Search

Laser ablation in combination with an inductively coupled plasma time-of-flight mass spectrometer (LA-ICP-TOFMS) is an upcoming method for rapid quantitative element mapping of various samples. While widespread in geological applications, quantification of elements in biotissues remains challenging. In this study, a proof-of-concept sample preparation method is presented in which plant-tissues are fossilized in order to solidify the complex biotissue matrix into a mineral-like matrix. This process enables quantification of elements by using silicone as an internal standard for normalization while also providing consistent ablation processes similar to minerals to reduce image blurring. Furthermore, it allows us to generate a quantitative image of the element composition at high spatial resolution. The feasibility of the approach is demonstrated on leaves of sunflowers ( Helianthus annuus ), soy beans ( Glycine max ), and corn ( Zea mays ) as representatives for common crops, which were grown on both nonspiked and cadmium-spiked agricultural soil. The quantitative results achieved during imaging were validated with digestion of whole leaves followed by ICP-OES analysis. LA-ICP-TOFMS element mapping of conventionally dried samples can provide misleading trends due to the irregular ablation behavior of biotissue because high signals caused by high ablation rates are falsely interpreted as enrichment of elements. Fossilization provides the opportunity to correct such phenomena by standardization with Si as an internal standard. The method demonstrated here allows for quantitative image acquisition without time-consuming sample preparation steps by using comparatively safe chemicals. The diversity of tested samples suggests that this sample preparation method is well-suited to achieve reproducible and quantitative element maps of various plant samples.

The use of hydrocarbon-based proton conducting membranes in fuel cells is currently hampered by the insufficient durability of the material in the device. Membrane aging is triggered by the presence of reactive intermediates, such as HO⋅, which attack the polymer and eventually lead to chain breakdown and membrane failure. An adequate antioxidant strategy tailored towards hydrocarbon-based ionomers is therefore imperative to improve membrane lifetime. In this work, we perform studies on reaction kinetics using pulse radiolysis and γ-radiolysis as well as fuel cell experiments to demonstrate the feasibility of increasing the stability of hydrocarbon-based membranes against oxidative attack by implementing a Nature-inspired antioxidant strategy. We found that metalated-porphyrins are suitable for damage transfer and can be used in the fuel cell membrane to reduce membrane aging with a low impact on fuel cell performance., (© 2023 The Authors. ChemSusChem published by Wiley-VCH GmbH.)

Herein, we introduce an electrochemically assisted generation of nitryl radicals from ferric nitrate under mild reaction conditions using a simple setup with inexpensive graphite and stainless-steel electrodes. The mechanism of the reaction is supported by detailed spectroscopic and experimental studies. Powered by electricity and driven by electrons, the synthetic diversity of this reaction has been demonstrated through the development of highly efficient nitration protocols of various unsaturated hydrocarbons. In addition to a broad application area, these protocols are easy to scale for decagram quantities, and exhibit exceptional substrate generality and functional-group compatibility., (© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

Four benzylic-type quaternary ammonium (QA) compounds with different electron density at the phenyl group were evaluated for their susceptibility against degradation by radicals. Time-resolved absorption spectroscopy indicated that radicals with oxidizing and reducing character were formed upon oxidation by HO⋅ and O⋅ - (conjugate base of HO⋅). It was estimated that, dependent on the QA, 18-41 % of the formed radicals were oxidizing with standard electrode potentials (E 0 ) above 0.276 V and 13-23 % exceeded 0.68 V, while 13-48 % were reducing with E 0 <-0.448 V. The stability of these model compounds against oxidation and reductive dealkylation was evaluated at both neutral and strongly alkaline conditions, pH 14. Under both conditions, electron-donating groups promoted radical degradation, while electron-withdrawing ones increased stability. Therefore, durability against radical-induced degradation shows an opposite trend to alkaline stability and needs to be considered during the rational design of novel anion-exchange membranes for fuel cells and electrolyzers., (© 2022 The Authors. ChemSusChem published by Wiley-VCH GmbH.)

Sulfonated aromatic hydrocarbon-based ionomers are potential constituents of next-generation polymer electrolyte fuel cells (PEFCs). Widespread application is currently limited due to their susceptibility to radical-initiated oxidative degradation that, among other intermediates, involves the formation of highly reactive aromatic cation radicals. The intermediates undergo chain cleavage (dealkylation/dearylation) and the loss of protogenic sulfonate groups, all leading to performance loss and eventual membrane failure. Laser flash photolysis experiments indicated that cation radicals can also be formed via direct electron ejection. We aim to establish the major degradation pathway of proton-exchange membranes (PEMs). To this end, we irradiated aqueous solutions of phenyl sulfonate-type model compounds with a Xe arc lamp, thus generating radicals. The radicals were trapped by 5,5-dimethyl-1-pyrroline N -oxide (DMPO), and the formed adducts were observed by electron paramagnetic resonance (EPR). The formed DMPO spin adducts were assigned and relative adduct concentrations were quantified by simulation of the experimental EPR spectra. Through the formation of the DMPO/ • SO 3 - adduct, we established that desulfonation dominates for monoaromatic phenyl sulfonates. We observed that diaryl ether sulfonates readily undergo homolytic C-O scission that produces DMPO/ • aryl adducts. Our results support the notion that polyphenylene sulfonates are the most stable against oxidative attack and effectively transfer electrons from DMPO, forming DMPO/ • OH. Our findings help to identify durable moieties that can be used as building blocks in the development of next-generation PEMs., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)

Highly reactive aromatic cation radicals have been invoked lately in synthetic routes and in the degradation pathways of hydrocarbon-based polymers. Changes in the electron density of aromatic compounds are expected to alter the reaction pathway following one electron oxidation through altering the p K a of the formed intermediate cation radical. Electron-donating groups increase its stability, however, little experimental data are known. While, in theory, the cation radical can be repaired by simple electron transfer, electron transfer to or from its deprotonated form, the hydroxycyclohexadienyl radical, will cause permanent modification or degradation. Time-resolved absorption spectroscopy indicates a p K a ≈ 2-3 for the 4-( tert -butyl)-2-methoxyphenylsulfonate (BMPS) radical cation, while its parent compound 4-( tert -butyl) phenylsulfonate (BPS) is much more acidic. The stability of both compounds towards oxidation by HO˙ was evaluated under air at pH 5 and pH 0. At pH 5, both BMPS and BPS are unstable, and superstoichiometric degradation was observed. Degradation was slightly reduced for BPS at pH 0. In contrast, the more electron rich BMPS showed 80% lower degradation. We unambigously showed that in the presence of Ce(III) and H 2 O 2 at pH 0 both BMPS and BPS could be catalytically repaired via one electron reduction, resulting in further damage moderation.

Ionizing radiations cause chemical damage to proteins. In aerobic aqueous solutions, the damage is commonly mediated by the hydroxyl free radicals generated from water, resulting in formation of protein radicals. Protein damage is especially significant in biological systems, because proteins are the most abundant targets of the radiation-generated radicals, the hydroxyl radical-protein reaction is fast, and the damage usually results in loss of their biological function. Under physiological conditions, proteins are initially oxidized to carbon-centered radicals, which can propagate the damage to other molecules. The most effective endogenous antioxidants, ascorbate, GSH, and urate, are unable to prevent all of the damage under the common condition of oxidative stress. In a promising development, recent work demonstrates the potential of polyphenols, their metabolites, and other aromatic compounds to repair protein radicals by the fast formation of less damaging radical adducts, thus potentially preventing the formation of a cascade of new reactive species.

The negative correlation between diets rich in fruits and vegetables and the occurrence of cardiovascular disease, stroke, cancer, atherosclerosis, cognitive impairment and other deleterious conditions is well established, with flavonoids and other polyphenols held to be partly responsible for the beneficial effects. Initially, these effects were explained by their antioxidant ability, but the low concentrations of polyphenols in tissues and relatively slow reaction with free radicals suggested that, instead, they act by regulating cell signalling pathways. Here we summarise results demonstrating that the abandonment of an antioxidant role for food polyphenols is based on incomplete knowledge of the mechanism of the polyphenol-free radical reaction. New kinetic measurements show that the reaction is up to 1000 times faster than previously reported and lowers the damaging potential of the radicals. The results also show that the antioxidant action does not require phenolic groups, but only a carbon-centred free radical and an aromatic molecule. Thus, not only food polyphenols but also many of their metabolites are effective antioxidants, significantly increasing the antioxidant protection of cells and tissues. By restoring an important antioxidant role for food polyphenols, the new findings provide experimental support for the advocacy of diets rich in plant-derived food.

Well-defined fullerene-PEG conjugates, C 60 -PEG ( 1 ) and two C 70 -PEG ( 2 and 3 with the addition sites on ab- [6,6] and cc- [6,6]-junctions), were prepared from their corresponding Prato monoadduct precursors. The resulting highly water-soluble fullerene-PEG conjugates 1 - 3 were evaluated for their DNA-cleaving activities and reactive oxygen species (ROS) generation under visible light irradiation. Unexpectedly, photoinduced cleavage of DNA by C 60 -PEG 1 was much higher than that by C 70 -PEG 2 and 3 with higher absorption intensity, especially in the presence of an electron donor (NADH). The preference of photoinduced ROS generation from fullerene-PEG conjugates 1 - 3 via the type II (energy transfer) or the type I (electron transfer) photoreaction was found to be dependent on the fullerene core (between C 60 and C 70 ) and functionalization pattern of C 70 (between 2 and 3 ). This was clearly supported by the electron transfer rate obtained from cyclic voltammetry data and computationally estimated relative rate of each step of the type II and the type I reactions, with the finding that type II energy transfer reactions occurred in the inverted Marcus regime while type I electron transfer reactions proceeded in the normal Marcus regime. This finding on the disparity in the pathways of photoinduced reactions ( type I versus type II ) provides insights into the behavior of photosensitizers in water and the design of photodynamic therapy drugs., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)

Several recent studies have shown that the rates of formation of adduct radicals between carbon-centred radicals and aromatic molecules are virtually diffusion-controlled and reversible. This contrasts with "radical addition", the well-known multistep reaction in preparative organic chemistry where the rate-determining initial formation of radical adducts is perceived to be several orders of magnitude slower and virtually irreversible. Using pulse radiolysis and spectroscopic analysis, we have now re-examined parts of this complex mechanism. The results have significant implications for biological systems: electron-rich, aromatic structures may act like buffers for radicals, moderating their reactivity resulting in a much slower reaction determining the overall rate of oxidation. In vivo, an organism would gain time for an appropriate antioxidant reaction.

Chemistry describes transformation of matter with reaction equations and corresponding rate constants. However, accurate rate constants are not always easy to get. Here we focus on radical oxidation reactions. Analysis of over 500 published rate constants of hydroxyl radicals led us to hypothesize that a modified linear free-energy relationship (LFER) could be used to predict rate constants speedily, reliably and accurately. LFERs correlate the Gibbs activation-energy with the Gibbs energy of reaction. We calculated the latter as the sum of one-electron transfer and, if appropriate, proton transfer. We parametrized specific transition state effects to orbital delocalizability and the polarity of the reactant. The calculation time for 500 reactions is less than 8 hours on a standard desktop-PC. Rate constants were also calculated for hydrogen and methyl radicals; these controls show that the predictions are applicable to a broader set of oxidizing radicals. An accuracy of 30-40% (standard deviation) with reference to reported experimental values was found suitable for the screening of complex chemical systems for possibly relevant reactions. In particular, potentially relevant reactions can be singled out and scrutinized in detail when prioritizing chemicals for environmental risk assessment.

Herein, the synthesis and characterization of a hypervalent-iodine-based reagent that enables a direct and selective nitrooxylation of enolizable C-H bonds to access a broad array of organic nitrate esters is reported. This compound is bench stable, easy-to-handle, and delivers the nitrooxy (-ONO 2 ) group under mild reaction conditions. Activation of the reagent by Brønsted and Lewis acids was demonstrated in the synthesis of nitrooxylated β-keto esters, 1,3-diketones, and malonates, while its activity under photoredox catalysis was shown in the synthesis of nitrooxylated oxindoles. Detailed mechanistic studies including pulse radiolysis, Stern-Volmer quenching studies, and UV/Vis spectroelectrochemistry reveal a unique single-electron-transfer (SET)-induced concerted mechanistic pathway not reliant upon generation of the nitrate radical., (© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

In biology, the reaction of ONOO - with CO 2 is the main sink for ONOO - . This reaction yields CO 3 •- , NO 2 • , NO 3 - , and CO 2 . There is a long-standing debate with respect to the yield of the radicals relative to ONOO - . The reaction of ONOO - with CO 2 results at first in ONOOCO 2 - . According to one hypothesis, ONOOCO 2 - is extremely short-lived and devolves into a solvent cage that contains CO 3 •- and NO 2 • . Of these solvent cages, approximately two/thirds result in NO 3 - and CO 2 , and approximately one/third release CO 3 •- and NO 2 • that oxidize the substrate. According to our hypothesis, ONOOCO 2 - is formed much faster, is relatively long-lived, and may also be an oxidant; the limited yield is the result of ONOOCO 2 - being scavenged by a second CO 2 under conditions of a high CO 2 concentration. We disagree with the first hypothesis for three reasons: First, it is based on an estimated K for the reaction of ONOO - with CO 2 to form ONOOCO 2 - of ∼1 M -1 , while experiments yield a value of 4.5 × 10 3 M -1 . Second, we argue that the solvent cage as proposed is physically not realistic. Given the less than diffusion-controlled rate constant of CO 3 •- with NO 2 • , all radicals would escape from the solvent cage. Third, the reported ∼33% radical is not supported by an experiment where mass balance was established. We propose here a hybrid mechanism. After formation of ONOOCO 2 - , it undergoes homolysis to yield CO 3 •- with NO 2 • , or, depending on [CO 2 ], it is scavenged by a second CO 2 ; CO 3 •- oxidizes ONOO - , if present. These reactions allow us to successfully simulate the reaction of ONOO - with CO 2 over a wide range of ONOO - /CO 2 ratios. At lower ratios, fewer radicals are formed, while at higher ratios, radical yields between 30% and 40% are predicted. The differences in radical yields reported may thus be traced to the experimental ONOO - /CO 2 ratios. Given a physiological [CO 2 ] of 1.3 mM, the yield of CO 3 •- and NO 2 • is 19%, and lower if ONOOCO 2 - has a significant reactivity of its own.

Both synthetic polymers (membranes, coatings, packaging) and natural polymers (DNA, proteins) are subject to radical-initiated degradation. In order to mitigate the deterioration of the polymer properties, antioxidant strategies need to be devised. We studied the reactions of poly(α-methylstyrene sulfonate), a model compound for fuel cell membrane materials, with different degrees of polymerization with OH˙ radicals as well as subsequent reactions. We observed the resulting OH˙-adducts to react with oxygen and eliminate H 2 O, the relative likelihood of which is determined by pH and molecular weight. The resulting radical cations can be reduced back to the parent molecule by cerium(iii). This 'repair' reaction is also dependent on molecular weight likely because of intramolecular stabilization. The results from this study provide a starting point for the development of new hydrocarbon-based ionomer materials for fuel cells that are more resistant to radical induced degradation through the detoxification of intermediates via damage transfer and repair pathways. Furthermore, a more fundamental understanding of the mechanisms behind conventional antioxidants in medicine, such as ceria nanoparticles, is achieved.

Known endogenous antioxidants are unlikely to prevent radical damage due to oxidative stress or achieve complete repair by established reaction mechanisms. While near complete prevention seems very unrealistic, some of the initial damage can be repaired. Depending on tissue, this may be even a large fraction. Antioxidants, however, will efficiently break radical reaction chains and, therefore, certainly limit the damage caused by radicals. It is not clear if chemical antioxidant action is strictly limited to electron-transfer processes or if additional reaction mechanisms may contribute., (© 2020 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.)

The oxidative activation of the perfluorinated analogue of dimethyl sulfoxide, DMSO-F 6 , by hydroxyl radicals efficiently produces trifluoromethyl radicals based on pulse radiolysis, laboratory scale experiments, and comparison of rates of reaction for analogous radical systems. In comparison to commercially available precursors, DMSO-F 6 proved to be more stable, easier to handle and overall more convenient than leading F 3 C-reagents and may therefore be an ideal surrogate to study F 3 C radicals for time-resolved kinetics studies. In addition, we present an improved protocol for the preparation of this largely unexplored reagent.

Many theoretical and experimental studies have shown that the principal initial biological targets of free radicals are nucleic acids, lipids and proteins. The reaction normally generates carbon-centered radicals which can propagate molecular damage either directly or after formation of new reactive species following reaction with oxygen. Overall damage prevention is therefore best achieved by repair of the carbon radicals before they initiate further reactions. Recent studies have shown that the repair cannot be achieved by normal levels of the endogenous antioxidants glutathione, ascorbate or urate. Since their concentrations are well regulated and cannot be enhanced by oral intake, we have investigated the effectiveness of flavonoids and other polyphenols as potential carbon radical repair agents, because their levels in vivo can be significantly enhanced by diet. Pulse radiolysis measurements of the rate constants of repair of amino acid radicals by several polyphenols showed reversible formation of radical-polyphenol adducts 100-1000 times faster than previously reported for the bimolecular stoichiometric reactions of flavonoids i.e. with rate constants in the order of 10 10  M -1 s -1 . Adduct formation depended only on the presence of a carbon-centered radical and an aromatic moiety in the reactants, without the involvement of redox reactions at the phenolic groups. Formation of adducts lowered the reactivity of the radicals. Our results suggest that flavonoids, polyphenols and many of their metabolites can effectively reduce the damaging potential of carbon radicals at concentrations achievable in vivo by diets rich in fruits and vegetables., (Copyright © 2019 Elsevier Inc. All rights reserved.)

Cytochrome P450cam (CYP101Fe 3+ ) regioselectively hydroxylates camphor. Possible hydroxylating intermediates in the catalytic cycle of this well-characterized enzyme have been proposed on the basis of experiments carried out at very low temperatures and shunt reactions, but their presence has not yet been validated at temperatures above 0 °C during a normal catalytic cycle. Here, we demonstrate that it is possible to mimic the natural catalytic cycle of CYP101Fe 3+ by using pulse radiolysis to rapidly supply the second electron of the catalytic cycle to camphor-bound CYP101[FeO 2 ] 2+ Judging by the appearance of an absorbance maximum at 440 nm, we conclude that CYP101[FeOOH] 2+ (compound 0) accumulates within 5 μs and decays rapidly to CYP101Fe 3+ , with a k 440 nm of 9.6 × 10 4 s -1 All processes are complete within 40 μs at 4 °C. Importantly, no transient absorbance bands could be assigned to CYP101[FeO 2+ por •+ ] (compound 1) or CYP101[FeO 2+ ] (compound 2). However, indirect evidence for the involvement of compound 1 was obtained from the kinetics of formation and decay of a tyrosyl radical. 5-Hydroxycamphor was formed quantitatively, and the catalytic activity of the enzyme was not impaired by exposure to radiation during the pulse radiolysis experiment. The rapid decay of compound 0 enabled calculation of the limits for the Gibbs activation energies for the conversions of compound 0 → compound 1 → compound 2 → CYP101Fe 3+ , yielding a Δ G ‡ of 45, 39, and 39 kJ/mol, respectively. At 37 °C, the steps from compound 0 to the iron(III) state would take only 4 μs. Our kinetics studies at 4 °C complement the canonical mechanism by adding the dimension of time., (© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.)

We present an experimental electrophilicity index (ϻ) for the classification of radicals. The ϻ-scale is based on the equilibrium constant determined for the reversible addition of a radical R . to an aromatic radicophile (HisNH 2 ). This experimental approach is in excellent agreement with the computed global electrophilicity index ω and serves to validate the latter., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Reaction kinetics of amino acid and peptide alkyl radicals with GSH and ascorbate, the two most abundant endogenous antioxidants, were investigated by pulse radiolysis. Rate constants in the order of 10 6  M -1 s -1 were found. Alkyl radicals react at almost diffusion controlled rates and irreversibly with oxygen to form peroxyl radicals, and competition with this reaction is the benchmark for efficient repair in vivo. We consider repair of protein radicals and assume comparable rate constants for the reactions of GSH/ascorbate with peptide alkyl radicals and with alkyl radicals on a protein surface. Given physiological concentrations of oxygen, GSH and ascorbate, protein peroxyl radicals will always be a major product of protein alkyl radicals in vivo. Therefore, if they are formed by oxidative stress, protein alkyl radicals are a probable cause for biological damage., (Copyright © 2017 Elsevier Inc. All rights reserved.)

The principal initial biological targets of free radicals formed under conditions of oxidative stress are the proteins. The most common products of the interaction are carbon-centered alkyl radicals which react rapidly with oxygen to form peroxyl radicals and hydroperoxides. All these species are reactive, capable of propagating the free radical damage to enzymes, nucleic acids, lipids, and endogenous antioxidants, leading finally to the pathologies associated with oxidative stress. The best chance of preventing this chain of damage is in early repair of the protein radicals by antioxidants. Estimate of the effectiveness of the physiologically significant antioxidants requires knowledge of the antioxidant tissue concentrations and rate constants of their reaction with protein radicals. Previous studies by pulse radiolysis have shown that only ascorbate can repair the Trp and Tyr protein radicals before they form peroxyl radicals under physiological concentrations of oxygen. We have now extended this work to other protein C-centered radicals generated by hydroxyl radicals because these and many other free radicals formed under oxidative stress can produce secondary radicals on virtually any amino acid residue. Pulse radiolysis identified two classes of rate constants for reactions of protein radicals with ascorbate, a faster one in the range (9-60) × 10 7 M -1 s -1 and a slow one with a range of (0.5-2) × 10 7 M -1 s -1 . These results show that ascorbate can prevent further reactions of protein radicals only in the few human tissues where its concentration exceeds about 2.5 mM.

Herein we investigate the propensity of hypervalent iodine based electrophilic trifluoromethylating agents to undergo thermally induced fragmentation of the F 3 C-I-O motif. For the first time we are able to observe a dissociative electron transfer mechanism using mass spectroscopy techniques to generate and trap CF 3 radicals. Consistent with this mechanism, alkyl radical elimination from these reagents is in full support of an intermediate cyclic iodanyl radical and a reagent-specific temperature of maximum radical production was found to correlate with reported solution phase reactivity.

Dendronized polymers exhibit defined structures with bulky side chains (dendrons) on a linear polymer backbone. Upon reaction with radicals, chromophores close to the backbone were bleached. The reaction rate and yield decreased with increasing dendron size, demonstrating that the inside of dendronized polymers can be "shielded" by bulky dendrons from access by reactive species.

Electrode potentials for aromatic amino acid radical/amino acid couples were deduced from cyclic voltammograms and pulse radiolysis experiments. The amino acids investigated were l-tryptophan, l-tyrosine, N-acetyl-l-tyrosine methyl ester, N-acetyl-3-nitro-l-tyrosine ethyl ester, N-acetyl-2,3-difluoro-l-tyrosine methyl ester, and N-acetyl-2,3,5-trifluoro-l-tyrosine methyl ester. Conditional potentials were determined at pH 7.4 for all compounds listed; furthermore, Pourbaix diagrams for l-tryptophan, l-tyrosine, and N-acetyl-3-nitro-l-tyrosine ethyl ester were obtained. Electron transfer accompanied by proton transfer is reversible, as confirmed by detailed analysis of the current waves, and because the slopes of the Pourbaix diagrams obey Nernst's law. E°'(Trp(•),H(+)/TrpH) and E°'(TyrO(•),H(+)/TyrOH) at pH 7 are 0.99 ± 0.01 and 0.97 ± 0.01 V, respectively. Pulse radiolysis studies of two dipeptides that contain both amino acids indicate a difference in E°' of approximately 0.06 V. Thus, in small peptides, we recommend values of 1.00 and 0.96 V for E°'(Trp(•),H(+)/TrpH) and E°'(TyrO(•),H(+)/TyrOH), respectively. The electrode potential of N-acetyl-3-nitro-l-tyrosine ethyl ester is higher, while because of mesomeric stabilization of the radical, those of N-acetyl-2,3-difluoro-l-tyrosine methyl ester and N-acetyl-2,3,5-trifluoro-l-tyrosine methyl ester are lower than that of tyrosine. Given that the electrode potentials at pH 7 of E°'(Trp(•),H(+)/TrpH) and E°'(TyrO(•),H(+)/TyrOH) are nearly equal, they would be, in principle, interchangeable. Proton-coupled electron transfer pathways in proteins that use TrpH and TyrOH are thus nearly thermoneutral.

Protein thiyl radicals are important intermediates generated in redox processes of thiols and disulfides. Thiyl radicals efficiently react with glutathione and ascorbate, and the common notion is that these reactions serve to eliminate thiyl radicals before they can enter potentially hazardous processes. However, over the past years increasing evidence has been provided for rather efficient intramolecular hydrogen transfer processes of thiyl radicals in proteins and peptides. Based on rate constants published for these processes, we have performed kinetic simulations of protein thiyl radical reactivity. Our simulations suggest that protein thiyl radicals enter intramolecular hydrogen transfer reactions to a significant extent even under physiologic conditions, i.e., in the presence of 30 µM oxygen, 1 mM ascorbate, and 10 mM glutathione. At lower concentrations of ascorbate and glutathione, frequently observed when tissue is exposed to oxidative stress, the extent of irreversible protein thiyl radical-dependent protein modification increases., (Copyright © 2014 Elsevier Inc. All rights reserved.)

Carbon-centered radicals of alcohols commonly used as hydroxyl radical scavengers (MeOH, EtOH, i-PrOH and t-BuOH) add reversibly to histidine with equilibrium constants up to 3 × 10(3) M(-1) and rate constants on the order of 10(9) M(-1) s(-1). Similar equilibria may compromise determinations of one-electron (radical) electrode potentials.

Thioredoxin reductases, important biological redox mediators for two-electron transfers, contain either 2 cysteines or a cysteine (Cys) and a selenocysteine (Sec) at the active site. The incorporation of Sec is metabolically costly, and therefore surprising. We provide here a rationale: in the case of an accidental one-electron transfer to a S-S or a S-Se bond during catalysis, a thiyl or a selanyl radical, respectively would be formed. The thiyl radical can abstract a hydrogen from the protein backbone, which subsequently leads to the inactivation of the protein. In contrast, a selanyl radical will not abstract a hydrogen. Therefore, formation of Sec radicals in a GlyCysSecGly active site will less likely result in the destruction of a protein compared to a GlyCysCysGly active site.

Tyrosine (Tyr) residues are major sites of radical generation during protein oxidation. We used insulin as a model to study the kinetics, mechanisms, and products of the reactions of radiation-induced or enzyme-generated protein-tyrosyl radicals with superoxide to demonstrate the feasibility of these reactions under oxidative stress conditions. We found that insulin-tyrosyl radicals combined to form dimers, mostly via the tyrosine at position 14 on the α chain (Tyr14). However, in the presence of superoxide, dimerization was largely outcompeted by the reaction of superoxide with insulin-tyrosyl radicals. Using pulse radiolysis, we measured a second-order rate constant for the latter reaction of (6±1) × 10(8) M(-1) s(-1) at pH 7.3, representing the first measured rate constant for a protein-tyrosyl radical with superoxide. Mass-spectrometry-based product analyses revealed the addition of superoxide to the insulin-Tyr14 radical to form the hydroperoxide. Glutathione efficiently reduced the hydroperoxide to the corresponding monoxide and also subsequently underwent Michael addition to the monoxide to give a diglutathionylated protein adduct. Although much slower, conjugation of the backbone amide group can form a bicyclic Tyr-monoxide derivative, allowing the addition of only one glutathione molecule. These findings suggest that Tyr-hydroperoxides should readily form on proteins under oxidative stress conditions where protein radicals and superoxide are both generated and that these should form addition products with thiol compounds such as glutathione., (Copyright © 2014 Elsevier Inc. All rights reserved.)

Macromolecular hybrid structures were prepared in which two types of enzymes, horseradish peroxidase (HRP) and bovine erythrocytes Cu,Zn-superoxide dismutase (SOD), were linked to a fluorescently labeled, polycationic, dendronized polymer (denpol). Two homologous denpols of first and second generation were used and compared, and the activities of HRP and SOD of the conjugates were measured in aqueous solution separately and in combination. In the latter case the efficiency of the two enzymes in catalyzing a two-step cascade reaction was evaluated. Both enzymes in the two types of conjugates were highly active and comparable to free enzymes, although the efficiency of the enzymes bound to the second-generation denpol was significantly lower (up to a factor of 2) than the efficiency of HRP and SOD linked to the first-generation denpol. Both conjugates were analyzed by atomic force microscopy (AFM), confirming the expected increase in object size compared to free denpols and demonstrating the presence of enzyme molecules localized along the denpol chains. Finally, giant phospholipid vesicles with diameters of up to about 20 μm containing in their aqueous interior pool a first-generation denpol-HRP conjugate were prepared. The HRP of the entrapped conjugate was shown to remain active toward externally added, membrane-permeable substrates, an important prerequisite for the development of vesicular multienzyme reaction systems.

The isomerisation of ONOOH to NO(3)(-) and H(+), some oxidations and all hydroxylations and nitrations of aromatic compounds are first-order in ONOOH and zero-order in the compounds that are modified. These reactions are widely believed to proceed via homolysis of ONOOH into HO˙ and NO(2)˙ to an extent of ca. 30%. We review the evidence pro and contra homolysis in studies that involve (1) thermochemical considerations, (2) isomerisation to NO(3)(-) and H(+), (3) decomposition to NO(2)(-) and O(2), (4) HO˙ scavenger studies, (5) deuterium isotope effects, (6) (18)O-scrambling studies, (7) electrochemistry, (8) CIDNP NMR, and (9) photolysis. Our conclusion is that homolysis may be involved to a minor extent of ca. 5%. The initiation of ONOOH isomerisation may be visualised as an out-of-plane vibration of the terminal HO-group relative to the nitrogen. At ONOO(-) concentrations exceeding 0.1 mM and near neutral pH, disproportionation to NO(2)(-) and O(2) occurs; such disproportionations are typical for peroxy acids. For oxidation and nitration of organic substrates, we favour a mechanism involving initial formation of an adduct between the compound to be oxidised or nitrated and ONOOH.

Cysteine, cysteinyl-glycine, glutathione, phenylalanyl-cysteinyl-glycine, and histidyl-cysteinyl-glycine were dissolved in acidic and neutral D(2)O in the presence of the radical generator 2,2'-azobis(2-methylpropionamidine) dihydrochloride and radical mediator compounds (benzyl alcohol and 2-propanol). An exchange of H-atoms by D-atoms took place in these peptides due to intramolecular H-abstraction equilibria. NMR measurements allow one to follow the extent of H-D exchanges and to identify the sites where these exchanges take place. Significant exchanges occur in acidic media in GSH at positions Glu-β and Glu-γ, in Phe-Cys-Gly at positions Phe ortho, Phe-β, Cys-α, Cys-β, and Gly-α, and in His-Cys-Gly at positions His H1, His H2, His β, Cys β, and Gly α. In neutral media, exchanges occur in Cys-Gly at position Cys β and in GSH at position Cys α. Phe-Cys-Gly and His-Cys-Gly were not examined in neutral media. Sites participating in the radical exchange equilibria are highly dependent on structure and pH; the availability of electron density in the form of lone pairs appears to increase the extent of exchange. Interestingly, and unexpectedly, 2D NMR experiments show that GSH rearranges itself in acidic solution: the signals shift, but their patterns do not change. The formation of a thiolactone from Gly and Cys residues matches the changes observed.

Dihydrogen sulfide recently emerged as a biological signaling molecule with important physiological roles and significant pharmacological potential. Chemically plausible explanations for its mechanisms of action have remained elusive, however. Here, we report that H(2)S reacts with S-nitrosothiols to form thionitrous acid (HSNO), the smallest S-nitrosothiol. These results demonstrate that, at the cellular level, HSNO can be metabolized to afford NO(+), NO, and NO(-) species, all of which have distinct physiological consequences of their own. We further show that HSNO can freely diffuse through membranes, facilitating transnitrosation of proteins such as hemoglobin. The data presented in this study explain some of the physiological effects ascribed to H(2)S, but, more broadly, introduce a new signaling molecule, HSNO, and suggest that it may play a key role in cellular redox regulation.

A hybrid structure of a synthetic dendronized polymer, two different types of enzymes (superoxide dismutase and horseradish peroxidase), and a fluorescent dye (fluorescein) was synthesized. Thereby, a single polymer chain carried multiple copies of the two enzymes and the fluorescein. The entire attachment chemistry is based on UV/vis-quantifiable bis-aryl hydrazone bond formation that allows direct quantification of bound molecules: 60 superoxide dismutase, 120 horseradish peroxidase, and 20 fluorescein molecules on an average polymer chain of 2000 repeating units. To obtain other enzyme ratios the experimental conditions were altered accordingly. Moreover, it could be shown that both enzymes remained fully active and catalyzed a two-step cascade reaction.

The mercapto group of cysteine (Cys) is a predominant target for oxidative modification, where one-electron oxidation leads to the formation of Cys thiyl radicals, CysS(•). These Cys thiyl radicals enter 1,2- and 1,3-hydrogen transfer reactions, for which rate constants are reported in this paper. The products of these 1,2- and 1,3-hydrogen transfer reactions are carbon-centered radicals at position C(3) (α-mercaptoalkyl radicals) and C(2) ((•)C(α) radicals) of Cys, respectively. Both processes can be monitored separately in Cys analogues such as cysteamine (CyaSH) and penicillamine (PenSH). At acidic pH, thiyl radicals from CyaSH permit only the 1,2-hydrogen transfer according to equilibrium 12, (+)H(3)NCH(2)CH(2)S(• )⇌ (+)H(3)NCH(2)(•)CH-SH, where rate constants for forward and reverse reaction are k(12) ≈ 10(5) s(-1) and k(-12) ≈ 1.5 × 10(5)s(-1), respectively. In contrast, only the 1,3-hydrogen transfer is possible for thiyl radicals from PenSH according to equilibrium 14, ((+)H(3)N/CO(2)H)C(α)-C(CH(3))(2)-S(•) ⇌ ((+)H(3)N/CO(2)H)(•)C(α)-C(CH(3))(2)-SH, where rate constants for the forward and the reverse reaction are k(14) = 8 × 10(4) s(-1) and k(-14) = 1.4 × 10(6) s(-1). The (•)C(α) radicals from PenSH and Cys have the additional opportunity for β-elimination of HS(•)/S(•-), which proceeds with k(39) ≈ (3 ± 1) × 10(4) s(-1) from (•)C(α) radicals from PenSH and k(-34) ≈ 5 × 10(3) s(-1) from (•)C(α) radicals from Cys. The rate constants quantified for the 1,2- and 1,3-hydrogen transfer reactions can be used as a basis to calculate similar processes for Cys thiyl radicals in proteins, where hydrogen transfer reactions, followed by the addition of oxygen, may lead to the irreversible modification of target proteins.

Selenocysteine is present in a variety of proteins and catalyzes the oxidation of thiols to disulfides and the reduction of disulfides to thiols. Here, we compare the kinetic and thermodynamic properties of cysteine with its selenium-containing analogon, selenocysteine. Reactions of simple selenols at pH 7 are up to four orders of magnitude faster than their sulfur analogs, depending on reaction type. In redox-related proteins, the use of selenium instead of sulfur can be used to tune electrode, or redox, potentials. Selenocysteine could also have a protective effect in proteins because its one-electron oxidized product, the selanyl radical, is not oxidizing enough to modify or destroy proteins, whereas the cysteine-thiyl radical can do this very rapidly.