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In order to evaluate the ecological risk reductions of copper (Cu) and cadmium (Cd) and the change of nutrient contents and stoichiometry in a smelter-impacted farmland in Guixi, Jiangxi Province, China, with ∼ 800 mg Cu kg−1 soil and 0.8 mg Cd kg−1 soil, an three years in situ experiment was conducted. The field trial consisted of 4 × 5 m plots in a completely randomised block design. Hydroxyapatite was added at 10 g kg−1 soil and Sedum plumbizincicola, Elsholtzia splendens, and Pennisetum sp. were planted. Post-treatment soil and plant samples were collected annually and analysed for Cu and Cd bioaccessibility, soil carbon: nitrogen: phosphorus (C:N:P), and the stoichiometries of soil β-glucosidase (BG), N-acetylglucosaminidase (NAG), and acid phosphatase (AP) activity levels. The results indicated that the hydroxyapatite treatments significantly reduced Cu and Cd bioaccessibility as well as the ratio of C:P and N:P. Moreover, BG, NAG, and AP activity levels all increased relative to those in untreated soil. Plants may also influence soil BG, NAG, and AP activity. This study demonstrated that in situ Cu and Cd stabilisation by hydroxyapatite and phytoextraction is ecologically safe and can alter soil mineral nutrient ecological stoichiometry and enzyme activity. [ABSTRACT FROM AUTHOR]