248 results on '"Baris O"'
Search Results
52. Imbalance of mitochondrial respiratory chain complexes in epidermal progenitor/stem cells leads to severe skin inflammation
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Weiland, D., Hornig-Do, H., Neuhaus, J., Holzer, T., Niessen, C. M., Tobin, D., Brachvogel, B., Wiesner, R., Baris, O., Weiland, D., Hornig-Do, H., Neuhaus, J., Holzer, T., Niessen, C. M., Tobin, D., Brachvogel, B., Wiesner, R., and Baris, O.
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- 2016
53. An Outbreak of Vancomycin-Resistant Enterococci in a City Hospital Intensive Care Unit: Molecular Characterization of Resistance
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Feray Ferda Şenol, Elif Seren Tanrıverdi, Özlem Aytaç, Zulal Aşçı Toraman, and Barış Otlu
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vancomycin-resistant Enterococcus faecium ,hospital epidemic ,whole-genome analysis ,infection prevention and control ,Medicine (General) ,R5-920 - Abstract
Background and Objectives: Vancomisin-resistant Enterococci (VRE), is a resistant microorganism that colonizes and causes infections in hospitalized patients. The aim of this study was to show the spread of vancomycin-resistant Enterococcus faecium (VREfm) step-by-step in all intensive care units, which started with the growth of VREfm on 2 December 2021 in the blood culture of a patient hospitalized in the anesthesia intensive care unit of our hospital and was found to have reached epidemic size in the surveys. Materials and Methods: Rectal swab samples were taken from all patients hospitalized in intensive care units, VRE colonization was determined, the VanA and VanB resistance genes associated with the vancomycin resistance of VREfm isolates were determined by PCR method, and clonal association analysis was performed by Arbitrarily Primed-PCR (AP-PCR) and PFGE (pulsed-field gel electrophoresis). Results: In our study, VRE were detected in 61 of 2601 rectal swab samples. In total, fifty-four (85.52%) of the VRE isolates were Enterococcus faecium, three (4.91%) was Enterococcus faecalis, three (4.91%) was Enterococcus gallinorum, and one (1.63%) was Enterococcus casseliflavus. It was determined that all of the 54 VREfm isolates, which were the most detected among all VRE isolates, carried the vanA gene. In the clonal association analysis of the isolates by AP-PCR and PFGE methods, it was found that they had 12 different genotypes, 48 of them were included in any cluster, the clustering rate was 88.8%, and the largest cluster was the genotype 1 cluster, with 36 isolates. Of the 54 patients with VREfm isolated recently, 18.51 percent of the clinical samples were isolated before the survey, and 9.25% were isolated after the survey. It was determined that 100% of VREfm isolates were resistant to ampicillin, levofloxacin, ciprofloxacin, high-level gentamicin, trimethoprimsulfamethoxazole, and teicoplanin, 7.4% to tigecycline, and 1.85% to linezolid. Conclusions: In our study, in the clonal association analysis performed by isolating VREfm in rectal swab samples, it was found that 88.8% of the samples were indistinguishably similar, and that the increase in the number of VREfm infections after the index case in our hospital was associated with the epidemic. VREfm infections cause long-term hospitalization, costs and also deaths, which shows the seriousness of the event, and the importance of the combination of epidemiological and molecular analysis in epidemic research.
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- 2023
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54. Effects of an Impaired Fasting Glucose on the Left Atrial Strain Evaluated by Speckle Tracking Echocardiography
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Gülsüm Bingöl, Fulya Avcı Demir, Emre Özmen, Serkan Ünlü, Özge Özden, Kardelen Ohtaroğlu Tokdil, Leyla Bulut Arsoy, Fatma Özpamuk Karadeniz, and Barış Ökçün
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strain echocardiography ,diabetes mellitus ,fasting blood glucose ,Medicine (General) ,R5-920 - Abstract
Background and Objectives: Similar to diabetes, the presence of left ventricular (LV) diastolic function (DD) has been reported in various studies which were conducted with people with a diagnosis of an impaired fasting blood glucose (FBG). This study aimed to examine the effects of the fasting blood glucose (FBG) levels on the left atrial strain (LAS) estimated by two-dimensional echocardiography speckle tracking analyses in patients without known diabetes. Material and Methods: The study included 148 participants (74 female and 74 male) without a history of diabetes mellitus or chronic disease. The patients were divided into two groups as follows: individuals with an FBG < 100 mg/dL and those with an FBG between 100 and 125 mg/dL after at least 8 h of overnight fasting. According to these FBG levels, speckle tracking echocardiography (STE) measures were compared. Results: There was a significant decrease in the LA reservoir (52.3 ± 15 vs. 44.5 ± 10.7; p = 0.001) and conduit strain (36.9 ± 11.7 vs. 28.4 ± 9.7; p = 0.001) in the impaired FBG group. When the STE findings of both ventricles were compared, no significant difference was observed between the groups in right and left ventricular strain imaging. Conclusions: In the earliest stage of LVDD, changes in atrial functional parameters become particularly evident. Echocardiographic analyses of these parameters can help to diagnose and determine the degree of LVDD while the morphological parameters are still normal. The addition of LAS imaging to routine transthoracic echocardiography (TTE) studies in patients with an impaired FBG but without a DM diagnosis may be helpful in demonstrating subclinical LVDD or identifying patients at risk for LVDD in this patient group.
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- 2023
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55. Cessation of Rectal Screening for Vancomycin-Resistant Enterococci: Experience from a Tertiary Care Hospital from Türkiye
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Gülçin Telli Dizman, Gökhan Metan, Pınar Zarakolu, Elif Seren Tanrıverdi, Gülşen Hazırolan, Hanife Aytaç Ak, Dilek Kılınçarslan, Mertcan Uzun, Başak Çelik Kavaklılar, Zafer Arık, Barış Otlu, and Serhat Ünal
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vancomycin-resistant Enterococci ,rectal screening ,surveillance ,outbreak ,Medicine - Abstract
Objective: Here, we compared the impact of different polices on the epidemiology of Vancomycin-resistant Enterococcus faecium bloodstream infections (VRE-BSIs) in a tertiary care hospital including two hospital buildings (oncology and adult hospitals) in the same campus. Material and Methods: All patients who were hospitalized in high-risk units were screened weekly for VRE colonization via rectal swab between January 2006 and January 2013. After January 2013, VRE screening was only performed in cases of suspicion of VRE outbreak and during point prevalence studies to evaluate the epidemiology of VRE colonization. Contact precautions were in place for all VRE-positive patients. The incidence density rates of hospital-acquired (HA)-VRE-BSIs were compared between two periods. Results: While the rate of VRE colonization was higher in the second period (5% vs. 9.5% (p < 0.01) for the adult hospital, and 6.4% vs. 12% (p = 0.02 for the oncology hospital), there was no increase in the incidence rate HA-VRE BSIs after the cessation of routine rectal screening in either of the hospitals. Conclusion: Screening policies should be dynamic and individualized according to the epidemiology of VRE as well as the workforce and cost. Periodical rectal screening of VRE can be discontinued if suspicion of an outbreak can be carefully monitored.
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- 2023
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56. Phenotypic and genotypic diversity among astragalus species growing in eastern anatolia region of Turkey
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Agar, G., Ahmet ADIGUZEL, Baris, O., Gulluce, M., Sahin, F., Sengul, M., Agar, G., Adiguzel, A., Baris, O., Gulluce, M., Şahin, Fikrettin, Sengul, M., and Yeditepe Üniversitesi
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FAMEs ,Astragalus spp ,Diversity ,Turkey ,RAPD ,Phenotypic ,Genotypic - Abstract
Fatty acid (FA) and RAPD profiles were used to examine phenotypic and genotypic relationships, respectively among Astragalus atrocarpus, A. campylosema subsp. campylosema, A. fumosus, A. galegiformes, A. lineatus var. jildisianus and A. trichostigma. All the taxa were separated based on the presence and composition of 33 different FAs. A set of nine FAs (14 : 0, 16 : 0, 18 : 0, 18 N alcohol, 17 : 1 iso G, 18: 1 : ?8c, C18 : 1 : ?9t alcohol, 18:2: ?6c, 19:1: ?6c) were found in all Astragalus taxa. Six of the ten decamer primers examined were selected to explore the genetic variation among the taxa tested. The RAPD results suggested that A. fumosus, A. lineatus and A. trichostigma are closely related and completely different from the rest of the taxa. Four genetically distinct groups were found among the species. High genetic variations were present among species growing wildly in eastern Anatolia region of Turkey, which may imply differences in their origin. It appears that both RAPD and FA analyses are useful for differentiation of Astragalus species.
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- 2010
57. Isolation and characterization of rhizobium strains from wild vetch collected from high altitudes in Erzurum-Turkey
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Adiguzel, A., Ogutcu, H., Baris, O., Karadayi, M., Gulluce, M., Fikrettin Sahin, Adiguzel, A., Ogutcu, H., Baris, O., Karadayi, M., Gulluce, M., Şahin, Fikrettin, Yeditepe Üniversitesi, and Kırşehir Ahi Evran Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü
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Rhizobium leguminosarum subsp. viciae ,phenotypic characterization ,Rhizobium leguminosarum subsp viciae ,Phenotypic characterization ,bacteria ,food and beverages ,ERIC-PCR ,REP-PCR ,biochemical phenomena, metabolism, and nutrition ,Genotypic characterization ,BOX-PCR ,genotypic characterization - Abstract
Recently, there has been a growing level of interest in environmental friendly sustainable agricultural practices and organic farming systems. Increasing and extending the role of biofertilizers such as Rhizobium would decrease the need for chemical fertilizers and reduce adverse environmental effects. Thus, in the development and implementation of sustainable agriculture techniques, biofertilization is of big importance in alleviating the deterioration of natural and environmental pollution. Besides, the assessment of rhizobial genetic diversity is contributing both to the worldwide knowledge of the biodiversity of soil microorganisms and to the utility of rhizobial collections. Particularly, in the last decades, the use of molecular techniques has been contributed greatly to enhance the knowledge of rhizobial diversity. This study was conducted in order to determine the phenotypic and genotypic characterization of Rhizobium leguminosarum subsp. viciae strains that were isolated from perennial wild vetch (Vicia cracca) collected from high altitudes (2000-2500 m) in mountains of Erzurum, Eastern Anatolia, Turkey. In this work, rep-PCR (ERIC-, REP-and BOXPCR) fingerprinting method was used for the genotypic characterization of R. leguminosarum subsp. viciae strains isolated from perennial wild vetch. As a result, a high intraspecies diversity was observed in the rep-PCR (ERIC-, REP-and BOX-PCR) analysis with BOX, ERIC and REP primers between R. leguminosarum subsp. viciae strains. © 2010 University of Bucharest.
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- 2010
58. Mutagenic And Antimutagenic Effects Of Hexane Extract Of Some Astragalus Species Grown In The Eastern Anatolia Region Of Turkey
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Gulluce, M., Agar, G., Baris, O., Karadayi, M., Orhan, F., Şahin, Fikrettin, Gulluce, M., Agar, G., Baris, O., Karadayi, M., Orhan, F., Şahin, Fikrettin, and Yeditepe Üniversitesi
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Mutagenicity ,Astragalus ,Antimutagenicity ,food and beverages ,Escherichia coli WP2 test ,Ames/Salmonella-microsome test ,Hexane extract - Abstract
Medical plants and their various extracts have been occasionally used in the treatment of many diseases. Astragalus is one of those medical plants and it has several biological activities. In the present study, the hexane extracts of six Astragalus species, which are grown in the eastern Anatolia region of Turkey, were isolated, and their mutagenic and antimutagenic properties were investigated by using Salmonella typhimurium TA1535, TA1537 and Escherichia coli WP2uvrA tester strains at 0.05, 0.5 and 5 µg/plate concentrations. Known mutagens sodium azide (NaN3), 9-Aminoacridine (9-AA) and N-Methyl-N'-nitro-N-nitrosoguanidine (MNNG) were used to determine antimutagenic properties of hexane extracts. The results showed that all hexane extracts, investigated in the present study, can be considered genotoxically safe because they do not have mutagenic activity at the tested concentrations. But, a great many of them have antimutagenic activity against 9-Aminoacridine known as a model intercalator agent. The inhibition rates obtained from the antimutagenicity assays ranged from 27.51% (A. macrocephalus - 0.05 µg/plate) to 54.39% (A. galegiformis - 5 µg/plate). These activities are valuable toward an extension of the employ of these drugs as new phytotherapeutic or preservative ingredients. Copyright © 2009 John Wiley & Sons, Ltd.
- Published
- 2010
59. Oral colonization of Acinetobacter baumannii in intensive care units: Risk factors, incidence, molecular epidemiology, association with the occur of pneumonia and sepsis, and infection control measures
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Yucel Duman, Yasemin Ersoy, Elif Tanriverdi, Baris Otlu, Sibel Altunisik Toplu, Harika Gozukara Bag, Sait Tekerekoglu, Nazire Bulam, Elif Kaplan Canturk, and Nalan Parmaksiz
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acinetobacter baumannii ,infection control measures ,intensive care units ,mcr-2 ,oral colonization ,Medicine - Abstract
Objective(s): Oral colonization of Acinetobacter baumannii can lead to infections such as pneumonia and sepsis. We aimed to evaluate oral colonization of hospitalized patients in ICUs and to examine risk factors for oral colonization, molecular epidemiology, and incidence of pneumonia and sepsis. Materials and Methods: The study began in February 2021. Oral cultures were taken. The microorganisms were identified by a Maldi-tof MS mass spectrometry device. Colistin resistance genes were investigated by polymerase chain reaction. Clonal relationships were determined by pulsed-field gel electrophoresis. Results: A. baumannii was found in 21 of 96 patients’ oral cultures. Pneumonia and sepsis due to A. baumannii were detected in 14 and 5 patients, respectively. The mean growth time of A. baumannii from oral cultures was 11.8 days, and the meantime for the occurrence of pneumonia after oral growth was 5.2 days. We determined a plasmid mediated mcr-2 colistin resistance gene in a colistin susceptible A. baumannii strain. It is the first report of the plasmid mediated mcr-2 colistin resistance gene in our country. In total, fourteen different A. baumannii genotypes were determined in PFGE. It was determined that the effects of antibiotic use, oral motor dysfunction, mechanical ventilation, intubation, orogastric tube use, and total parenteral nutrition intake on oral colonization were statistically significant.Conclusion: Oral colonization of A. baumannii is a significant concern in ICUs. We believe that it is important to take oral cultures and follow the risk factors and take infection control measures to prevent oral colonization of resistant isolates in ICUs.
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- 2022
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60. The prevalence and psychological relation of problem shopping: data from a large-scale sample from Turkey
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Başak Ünübol, Barış Önen Ünsalver, Hüseyin Ünübol, and Gökben Hızlı Sayar
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Problem shopping ,Psychiatric distress ,Affect ,Attachment ,IRT ,Psychology ,BF1-990 - Abstract
Abstract Background The purpose of the present study was to comprehensively examine the measurement aspects, the prevalence, and the psychological correlates of problem shopping among a large-scale national sample of Turkish adults. Result Participants (N = 24,380, 50% men, M age = 31.79 years, age range = 18–81 years) completed a questionnaire that comprised the Shopping Addiction Risk Questionnaire, the Brief Symptom Inventory, the Positive and Negative Affect Schedule, and the Experiences in Close Relationships-Revised. Results showed that 1.8% of the participants had probable shopping addiction. Being female, being younger, psychiatric distress, positive affect, negative affect, anxious attachment, and avoidant attachment were positive correlates of problem shopping. Conclusion The results of this large sample size study suggest that shopping addiction is not a rare condition in Turkey. Further research is needed to understand different motives that underlie the problematic shopping behavior in the young and female population in comparison to older and male populations. Preventive programs or any interventions for people with PSB needs to address regulation difficulties and development of healthy strategies to cope with psychiatric distress.
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- 2022
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61. Quasi Resonant Inverter Load Recognition Method
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Metin Ozturk, Fatih Zungor, Burhaneddin Emre, and Baris Oz
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Home appliances ,induction cooking systems ,induction cookers ,load detection methods ,resonant converters ,single switch quasi resonant inverter ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Induction heating (IH) technology is very popular in domestic applications because of its efficiency and safe operating properties. Resonant inverter circuits are widely used in IH systems owing to their high efficiency and soft-switching capability. Among the resonant inverters used in IH systems, the single-switch quasi-resonant inverter topology is generally preferred for low-cost and low-output-power applications. Despite the low-cost advantage of the quasi-resonant inverter, the soft-switching range is quite narrow, and it is not stable depending on the electrical parameters of the load that is desired to be heated. In other words, there is a critical relationship between the electrical characteristics of the pan, turn-on, and turn-off times, which are the control parameters of the semiconductor switch, and the safe working conditions. In addition, when the importance of closed-loop control methods is evaluated together with the selection of resonant circuit elements, it is essential to determine whether the load is suitable for heating, and to determine the electrical properties of the load to provide both reliable and efficient operating conditions. This study focuses on a new load-detection method based on circuit analysis for quasi-resonant induction hobs. After determining the load parameters, the turn-on and turn-off times of the semiconductor switch were determined to obtain the lowest possible switching loss. Therefore, the boundary conditions of the semiconductor switch are maintained within these limits. The proposed method and its advantages for the switch safe operating area were theoretically examined and proved through simulations and prototype circuits.
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- 2022
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62. Detection of SARS-CoV-2 RNA in the Serum Samples of Healthy Blood Donors
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Bahise Çağla TAŞKIN DALGIÇ, Gülgün YENİŞEHİRLİ, Elif Seren TANRİVERDİ, Ayşe ALICI, and Barış OTLU
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sars-cov-2 rna ,blood donor ,transfusion ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: The transmission rate of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) by blood transfusion is thought to be low; however, it has not yet been proven whether the virus is transmitted by blood transfusion. Published studies have reported that SARS-CoV-2 RNA has been detected in the blood, plasma, or serum of infected individuals. This study aimed to investigate the presence of SARS-CoV-2 RNA in the serum of blood donors and evaluate the risk of transmission of SARS-CoV-2 by transfusion. Materials and Methods: In this study, 200 blood samples were taken from volunteer blood donors. In all serum samples, SARS-CoV-2 RNA was detected by reverse-transcription quantitative polymerase chain reaction assay. Medical records of the donors and recipients were retrospectively reviewed. Results: SARS-CoV-2 RNA was detected in seven (3.5%) of the donor serum samples. None of the positive donors had symptoms of coronavirus disease 2019 (COVID-19), and none had been admitted to the hospital after donation. Seven SARS-CoV-2 RNA-positive donor blood components were given to 12 recipients. No medical records indicated that COVID-19 occurred after the transfusion of blood components for recipients. Conclusion: This study demonstrated the presence of SARS-CoV-2 RNA in the serum of asymptomatic donors. Although our data suggest that the transfusion of blood products from asymptomatic donors to recipients with SARS-CoV-2 RNA in their serum may not result in COVID-19, further studies are needed to prove that SARS-CoV-2 is not transmitted by blood transfusion.
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- 2023
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63. Screening for Fosfomycin Resistance Genes in Carbapenem- Resistant Isolates of Enterobacterales from the Bloodstream of Liver Transplant Patients
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Yakup GEZER, Elif Seren TANRIVERDİ, Barış OTLU, Sezai YILMAZ, and Yaşar BAYINDIR
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bacteremia ,enterobacteriaceae ,fosa ,fosa3 ,fosc2 ,hepatic transplantation ,phosphomycin resistance ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: Interest in fosfomycin, an old antibiotic, has been reignited because of the use of its intravenous formulation (fosfomycin sodium) in resistant infections. The aim of this study was to screen for carbapenem resistance in Enterobacterales isolates from the bloodstream, and determine the frequency of carbapenamases types and fosfomycin resistance genes in carbapenem-resistant Enterobacterales (CRE) strains. Materials and Methods: Enterobacterales isolates from the bloodstream of liver transplant patients aged 18 years and older were screened for carbapenem resistance between 2017 and 2019. In isolates that were resistant to at least one carbapenem antibiotic were further screened for fosfomycin susceptibility. Carbapenem susceptibility was tested for by the E-test, fosfomycin susceptibility was tested for by the agar dilution methods, and evaluated in accordance with European Committee on Antimicrobial Susceptibility Testing criteria. The frequency of OXA-48, NDM, KPC, VIM, and IMP type carbapenemases and fosA, fosA3, and fosC2 fosfomycin resistance genes were screened for using the polymerase chain reaction method. Results: A total of 115 Enterobacterales isolates from bloodstream infections were obtained. Carbapenem resistance was detected in 34 (29.3%) isolates, 41.2% of them were Escherichia coli and 58.8% of them were Klebsiella pneumoniae. Out of the 34 isolates, 61.8% produced carbapenemases, and OXA-48 was the most common type of carbapenemase. The fosfomycin resistance rate was 73.5%. Among the 34 carbapenem-resistant isolates, the frequency of the fosA gene was 5.9%. The genes fosA3 and fosC2 were not detected in any isolates. FosA + OXA-48 and fosA + NDM genes were detected in CRE isolates. Conclusion: This is the first study reporting on the screening for fosfomycin resistance genes in blood isolates of liver transplant patients in Turkey. Despite high fosfomycin resistance, detection of only two resistance genes reveals that there may be fosfomycin resistance due to other resistance mechanisms.
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- 2022
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64. MaaS platform features: An exploration of their relationship and importance from supply and demand perspective
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Alexia Athanasopoulou, Tom Deijkers, Baris Ozkan, and Oktay Turetken
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Mobility as a Service ,Requirements ,Centrality Network ,Partial Correlation Network ,Urban Mobility ,City planning ,HT165.5-169.9 ,Transportation engineering ,TA1001-1280 - Abstract
Mobility as a Service (MaaS) aims to offer travelers easy and convenient access to transportation modes via a joint digital channel, often in a mobile application. MaaS has the potential to fundamentally change the way we commute as it encourages a more sustainable travel behavior. MaaS, as a business model, is an innovative concept that integrates a variety of these solutions and can significantly change the mobility environment by encouraging sustainable travel behavior. Despite the existing initiatives and efforts toward MaaS solutions, there is still no consensus on the essential features of MaaS platforms for actors from the supply and demand sides. This study explores the critical features of MaaS platforms from the perspective of mobility service providers - MSP (i.e., supply-side) and travelers (i.e., demand-side). We collected data via interviews with mobility experts for the supply side and a survey for the users' side. Based on a Gaussian Graphical Model, our results show that optimizing the number and use of the vehicles and appropriate data handling are the essential features of a MaaS platform for the MSPs. For the travelers, although retrieval of personal information and enhancing services, such as suggestions on local events and concert tickets, are expected, they are considered less significant. Our study provides insights into the features of MaaS platforms through synthesized and prioritized features -including their relationships-which would be helpful both for research and practice.
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- 2022
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65. A Case of Lymphadenitis Mimicking Aortic Dissection in a Patient Diagnosed with Behçet's Disease.
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Baris, O., Findik, O., and Kunt, A. T.
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- 2023
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66. RAPD and FAME analyses of Astragalus species growing in eastern Anatolia region of Turkey
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Adiguzel, A., Agar, G., Baris, O., Gulluce, M., Şahin, Fikrettin, Sengul, M., Adiguzel, A., Agar, G., Baris, O., Gulluce, M., Şahin, Fikrettin, Sengul, M., and Yeditepe Üniversitesi
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FAMEs ,RAPD ,Genetic and phenotypic diversity ,Astragalus species - Abstract
Fatty acid (FAs) and RAPD profiles were used to examine phenotypic and genetic relationships between eight Astragalus species including Astragalus maximus Willd. var. maximus, Astragalus coadunatus Hub. Mor. & Chamb., Astragalus kurdicus Boiss. var. kurdicus, Astragalus lagurus Willd, Astragalus christianus L., Astragalus cicer L., Astragalus atrocarpus Champ & Matthews and Astragalus onobrychioides Bieb., which were wildly growing in eastern Anatolia region of Turkey. All of the eight Astragalus species tested in this study were separated based on the presence and composition of 45 different FAs. Four of the Astragalus species including A. coadunatus, A. lagurus, A. christianus, and A. atrocarpus were rich in terms of FA contents containing at least 22-31 different FAs. The relative proportions of two fatty acids, 16:0, and 18:1:?8c were higher in these four Astragalus species. The remaining species have limited number of FAs with unique FAMEs profiles. Six of the 10 decamer primers examined were selected to find out genetic polymorphism in Astragalus species. A total of 98 polymorphic bands were observed, ranging in size from 250 bp to 3000 bp. The RAPD results suggested that A. atrocarpus, A. onobrychioides and A. kurdicus are closely related and completely different from the other species. Six genetically distinct groups were found among the species of Astragalus. High genetic variations among Astragalus species growing wildly in eastern Anatolia region of Turkey may imply the differences in their origins. The results in the present study suggested that both RAPD and FA analyses are useful for differentiation of Astragalus species. © 2006 Elsevier Ltd. All rights reserved. Türkiye Bilimsel ve Teknolojik AraÅ?tirma Kurumu This study was supported by grants from the Research Funds appropriated to Ataturk University and The Scientific and Technological Research Council of Turkey (TUBITAK).
- Published
- 2006
67. 392 Imbalance of mitochondrial respiratory chain complexes in epidermal progenitor/stem cells leads to severe skin inflammation
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Weiland, D., primary, Hornig-Do, H., additional, Neuhaus, J., additional, Holzer, T., additional, Niessen, C.M., additional, Tobin, D., additional, Brachvogel, B., additional, Wiesner, R., additional, and Baris, O., additional
- Published
- 2016
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68. A Case of Lymphadenitis Mimicking Aortic Dissection in a Patient Diagnosed with Behçet's Disease
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Baris, O, primary, Findik, O, additional, and Kunt, AT, additional
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- 2016
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69. Investigation of in vitro mineral forming bacterial isolates from supragingival calculus
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Demir, T, primary, Baris, O, additional, and Gulluce, M, additional
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- 2016
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70. Obezite farkındalığı ve içgörü ölçeği: geçerlilik ve güvenirlik çalışması
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Medine Yılmaz, Gülçin Uyanık, Gamze Ağartıoğlu Kundakçı, Barış Önder Pamuk, and Gülseren Pamuk
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obezite ,obezite farkındalığı ,geçerlilik ,güvenirlik ,obesity ,obesity awareness ,validity ,reliability ,Medicine (General) ,R5-920 - Abstract
Amaç: Obezite Farkındalığı ve İçgörü Ölçeğinin (OFİ Ölçeği) (OASIS: The Obesity Awareness and Insight Scale) Türkçeye ve Türk kültürüne uyarlanarak geçerlilik ve güvenirlik çalışmalarının yapılmasıdır. Gereç ve yöntem: Metodolojik tipteki bu araştırma bir eğitim ve araştırma hastanesinin endokrinoloji ve metabolizma hastalıkları polikliniğine ile bir eğitim aile sağlığı merkezinde yürütülmüştür. Araştırma örneklemini bu birimlere başvuruda bulunan165 fazla kilolu/obez birey oluşturmuştur. Veriler Görüşme Formu ve “Obezite Farkındalığı ve İçgörü Ölçeği (OFİ)” ile toplanmıştır. Ölçeğin geçerlilik analizleri “Kapsam Geçerlilik İndeksi, Açımlayıcı Faktör Analizi” ile, güvenilirlik analizleri “değişmezlik, iç tutarlılık ve madde toplam puan korelasyonu” ile yapılmıştır. Bulgular: Bireylerin yaş ortalaması 50,27±16,58 olup, %63,6’sı kadındır. Geçerlilik analizlerinde KMO=0,89, χ2 =468,137; p=0,000’dır. OFİ güçlü iç tutarlılık (Cronbach alpha 0,86), test tekrar test güvenirliği (0,79) göstermiştir. Madde toplam korelasyonu değerleri 0,428-0,746 arasında değişmektedir. Açımlayıcı faktör analizine göre ölçek tek boyutludur. OFİ toplam puan ortalaması 6,87±2,48 olup, bireylerin obezite farkındalıklarının ortanın üstünde olduğu belirlenmiştir. Sonuç: Obezite Farkındalığı ve İçgörü Ölçeği, fazla kilolu/ obez bireylerin obezite farkındalıklarını belirlemek amacıyla kullanılabilecek geçerli ve güvenilir bir ölçme aracıdır.
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- 2021
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71. Investigation of In vitro Mineral Forming Bacterial Isolates from Supragingival Calculus.
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Baris, O., Demir, T., and Gulluce, M.
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- 2017
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72. Covid-19 Krizi Ekseninde Ulusal Kriz Yönetiminde Yeniden Yapılanma
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Barış Övgün and Halil Yasin Tamer
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covid-19 ,kriz yönetimi ,kamu yönetimi ,karşılaştırmalı politika ,kriz politikası ,crisis administration ,public administration ,comparative policy ,crisis policy ,Economics as a science ,HB71-74 - Abstract
Bu çalışma, içerisinde bulunduğumuz Covid-19 salgınının beraberinde getirdiği krizin nasıl yönetilmesi gerektiği ve bu çerçevede nasıl bir kriz yönetimi mekanizması oluşturulmalı sorularına yanıt aramaktadır. Amaç, Covid-19 krizinin kriz yönetiminde yaşattığı koordinasyon eksikliğini gözler önüne sererek etkisiz kriz yönetim mekanizmalarının nasıl etkin hale getirebileceğine ilişkin öneriler geliştirebilmektir. Bu sebeple bu çalışma kapsamında sekiz farklı ülke örneği, Covid-19 kriziyle mücadele politikası bağlamında karşılaştırmalı analize tabi tutulmuştur. Elde edilen bilgiler ışığında, Türkiye özelinde Covid-19 krizi ve sonrasındaki muhtemel krizlere dönük olarak daha hızlı, daha esnek ve daha güçlü kararlar alabilme potansiyeline sahip bir kriz yönetimi ofisinin kurulması önerilmektedir. Bu ofisin nasıl şekilleneceği, yapısal-işlevsel özelliklerinin neler olması gerektiği, devlet kapasitesinin hangi yönlerini geliştirmesi gerektiği ve gelecekteki krizlerle nasıl başa çıkacağının köşe taşlarının reform yaklaşımı ile karşılaştırmalı kamu politikası perspektifinden gerçekleştirilecek analizlerle belirlenmesi bu çalışmanın yöntemini oluşturmaktadır.
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- 2021
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73. Does mtDNA deletion accumulation lead to chronic inflammation during skin ageing?
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Weiland, D., Baris, O. R., Wiesner, R. J., Weiland, D., Baris, O. R., and Wiesner, R. J.
- Published
- 2014
74. Mosaic respiratory chain deficiency due to induced mtDNA deletions in the mouse heart leads to an increase in inducible ventricular arryhthmias after myocardial infarction
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Stoeckigt, F., Baris, O., Ederer, S., Linhart, M., Andrie, R., Nickenig, G., Wiesner, R., Schrickel, J. W., Stoeckigt, F., Baris, O., Ederer, S., Linhart, M., Andrie, R., Nickenig, G., Wiesner, R., and Schrickel, J. W.
- Published
- 2014
75. Ortopedi ve Travmatoloji Alanındaki Hatalı Tıbbi Uygulamalar: Yargıtay Dava Kararlarının İncelenmesi
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Timur Yıldırım, Barış Özkul, Mehmet Ali Talmaç, Sevda Uzun Dırvar, and Ferdi Dırvar
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malpraktis ,ortopedi ,yargıtay kararları ,malpractice ,orthopedics ,supreme court decisions ,Medicine (General) ,R5-920 - Abstract
Amaç: Bu çalışmada amacımız yargının son aşaması olan Yargıtay’a taşınan ortopedi ve travmatoloji alanında tıbbi uygulama hataları ile ilgili kararları incelemek ve bu alanda aydınlatıcı bulgular ortaya konularak literatüre katkı sağlamaktır. Gereç ve Yöntem: T.C. Yargıtay Başkanlığı resmi internet sitesi ile Kazancı veri bankası üzerinden “ortopedi” ve “ortopedi ve travmatoloji” anahtar kelimeleri kullanılarak ulaştığımız Yargıtay temyiz kararlarından, Ocak 2013 y ile Haziran 2020 yılları arasındaki ortopedi ve travmatoloji alanındaki tıbbi uygulama hatası ile ilgili olan 55 karar çalışma kapsamına alınmıştır. Veriler ceza ve hukuk tazminat davaları olarak sınıflandırıldı ve içerik analizleri yapıldı. Bulgular: Kararların 37’si %67,3 ceza davası, 18‘i %32,7 hukuk tazminat davasıydı. Hasta ve hasta yakınlarının yargı mercilerine başvurma gerekçelerinde 22 olgu %40 ile ilk sırada tedavi eksikliği/hatası, ikinci sırada 15 olgu % 27,3 ile ilgisizlik/özensizlik iddiaları vardı. 28 olguda % 50,9 organ fonksiyon azalması ya da kaybının geliştiği, 16 olguda %29,1 ölüm meydana geldiği tespit edilmiştir. Olguların 39’unun %70,9 travma alanında olduğu, bunu omurga ve artroplasti hastalarının takip ettiği, travma olgularının 22’sinin %56,4 yüksek enerjili travma olduğu tespit edilmiştir. Yargıtay ilgili dairesinin 55 davanın 32’sinde %58,2 yerel mahkeme kararını bozma, 21’inde %38,2 kararı onama kararı . 2’inde %3,6 ise görevsizlik kararı alındığı tespit edildi. Bu 32 davanın 23’ünde %71,8 karar bozma gerekçesi olarak bilirkişi raporunun eksik, yetersiz veya çelişkili olduğu tespit edilmiştir. Yargıtay ilgili dairesinin bozma kararı aldığı yerel mahkeme kararlarından hukuk tazminat davası olanların anlamlı p
- Published
- 2020
76. Site suitability analysis for potential agricultural land with spatial fuzzy multi-criteria decision analysis in regional scale under semi-arid terrestrial ecosystem
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Barış Özkan, Orhan Dengiz, and İnci Demirağ Turan
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Medicine ,Science - Abstract
Abstract The main purpose of this study is to identify suitable potential areas for agricultural activities in the semi-arid terrestrial ecosystem in the Central Anatolia Region. MCDA was performed in fuzzy environment integrated with GIS techniques and different geostatistical interpolation models, which was chosen as the basis for the present study. A total of nine criteria were used, as four terrain properties and five soil features to identify potential sites suitable for agriculture lands in Central Anatolia which covers approximately 195,012.7 km2. In order to assign weighting value for each criterion, FAHP approach was used to make sufficiently sensitive levels of importance of the criteria. DEM with 10 m pixel resolution used to determine the height and slope characteristics, digital geology and soil maps, CORINE land use/land cover, long-term meteorological data, and 4517 soil samples taken from the study area were used. It was identified that approximately 30.7% of the total area (59,921.8 ha) is very suitable and suitable for potential agriculture activities on S1 and S2 levels, 42.7% of the area is not suitable for agricultural uses, and only 27% of the area is marginally suitable for agricultural activities. Besides, it was identified that 34.8% of the area is slightly suitable.
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- 2020
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77. Factors Associated With Highest Symptoms of Anxiety During COVID-19: Cross-Cultural Study of 23 Countries
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Valentina N. Burkova, Marina L. Butovskaya, Ashley K. Randall, Julija N. Fedenok, Khodabakhsh Ahmadi, Ahmad M. Alghraibeh, Fathil Bakir Mutsher Allami, Fadime Suata Alpaslan, Mohammad Ahmad Abdelaziz Al-Zu’bi, Kholoud Imhammad Meqbel Al-Mseidin, Derya Fatma Biçer, Hakan Cetinkaya, Oana Alexandra David, Silvia Donato, Seda Dural, Paige Erickson, Alexey M. Ermakov, Berna Ertuğrul, Emmanuel Abiodun Fayankinnu, Maryanne L. Fisher, Fakir Al Gharaibeh, Lauren Hocker, Ivana Hromatko, Elena Kasparova, Alexander Kavina, Yahya M. Khatatbeh, Hareesol Khun-Inkeeree, Kai M. Kline, Fırat Koç, Vladimir Kolodkin, Melanie MacEacheron, Irma Rachmawati Maruf, Norbert Meskó, Ruzan Mkrtchyan, Poppy Setiawati Nurisnaeny, Oluyinka Ojedokun, Damilola Adebayo, Mohd S. B. Omar-Fauzee, Barıs Özener, Edna Lúcia Tinoco Ponciano, Muhammad Rizwan, Agnieszka Sabiniewicz, Victoriya I. Spodina, Stanislava Stoyanova, Nachiketa Tripathi, Satwik Upadhyay, Carol Weisfeld, Mohd Faiz Mohd Yaakob, Mat Rahimi Yusof, and Raushaniia I. Zinurova
- Subjects
anxiety ,COVID-19 ,cross-cultural ,personal experience ,personal awareness ,personal trust in official sources ,Psychology ,BF1-990 - Abstract
The COVID-19 restrictions have impacted people’s lifestyles in all spheres (social, psychological, political, economic, and others). This study explored which factors affected the level of anxiety during the time of the first wave of COVID-19 and subsequent quarantine in a substantial proportion of 23 countries, included in this study. The data was collected from May to August 2020 (5 June 2020). The sample included 15,375 participants from 23 countries: (seven from Europe: Belarus, Bulgaria, Croatia, Hungary, Italy, Romania, Russia; 11 from West, South and Southeast Asia: Armenia, India, Indonesia, Iran, Iraq, Jordan, Malaysia, Pakistan, Saudi Arabia, Thailand, Turkey; two African: Nigeria and Tanzania; and three from North, South, and Central America: Brazil, Canada, United States). Level of anxiety was measured by means of the 7-item Generalized Anxiety Disorder Scale (GAD-7) and the 20-item first part of The State-Trait Anxiety Inventory (STAI)—State Anxiety Inventory (SAI). Respondents were also asked about their personal experiences with COVID-19, attitudes toward measures introduced by governments, changes in attitudes toward migrants during a pandemic, family income, isolation conditions, etc. The factor analysis revealed that four factors explained 45.08% of variance in increase of anxiety, and these components were interpreted as follows: (1) personal awareness of the threat of COVID-19, (2) personal reaction toward officially undertaken measures and attitudes to foreigners, (3) personal trust in official sources, (4) personal experience with COVID-19. Three out of four factors demonstrated strong associations with both scales of anxiety: high level of anxiety was significantly correlated with high level of personal awareness of the threat of COVID-19, low level of personal reaction toward officially undertaken measures and attitudes to foreigners, and high level of presence of personal experience with COVID-19. Our study revealed significant main effects of sex, country, and all four factors on the level of anxiety. It was demonstrated that countries with higher levels of anxiety assessed the real danger of a pandemic as higher, and had more personal experience with COVID-19. Respondents who trusted the government demonstrated lower levels of anxiety. Finally, foreigners were perceived as the cause of epidemic spread.
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- 2022
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78. The Relationship between Biofilm Production and Antimicrobial Resistance in Methicillin-sensitive and Methicillin-resistant Staphylococcus aureus Isolates: In vitro Evaluation
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Bahise Çağla TAŞKIN DALGIÇ, Gülgün YENİŞEHİRLİ, Barış OTLU, Elif Seren TANRIVERDİ, Aydan YENİŞEHİRLİ, and Yunus BULUT
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methicillin-resistant s. aureus ,methicillin-sensitive s. aureus ,antimicrobial susceptibility ,biofilm formation ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: The biofilm formation ability plays an important role in the pathogenesis of Staphylococcus aureus infections. This study aimed to investigate the biofilm production ability of methicillin-resistant S. aureus (MRSA) and methicillin-sensitive S. aureus (MSSA) isolates and evaluate the relationship between their antimicrobial resistance profile and biofilm formation ability. Materials and Methods: A total of 50 MRSA and 50 MSSA isolates were examined. The antimicrobial susceptibility testing of isolates was performed using the disk diffusion method. The broth microdilution method was used to determine the minimum inhibitor concentrations (MICs) of vancomycin and teicoplanin. The biofilm formation ability of isolates was tested on Congo Red Agar. The presence of icaA, icaD, IS256, and eno genes was investigated by polymerase chain reaction. Results: Both MRSA and MSSA isolates were found susceptible to vancomycin, teicoplanin, chloramphenicol, and linezolid. Two MRSA and 2 MSSA isolates were determined as heterogeneous vancomycin-intermediate S. aureus. No significant difference was observed between the biofilm formation ability of MRSA and MSSA isolates. The eno and icaD genes were detected in 100% of both MSSA and MRSA isolates. The icaA gen was detected in all MRSA and 49 MSSA isolates. The IS256 was detected in 35 of the 50 MRSA isolates. None of the MSSA isolates were positive for the IS256. The amikacin, gentamicin, ciprofloxacin, levofloxacin, rifampin, clindamycin, and tetracycline resistance rates in IS256- positive MRSA isolates were significantly higher than those IS256-negative MRSA isolates. The mean MIC values of vancomycin and teicoplanin in IS256-positive MRSA isolates were significantly higher than those in IS256-negative MRSA isolates. Conclusion: This study revealed that the presence of the IS256 sequence was correlated with antimicrobial resistance, especially MRSA isolates.
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- 2022
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79. Important anatomical landmarks in the lateral nasal wall
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Baris O, Donmez, Bulent V, Agirdir, and Muzaffer M, Sindel
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Male ,Risk Factors ,Dissection ,Paranasal Sinuses ,Cadaver ,Humans ,Endoscopy ,Female ,Nasal Cavity ,Rhinoplasty ,Nasolacrimal Duct ,Sensitivity and Specificity - Abstract
The study aimed to investigate the anatomy of the lateral nasal wall to provide a set of measurements among some important anatomical landmarks and to reveal the relationship between them.Fifty half heads were dissected to determine the distances between important landmarks in the lateral nasal wall for endoscopic sinus surgery. Landmarks were measured with an electronic caliper. This study was carried out between December 2002 and February 2003 at the Anatomy Research Laboratory, Faculty of Medicine, Akdeniz University, Antalya, Turkey.Results were provided as mean +/- standard deviation. In our study, some of the critical distances as in the lateral nasal wall were measured and results showed consistency to the data found in the literature.Our results are useful to achieve safe endoscopic sinus surgery.
- Published
- 2005
80. Gene expression profiling of thyroid mitochondria rich tumours reveals a coordinated up-regulation of genes involved in oxidative metabolism
- Author
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Baris, O, Savagner, F, Nasser, V, Loriod, Béatrice, Granjeaud, S, Guyetant, S, Franc, B, Rodien, P, Rohmer, V, Bertucci, F, Birnbaum, D, Malthiery, Y, Houlgatte, R, Reynier, P, Technologies avancées pour le génôme et la clinique (TAGC), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Centre de Recherche en Cancérologie de Marseille (CRCM), Aix Marseille Université (AMU)-Institut Paoli-Calmettes, and Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience; no abstract
- Published
- 2004
81. Sodium tungstate alleviates biomechanical properties of diabetic rat femur via modulation of oxidative stress
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Donmez, Baris O., primary, Ozturk, Nihal, additional, Sarikanat, Mehmet, additional, Oguz, Nurettin, additional, Sari, Ramazan, additional, and Ozdemir, Semir, additional
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- 2014
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82. The Effect of Common Knowledge Construction Model-based Teaching on the Cognitive and Psychomotor Learning of 7th Grade Students
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Barış Özden and Nilgün Yenice
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Theory and practice of education ,LB5-3640 ,Science - Abstract
This study aimed to investigate the effect of science teaching, based on the Common Knowledge Construction Model (CKCM), on cognitive and psychomotor learning in 7th-grade students. The study group consisted of 29 students from two public schools affiliated with the Ministry of National Education in the 2018-2019 academic year. The study was carried out following a semi-experimental pre-test post-test control group research design. The data were collected with a “Scientific Inquiry Skills Test,” and a “Psychomotor Skills Rubric” (PSR) developed by the researchers. The PSR was used to evaluate the practice exam results of both groups. Data were analyzed with a standard statistics package. It was determined that the scientific inquiry skills post-test scores of the experimental group (X=15.87) were higher than the control group (X=10.92). The difference was observed to be significant. Also, a comparison of the total post-test PSR scores showed a statistically significant difference between the experimental (X=15.44) and control groups (X=13.30).
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- 2020
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83. Facet Dislocation Fractures of Subaxial Cervical Spine: A Treatment Algorithm for Surgical Approach Decision
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Barış Özöner, Levent Aydın, Songül Meltem Can, Ahmet Murat Müslüman, and Adem Yılmaz
- Subjects
allen and ferguson classification ,decision-making ,facet dislocation fracture ,subaxial cervical spine ,subaxial injury classification and severity scale ,traumatic disc herniation ,Medicine - Abstract
Objective:To perform an analysis of the surgical approach choice in subaxial cervical spine (SCS) facet dislocations.Method:The inclusion criteria were as follows: radiologically confirmed traumatic SCS facet dislocation, 18-70 years of age, stable medical condition, and isolated cervical trauma. The management scheme was based on the presence of traumatic disc herniation (TDH) and the grade of dislocation according to the Allen and Ferguson classification (AFC). In the absence of TDH, the reduction was attempted via traction under general anesthesia before surgery. In the presence of TDH, the reduction was attempted after anterior discectomy. Posterior open reduction was performed in case of an unsuccessful reduction attempt. Anterior stabilization was sufficient in AFC distractive flexion stage (DFS) 2 fractures while combined stabilization was performed in DFS 3 and 4 fractures.Results:Thirty-two patients were included in the study. TDH was detected in 14 patients. The number of patients with DFS 2, 3, and 4 fractures was 6, 18, and 8, respectively. Posterior open reduction was needed in 9 patients. Anterior stabilization was performed in 6 patients (3 with TDH, 3 without TDH) and combined stabilization was performed in 26 patients (11 with TDH, 15 without TDH) via 6 anterior, 7 anterior-posterior, 15 posterior-anterior, and 4 anterior-posterior-anterior approaches. Satisfactory follow-up results were achieved in radiological and neurological evaluations, and neck pain scores.Conclusion:The treatment algorithm for subaxial facet dislocations based on DFS and TDH presence provided satisfactory results.
- Published
- 2020
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84. Pseudo-outbreak of stenotrophomonas maltophilia isolated from kidney stones and attributed to inadequate sterilization: Investigation of molecular typing and clonal relationship
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Reyhan Yis, Selma Tosun, Emine Deniz Bayram, Ozlem Gamze Gulfidan, Tansu Degirmenci, Bulent Gunlusoy, Baris Otlu, and Cigdem Kuzucu
- Subjects
stenotrophomonas maltophilia ,pseudo-outbreak ,inadequate sterilization ,molecular typing ,clonal relationship ,Medicine - Abstract
Stenotrophomonas maltophilia is a gram-negative bacterium. Hospitals can be a source of S. maltophilia because it adheres to nonliving surfaces and forms a biofilm. This study was performed to investigate the clonal relationship between S. maltophilia isolates obtained from kidney stone samples. Samples of kidney stones taken from patients and surrogate samples from nephroscopes, cleaning solution, disinfectant solution were included in the study. The clonal relationship between isolates was determined by PFGE. S. maltophilia was isolated from 34 of 94 kidney stone samples sent from the urology operating room between July 2017 and January 2018. A total of 26 S. maltophilia strains (21 from kidney stone samples, three from nephroscopes, and two from urine culture) were isolated. PFGE showed that the 21 kidney stone isolates and the 3 S. maltophilia isolates obtained from the nephroscope belonged to the same clone. The two urine culture isolates showed no clonal relationship to the outbreak isolates and were considered sporadic. Molecular typing confirmed that this pseudo-outbreak was attributed to inadequate disinfection of the nephroscopes. After disinfection protocols were reviewed and revised as needed, especially regarding the removal of organic material from nephroscopes after use, no further bacterial growth was detected from kidney stone specimens obtained with nephroscopes. [Med-Science 2020; 9(3.000): 589-94]
- Published
- 2020
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85. A Post-Occupancy Evaluation Model Based On Spatio-Temporal Mapping Method For University Outdoor Spaces
- Author
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Özgür Göçer, Kenan Göçer, Altuğ Melik Başol, Mustafa Furkan Kıraç, Ayse Özbil Torun, Mujesira Bakovic, Faizan Pervez Sıddıquı, and Barış Özcan
- Subjects
outdoor space ,post-occupancy evaluation ,university campus ,spatio-temporal mapping. ,Architecture ,NA1-9428 ,City planning ,HT165.5-169.9 - Abstract
Not only do university campuses consist of a variety of social and educational buildings, they also create an integrated system with their outdoor spaces and furniture, recreation and landscape areas. Outdoors have the potential to create social interaction, rest and relaxation, recreation, exchange of ideas and a strong sense of ownership and belonging. Creating a common identity for social life by enabling people to communicate and socialize with each other is the most important function of outdoor spaces. However, although the rationality of external spaces is designed, it is possible to use other than what is expected in practice. The relationship between the external spaces and the building groups, the adequacy, the duration of use, the accessibility and the interaction of the physical environment should be examined with a holistic approach to understand the difference between expectations and reality. In order to identify user needs in outdoor spaces as a way to assess if human use and design intentions are in fact successful, post occupancy evaluation (POE) is recommended as the most significant advanced method. Unfortunately, although studies on the evaluation of indoor spaces have been increasing day by day, there is no comprehensive study of POE that can be applied to the outdoor spaces, especially in university campuses. In this study, a POE method which discusses the variables that affect the use of outdoor space and the interaction between these variables is introduced. The proposed method was applied in a suburban university campus and the results were evaluated in terms of outdoor use.
- Published
- 2020
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86. Emergence of colistin and carbapenem-resistant Acinetobacter calcoaceticus-Acinetobacter baumannii (CCR-Acb) complex in a neurological intensive care unit followed by successful control of the outbreak
- Author
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Gökhan Metan, Pınar Zarakolu, Barış Otlu, İlknur Tekin, Hanife Aytaç, Ertuğrul Ç. Bölek, Baki C. Metin, Ethem M. Arsava, and Serhat Ünal
- Subjects
Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Colistin and carbapenem-resistant Acinetobacter calcoaceticus- Acinetobacter baumannii complex (CCR-Acb complex) was isolated from two consecutive patients in the neurological intensive care unit (NICU). An urgent reaction to this desperate situation was required. Patients and methods: Screening cultures were taken from the other patients sharing the NICU with index patients and repeated periodically. NICU was closed for new admissions. Infection control precautions (ICP) such as hand hygiene, cohorting patients colonized with CCR-Acb complex, cohorting the staff caring for these patients, daily bathing with chlorhexidine gluconate impregnated clothes, using gowns when contacting with patients and patient care area, and sodium hypochlorite tablets for environmental cleaning were enforced. Results: Screening cultures revealed carbapenem-resistant Acb complex in 12 out of 32 patients and 8 of them were colonized with CCR-Acb complex. NICU was opened for new admissions one month later. No further new cases with CCR-Acb complex were detected by screening cultures after 6 weeks with enforcement of ICP. Moreover, the rate of nosocomial infections caused by other multi-drug resistant Gram-negative bacilli (MDR-GNB) decreased significantly when rates before and after closing the NICU were compared. Conclusion: ICP were effective not only to limit the spread of CCR-Acb complex but also decreased the incidence of other MDR-GNB infections when applied adequately. Keywords: Acinetobacter baumannii, Carbapenem resistance, Colistin resistance, Intensive care unit, ICU
- Published
- 2020
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87. Olfaktör oluk meningiomunun pterional yaklaşımla çıkarılmasından sonra anosminin düzelmesi
- Author
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Barış ÖZÖNER and Seçkin AYDIN
- Subjects
anosmi ,olfaktör sinir ,olfaktör oluk menengiomu ,pterional yaklaşım ,olfactory nerve ,olfactory groove meningioma ,Medicine (General) ,R5-920 - Abstract
Anosmi, olfaktör oluk meningiomlarının (OGM) erken belirtilerinden biridir. Ek olarak, anosminin, saptanması durumunda, operasyon sonrasında düzelmesi beklenmemektedir. Olgumuzda 42 yaşında kadın hasta, bilateral anosmi ve görme bozukluğu ile başvurmaktaydı. Radyolojik incelemelerde belirgin peritümoral ödem ile birlikte büyük bir OGM saptandı. Tümör, pterional yaklaşımla, sol olfaktör sinirinin korunmasıyla, total rezeke edildi. Postoperatif erken dönemde görme bozukluğu düzeldi. Ayrıca, 6 aylık takipte sol burundan koku duyusu alınması sağlandı. Buna göre, anosminin OGM cerrahisi sonrasında kalıcı olacağı yaygın kabul gören bir durum olsada, olfaktör sinirlerin korunması ile nadir vakalarda koku alma duyusu geri kazanılabilir.
- Published
- 2020
- Full Text
- View/download PDF
88. Prenatal exposure to oestrogens estimated by digit ratio (2d/4d) and breast size in young nulliparous women
- Author
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Berna Ertuğrul, Barış Özener, and Bogusław Pawłowski
- Subjects
2d/4d ,breasts ,oestrogens ,prenatal exposure ,foetal ,Biology (General) ,QH301-705.5 ,Human anatomy ,QM1-695 ,Physiology ,QP1-981 - Abstract
Digit ratio (2d/4d) in humans is commonly used as a proxy for the exposure to oestrogens and androgens in prenatal life. Masculinisation/feminisation in adults may be also related to digit ratio and therefore to the oestrogen/androgen ratio in prenatal life. It has been shown, for instance, that Waist-to-Hip ratio (WHR) and the amount and distribution of body fat are related to digit ratio in women. A species-specific, sexually dimorphic morphological trait in humans is also a pair of permanent breasts that develop during puberty, under the influence of oestrogens. Here we test if prenatal exposure to oestrogens (in relation to androgens), measured by digit ratio, may also be related to breast size in young, nulliparous women. 133 Turkish students (mean age 22.2) were measured. Breast size was calculated as the difference between breast and under-breast circumferences. We found that when controlling for body mass index (BMI), both right and left digit ratios correlate positively with breast size. This relationship is stronger for the digit ratio of the right hand, which confirms that this side is a better measure of sex differences. Thus, higher exposure to oestrogens in prenatal life is related with stronger expression of a sexually dimorphic trait, such as breast size, in adult women.
- Published
- 2020
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89. Vision-Based Moving UAV Tracking by Another UAV on Low-Cost Hardware and a New Ground Control Station
- Author
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Emre Cintas, Baris Ozyer, and Emrah Simsek
- Subjects
Artificial neural networks ,computer vision ,KCF ,object detection ,object recognition ,target tracking ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Automatic flying target detection and tracking in video sequences acquired from a camera mounted on another Unmanned Aerial Vehicle (UAV) is a challenging task due to the presence of non-stationary cameras in the system, dynamic motion of the moving target, and high-cost computation for real-time applications. In this paper, our aim is to automatically detect and track moving UAV by another one while simultaneously flying in the air. In order to provide efficiently in real-time applications, we develop a vision-based low-cost hardware system integrated with an independent ground control station. We initially created a new public dataset called ATAUAV that includes different types of UAV images obtained from videos recording in our experiments and searches on Google Images for the training process. Deep learning-based YOLOv3-Tiny (You Only Look Once) is used for target detection with the highest accuracy and fastest results. Kernelized Correlation Filter (KCF) adapted with YOLO, which runs on low-cost hardware, is used for real-time detected target tracking. We compared the performance of the proposed approach with different tracking algorithms. Experimental results show that the proposed approach provides the highest accuracy rate as 82.7% and a mean fps speed as 29.6 on CPU. The dataset can be downloaded at http://cogvi.atauni.edu.tr/ResearchLab/PageDetail/Our-ATAUAVs-Dataset-86.
- Published
- 2020
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- View/download PDF
90. A silent outbreak due to Klebsiella pneumoniae that co-produced NDM-1 and OXA-48 carbapenemases, and infection control measures
- Author
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Yucel Duman, Yasemin Ersoy, Nafia Gursoy, Sibel Altunisik Toplu, and Baris Otlu
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carbapenemase ,klebsiella pneumoniae ,ndm ,oxa-48 ,outbreak ,Medicine - Abstract
Objective(s): Infections due to carbapenemase-producing Klebsiella pneumoniae are associated with high morbidity and mortality. In this study, we report a hospital outbreak due to co-producing OXA-48 and NDM-1 K. pneumoniae clone. The aim of the study is to investigate the clonal relationship of strains, risk factors of outbreak and infection control measures.Materials and Methods: Once an outbreak was suspected at the end of December 2017 in our intensive care unit (ICU), carbapenem resistance K. pneumoniae identified in patients’ specimens. An outbreak analysis was begun to determine the risk factors and dissemination of the cases. A case-control study was conducted to determine the risk factors. To control the outbreak; tight contact prevention, good clean-up the medical devices and hospital environment, were done. Staff training programs such as hand hygiene, disinfection, wearing aprons, good cleaning were created. Carbapenem resistance genes determined by PCR. Clonal relationships of strains investigated by PFGE.Results: We investigate 21 carbapenem-resistant K. pneumonia strains. Nine of them were found co-produced NDM-1 and OXA-48, 11 strains produced OXA-48, and one strain produced NDM-1. Seven strains of co-producing NDM-1 and OXA-48 were found clonally related with PFGE. We could not determine any risk factor except rectal colonization in the case-control study.Conclusion: The interventions that successfully controlled this outbreak were hand hygiene, tight contact prevention, good clean-up of the hospital environment and medical devices. As a result, we believe that it would be beneficial to take infection control measures to prevent the spread of these strains to the community and hospital settings.
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- 2020
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91. The Evaluation of Thrombospondin 1 Levels in Patients with Acromegaly
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Mustafa Demirpençe, Hamiyet Yılmaz, Ayfer Çolak, Merve Zeytinli, Demet İnce, and Barış Önder Pamuk
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acromegaly ,thrombospondin ,colon cancer ,Medicine - Abstract
Introduction:Acromegaly is a rare disease caused by overproduction of growth hormone (GH) secreted from a benign pituitary adenoma. It has been shown in many studies that the incidence of cancer is increased in patients with acromegaly with increased GH and insulin-like growth factor-1 (IGF-1). Especially, colon cancer is more common. Thrombospondin-1 (TSP-1) is a glycoprotein that is thought to play an important role in cancer formation. This study aimed to evaluate circulating TSP-1 levels in patients with acromegaly.Methods:This study was a case-control study. Fifty-two patients with active acromegaly with GH
- Published
- 2020
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92. 3D Printing Technologies in Personalized Medicine, Nanomedicines, and Biopharmaceuticals
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Dolores R. Serrano, Aytug Kara, Iván Yuste, Francis C. Luciano, Baris Ongoren, Brayan J. Anaya, Gracia Molina, Laura Diez, Bianca I. Ramirez, Irving O. Ramirez, Sergio A. Sánchez-Guirales, Raquel Fernández-García, Liliana Bautista, Helga K. Ruiz, and Aikaterini Lalatsa
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personalized medicines ,3D printing ,FDM ,fuse deposition modelling ,SLA ,stereolithography ,Pharmacy and materia medica ,RS1-441 - Abstract
3D printing technologies enable medicine customization adapted to patients’ needs. There are several 3D printing techniques available, but majority of dosage forms and medical devices are printed using nozzle-based extrusion, laser-writing systems, and powder binder jetting. 3D printing has been demonstrated for a broad range of applications in development and targeting solid, semi-solid, and locally applied or implanted medicines. 3D-printed solid dosage forms allow the combination of one or more drugs within the same solid dosage form to improve patient compliance, facilitate deglutition, tailor the release profile, or fabricate new medicines for which no dosage form is available. Sustained-release 3D-printed implants, stents, and medical devices have been used mainly for joint replacement therapies, medical prostheses, and cardiovascular applications. Locally applied medicines, such as wound dressing, microneedles, and medicated contact lenses, have also been manufactured using 3D printing techniques. The challenge is to select the 3D printing technique most suitable for each application and the type of pharmaceutical ink that should be developed that possesses the required physicochemical and biological performance. The integration of biopharmaceuticals and nanotechnology-based drugs along with 3D printing (“nanoprinting”) brings printed personalized nanomedicines within the most innovative perspectives for the coming years. Continuous manufacturing through the use of 3D-printed microfluidic chips facilitates their translation into clinical practice.
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- 2023
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93. The Changeable Positioning of the Couch and Repositioning to Face-to-Face Arrangement in Psychoanalysis to Facilitate the Experience of Being Seen
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Bariş Önen Ünsalver, Alper Evrensel, Fatma Duygu Kaya Yertutanol, Aslihan Dönmez, and Mehmet Emin Ceylan
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gaze ,eye contact ,couch position ,object relations ,psychoanalysis ,Psychology ,BF1-990 - Published
- 2021
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94. Non-Conventional Time Domain (TD)-NMR Approaches for Food Quality: Case of Gelatin-Based Candies as a Model Food
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Sirvan Sultan Uguz, Baris Ozel, Leonid Grunin, Emin Burcin Ozvural, and Mecit H. Oztop
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soft candy ,gelatin ,confectionery ,TD-NMR ,crystallinity ,longitudinal relaxation time ,Organic chemistry ,QD241-441 - Abstract
The TD-NMR technique mostly involves the use of T1 (spin-lattice) and T2 (spin-spin) relaxation times to explain the changes occurring in food systems. However, these relaxation times are affected by many factors and might not always be the best indicators to work with in food-related TD-NMR studies. In this study, the non-conventional TD-NMR approaches of Solid Echo (SE)/Magic Sandwich Echo (MSE) and Spin Diffusion in food systems were used for the first time. Soft confectionary gelatin gels were formulated and conventional (T1) and non-conventional (SE, MSE and Spin Diffusion) TD-NMR experiments were performed. Corn syrups with different glucose/fructose compositions were used to prepare the soft candies. Hardness, °Brix (°Bx), and water activity (aw) measurements were also conducted complementary to NMR experiments. Relaxation times changed (p < 0.05) with respect to syrup type with no obvious trend. SE/MSE experiments were performed to calculate the crystallinity of the samples. Samples prepared with fructose had the lowest crystallinity values (p < 0.05). Spin Diffusion experiments were performed by using Goldman–Shen pulse sequence and the interface thickness (d) was calculated. Interface thickness values showed a wide range of variation (p < 0.05). Results showed that non-conventional NMR approaches had high potential to be utilized in food systems for quality control purposes.
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- 2022
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95. P2 Dopamine metabolism drives deletions of mitochondrial DNA, probably leading to dopaminergic neuron death during aging and Parkinson’s disease
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Neuhaus, J., primary, Baris, O., additional, Moser, N., additional, Schroeder, H., additional, and Wiesner, R.J., additional
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- 2011
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96. Study on antitumoral activity of some chemical compounds isolated from Origanum vulgare ssp. vulgare
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Guvenalp, Z, primary, Turan, M, additional, Sümer, Z, additional, Güllüce, M, additional, Ozbek, H, additional, Baris, O, additional, Orhan, F, additional, and Demirezer, L, additional
- Published
- 2010
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97. Contralateral Limberg flap reconstruction for pilonidal disease recurrence
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Barış Özcan and Özer İlkgül
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Surgery ,RD1-811 - Abstract
Summary: To identify surgical techniques applied in case of recurrence in patients with pilonidal sinus, who have undergone primary treatment with Limberg flap, and to present our cases treated with Limberg flap reconstruction prepared from the contralateral gluteal region. Nine patients with recurrence out of 219 patients who underwent Limberg flap reconstruction between 2009 and 2016 at our clinics, and 6 patients who have been referred to our clinics with total 15 recurrence after primary Limberg flap reconstruction at other institutes were included in the study. Total excision and primary repair was applied in 3 patients while 2 patients underwent excision with lay open procedures. The remaining 10 patients underwent rhomboid excision of the recurrence area and Limberg flap repair from the contralateral gluteal area. All patients who underwent primary repair or excision-lay open procedures recurred again. These two patients also underwent contralateral Limberg flap reconstruction as their second revision surgery. There were no complications or recurrences in the study group. We believe that reconstruction with contralateral Limberg flap is an effective and feasible method in recurrent pilonidal sinus cases who have been initially treated surgically by the Limberg flap. Keywords: Pilonidal sinus, Limberg flap, Recurrence, Contralateral
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- 2019
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98. Apelin: A potential novel serum biomarker for early detection of diabetic nephropathy in patients with type 2 diabetes
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Muhammed Mustafa Demirpençe, Hamiyet Yilmaz, Ayfer Çolak, Baris Onder Pamuk, İnanç Karakoyun, and Banu Basok
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apelin ,diabetic nephropathy ,urine protein: creatinine ratio. ,Medicine ,Medicine (General) ,R5-920 - Abstract
INTRODUCTION[|]Diabetic nephropathy (DN) is the major cause of chronic renal failure, and proteinuria is an independent risk factor for the end stage renal disease. The random urine protein: creatinine ratio (P: C ratio) can accurately predict the amount of 24-hour urinary protein excretion. Apelin is thought to be associated with endothelial dysfunction, angiogenesis, and inflammation. This study investigated the apelin concentration and its association with the urine P: C ratio, and metabolic parameters in subjects with and without type 2 diabetes mellitus (T2D).[¤]METHODS[|]This study involved 86 subjects: 56 with newly diagnosed and untreated T2D and 30 non-diabetic controls. All subjects underwent a complete clinical examination that included anthropometric and laboratory measurements.[¤]RESULTS[|]Twenty-four males and sixty-two females participated in this study, and their mean age was 52.27+-11.34 years. There were no differences in age, thyrotropin-stimulating hormone (TSH), creatinine clearance, and apelin levels between groups. As expected, fasting plasma glucose, weight, body mass index, and HbA1C were higher in T2D subjects (p=0.001, p=0.02, p=0.03, and p=0.001, respectively). Although apelin levels were higher in the control group, the differences were not statistically significant (p=0.93). The P: C ratio levels were lower in the control group, and the differences were statistically significant (p=0.006). A Spearman correlation analysis revealed that serum apelin levels were not correlated with the urine P: C ratio.[¤]DISCUSSION AND CONCLUSION[|]Our study demonstrates that T2D is associated with decreased serum apelin levels and increased urine P: C ratios compared to those in non-diabetic subjects. This association may depend on impaired glucose homeostasis. Our results show that the serum apelin levels were not correlated with the urine protein: creatinine ratio and provide further evidence regarding the relationship between apelin and DN.[¤]
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- 2019
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99. Haber Gazetesi’ne Göre Samsun’da Spor Hayatı (1924-1925)
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Barış Özinan
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samsun ,spor ,haber gazetesi ,i̇dman cemiyetleri ,1924- 1925 ,History (General) and history of Europe ,Political science (General) ,JA1-92 - Abstract
Çalışmanın amacı, Cumhuriyetin ilk yıllarında (1924 – 1925) Samsun’da spor hayatının çeşitli yönlerini ortaya koymaktır. Bu amaçla; yapılan spor faaliyetleri, faaliyetlerin gerçekleştiği mekânlar, sporu yöneten üst kurumsal yapı, idman dernekleri, kulüplerin geçim kaynakları, yapılan seyahatler, kulüpler arası karşılaşmalar ve spor kulüplerinin sosyal hayat açısından önemi üzerinde durulmuştur. Araştırma yapılırken müracaat edilen ana kaynak Haber gazetesinin nüshaları olmuştur. Cumhuriyet Hükümeti’nin spora bakışı, Türkiye Cumhuriyeti Cumhurbaşkanlığı Devlet Arşivleri Başkanlığı Cumhuriyet Arşivi’nden yararlanılarak tespit edilmiştir. Türk sporunun kurumsal üst yapısı ile ilgili bilgilere, doktora tezleri, kitaplar ve makalelerden yararlanılarak ulaşılmıştır.
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- 2019
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100. Yeni Sağ ve Avrupa Birliği Politikaları Perspektifinde Kuzey Kıbrıs Türk Cumhuriyeti’nde Planlamada Yaşanan Dönüşüm
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Şifa Çolakoğlu and Barış Övgün
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turkish republic of northern cyprus (trnc) ,planning ,developing ,spo ,kktc ,planlama ,kalkınma ,dpö ,dpt ,Political science ,Political science (General) ,JA1-92 - Abstract
Kuzey Kıbrıs Türk Cumhuriyeti’nde (KKTC) planlamanın örgütlenmesi veişleyişi Türkiye’deki planlamanın örgütlenmesi ve işleyişiyle büyük benzerliklertaşımaktadır. 1976 yılında Türkiye’deki Devlet Planlama Teşkilatı örnek alınarakulusal planlama örgütü olarak Devlet Planlama Örgütü (DPÖ) kurulmuştur. Ancak1980’lerde yükselişe geçen, neo-liberalizm olgusu ve rekabet ilkesi üzerine kurulanserbest piyasa sistemi, gerek Türkiye Cumhuriyeti gerekse KKTC’deki planlamaanlayışında önemli değişiklikler getirmiştir. Kuzey Kıbrıs’taki etkisi 2000’lerdenitibaren Avrupa Birliği katılım süreci ile belirgin olarak hissedilen bu yeni planlamaanlayışı, DPÖ’nün işlevinde önemli dönüşümlere yol açmıştır. Bu çalışmadaamaçlanan, DPÖ’nün planlama anlayışının Kıbrıs’ın kendine özgü yönetsel,ekonomik ve siyasal yapısından kaynaklanan bazı farklılıklara sahip olmasınarağmen Türkiye’deki kalkınma planlaması uygulamasının merkezinde yer alanDPT’nin yapısı, işleyişi ve dönüşümüyle büyük benzerlik taşıdığını ortaya koymaktır.
- Published
- 2019
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- View/download PDF
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