1. Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest.
- Author
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Kim KK, Lee KC, Eom MK, Kim JS, Kim DS, Ko SH, Kim BH, and Lee JS
- Subjects
- Bacterial Typing Techniques, Base Composition, Carbohydrates analysis, Cell Wall chemistry, Cluster Analysis, DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Diaminopimelic Acid analysis, Fatty Acids analysis, Forests, Gram-Negative Aerobic Rods and Cocci genetics, Gram-Negative Aerobic Rods and Cocci physiology, Korea, Molecular Sequence Data, Phospholipids analysis, Phylogeny, Quinones analysis, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Gram-Negative Aerobic Rods and Cocci classification, Gram-Negative Aerobic Rods and Cocci isolation & purification, Soil Microbiology
- Abstract
A novel bacterial strain designated GJW-30(T) was isolated from soil of the lava forest, Gotjawal, located in Aewol, Jeju, Korea. Strain GJW-30(T) was found to be strictly aerobic, Gram-negative and to form pleomorphic, non-motile rods and white colonies on R2A agar. The major fatty acids were identified as C18:1ω7c, C16:0 and C17:0, the predominant isoprenoid quinone as Q-10, the polar lipids as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified aminolipid and an unidentified lipid. The cell-wall sugar pattern of strain GJW-30(T) was found to be composed of glucose, ribose and rhamnose and meso-DAP as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content of strain GJW-30(T) is 62.2 mol%. Phylogenetic analysis, based on 16S rRNA gene sequence similarities, showed that strain GJW-30(T) forms a deep branch within the order Rhizobiales, sharing the highest level of sequence homology with Bradyrhizobium oligotrophicum LMG 10732(T) (93.6 %). On the basis of the phenotypic, chemotaxonomic and phylogenetic characteristics, strain GJW-30(T) is considered to represent a novel genus and species, for which the name Variibacter gotjawalensis gen. nov., sp. nov. (the type strain is GJW-30(T) = KCTC 32391(T) = CECT 8514(T) = LMG 28093(T)) is proposed.
- Published
- 2014
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