Discussion and Conclusions: With a larger number of subjects, a small mean effect of vision might be found with motions having similar frequencies or similar magnitudes to the conditions investigated here. Nevertheless, compared with the large effects of vision with some motions, it is concluded that the visual scene has little effect on sickness caused by pure fore-and-aft oscillation at a frequency of 0.1 Hz and an acceleration magnitude of 0.89 m x s(-2) rms.
- Published
- 2006
78. The effect of gamma irradiation on anterior cruciate ligament allograft biomechanical and biochemical properties in the caprine model at time zero and at 6 months after surgery.
- Author
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Schwartz HE, Matava MJ, Proch FS, Butler CA, Ratcliffe A, Levy M, and Butler DL
- Subjects
- Animals, Female, Glycosaminoglycans analysis, Goats, Hydroxyproline analysis, Models, Animal, Patellar Ligament chemistry, Patellar Ligament physiology, Proteoglycans analysis, Random Allocation, Sterilization methods, Tensile Strength, Time Factors, Transplantation, Homologous, Weight-Bearing, Anterior Cruciate Ligament surgery, Bone-Patellar Tendon-Bone Grafting, Gamma Rays, Patellar Ligament radiation effects
- Abstract
Background: High levels of gamma irradiation are required to eliminate the risk of bacterial and viral transmission during implantation of musculoskeletal allografts. The effects of high levels of gamma irradiation on anterior cruciate ligament allograft biomechanics are still not known., Hypothesis: High-dose gamma irradiation (4 Mrad) adversely affects anterior cruciate ligament allograft biomechanics at surgery and at 6 months after surgery and affects biochemistry at 6 months., Study Design: Controlled laboratory study., Methods: Bilateral anterior cruciate ligament reconstructions were performed in 18 adult goats, with one knee receiving an irradiated patellar tendon allograft (4 Mrad) and the other receiving a frozen control allograft (0 Mrad). In 6 recipients (time zero group), graft pairs were tested immediately after sacrifice, and load relaxation of the femur-allograft-tibia preparation was measured during cyclic anterior displacement. Twelve recipients received bilateral anterior cruciate ligament reconstructions, staged 2 months apart, and were sacrificed a mean of 6 months postoperatively. Load relaxation and tensile failure testing were performed, followed by allograft biochemistry assessment., Results: At time zero, irradiated grafts showed less load relaxation than did contralateral controls, but by 6 months, the trend had reversed because of decreases in control graft relaxation, with no changes in irradiated graft relaxation. By 6 months, irradiated grafts showed lower stiffness and maximum force compared to controls but no differences in modulus, maximum stress, or biochemistry., Conclusion: High levels of gamma irradiation affect anterior cruciate ligament allograft subfailure viscoelastic and structural properties but not material or biochemical properties over time., Clinical Relevance: Although high levels of gamma irradiation may inactivate infectious agents, this treatment is not a feasible clinical option because of altered allograft biomechanics.
- Published
- 2006
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79. Variation in lung cancer survival rates between countries: do differences in data reporting contribute?
- Author
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Butler CA, Darragh KM, Currie GP, and Anderson WJ
- Subjects
- Data Interpretation, Statistical, Europe epidemiology, Humans, Research Design, Survival Rate, United Kingdom epidemiology, United States epidemiology, Data Collection, Lung Neoplasms mortality
- Abstract
Background: Mortality rates from lung cancer are known to vary considerably between countries. Differences in patients, disease, investigation and treatment are thought to account for some survival shortfalls but it is not known whether differences in collection or processing of data also contribute., Methodology: We searched recognised sources where information regarding mortality rates have been published for the United Kingdom, Europe and United States (US). Data regarding patient selection, demographics and mortality rates were extracted., Results: Published international 5-year survival for patients with lung cancer varies from 5% to 16%. The survival figures quoted in the literature are based on data which varies widely in its collection and statistical analysis and this information is not always in the public domain. Data from the US suggests an overall 5-year survival rate of up to 16% although this figure covers only a quarter of the general population and excludes patients without histological confirmation. Many European countries report higher mortality rates although in most, data includes patients without proven histology. European datasets have variable population coverage., Conclusion: Selective data collection and variable population coverage may account for some of the differences in lung cancer survival between countries. More transparent description of data collection and analysis would be helpful but ideally a uniform method of reporting data is required in order to make valid comparisons in mortality rates.
- Published
- 2006
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- View/download PDF
80. Do differences in data reporting contribute to variation in lung cancer survival?
- Author
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Butler CA, Currie GP, and Anderson WJ
- Subjects
- Humans, SEER Program, United Kingdom epidemiology, United States epidemiology, Lung Neoplasms diagnosis, Lung Neoplasms mortality, Research Design standards
- Published
- 2005
- Full Text
- View/download PDF
81. A novel Porphyromonas gingivalis FeoB plays a role in manganese accumulation.
- Author
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Dashper SG, Butler CA, Lissel JP, Paolini RA, Hoffmann B, Veith PD, O'Brien-Simpson NM, Snelgrove SL, Tsiros JT, and Reynolds EC
- Subjects
- Amino Acid Sequence, Animals, Bacterial Proteins, Biological Transport, Culture Media metabolism, DNA chemistry, Genes, Bacterial, Genome, Bacterial, Hydrogen Peroxide pharmacology, Ions metabolism, Iron metabolism, Kinetics, Mass Spectrometry, Mice, Mice, Inbred BALB C, Molecular Sequence Data, Mutation, Operon, Oxidative Stress, Oxygen metabolism, Protein Binding, Protein Structure, Tertiary, Pseudomonas Infections metabolism, RNA chemistry, Reverse Transcriptase Polymerase Chain Reaction, Sequence Homology, Amino Acid, Time Factors, Virulence, Cation Transport Proteins genetics, Cation Transport Proteins physiology, Escherichia coli Proteins genetics, Escherichia coli Proteins physiology, Manganese metabolism, Porphyromonas gingivalis genetics, Porphyromonas gingivalis metabolism
- Abstract
FeoB is an atypical transporter that has been shown to exclusively mediate ferrous ion transport in some bacteria. Unusually the genome of the periodontal pathogen Porphyromonas gingivalis has two genes (feoB1 and feoB2) encoding FeoB homologs, both of which are expressed in bicistronic operons. Kinetic analysis of ferrous ion transport by P. gingivalis W50 revealed the presence of a single, high affinity system with a K(t) of 0.31 microM. FeoB1 was found to be solely responsible for this transport as energized cells of the isogenic FeoB1 mutant (W50FB1) did not transport radiolabeled iron, while the isogenic FeoB2 mutant (W50FB2) transported radiolabeled iron at a rate similar to wild type. This was reflected in the iron content of W50FB1 grown in iron excess conditions which was approximately half that of the wild type and W50FB2. The W50FB1 mutant had increased sensitivity to both oxygen and hydrogen peroxide and was avirulent in an animal model of infection whereas W50FB2 exhibited the same virulence as the wild type. Analysis of manganous ion uptake using inductively coupled plasma-mass spectrometry revealed a greater than 3-fold decrease in intracellular manganese accumulation in W50FB2 which was also unable to grow in manganese-limited media. The protein co-expressed with FeoB2 appears to be a novel FeoA-MntR fusion protein that exhibits homology to a manganese-responsive, DNA-binding metalloregulatory protein. These results indicate that FeoB2 is not involved in iron transport but plays a novel role in manganese transport.
- Published
- 2005
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82. Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs.
- Author
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Williams EH, Bsat N, Bonnefoy N, Butler CA, and Fox TD
- Subjects
- Alleles, Electron Transport Complex IV metabolism, Mitochondrial Proteins genetics, Mutation, Protein Sorting Signals genetics, Protein Subunits genetics, RNA, Messenger metabolism, Ribosomal Proteins genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins genetics, DNA, Mitochondrial, Electron Transport Complex IV genetics, Mitochondrial Proteins metabolism, Protein Biosynthesis, Protein Subunits metabolism, Ribosomal Proteins metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Mutations affecting the RNA sequence of the first 10 codons of the Saccharomyces cerevisiae mitochondrial gene COX2 strongly reduce translation of the mRNA, which encodes the precursor of cytochrome c oxidase subunit II. A dominant chromosomal mutation that suppresses these defects is an internal in-frame deletion of 67 codons from the gene YDR494w. Wild-type YDR494w encodes a 361-residue polypeptide with no similarity to proteins of known function. The epitope-tagged product of this gene, now named RSM28, is both peripherally associated with the inner surface of the inner mitochondrial membrane and soluble in the matrix. Epitope-tagged Rsm28p from Triton X-100-solubilized mitochondria sedimented with the small subunit of mitochondrial ribosomes in a sucrose gradient containing 500 mM NH4Cl. Complete deletion of RSM28 caused only a modest decrease in growth on nonfermentable carbon sources in otherwise wild-type strains and enhanced the respiratory defect of the suppressible cox2 mutations. The rsm28 null mutation also reduced translation of an ARG8m reporter sequence inserted at the COX1, COX2, and COX3 mitochondrial loci. We tested the ability of RSM28-1 to suppress a variety of cox2 and cox3 mutations and found that initiation codon mutations in both genes were suppressed. We conclude that Rsm28p is a dispensable small-subunit mitochondrial ribosomal protein previously undetected in systematic investigations of these ribosomes, with a positive role in translation of several mitochondrial mRNAs.
- Published
- 2005
- Full Text
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83. GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5.
- Author
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Garg V, Kathiriya IS, Barnes R, Schluterman MK, King IN, Butler CA, Rothrock CR, Eapen RS, Hirayama-Yamada K, Joo K, Matsuoka R, Cohen JC, and Srivastava D
- Subjects
- Animals, Binding Sites, COS Cells, Chromosome Mapping, Chromosomes, Human, Pair 8 genetics, DNA genetics, DNA metabolism, DNA Mutational Analysis, DNA-Binding Proteins chemistry, Electrophoretic Mobility Shift Assay, Female, Frameshift Mutation genetics, GATA4 Transcription Factor, HeLa Cells, Heart Defects, Congenital physiopathology, Homeobox Protein Nkx-2.5, Homeodomain Proteins metabolism, Humans, Male, Mice, Pedigree, Precipitin Tests, Protein Binding, T-Box Domain Proteins chemistry, T-Box Domain Proteins genetics, Transcription Factors chemistry, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Heart Defects, Congenital genetics, Mutation genetics, T-Box Domain Proteins metabolism, Transcription Factors genetics, Transcription Factors metabolism, Xenopus Proteins
- Abstract
Congenital heart defects (CHDs) are the most common developmental anomaly and are the leading non-infectious cause of mortality in newborns. Only one causative gene, NKX2-5, has been identified through genetic linkage analysis of pedigrees with non-syndromic CHDs. Here, we show that isolated cardiac septal defects in a large pedigree were linked to chromosome 8p22-23. A heterozygous G296S missense mutation of GATA4, a transcription factor essential for heart formation, was found in all available affected family members but not in any control individuals. This mutation resulted in diminished DNA-binding affinity and transcriptional activity of Gata4. Furthermore, the Gata4 mutation abrogated a physical interaction between Gata4 and TBX5, a T-box protein responsible for a subset of syndromic cardiac septal defects. Conversely, interaction of Gata4 and TBX5 was disrupted by specific human TBX5 missense mutations that cause similar cardiac septal defects. In a second family, we identified a frame-shift mutation of GATA4 (E359del) that was transcriptionally inactive and segregated with cardiac septal defects. These results implicate GATA4 as a genetic cause of human cardiac septal defects, perhaps through its interaction with TBX5.
- Published
- 2003
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84. Interactions among COX1, COX2, and COX3 mRNA-specific translational activator proteins on the inner surface of the mitochondrial inner membrane of Saccharomyces cerevisiae.
- Author
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Naithani S, Saracco SA, Butler CA, and Fox TD
- Subjects
- Cyclooxygenase 1, Cyclooxygenase 2, Membrane Proteins metabolism, Mitochondria metabolism, Mitochondrial Proteins, Nuclear Proteins metabolism, Peptide Initiation Factors, Precipitin Tests, Saccharomyces cerevisiae metabolism, Transcription Factors metabolism, Two-Hybrid System Techniques, Isoenzymes metabolism, Mitochondria enzymology, Prostaglandin-Endoperoxide Synthases metabolism, RNA, Messenger metabolism, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins
- Abstract
The core of the cytochrome c oxidase complex is composed of its three largest subunits, Cox1p, Cox2p, and Cox3p, which are encoded in mitochondrial DNA of Saccharomyces cerevisiae and inserted into the inner membrane from the inside. Mitochondrial translation of the COX1, COX2, and COX3 mRNAs is activated mRNA specifically by the nuclearly coded proteins Pet309p, Pet111p, and the concerted action of Pet54p, Pet122p, and Pet494p, respectively. Because the translational activators recognize sites in the 5'-untranslated leaders of these mRNAs and because untranslated mRNA sequences contain information for targeting their protein products, the activators are likely to play a role in localizing translation. Herein, we report physical associations among the mRNA-specific translational activator proteins, located on the matrix side of the inner membrane. These interactions, detected by coimmune precipitation and by two-hybrid experiments, suggest that the translational activator proteins could be organized on the surface of the inner membrane such that synthesis of Cox1p, Cox2p, and Cox3p would be colocalized in a way that facilitates assembly of the core of the cytochrome c oxidase complex. In addition, we found interactions between Nam1p/Mtf2p and the translational activators, suggesting an organized delivery of mitochondrial mRNAs to the translation system.
- Published
- 2003
- Full Text
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85. A splice variant of estrogen receptor beta missing exon 3 displays altered subnuclear localization and capacity for transcriptional activation.
- Author
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Price RH Jr, Butler CA, Webb P, Uht R, Kushner P, and Handa RJ
- Subjects
- Animals, CHO Cells, COS Cells, CREB-Binding Protein, Cricetinae, Estrogen Receptor beta, Humans, Nuclear Proteins analysis, Nuclear Receptor Coactivator 2, Promoter Regions, Genetic, Protein Conformation, Protein Isoforms, Receptors, Estrogen drug effects, Receptors, Estrogen physiology, Trans-Activators analysis, Transcription Factors analysis, Cell Nucleus chemistry, Exons, Receptors, Estrogen analysis, Transcriptional Activation
- Abstract
There are two separate estrogen receptors (ERs), ERalpha and ERbeta. The ERbeta gene is variably spliced, and in some cases variant expression is high. Besides the full-length ERbeta (equivalent to ERbeta1), splice variants can encode proteins bearing an insert within the ligand-binding domain (beta2), a deletion of exon 3 (ERbeta1delta3) disrupting the DNA-binding domain, or both (ERbeta2delta3). Here we examine the intracellular localization and transcriptional properties of each of the ERbeta splice variants heterologously expressed in cultured cells. In accordance with ERalpha, ERbeta1 and ERbeta2 are both distributed in a reticular pattern within the nucleus after exposure to ligand. In contrast, ERbeta1delta3 and ERbeta2delta3 localize to discrete spots within the nucleus in the presence of ER agonists. In the presence of ER antagonists, the delta3 variants are distributed diffusely within the nucleus. We also show that the spots are stable nuclear structures to which the delta3 variants localize in a ligand-dependent manner. Coactivator proteins of ER colocalize with delta3 variants in the spots in the presence of agonists. The delta3 variants of ERbeta can activate luciferase reporter constructs containing an activator protein complex-1 site, but not an estrogen response element (ERE). These data suggest that without an intact DNA-binding domain, ERbeta is functionally altered, allowing localization to discrete nuclear spots and activation from activator protein-1-containing reporter genes.
- Published
- 2001
- Full Text
- View/download PDF
86. Pet111p, an inner membrane-bound translational activator that limits expression of the Saccharomyces cerevisiae mitochondrial gene COX2.
- Author
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Green-Willms NS, Butler CA, Dunstan HM, and Fox TD
- Subjects
- Gene Dosage, Membrane Proteins, Mitochondrial Proteins, Nuclear Proteins genetics, Peptide Initiation Factors, RNA, Messenger analysis, Electron Transport Complex IV genetics, Mitochondria metabolism, Nuclear Proteins physiology, Plant Proteins genetics, Protein Biosynthesis, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
The protein specified by the Saccharomyces cerevisiae nuclear gene PET111 specifically activates translation of the mitochondrially coded mRNA for cytochrome c oxidase subunit II (Cox2p). We found Pet111p specifically in mitochondria of both wild-type cells and cells expressing a chromosomal gene for a functional epitope-tagged form of Pet111p. Pet111p was associated with mitochondrial membranes and was highly resistant to extraction with alkaline carbonate. Pet111p was protected from proteolytic digestion by the mitochondrial inner membrane. Thus, it is exposed only on the matrix side, where it could participate directly in organellar translation and localize Cox2p synthesis by virtue of its functional interaction with the COX2 mRNA 5'-untranslated leader. We also found that Pet111p is present at levels limiting the synthesis of Cox2p by examining the effect of altered PET111 gene dosage in the nucleus on expression of a reporter gene, cox2::ARG8(m), that was inserted into mitochondrial DNA. The level of the reporter protein, Arg8p, was one-half that of wild type in a diploid strain heterozygous for a pet111 deletion mutation, whereas it was increased 2.8-fold in a strain bearing extra copies of PET111 on a high-copy plasmid. Thus, Pet111p could play dual roles in both membrane localization and regulation of Cox2p synthesis within mitochondria.
- Published
- 2001
- Full Text
- View/download PDF
87. Analysis of microsatellite mutations in the mitochondrial DNA of Saccharomyces cerevisiae.
- Author
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Sia EA, Butler CA, Dominska M, Greenwell P, Fox TD, and Petes TD
- Subjects
- DNA, Fungal genetics, DNA-Binding Proteins, Dinucleotide Repeats genetics, Fungal Proteins genetics, Genes, Reporter, Mitochondrial Proteins, Saccharomyces cerevisiae Proteins, DNA Mutational Analysis, DNA, Mitochondrial genetics, Microsatellite Repeats genetics, Saccharomyces cerevisiae genetics
- Abstract
In the nuclear genome of Saccharomyces cerevisiae, simple, repetitive DNA sequences (microsatellites) mutate at rates much higher than nonrepetitive sequences. Most of these mutations are deletions or additions of repeat units. The yeast mitochondrial genome also contains many microsatellites. To examine the stability of these sequences, we constructed a reporter gene (arg8(m)) containing out-of-frame insertions of either poly(AT) or poly(GT) tracts within the coding sequence. Yeast strains with this reporter gene inserted within the mitochondrial genome were constructed. Using these strains, we showed that poly(GT) tracts were considerably less stable than poly(AT) tracts and that alterations usually involved deletions rather than additions of repeat units. In contrast, in the nuclear genome, poly(GT) and poly(AT) tracts had similar stabilities, and alterations usually involved additions rather than deletions. Poly(GT) tracts were more stable in the mitochondria of diploid cells than in haploids. In addition, an msh1 mutation destabilized poly(GT) tracts in the mitochondrial genome.
- Published
- 2000
- Full Text
- View/download PDF
88. Patella fracture and proximal patellar tendon rupture following arthroscopic anterior cruciate ligament reconstruction.
- Author
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Miller MD, Nichols T, and Butler CA
- Subjects
- Adult, Anterior Cruciate Ligament pathology, Anterior Cruciate Ligament Injuries, Fractures, Bone diagnosis, Fractures, Bone surgery, Humans, Internal Fixators, Male, Patella diagnostic imaging, Patella pathology, Postoperative Complications, Radiography, Reoperation, Tendons diagnostic imaging, Tendons pathology, Anterior Cruciate Ligament surgery, Arthroscopy, Fractures, Bone etiology, Patella injuries, Plastic Surgery Procedures methods, Tendon Injuries
- Abstract
The central one-third bone-patella tendon-bone graft is a popular choice for arthroscopic anterior cruciate ligament reconstruction. Complications following graft harvesting are unusual, but several reports have been published. We report an unusual case involving a simultaneous patella fracture and patellar tendon rupture that occurred 6 weeks postoperatively.
- Published
- 1999
- Full Text
- View/download PDF
89. Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation.
- Author
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Steele DF, Butler CA, and Fox TD
- Subjects
- Arginine biosynthesis, DNA, Fungal metabolism, Electron Transport Complex IV genetics, Glucose pharmacology, Membrane Proteins genetics, Mitochondria metabolism, Molecular Sequence Data, RNA, Fungal metabolism, Saccharomyces cerevisiae Proteins, Transaminases metabolism, Cell Nucleus metabolism, DNA, Mitochondrial metabolism, Electron Transport Complex IV biosynthesis, Gene Expression Regulation, Fungal drug effects, Genes, Fungal, Genes, Synthetic, Membrane Proteins biosynthesis, Protein Biosynthesis, RNA, Messenger metabolism, Saccharomyces cerevisiae genetics, Transaminases biosynthesis
- Abstract
Genetic code differences prevent expression of nuclear genes within Saccharomyces cerevisiae mitochondria. To bridge this gap a synthetic gene, ARG8m, designed to specify an arginine biosynthetic enzyme when expressed inside mitochondria, has been inserted into yeast mtDNA in place of the COX3 structural gene. This mitochondrial cox3::ARG8m gene fully complements a nuclear arg8 deletion at the level of cell growth, and it is dependent for expression upon nuclear genes that encode subunits of the COX3 mRNA-specific translational activator. Thus, cox3::ARG8m serves as a mitochondrial reporter gene. Measurement of cox3::ARG8m expression at the levels of steady-state protein and enzymatic activity reveals that glucose repression operates within mitochondria. The levels of this reporter vary among strains whose nuclear genotypes lead to under- and overexpression of translational activator subunits, in particular Pet494p, indicating that mRNA-specific translational activation is a rate-limiting step in this organellar system. Whereas the steady-state level of cox3::ARG8m mRNA was also glucose repressed in an otherwise wild-type strain, absence of translational activation led to essentially repressed mRNA levels even under derepressing growth conditions. Thus, the mRNA is stabilized by translational activation, and variation in its level may be largely due to modulation of translation.
- Published
- 1996
- Full Text
- View/download PDF
90. Regulation of exoprotein expression in Staphylococcus aureus by a locus (sar) distinct from agr.
- Author
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Cheung AL, Koomey JM, Butler CA, Projan SJ, and Fischetti VA
- Subjects
- DNA Transposable Elements, Extracellular Space metabolism, Mutagenesis, Insertional, Phenotype, Plasmids, Restriction Mapping, Staphylococcus aureus pathogenicity, Transduction, Genetic, Bacterial Proteins metabolism, Genes, Bacterial, Staphylococcus aureus genetics
- Abstract
A single insertion of transposon Tn917LTV1 into the chromosome of a Staphylococcus aureus clinical isolate, strain DB, resulted in a pleiotropic effect on the expression of a number of extracellular and cell-wall-associated proteins. Detailed comparison of phenotypes associated with the mutant, 11D2, and the parent, DB, indicated that the chromosomal locus inactivated as a result of transposon mutagenesis differs from the S. aureus accessory gene regulator locus (agr). In particular, the expression of alpha-hemolysin, which is not detectable in Agr- mutants, was enhanced in mutant 11D2, while it remained at a low level in strain DB. Likewise, protease activity was significantly enhanced in 11D2 compared with DB. In addition, most of the cell-bound proteins were expressed at lower levels in the mutant than the parent strain. This pattern is contrary to that found in switching from Agr+ to Agr- phenotypes. Southern blot hybridization with an agr probe indicated that the inactivated chromosomal locus is distinct from agr. Transduction experiments demonstrated that the phenotypes associated with mutant 11D2 could be transferred to the parental strain DB as well as to RN450, an S. aureus strain with a genetic background similar to strain 8325-4. This locus on the S. aureus chromosome, possibly regulatory in nature, has been designated sar for staphylococcal accessory regulator.
- Published
- 1992
- Full Text
- View/download PDF
91. Molecular characterization of the 28- and 31-kilodalton subunits of the Legionella pneumophila major outer membrane protein.
- Author
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Hoffman PS, Seyer JH, and Butler CA
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Northern, Blotting, Southern, Molecular Sequence Data, Nucleic Acid Hybridization, Peptide Mapping, Peptidoglycan chemistry, Porins, Bacterial Outer Membrane Proteins chemistry, Legionella pneumophila chemistry, Peptide Fragments chemistry
- Abstract
The major outer membrane protein of Legionella pneumophila exhibits an apparent molecular mass of 100 kDa. Previous studies revealed the oligomer to be composed of 28- and 31-kDa subunits; the latter subunit is covalently bound to peptidoglycan. These proteins exhibit cross-reactivity with polyclonal anti-31-kDa protein serum. In this study, we present evidence to confirm that the 31-kDa subunit is a 28-kDa subunit containing a bound fragment of peptidoglycan. Peptide maps of purified proteins were generated following cyanogen bromide cleavage or proteolysis with staphylococcal V8 protease. A comparison of the banding patterns resulting from sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) revealed a common pattern. Selected peptide fragments were sequenced on a gas phase microsequencer, and the sequence was compared with the sequence obtained for the 28-kDa protein. While the amino terminus of the 31-kDa protein was blocked, peptide fragments generated by cyanogen bromide treatment exhibited a sequence identical to that of the amino terminus of the 28-kDa protein, but beginning at amino acid four (glycine), which is preceded by methionine at the third position. This sequence, (Gly-Thr-Met)-Gly-Pro-Val-Trp-Thr-Pro-Gly-Asn ... , confirms that these proteins have a common amino terminus. An oligonucleotide synthesized from the codons of the common N-terminal amino acid sequence was used to establish by Southern and Northern (RNA) blot analyses that a single gene coded for both proteins. With regard to the putative porin structure, we have identified two major bands at 70 kDa and at approximately 120 kDa by nonreducing SDS-PAGE. The former may represent the typical trimeric motif, while the latter may represent either a double trimer or an aggregate. Analysis of these two forms by two-dimensional SDS-PAGE (first dimensions, nonreducing; second dimensions, reducing) established that both were composed of 31- and 28-kDa subunits cross-linked via interchain disulfide bonds. These studies confirm that the novel L. pneumophila major outer protein is covalently bound to peptidoglycan via a modified 28-kDa subunit (31-kDa anchor protein) and cross-linked to other 28-kDa subunits via interchain disulfide bonds.
- Published
- 1992
- Full Text
- View/download PDF
92. High-frequency mobilization of broad-host-range plasmids into Neisseria gonorrhoeae requires methylation in the donor.
- Author
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Butler CA and Gotschlich EC
- Subjects
- DNA Restriction Enzymes metabolism, DNA, Bacterial chemistry, DNA, Bacterial genetics, Methylation, Conjugation, Genetic, Neisseria gonorrhoeae genetics, Plasmids
- Abstract
Antibiotic resistance in Neisseria gonorrhoeae has been associated with the acquisition of R plasmids from heterologous organisms. The broad-host-range plasmids of incompatibility groups P (IncP) and Q (IncQ) have played a role in this genetic exchange in nature. We have utilized derivatives of RSF1010 (IncQ) and RP1 (IncP) to demonstrate that the plethora of restriction barriers associated with the gonococci markedly reduces mobilization of plasmids from Escherichia coli into strains F62 and PGH 3-2. Partially purified restriction endonucleases from these gonococcal strains can digest RSF1010 in vitro. Protection of RSF1010-km from digestion by gonococcal enzymes purified from strain F62 is observed when the plasmid is isolated from E. coli containing a coresident plasmid, pCAL7. Plasmid pCAL7 produces a 5'-MECG-3' cytosine methylase (M.SssI). The M.SssI methylase only partially protects RSF1010-km from digestion by restriction enzymes from strain PGH 3-2. Total protection of RSF1010-km from PGH 3-2 restriction requires both pCAL7 and a second coresident plasmid, pFnuDI, which produces a 5'-GGMECC-3' cytosine methylase. When both F62 and PGH 3-2 are utilized as recipients in heterospecific matings with E. coli, mobilization of RSF1010 from strains containing the appropriate methylases into the gonococci occurs at frequencies 4 orders of magnitude higher than from strains without the methylases. Thus, protection of RSF1010 from gonococcal restriction enzymes in vitro correlates with an increase in the conjugal frequency. These data indicate that restriction is a major barrier against efficient conjugal transfer between N. gonorrhoeae and heterologous hosts.
- Published
- 1991
- Full Text
- View/download PDF
93. Legionella pneumophila htpAB heat shock operon: nucleotide sequence and expression of the 60-kilodalton antigen in L. pneumophila-infected HeLa cells.
- Author
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Hoffman PS, Houston L, and Butler CA
- Subjects
- Amino Acid Sequence, Antigens, Bacterial biosynthesis, Antigens, Bacterial immunology, Antigens, Surface biosynthesis, Antigens, Surface genetics, Antigens, Surface immunology, Base Sequence, Fluorescent Antibody Technique, HeLa Cells, Heat-Shock Proteins biosynthesis, Heat-Shock Proteins immunology, Heat-Shock Proteins isolation & purification, Humans, Lymphocyte Activation immunology, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Antigens, Bacterial genetics, DNA, Bacterial, Heat-Shock Proteins genetics, Legionella genetics, Operon
- Abstract
A 60-kilodalton (kDa) immunodominant antigen of Legionella pneumophila is a heat shock protein (HSP) of the GroEL class of HSPs. The gene (htpB) coding the 60-kDa protein was localized to a 3.2-kilobase DNA fragment of L. pneumophila cloned into pUC19 (pSH16) (P. S. Hoffman, C. A. Butler, and F. D. Quinn, Infect. Immun. 57:1731-1739, 1989). The nucleotide sequence of the DNA fragment cloned into M13 confirmed two open reading frames, htpA and htpB, that code for proteins of 96 and 548 amino acids, respectively. A consensus heat shock promoter sequence upstream of the start of htpA was identified, and no obvious promoter sequences were detected upstream of htpB. Amino acid sequence comparison studies revealed that the L. pneumophila HtpB protein exhibited 76% homology with the 65-kDa protein of Mycobacterium tuberculosis and 85% homology with both GroEL of Escherichia coli and HtpB of Coxiella burnetii. A comparison of the amino acid sequences among these proteins revealed several regions of nearly absolute sequence conservation, with the variable regions occurring in common areas. The purified L. pneumophila 60-kDa protein was antigenic for human T lymphocytes. Indirect fluorescent antibody studies indicated that the 60-kDa protein may be located in the periplasm or expressed on the surface by intracellular bacteria, suggesting that a stress-related mechanism may be involved in the expression of this immunodominant antigen.
- Published
- 1990
- Full Text
- View/download PDF
94. Characterization of a major 31-kilodalton peptidoglycan-bound protein of Legionella pneumophila.
- Author
-
Butler CA and Hoffman PS
- Subjects
- Amino Acids analysis, Bacterial Proteins isolation & purification, Cystine metabolism, Electrophoresis, Polyacrylamide Gel, Glycoside Hydrolases, Hydrolysis, Methionine metabolism, Molecular Weight, Muramidase, Peptidoglycan isolation & purification, Protein Binding, Sulfur Radioisotopes, Bacterial Proteins biosynthesis, Legionella metabolism, Peptidoglycan biosynthesis
- Abstract
A 31-kilodalton (kDa) protein was solubilized from the peptidoglycan (PG) fraction of Legionella pneumophila after treatment with either N-acetylmuramidase from the fungus Chalaropsis sp. or with mutanolysin from Streptomyces globisporus. The protein exhibited a ladderlike banding pattern by autoradiography when radiolabeled [( 35S]cysteine or [35S]methionine) PG material was extensively treated with hen lysozyme. The banding patterns ranging between 31 and 45 kDa and between 55 and 60 kDa resolved as a single 31-kDa protein when the material was subsequently treated with N-acetylmuramidase. Analysis of the purified 31-kDa protein for diaminopimelic acid by gas chromatography revealed 1 mol of diaminopimelic acid per mol of protein. When outer membrane PG material containing the major outer membrane porin protein was treated with N-acetylmuramidase or mutanolysin, both the 28.5-kDa major outer membrane protein and the 31-kDa protein were solubilized from the PG material under reducing conditions. In the absence of 2-mercaptoethanol, a high-molecular-mass complex (100 kDa) was resolved. The results of this study indicate that a 31-kDa PG-bound protein is a major component of the cell wall of L. pneumophila whose function may be to anchor the major outer membrane protein to PG. Finally, a survey of other Legionella species and other serogroups of L. pneumophila suggested that PG-bound proteins may be a common feature of this genus.
- Published
- 1990
- Full Text
- View/download PDF
95. New data about female sexual response.
- Author
-
Butler CA
- Subjects
- Adolescent, Adult, Female, Humans, Male, Middle Aged, Orgasm physiology, Pilot Projects, Sexual Behavior
- Abstract
This paper reports on a 195-subject pilot study of female sexual responses. The questionnaire used in the study is described, and the data obtained are discussed and integrated with established research and theory. Discussion focuses on the relatively low frequency with which women actually experience orgasm in sexual relations and the need to understand the reasons for this phenomenon. The concept of the normality of this varied capacity for orgasm is presented in contrast to the usual tendency to evaluate female responses by male standards. Several sexual patterns and different types of orgasms in the female are identified, and the relationship between the type of responses perceived and various other factors is discussed. Responses indicated that, on the average, the strength and degree of gratification provided by an orgasm is not related to the method of induction or to the subjective localization of the pulsating sensations.
- Published
- 1976
- Full Text
- View/download PDF
96. Heat-shock response in Legionella pneumophila.
- Author
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Lema MW, Brown A, Butler CA, and Hoffman PS
- Subjects
- Antigen-Antibody Reactions, Bacterial Proteins immunology, Bacterial Proteins isolation & purification, Chaperonin 60, DNA Topoisomerases, Type II immunology, Ethanol pharmacology, Heat-Shock Proteins immunology, Heat-Shock Proteins isolation & purification, Immunoblotting, Legionella drug effects, Legionella immunology, Molecular Weight, Novobiocin pharmacology, Precipitin Tests, Bacterial Proteins biosynthesis, Heat-Shock Proteins biosynthesis, Legionella metabolism
- Abstract
The heat-shock response of Legionella pneumophila was examined by radiolabelling bacterial cell proteins with [35S]methionine following a temperature shift from 30 to 42 degrees C. Five heat-shock proteins were identified as having molecular masses of 17, 60, 70, 78, and 85 kilodaltons (kDa). The 85- and 60-kDa proteins were equally distributed between supernatant and pellet fractions following ultracentrifugation at 100,000 x g, the 70- and 78-kDa proteins were found primarily in the supernatant, and the 17-kDa protein was found primarily in the pellet. Synthesis of subsets of the heat-shock proteins could be stimulated by novobiocin, patulin, or puromycin. Ethanol, an effector of the heat-shock response in other microorganisms, had little effect on L. pneumophila, even at the highest concentration tolerated by the bacterial cells (1.9%). Finally, the 60-kDa heat-shock protein of L. pneumophila was immunologically cross-reactive with a polyclonal antibody prepared to the Escherichia coli groEL protein. However, a mouse monoclonal antibody reactive with the 60-kDa protein of all legionellae tested did not cross-react with the E. coli groEL protein, suggesting that the Legionella 60-kDa protein contains common and unique epitopes.
- Published
- 1988
- Full Text
- View/download PDF
97. Disulfide-bonded outer membrane proteins in the genus Legionella.
- Author
-
Butler CA, Street ED, Hatch TP, and Hoffman PS
- Subjects
- Disulfides, Electrophoresis, Polyacrylamide Gel, Legionella immunology, Peptidoglycan analysis, Bacterial Outer Membrane Proteins analysis, Legionella analysis
- Abstract
Legionella pneumophila and related species were examined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis for outer membrane proteins. Of the 10 species examined, 9 contained a 24-kilodalton (kDa) major outer membrane protein (MOMP) that was resolvable only when outer membrane material was heated in the presence of 2-mercaptoethanol. Labeling studies with [35S]cysteine indicated that the protein contained cysteine, and disulfide cross-linking of the unreduced complex was demonstrated by labeling with iodoacetamide. The unreduced outer membrane preparation contained peptidoglycan, and after treatment with lysozyme to remove peptidoglycan, a protein complex of 95 kDa was observed by sodium dodecyl sulfate polyacrylamide gel electrophoresis in the absence of 2-mercaptoethanol. Reduction of the 95-kDa complex yielded 24-kDa monomers, suggesting that the 95-kDa complex was composed of four subunits. The 24-kDa MOMP from L. pneumophila was purified, and antibody produced to this protein cross-reacted with all species of Legionella as determined from an immunoblot of a sodium dodecyl sulfate gel. Only serogroup 1 strains of L. bozemanii lacked the 24-kDa MOMP and showed no cross-reactivity. These results suggest that the 24-kDa MOMP common to most species of Legionella contains a genus-specific epitope.
- Published
- 1985
- Full Text
- View/download PDF
98. Continuing measles transmission in students despite school-based outbreak control program.
- Author
-
Wassilak SG, Orenstein WA, Strickland PL, Butler CA, and Bart KJ
- Subjects
- Adolescent, Age Factors, Child, Epidemiologic Methods, Female, Humans, Measles immunology, Measles transmission, Measles Vaccine adverse effects, Medical Records, Pennsylvania, Religion and Medicine, Schools, Disease Outbreaks epidemiology, Immunization, Measles epidemiology, Measles Vaccine administration & dosage
- Abstract
FRom September 9, 1981 to January 5, 1982, a measles outbreak occurred in Warren County, Pennsylvania. The outbreak persisted for nine weeks following the implementation of a county-wide outbreak control program primarily consisting of identifying and vaccinating susceptible schoolchildren. Forty-six cases occurred among students more than two weeks after control program implementation. All 46 had a school record indicating adequate measles vaccination; 13 had been vaccinated at control program clinics by one jet-injector team (Team A). A seroprevalence survey demonstrated that persons vaccinated by Team a had a significantly higher rate of vaccination failure than children vaccinated by other teams (37.0% vs. 5.9%, p = 5.7 X 10(-7). A case-control study was undertaken to assess possible additional risk factors for developing measles. Individuals with measles were nine times more likely than control individuals to have records of measles immunization that could not be verified with providers or to have been vaccinated at 12 months of age. The most likely reasons that this outbreak was sustained among persons with adequate vaccination histories were: 1) impotent vaccines and/or improper vaccine administration techniques were used by one jet-injector team; 2) several persons with histories of adequate vaccination were really not adequately vaccinated; adn 3) a substantial number of persons had been vaccinated at 12 months of age. There is no evidence from this outbreak that transmission of measles can be sustained among the 2-10% of individuals expected to remain susceptible following a single appropriate measles vaccination.
- Published
- 1985
- Full Text
- View/download PDF
99. Technique for intraoperative localization of urinary leakage.
- Author
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McFadden DW, Butler CA, and Pennington LR
- Subjects
- Administration, Intravesical, Humans, Intraoperative Period, Reoperation, Fat Emulsions, Intravenous, Kidney Transplantation, Postoperative Complications diagnosis, Urine
- Abstract
Urinary leakage is an uncommon complication of renal transplantation with a near equal division occurring between ureteral and bladder origins. The diagnosis is usually entertained from a characteristic clinical course and confirmed by preoperative contrast cystography or radionuclide scanning. A technique for precise intraoperative localization of the site of urine extravasation using intracystic instillation of Intralipid has been described. It allows easy recognition without damaging or staining surrounding tissues. In addition, this technique may be applied in other situations to confirm anastomotic or hollow viscus closures.
- Published
- 1987
- Full Text
- View/download PDF
100. Cloning and temperature-dependent expression in Escherichia coli of a Legionella pneumophila gene coding for a genus-common 60-kilodalton antigen.
- Author
-
Hoffman PS, Butler CA, and Quinn FD
- Subjects
- Antigens, Bacterial isolation & purification, Bacterial Proteins genetics, Bacterial Proteins isolation & purification, Blotting, Southern, Chaperonin 60, Cloning, Molecular, Cosmids, Heat-Shock Proteins genetics, Heat-Shock Proteins isolation & purification, Molecular Weight, Nucleic Acid Hybridization, Restriction Mapping, Temperature, Antigens, Bacterial genetics, Escherichia coli genetics, Genes, Bacterial, Legionella genetics
- Abstract
All Legionella species express a 60-kilodalton (kDa) protein which contains a genus-specific epitope recognized by murine monoclonal antibody GW2X4B8B2H6. A genomic cosmid library of Legionella pneumophila chromosomal DNA was constructed in pHC79 and screened for 60-kDa antigen-expressing clones with the monoclonal antibody. A 3.2-kilobase EcoRI fragment from cosmid 14B11 expressing a 60-kDa protein was subcloned into pUC19 (pSH16), and deletion of a 1.2-kilobase HindIII fragment (pSH16A) generated a 33-kDa truncated polypeptide no longer reactive with the monoclonal antibody. Southern blot analysis of chromosomal DNA from selected Legionella species restricted with EcoRI and probed with the 1.2-kilobase fragment coding for the carboxyl region of the protein revealed DNA homology which was not observed with DNA from Escherichia coli. Maxicell analysis of pSH16 identified a second polypeptide of approximately 15 kDa expressed from a gene (htpA) upstream of the gene coding the 60-kDa protein (htpB). Both proteins were preferentially synthesized by L. pneumophila following heat shock (temperature shift from 25 to 42 degrees C), and under steady-state growth conditions the relative level of 60-kDa protein was unaffected by temperature. In E. coli, expression of a 60-kDa protein from pSH16 also increased following heat shock (25 to 42 degrees C), but under steady-state conditions expression was temperature dependent. Temperature-dependent expression from pSH16 was not observed in an rpoH (htpR) mutant strain of E. coli. The Legionella 60-kDa protein appears to be a heat shock protein which shares cross-reactive epitopes with the GroEL homolog of E. coli. In addition, a region of htpB encoding the 27-kDa carboxyl portion of the protein containing the monoclonal antibody-reactive epitope also contains DNA sequences unique to and conserved within the genus.
- Published
- 1989
- Full Text
- View/download PDF
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