Back to Search
Start Over
Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest.
- Source :
-
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2014 May; Vol. 105 (5), pp. 915-24. Date of Electronic Publication: 2014 Mar 06. - Publication Year :
- 2014
-
Abstract
- A novel bacterial strain designated GJW-30(T) was isolated from soil of the lava forest, Gotjawal, located in Aewol, Jeju, Korea. Strain GJW-30(T) was found to be strictly aerobic, Gram-negative and to form pleomorphic, non-motile rods and white colonies on R2A agar. The major fatty acids were identified as C18:1ω7c, C16:0 and C17:0, the predominant isoprenoid quinone as Q-10, the polar lipids as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified aminolipid and an unidentified lipid. The cell-wall sugar pattern of strain GJW-30(T) was found to be composed of glucose, ribose and rhamnose and meso-DAP as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content of strain GJW-30(T) is 62.2 mol%. Phylogenetic analysis, based on 16S rRNA gene sequence similarities, showed that strain GJW-30(T) forms a deep branch within the order Rhizobiales, sharing the highest level of sequence homology with Bradyrhizobium oligotrophicum LMG 10732(T) (93.6 %). On the basis of the phenotypic, chemotaxonomic and phylogenetic characteristics, strain GJW-30(T) is considered to represent a novel genus and species, for which the name Variibacter gotjawalensis gen. nov., sp. nov. (the type strain is GJW-30(T) = KCTC 32391(T) = CECT 8514(T) = LMG 28093(T)) is proposed.
- Subjects :
- Bacterial Typing Techniques
Base Composition
Carbohydrates analysis
Cell Wall chemistry
Cluster Analysis
DNA, Bacterial chemistry
DNA, Bacterial genetics
DNA, Ribosomal chemistry
DNA, Ribosomal genetics
Diaminopimelic Acid analysis
Fatty Acids analysis
Forests
Gram-Negative Aerobic Rods and Cocci genetics
Gram-Negative Aerobic Rods and Cocci physiology
Korea
Molecular Sequence Data
Phospholipids analysis
Phylogeny
Quinones analysis
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Gram-Negative Aerobic Rods and Cocci classification
Gram-Negative Aerobic Rods and Cocci isolation & purification
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1572-9699
- Volume :
- 105
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Antonie van Leeuwenhoek
- Publication Type :
- Academic Journal
- Accession number :
- 24599521
- Full Text :
- https://doi.org/10.1007/s10482-014-0146-z