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Understanding and preserving the deep sea ecosystems is paramount for marine conservation efforts. Automated object (deep-sea biota) classification can enable the creation of detailed habitat maps that not only aid in biodiversity assessments but also provide essential data to evaluate ecosystem health and resilience. Having a significant source of labelled data helps prevent overfitting and enables training deep learning models with numerous parameters. In this paper, we contribute to the establishment of a significant deep-sea remotely operated vehicle (ROV) image classification dataset with 3994 images featuring deep-sea biota belonging to 33 classes. We manually label the images through rigorous quality control with human-in-the-loop image labelling. Leveraging data from ROV equipped with advanced imaging systems, our study provides results using novel deep-learning models for image classification. We use deep learning models including ResNet, DenseNet, Inception, and Inception-ResNet to benchmark the dataset that features class imbalance with many classes. Our results show that the Inception-ResNet model provides a mean classification accuracy of 65%, with AUC scores exceeding 0.8 for each class. [ABSTRACT FROM AUTHOR]

Morphology, internal structure, and in situ facies distribution of mesophotic Halimeda bioherms from the Queensland Plateau (NE Australia) are presented based on hydroacoustic and oceanographic data, seafloor observations, and discrete sediment sampling carried out during RV SONNE cruise SO292 in 2022. Halimeda buildups consist of cone-like mounds up to 500 m in diameter and 3–10 m high, with gentle slopes (2°–5° on the top of Tregrosse Bank). Bioherms occur in water depths of 10–70 m, with most bioherm between 50 and 65 m. Their internal structure consists of aggrading low-amplitude reflections at the core of the bioherm interfingering with high-amplitude reflections to the flanks. Surface facies distribution displays one to four facies belts, from distal to proximal: Halimeda rudstone, Halimeda rudstone with living plants, Halimeda rudstone with coralgal debris, and coralgal boundstone (when present, occupied the top of the bioherms). It is proposed that the alternation of two key processes contributes to the formation of these bioherms: (1) in situ accumulation of Halimeda debris and (2) episodic dismantling of the mesophotic coralgal boundstone at the centre of the bioherm by severe storms. These storms may dismantle the mesophotic reef and export coralgal rubble to the flanks. Flanks may be recolonized by Halimeda during fair-weather periods. Due to their different geomorphic expressions, complex internal structure, and surficial facies distribution, we suggest that the buildups of the Queensland Plateau represent a new Halimeda bioherm morphotype, distinct from previously described bioherms on the adjacent Great Barrier Reef and elsewhere globally. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef (GBR), Australia has a long history of palaeoenvironmental coral research. However, it can be logistically difficult to find the relevant research and records, which are often unpublished or exist as 'grey literature'. This hinders researchers' ability to efficiently assess the current state of coral core studies on the GBR and thus identify any key knowledge gaps. This study presents the Great Barrier Reef Coral Skeletal Records Database (GBRCD), which compiles 208 records from coral skeletal research conducted since the early 1990s. The database includes records from the Holocene, from ~8,000 years ago, to the present day; from the northern, central, and southern GBR from inshore and offshore locations. Massive Porites spp. coral records comprise the majority (92.5 %) of the database, and the remaining records are from Acropora , Isopora or Cyphastrea spp. The database includes 78 variables, with Sr/Ca, U/Ca and Ba/Ca the most frequently measured. Most records measure data over 10 or more years and are at monthly or lower resolution. The GBRCD is machine readable and easily searchable so users can find records relevant to their research, for example, by filtering for site names, time period, or coral type. It is publicly available as comma-separated values (CSV) data and metadata files with entries linked by the unique record ID and as Linked Paleo Data (LiPD) files. The GBRCD is publicly available from the NOAA National Center for Environmental Information's Paleoclimate Data Archive at https://doi.org/10.25921/hqxk-8h74 (Arzey et al. 2024). The collection and curation of existing GBR coral research provides researchers with the ability to analyse common proxies such as Sr/Ca across multiple locations and/or examine regional to reef scale trends. The database is also suitable for multi-proxy comparisons and combination or composite analyses to determine overarching changes recorded by the proxies. This database represents the first comprehensive compilation of coral records from the GBR. It enables the investigation of multiple environmental factors via various proxy systems for the GBR, northeastern Australia and potentially the broader Indo-Pacific. [ABSTRACT FROM AUTHOR]

Environmental damage has been of much concern, particularly in coastal areas and the oceans, given climate change and the drastic effects of pollution and extreme climate events. Our present-day analytical capabilities, along with advancements in information acquisition techniques such as remote sensing, can be utilised for the management and study of coral reef ecosystems. In this paper, we present Reef-Insight, an unsupervised machine learning framework that features advanced clustering methods and remote sensing for reef habitat mapping. Our framework compares different clustering methods for reef habitat mapping using remote sensing data. We evaluate four major clustering approaches based on qualitative and visual assessments which include k-means, hierarchical clustering, Gaussian mixture model, and density-based clustering. We utilise remote sensing data featuring the One Tree Island reef in Australia's Southern Great Barrier Reef. Our results indicate that clustering methods using remote sensing data can well identify benthic and geomorphic clusters in reefs when compared with other studies. Our results indicate that Reef-Insight can generate detailed reef habitat maps outlining distinct reef habitats and has the potential to enable further insights for reef restoration projects. [ABSTRACT FROM AUTHOR]

The initiation of the Holocene Great Barrier Reef coincided with rapid environmental change as sea level rose and inundated the shelf. Core data from One Tree Reef (southern Great Barrier Reef) shows coral growth started by ∼8.2 ka, but accretion between 8 and 7 ka was slower, occurred in deeper water, and comprised more sediment-tolerant coral communities compared to growth following sea-level stabilization. It has been postulated that environmental stressors (e.g. increased turbidity and nutrients) suppressed and delayed reef growth, however direct data supporting this hypothesis are scarce. Here we combine the isotopic composition of skeletal bound organic nitrogen (δ15N) and Ba/Ca ratios of coral skeletons with published geochemical proxies of terrestrial sediment discharge to constrain Holocene water conditions at One Tree Reef. Between 8 and 7 ka the skeletal δ15N values from multiple corals and genera were elevated (average of 8.45 ± 0.89‰) relative to the early transgression and following sea-level stabilization (average of 7.04 ± 0.82‰). We propose that elevated δ15N in corals reflects the discharge of deep terrestrial soil nitrogen resulting from high runoff. This is supported by Ba/Ca measurements and published rare earth element and yttrium (REE + Y) geochemical proxies in coral and reefal microbialites from the same cores. These data suggest that increased terrigenous discharge of sediment and nutrients did not inhibit reef growth, rather led to the establishment of slower-growing, deeper and more sediment-tolerant coral communities. Understanding the capacity for reef growth under adverse environmental conditions provides insight into thresholds and resilience of the GBR over centennial-millennial timescales. [Display omitted] • First δ15N isotopes and Ba/Ca ratios from well dated early Holocene corals from the southern Great Barrier Reef. • Test of hypothesis that elevated nutrient concentrations negatively impacted reef development during the early Holocene. • Elevated δ15N and Ba/Ca coral values suggest increased terrestrially-sourced nutrient levels on the reef at the time. • Increased terrestrial influence is also evident from REE+Y measurements on both corals and microbialites. • Poor water quality led to slower-growing, deeper and more sediment-tolerant coral communities at the time. [ABSTRACT FROM AUTHOR]

The carbon isotope 13C is commonly used to attribute the last deglacial atmospheric CO2 rise to various processes. Here we show that the growth of the world's largest reef system, the Great Barrier Reef (GBR), is marked by a pronounced decrease in δ13C in absolutely dated fossil coral skeletons between 12.8 and 11.7 ka, which coincides with a prominent minimum in atmospheric δ13CO2 and the Younger Dryas. The event follows the flooding of a large shelf platform and initiation of an extensive barrier reef system at 13 ka. Carbon cycle simulations show the coral δ13C decrease was mainly caused by the combination of isotopic fractionation during reef carbonate production and the decomposition of organic land carbon on the newly flooded shallow‐water platform. The impacts of these processes on atmospheric CO2 and δ13CO2, however, are marginal. Thus, the GBR was not contributing to the last deglacial δ13CO2 minimum at ∼12.4 ka. Plain Language Summary: An outstanding problem in our understanding of the global carbon cycle is unraveling the processes that were responsible for the rise of atmospheric CO2 during the last deglaciation (19,000–11,000 years ago). The carbon isotope 13C is commonly used to attribute the last deglacial atmospheric CO2 rise to various processes. The growth of tropical coral reefs has been controversially discussed in this context. To test this, well constrained reef carbonate records that span the last deglaciation are necessary, but such records are generally not available. Here we make use of a multi‐proxy coral reef record obtained at the Great Barrier Reef (GRB). The δ13C signal in the carbonate skeletons of fossil corals indicates a pronounced minimum that precisely coincides with a prominent minimum in atmospheric δ13CO2 as indicated by ice core records for the Younger Dryas cold period. We show, by carbon cycle simulations, that the GBR coral δ13C signal can be explained by changes in reef carbonate production and decomposition of organic land carbon on a newly flooded wide area. However, the simulations indicate that that the world's largest reef system in existence appears to have little effect on the last deglacial atmospheric CO2 and δ13CO2 changes. Key Points: Great Barrier Reef corals indicate pronounced decrease in skeletal stable carbon isotopes between 12.8 and 11.7 ka during Younger DryasEvent follows shelf flooding and barrier reef initiation at 13 ka and coincides with prominent atmospheric stable carbon isotope minimumCarbon cycle modeling reveals marginal impact of changes in reef carbonate production and land carbon decomposition on atmospheric carbon [ABSTRACT FROM AUTHOR]

More accurate global volumetric estimations of shallow-water reef deposits are needed to better inform climate and carbon cycle models. Using recently acquired datasets and International Ocean Discovery Program (IODP) Expedition 325 cores, we calculated shallow-water CaCO3 volumetrics and mass for the Great Barrier Reef region and extrapolated these results globally. In our estimates, we include deposits that have been neglected in global carbonate budgets: Holocene Halimeda bioherms located on the shelf, and postglacial pre-Holocene (now) drowned coral reefs located on the shelf edge. Our results show that in the Great Barrier Reef alone, these drowned reef deposits represent ca. 135 Gt CaCO3, comparatively representing 16–20% of the younger Holocene reef deposits. Globally, under plausible assumptions, we estimate the presence of ca. 8100 Gt CaCO3 of Holocene reef deposits, ca. 1500 Gt CaCO3 of drowned reef deposits and ca. 590 Gt CaCO3 of Halimeda shelf bioherms. Significantly, we found that in our scenarios the periods of pronounced reefal mass accumulation broadly encompass the occurrence of the Younger Dryas and periods of CO2 surge (14.9–14.4 ka, 13.0–11.5 ka) observed in Antarctic ice cores. Our estimations are consistent with reef accretion episodes inferred from previous global carbon cycle models and with the chronology from reef cores from the shelf edge of the Great Barrier Reef. [ABSTRACT FROM AUTHOR]

Coral reefs may provide a beneficial first line of defence against tsunami hazards, though this is currently debated. Using a fully nonlinear, Boussinesq propagation model, we examine the buffering capacity of the Great Barrier Reef against tsunamis triggered by several hypothetical sources: a series of far-field, Solomon Islands earthquake sources of various magnitudes (Mw 8.0, Mw 8.5, and Mw 9.0), a submarine landslide source that has previously been documented in the offshore geological record (the "Gloria Knolls Slide"), and a potential future landslide source (the "Noggin Block"). We show that overall, the Great Barrier Reef acts as a large-scale regional buffer due to the roughness of coral cover and the complex bathymetric features (i.e. platforms, shoals, terraces, etc.) that corals construct over thousands of years. However, the buffering effect of coral cover is much stronger for tsunamis that are higher in amplitude. When coral cover is removed, the largest earthquake scenario (Mw 9.0) exhibits up to a 31% increase in offshore wave amplitude and estimated run-up. These metrics increase even more for the higher-amplitude landslide scenarios, where they tend to double. These discrepancies can be explained by the higher bed particle velocities incited by higher-amplitude waves, which leads to greater frictional dissipation at a seabed covered by coral. At a site-specific level, shoreline orientation relative to the reef platforms also determines the degree of protectiveness against both types of tsunamis, where areas situated behind broad, shallow, coral-covered platforms benefit the most. Additionally, we find that the platforms, rather than gaps in the offshore reef structure, tend to amplify wave trains through wave focussing when coral cover is removed from simulations. Our findings have implications for future tsunami hazards along the northeastern Australian coastline, particularly as the physiological stressors imposed by anthropogenic climate change further exacerbate coral die-off and reductions in ecosystem complexity. Therefore, areas that experience a protective benefit by the Great Barrier Reef's platforms could be disproportionately more vulnerable in the future. [ABSTRACT FROM AUTHOR]

The calcareous Halimeda bioherms of the northern Great Barrier Reef, Australia are the largest actively accumulating Halimeda deposits worldwide. They contribute a substantial component of the Great Barrier Reef neritic carbonate factory, as well as the geomorphological development of Australia's northeast continental shelf. Halimeda bioherm geomorphology is complex, expressing three distinct variations in morphotype patterns: annulate, reticulate and undulate. Similar regular and irregular geomorphological patterning often results from scale‐dependent biophysical feedback mechanisms. Therefore, a better understanding of morphotype differentiation can inform the biotic and abiotic drivers of spatial heterogeneity in the bioherm ecosystem. Here, 3D LiDAR bathymetry is integrated with 2D sub‐bottom profile datasets to investigate surface topography and internal sedimentary architecture of Halimeda bioherms through space and time. Using the ESRI ArcGIS 3D Analyst and Benthic Terrain Modeller extensions, the bioherm surface and subsurface geomorphometric characteristics were quantified for the annulate, reticulate and undulate morphotypes. Significant variation was found between the three bioherm morphotypes in their surface topography, internal structure, volume, slope gradients and terrain complexity. Therefore, their geomorphology is probably influenced by differing processes and biophysical feedback mechanisms. The complex surface topography does not appear to be inherited from the antecedent substrate, and preferred aspect orientations resulting from hydrodynamic forcing appear to be limited. It is suggested here that autogenic dynamics or biotic self‐organization similar to patterns and processes in other marine organo‐sedimentary systems modulates Halimeda bioherm geomorphology, and some hypotheses are offered towards future studies. Morphotype differentiation has implications for the development of the Halimeda bioherm carbonate factory, rates of sediment aggradation and progradation, and variable capacity to fill accommodation space. Self‐organization dynamics and morphology differentiation in Modern bioherm systems could potentially inform palaeo‐environmental interpretations of fossil bioherms and phylloid algal mounds on geological timescales. [ABSTRACT FROM AUTHOR]

The northern Great Barrier Reef (GBR) Halimeda bioherms have accumulated on the outer continental shelf from calcium carbonate algal sediments over the past ∼10,000 years and cover >6,000 km2 of shelf area. As such, Halimeda bioherms play a key role in the shallow marine carbon cycle over millennial timescales. The main source of nitrogen (N) to these bioherms is thought to be westward transport of upwelled NO3‐‐rich water from the Coral Sea. However, the primary N source has not been traced geochemically, and we have no understanding of any temporal variation. Here, we reconstruct patterns of N supply to Halimeda bioherms in the GBR since the mid‐Holocene using the 15N/14N ratio of skeletal‐bound organic N (δ15N‐skeletal organic material [SOM]) in modern and fossil Halimeda sediment cores. Average Halimeda skeletal δ15N‐SOM was 6.28 ± 0.26‰, consistent with δ15N‐NO3‐ from western tropical South Pacific (WTSP) thermocline waters. Thus, geochemically validating shelf‐break upwelling of an oceanic N source that regulates bioherm spatial distribution. Halimeda δ15N‐SOM decreased by 1‰–2‰ from 5,000 to 2,000 cal. yr BP, reaching a minima of 5.5‰ that persisted for almost 1,000 years. The Halimeda δ15N‐SOM variation reflects mid‐ to late Holocene changes in regional climate and intensified El Niño activity that likely facilitated elevated N2 fixation in the WTSP, thereby lowering thermocline δ15N‐NO3‐. Thus, Halimeda skeletal material provides a valuable high‐resolution geochemical archive of past oceanographic and climatic processes over centennial to millennial timescales, complementing existing paleoclimate proxy records. Key Points: Well‐preserved fossil Halimeda is a valuable geochemical proxy archive of millennial‐scale oceanographic and climatic processesNitrogen (N) supply to Halimeda bioherms originates from western tropical South Pacific thermocline waters since at least the past 5,000 yearsHalimeda15N signature records a 1‰–2‰ change in δ15N‐skeletal organic material (SOM) concurrent with regional climate variation and the El Niño Southern Oscillation [ABSTRACT FROM AUTHOR]

The Great Barrier Reef (GBR) is an internationally recognized and widely studied ecosystem, yet little is known about its sea surface temperature (SST) evolution since the Last Glacial Maximum (LGM) (~20 kyr BP). Here, we present the first paleo‐application of Isopora coral‐derived SST calibrations to a suite of 25 previously published fossil Isopora from the central GBR spanning ~25–11 kyr BP. The resultant multicoral Sr/Ca‐ and δ18O‐derived SST anomaly (SSTA) histories are placed within the context of published relative sea level, reef sequence, and coralgal reef assemblage evolution. Our new calculations indicate SSTs were cooler on average by ~5–5.5°C at Noggin Pass (~17°S) and ~7–8°C at Hydrographer's Passage (~20°S) (Sr/Ca‐derived) during the LGM, in line with previous estimates (Felis et al., 2014, https://doi.org/10.1038/ncomms5102). We focus on contextualizing the Younger Dryas Chronozone (YDC, ~12.9–11.7 kyr BP), whose Southern Hemisphere expression, in particular in Australia, is elusive and poorly constrained. Our record does not indicate cooling during the YDC with near‐modern temperatures reached during this interval on the GBR, supporting an asymmetric hemispheric presentation of this climate event. Building on a previous study (Felis et al., 2014, https://doi.org10.1038/ncomms5102), these fossil Isopora SSTA data from the GBR provide new insights into the deglacial reef response, with near‐modern warming during the YDC, since the LGM. Key Points: Near‐modern sea surface temperatures were reached during the Younger Dryas Chronozone on the Great Barrier ReefSea surface temperature, reef assemblage, and sea level data provide an overview of the evolution of the Great Barrier Reef since the LGMIsopora‐based sea surface temperature calibrations can be applied to fossil Isopora to understand environmental change on coral reefs [ABSTRACT FROM AUTHOR]

Abstract The shelf of the Great Barrier Reef (GBR) was progressively marine flooded from the last glaciation maximum (LGM) (ca 20 ka BP) until the last sea-level highstand (ca 6 ka BP), affecting the depositional evolution of the GBR margin and associated deposits. However, the physiographic variables related to this process have not been fully characterized, especially in relation to the sedimentary processes at the shelf margin. For this study, we used a bathymetric model of the entire shelf and a shelf margin sub-set, divided into 33 latitudinal zones. Postglacial marine flooding was simulated and flooded area (km2), flooding magnitude (km2 per sea-level increment), flooding rate (km2 ky−1) and coastline length (km) were estimated for each zone, from 130 m to 0 m below present sea level, representing the period from 20 ka to 6 ka BP. Our results show that the postglacial marine flooding did not occur uniformly and that some sub-regions (e.g. the southern-central GBR) had early and rapid flooding. Coastal complexity increased in the mid-postglacial, reaching maximum values at around 9 ka BP. This reflects a coastal landscape evolving from a linear, laterally connected coast to a complex coast dominated by estuaries and lagoons, partly returning to its initial linearity during highstand. Flooding trends and geological evidence make two depositional relationships apparent. Firstly, the timing and magnitude of the off-shelf sediment flux appears linked to the presence and orientation of a shelf-edge rim, and to the extension and morphology of the evolving drainage network. Secondly, the periods of shelf-edge reef development and demise seem to respond to the remobilisation, trapping or redirection of fine sediments. We propose a sedimentation model for the shelf margin and the slope driven by the interplay of sea-level rise and shelf physiography, and we highlight two fundamental processes: (1) the cross-shelf sediment transport related to coastline retreat under rising sea levels, and (2) the effectiveness of transient embayments in redirecting or trapping sediments. The quantifications provided in this study have implications in the estimation of Pleistocene carbonate budgets and the atmospheric carbon cycle, as well as for past human migrations. Highlights • Postglacial marine flooding was not uniform across the Great Barrier Reef shelf. • Southern-central shelf flooded earlier and at a higher rate than most areas. • Coastline evolved from linear in the early postglacial, to estuarine and lagoonal. • Timing and magnitude of slope sediment flux linked to margin and drainage morphology. • Shelf-edge reef evolution linked to remobilisation or trapping of fine sediments. Graphical abstract fx1 [ABSTRACT FROM AUTHOR]

Fellowes, T.E.; Gacutan, J.; Harris, D.L.; Vila-Concejo, A.; Webster, J.M., and Byrne, M., 2017. Patterns of sediment transport using foraminifera tracers across sand aprons on the Great Barrier Reef. Sediment dynamics exert large control over coral reef geomorphological evolution and are vital to understanding past and present geomorphic responses. Large benthic foraminifera (LBF) live in the algal reef flats, and their tests (shells) are transported post-mortem by waves and currents onto back-reef environments, including sand aprons. This study investigated the patterns of transport linking surficial and downcore sediments in samples from three sand aprons with different wave exposures at One Tree Reef on the southern Great Barrier Reef (Australia). Six LBF genera represented up to 32% of the sediments analysed. Lagoonward transport increased LBF test abrasion and sediment bulk density. Sediment grain size and LBF abundance in sediments also decreased with lagoonward transport. Sediment transport patterns indicated by LBF species used as tracer were consistent with the prominent E-SE wave environment. A novel taphofacies approach was used to describe stratigraphic layers in downcore sediments based on LBF test abrasion and abundance. Varied sediment deposition rates did not affect the LBF test abrasion signature downcore. It appears that Baculogypsina sphaerulata has been the dominant species for at least 3 ka. Tests that were deposited slowly exhibited less or the same levels of abrasion than those that were rapidly deposited. It appears that test abrasion is primarily determined by the distance travelled rather than the influence of increased age or chemical dissolution. [ABSTRACT FROM AUTHOR]

Relative sea-level changes can dramatically alter coastal geomorphology and coastlines, which, in turn, can fundamentally alter tidal regimes. The Great Barrier Reef (GBR) has undergone around 120 m of relative sea level (RSL) rise since the Last Glacial Maximum, ∼20,000 years ago (ka). Ooid grains (sand sized carbonate sediment) that formed in shallow water (>5 m depth) and under prolonged hydrodynamics forcing are now found at depth ranging between 100 and 120 m under the present day GBR Gulf of Capricorn. The apparent inconsistency between preferential conditions for their formation and the actual environment where they are found at present-day could be used to infer past regional hydrodynamic conditions. Here, we focus on the regional changes in the GBR tidal dynamics over the last 16.8 ka to show that sea-level rise on the GBR has caused significant changes on tidal patterns and dynamics. To do so, we used the first multi-scale palaeo-tidal finite element coastal tidal model of the GBR over five time slices (present day, ∼10 ka, ∼12 ka, ∼15 ka and 16.8 ka), representing the position of RSL at 0 m, 20 m, 45 m, 75 m and 96 m below present. We show that favourable conditions for ooid formation only existed for a short period of time between 16.8 and 11 ka. At that time, the Gulf of Capricorn was a wide shallow shelf with strong currents constantly agitating grains, providing rapid burial, exposure and re-burial cycles. We show that these conditions only existed for a short period of time and hence explain the presence of ooid grain formation in the GBR at that time. We propose ooids formed within the Capricorn Channel at a time of lower RSL than expected and then underwent sub-tidal transportation to their final deposition place via tidal currents, explaining the inconsistency with their age and the depth at which they were found. • First palaeo numerical model of the Great Barrier Reef tidal systems. • Tidal dynamics have dramatically changed over the last 16,800 years. • It was possible for ooid grains to form ∼16,000 years ago on the Great Barrier Reef. • Our analysis suggests that ooid grains were formed away from the final deposition site. • Tidal dynamics of the Great Barrier Reef are strongly connected to sea level change. [ABSTRACT FROM AUTHOR]

A seismic stratigraphy analysis was conducted at two sites, Hydrographers and Noggin passages, separated by about 540 km on the shelf-edge of the central Great Barrier Reef (GBR), Australia. We used recently available seismic and bathymetry data and a new synthesis of downhole logs and lithological, petrophysical and radiometric data from cores recovered by the Integrated Ocean Drilling Program Expedition 325 (Great Barrier Reef Environmental Changes). We compared the stratigraphy of both sites, identifying a full depositional sequence with deposits from at least 28 ka BP to ~ 7 ka BP, bounded by two marine flooding surfaces. Within this sequence, each systems tract is represented by unique depositional features characteristic of the shelf-edge systems. Despite the broad environmental and geomorphic similarities between the two sites, differences in postglacial reef development were remarkable. These contrasts can be explained as a result of: (1) local antecedent substrate variations and (2) the interplay of shelf physiography with Late Quaternary sea level fluctuations, which favoured changes in biological production and sediment flux as the palaeo-shoreline evolved from linear to complex during intermediate sea levels. During these intermediate sea levels, the northern estuarine coast and its steep substrate at shelf-edge locations contrasted strongly with the protected palaeo-lagoons and the extensive, gentle marginal terraces found at the southern central GBR. This setting enhanced the regional differences in sediment transport and reef development through the last transgression. The conceptual model presented here provides a broader depositional framework and improves the understanding of the main processes controlling the spatial and temporal depositional patterns on the shelf-edge of mixed siliciclastic-carbonate margins. [ABSTRACT FROM AUTHOR]

Shallow (< 200 m) submarine landslides influence margin evolution and can produce devastating tsunamis, yet little is known about these processes on mixed siliciclastic–carbonate margins. We have discovered seven landslides along the shelf edge and upper slope of the central Great Barrier Reef (GBR), Australia. The largest shelf edge landslide is investigated in detail and represents a collapse of a 7 km long section of the shelf edge at 90 m water depth with coarse debris deposited up to 5.5 km away on the upper slope down to 250 m. The precise timing and triggering mechanisms are uncertain but available chronologic and seismic stratigraphic evidence suggests that this event occurred during the last deglacial sea-level rise between 20 and 14 ka. Regional bathymetric data confirms that these shelf edge and upper slope slides are restricted to the central GBR between latitude 18° and 19°S, suggesting a spatial relationship between the extensive Burdekin paleo-fluvial/delta system and shallow landslide activity. This study highlights an important local mechanism for the generation of tsunamis on this margin type, and numerical simulations under present conditions confirm that a 2 to 3 m tsunami wave could be produced locally. However, we consider that the risk of such slides, and their resulting tsunamis, to the modern coastline is negligible due to their relatively small size and the capacity of the GBR to dissipate the wave energy. [ABSTRACT FROM AUTHOR]

The response of platform reefs to sea-level stabilization over the past 6 ka is well established for the Great Barrier Reef (GBR), with reefs typically accreting laterally from windward to leeward. However, these observations are based on few cores spread across reef zones and may not accurately reflect a reef's true accretional response to the Holocene stillstand. We present a new record of reef accretion based on 49 U/Th ages from Heron and One Tree reefs in conjunction with re-analyzed data from 14 reefs across the GBR. We demonstrate that hydrodynamic energy is the main driver of accretional direction; exposed reefs accreted primarily lagoon-ward while protected reefs accreted seawards, contrary to the traditional growth model in the GBR. Lateral accretion rates varied from 86.3 m/ka–42.4 m/ka on the exposed One Tree windward reef and 68.35 m/ka–15.7 m/ka on the protected leeward Heron reef, suggesting that wind/wave energy is not a dominant control on lateral accretion rates. This represents the most comprehensive statement of lateral accretion direction and rates from the mid-outer platform reefs of the GBR, confirming great variability in reef flat growth both within and between reef margins over the last 6 ka, and highlighting the need for closely-spaced transects. [ABSTRACT FROM AUTHOR]

Extensive drilling of the Great Barrier Reef (GBR) in the 70s and 80s illuminated the main factors controlling reef growth during the Holocene. However, questions remain about: (1) the precise nature and timing of reef “turn-on” or initiation, (2) whether consistent spatio-temporal patterns occur in the bio-sedimentologic response of the reef to Holocene sea-level rise then stability, and (3) how these factors are expressed in the context of the different evolutionary states (juvenile–mature–senile reefs). Combining 21 new C 14 -AMS and 146 existing re-calibrated radiocarbon and U/Th ages, we investigated the detailed spatial and temporal variations in sedimentary facies and coralgal assemblages in fifteen cores across four reefs (Wreck, Fairfax, One Tree and Fitzroy) from the Southern GBR. Our newly defined facies and assemblages record distinct chronostratigraphic patterns in the cores, displaying both lateral zonation across the different reefs and shallowing upwards sequences, characterised by a transition from deep ( Porites /faviids) to shallow ( Acropora / Isopora ) coral types. The revised reef accretion curves show a significant lag period, ranging from 0.7–2 ka, between flooding of the antecedent Pleistocene substrate and Holocene reef turn-on. This lag period and dominance of more environmentally tolerant early colonizers (e.g., domal Porites and faviids), suggests initial conditions that were unfavourable for coral growth. We contend that higher input of fine siliciclastic material from regional terrigenous sources, exposure to hydrodynamic forces and colonisation in deeper waters are the main factors influencing initially reduced growth and development. All four reefs record a time lag and we argue that the size and shape of the antecedent platform is most important in determining the duration between flooding and recolonisation of the Holocene reef. Finally, our study of Capricorn Bunker Group Holocene reefs suggests that the size and shape of the antecedent substrate has a greater impact on reef evolution and final evolutionary state (mature vs. senile), than substrate depth alone. [ABSTRACT FROM AUTHOR]

Spur and groove features occur on the seaward reef slope of coral reefs around the world. They are believed to act as important natural breakwaters, regulating the hydrodynamic energy and nutrients received by reef platforms. They also represent one of the most diverse and productive zones of modern reefs. However, the formation processes and morphodynamics of spur and groove systems are poorly understood, particularly in the Great Barrier Reef (GBR). This paper constitutes the first broad scale analysis of spur and groove systems in the Capricorn Bunker Group (CBG) in the southern GBR. It uses remotely sensed imagery coupled with ground-truthed data to measure groove length at four reefs (Wreck, Heron, One Tree and Lady Elliot). A total of 2621 grooves were digitised across the four study reefs. Groove length was found to vary both between and within the study reefs. The maximum groove length was 536 m. Average groove length ranged from 93 m at Wreck Reef to 32 m at Heron Reef. This data was compared to relative wave exposure estimates derived from the fetch scenario at each reef. Strong positive correlation was found with groove length increasing as wave exposure increased. Groove length was highly spatially dependant and varied around the reef platforms according to the degree of wave exposure. The longest grooves were found on the most exposed, eastern sides of all reefs. These results provide valuable insight into spur and groove function, formation and likely response to future environmental changes in the CBG and further afield. [ABSTRACT FROM AUTHOR]

Abstract: Extensive shelf-edge reefs (SERs) and terraces are common along the seaward margin of the Great Barrier Reef (GBR). We aim to better understand the architecture of the SERs, deposited during a poorly constrained period: the Last Glacial Maximum (LGM) and early postglacial. A dense array of Topas seismic lines was interpreted at Hydrographers Passage in the southern central GBR following a seismic stratigraphic approach ground-truthed against Integrated Ocean Drilling Program Expedition 325 (IODP Exp. 325) sediment core data. We interpreted two prominent sub-bottom reflectors, an upper R1 and a lower R2, that separate three seismic units. According to our borehole-to-seismic correlation in a representative location, R1 corresponds to a downward increase of impedance which is also reflected in lithological and diagenetical changes. R2 is poorly constrained, but likely also represents a lithological contrast. Seismic velocities were also estimated in the same borehole location for inter-reef deposits and reef framework. Together with the geomorphic interpretation, we reconstructed velocity maps for the study area, leading to the generation of a 3D geomorphic model of the antecedent topography or substrate, and volumetric calculations. Geomorphic and thickness trends suggest a strong relationship between the antecedent topography and the morphology of the SERs. The distribution of seismic facies identified in the dataset, coupled to geomorphic trends and published sea level curves, allowed us to reconstruct the LGM to postglacial depositional history of these deposits. Our interpretation suggests significant regressive reefal accumulations formed on top of a marine flooding surface represented by reflector R2 during the sea level fall to the LGM. R1 is the distal equivalent of an unconformity previously identified in the GBR inner- and mid-shelf, widely affected by subaerial exposure, on top of which a postglacial, transgressive, mainly reefal Unit 1 was deposited. Two zones are distinguished: (1) a distal zone (below 80mbsl) with thick deposits displaying fringing-reef morphologies, influenced by the late-LGM fall and subsequent early-postglacial rise in sea level and by the updip availability of substrate; and (2) a proximal zone (above 80mbsl) of enhanced vertical growth with unfilled lagoons, resulting from the lack of lateral substrate and the rapid sea level rise. Our seismic stratigraphic model of the development of the SERs, sediment volumetrics, and 3D reconstruction of the antecedent topography provides a foundation for future forward modeling stratigraphic studies. [Copyright &y& Elsevier]

Abstract: Late Pleistocene to Holocene margin sedimentation on the Great Barrier Reef, a mixed carbonate-siliciclastic margin, has been explained by a transgressive shedding model. This model has challenged widely accepted sequence stratigraphic models in terms of the timing and type of sediment (i.e. carbonate vs. siliciclastic) deposited during sea-level oscillations. However, this model documents only hemipelagic sedimentation and the contribution of coarse-grained turbidite deposition, and the role of submarine canyons in this process, remain elusive on this archetypal margin. Here we present a new model of turbidite deposition for the last 60 ky in the north-eastern Australia margin. Using high-resolution bathymetry, 58 new and existing radiometric ages, and the composition of 81 turbidites from 15 piston cores, we found that the spatial and temporal variation of turbidites is controlled by the relationship between sea-level change and the variable physiography along the margin. Siliciclastic and mixed carbonate-siliciclastic turbidites were linked to canyons indenting the shelf-break and the well-developed shelf-edge reef barriers that stored sediment behind them. Turbidite deposition was sustained while the sea-level position allowed the connection and sediment bypassing through the inter-reef passages and canyons. Carbonate turbidites dominated in regions with more open conditions at the outer-shelf and where slope-confined canyons dominated or where canyons are generally less abundant. The turn-on and maintenance of carbonate production during sea-level fluctuations also influenced the timing of carbonate turbidite deposition. We show that a fundamental understanding of the variable physiography inherent to mixed carbonate-siliciclastic margins is essential to accurately interpret deep-water, coarse-grained deposition within a sequence stratigraphic context. [Copyright &y& Elsevier]

During Integrated Ocean Drilling Program Expedition 325, 34 holes were drilled along five transects in front of the Great Barrier Reef of Australia, penetrating some 700 m of late Pleistocene reef deposits (post-glacial; largely 20 to 10 kyr bp) in water depths of 42 to 127 m. In seven holes, drilled in water depths of 42 to 92 m on three transects, older Pleistocene (older than last glacial maximum, >20 kyr bp) reef deposits were recovered from lower core sections. In this study, facies, diagenetic features, mineralogy and stable isotope geochemistry of 100 samples from six of the latter holes were investigated and quantified. Lithologies are dominated by grain-supported textures, and were to a large part deposited in high-energy, reef or reef slope environments. Quantitative analyses allow 11 microfacies to be defined, including mixed skeletal packstone and grainstone, mudstone-wackestone, coral packstone, coral grainstone, coralline algal grainstone, coral-algal packstone, coralline algal packstone, Halimeda grainstone, microbialite and caliche. Microbialites, that are common in cavities of younger, post-glacial deposits, are rare in pre-last glacial maximum core sections, possibly due to a lack of open framework suitable for colonization by microbes. In pre-last glacial maximum deposits of holes M0032A and M0033A (>20 kyr bp), marine diagenetic features are dominant; samples consist largely of aragonite and high-magnesium calcite. Holes M0042A and M0057A, which contain the oldest rocks (>169 kyr bp), are characterized by meteoric diagenesis and samples mostly consist of low-magnesium calcite. Holes M0042A, M0055A and M0056A (>30 kyr bp), and a horizon in the upper part of hole M0057A, contain both marine and meteoric diagenetic features. However, only one change from marine to meteoric pore water is recorded in contrast with the changes in diagenetic environment that might be inferred from the sea-level history. Values of stable isotopes of oxygen and carbon are consistent with these findings. Samples from holes M0032A and M0033A reflect largely positive values (δ18O: −1 to +1‰ and δ13C: +1 to +4‰), whereas those from holes M0042A and M0057A are negative (δ18O: −4 to +2‰ and δ13C: −8 to +2‰). Holes M0055A and M0056A provide intermediate values, with slightly positive δ13C, and negative δ18O values. The type and intensity of meteroric diagenesis appears to have been controlled both by age and depth, i.e. the time available for diagenetic alteration, and reflects the relation between reef deposition and sea-level change. [ABSTRACT FROM AUTHOR]

This error has now been corrected in the Supplementary Information 3 file that accompanies the original Article. Correction to: I Scientific Reports i https://doi.org/10.1038/s41598-021-04586-w, published online 18 January 2022 The Supplementary Information 3 file published with this Article contained an error where irrelevant data samples, incorrect or out-of-date references, and inconsistent notations obscured the results of the postglacial accretion trends and affected their reproducibility. [Extracted from the article]

Abstract: New high-resolution bathymetry, seismic reflection profiles, and existing sidescan data have revealed the presence of a series of submarine canyons in the slope off the Noggin Passage region, north-eastern Australia. The morphology of the Noggin Canyons contrasts with that of the canyons in the Ribbon Reef region, further north along the north-eastern Australia margin. The Noggin Canyons are mostly slope-confined, with canyon heads located at water depths between 200 and 400m. These narrow and straight canyons show a decrease in canyon relief with depth, and have incision values and canyon gradients lower than the Ribbon Reef Canyons. New findings on the Ribbon Reef Canyons reveal an increase of canyon relief with depth in the shelf-incised canyons, as well as complex relationships between geomorphic parameters, such as canyon gradient, incision, canyon width and canyon wall gradient. The main factors controlling the differences in canyon morphology are the shape of the continental slope and the presence of barrier reefs at the shelf-edge. Steep exponential and linear slope profiles, and the presence of an extensive shelf-edge barrier system in the Ribbon Reef region, are related to large shelf-incised canyons. In contrast, the slope-confined canyons of the Noggin region are linked to sigmoidal slopes, and more open outer-shelf conditions lacking barrier reefs. These conditions allow higher overall sediment supply to the upper slope, and the resulting formation of sigmoidal slope profiles. In the Ribbon Reef region, the physical barriers provided by the shelf-edge barrier reefs reduce the amount of shelf-to-basin sediment transport, thereby forming exponential slopes. Further, sediment gravity flow deposition through the canyons is more prominent in the Ribbon Reef region, as a direct consequence of the more frequent breaching of the shelf by the canyons, otherwise infrequent in the Noggin region. Our results highlight this particular relationship between canyon and slope morphology, and the importance of the variable shelf-edge morphology in controlling the shelf-to-basin sediment transport. This aspect is especially relevant for understanding the margin development in modern and ancient mixed carbonate-siliciclastic continental settings. [Copyright &y& Elsevier]

Harris, P. T., Bridge, T. C. L., Beaman, R. J., Webster, J. M., Nichol, S. L., and Brooke, B. P. 2013. Submerged banks in the Great Barrier Reef, Australia, greatly increase available coral reef habitat. – ICES Journal of Marine Science, 70: 284–293.Anthropogenic global ocean warming is predicted to cause bleaching of many near-sea-surface (NSS) coral reefs, placing increased importance on deeper reef habitats to maintain coral reef biodiversity and ecosystem function. However, the location and spatial extent of many deep reef habitats is poorly known. The question arises: how common are deep reef habitats in comparison with NSS reefs? We used a dataset from the Great Barrier Reef (GBR) to show that only about 39% of available seabed on submerged banks is capped by NSS coral reefs (16 110 km2); the other 61% of bank area (25 600 km2) is submerged at a mean depth of around 27 m and represents potential deep reef habitat that is spatially distributed along the GBR continental shelf in the same latitudinal distribution as NSS reefs. Out of 25 600 km2 of submerged bank area, predictive habitat modelling indicates that more than half (around 14 000 km2) is suitable habitat for coral communities. [ABSTRACT FROM PUBLISHER]

An investigation into the evolution of coral rubble deposits on a coral reef platform is assessed using high-resolution remote sensing data and geospatial analysis. Digital change detection analysis techniques are applied to One Tree Reef in the southern Great Barrier Reef by analysing aerial photographs and satellite images captured between 1964 and 2009. Two main types of rubble deposits were identified: (1) rubble flats that are featureless mass accumulations of coral rubble; and, (2) rubble spits that are shore-normal linear features. While both deposits prograde in a lagoon-ward direction, rubble spits move faster (∼2 m/yr) than rubble flats (∼0.5 m/yr). The volume of rubble, the underlying substrate, the energy regime, and storm frequency control the rate of progradation. Rubble flat occurrence is restricted to the high-energy (windward) margin of the coral reef platform, while rubble spits are distributed reef wide, both in modal high energy and modal low energy regions of the reef. Rubble spit deposition is considered to be a result of enlarged spur and groove morphology of the forereef, whereby wave energy is focused through the enlarged groove formations causing the preferential deposition of coral rubble in particular zones of the adjacent reef flat. One last control is thought to be the elevation of the reef crest whereby lower areas are more prone to rubble flat development. A vertical and ocean-ward accumulation of rubble is occurring on the windward margin of the reef leading to a build-up and build-out of the reef, governing the expansion of the reef footprint. This study shows for the first time the evolution of a coral reef rubble flat and rubble spits over decadal time scales as detected through remotely sensed images spanning 45 years. [ABSTRACT FROM AUTHOR]

Abstract: The Holocene reef in the outer Great Barrier Reef (GBR) represents an archetypal reef system, forming a thin veneer (10–30m) built upon an older Pleistocene reef surface. The morphology, stratigraphy and maturity (degree of lagoonal sediment infilling) of the modern reef results from the complex interplay between biologic and abiologic processes (reef accretion, sediment erosion, transport and deposition), basement substrate, and Holocene sea level rise. Combining 3D forward stratigraphic modelling (CARBONATE-3D) with a re-analysis of published observational data, we quantitatively simulate the Holocene evolution of One Tree Reef (Southern GBR) as a well constrained, model system, and explore the main processes affecting reef growth in the GBR and elsewhere. We test the influence of different basement substrate surfaces, sea level curves, reef accretion rates, sediment erosion and transport parameters and assess their relative importance in controlling reef evolution—particularly growth histories, 3D internal structure and stratigraphy and reef maturity. Quantitative comparisons between our “best estimate” model output and the observed data confirm that we are able to simulate a 75% match of the main morphologic and growth characteristics of One Tree Reef. The range of parameters tested produced the full spectrum of reef maturities from unfilled “juvenile” buckets to planar “senile” reefs with completely sediment infilled lagoons. We conclude that the shape and depth of the basement substrate has the strongest influence—significantly impacting reef evolution and final maturity including the shape of the “bucket”, the size of the reef margins and internal reef structure. In contrast, variations in sea level, sediment production, erosion and transport mainly controlled the degree of lagoonal sediment filling. This study has implications for better understanding the past evolution of the GBR and other reefs but also lays the foundation for improved predictions of possible trajectories of modern reefs in general in the face of future environmental changes. [Copyright &y& Elsevier]

Abstract: We present the most complete and new high-resolution multibeam bathymetry datasets from the shelf to the basin in the Ribbon Reef region, northern Great Barrier Reef (GBR). Analysis of these data, combined with existing side-scan sonar data provides a detailed morphologic framework of the submarine canyon system and other related features, their spatial distribution, controlling factors on their evolution, and evidence of recent sedimentary activity. Two morphologically different submarine canyon types are recognised: 1) shelf-incised canyons whose heads are indented into the shelf-break at shallow-water depths (about 60 to 80m). These canyons can be single-fed or multi-fed depending on the number of tributaries that merge into the main canyon valley. According to the degree of connection with the shelf, these canyons can be reef-blocked, partly reef-blocked or shelf-connected; 2) slope-confined canyons, which are located at deeper waters in the slope and show a different canyon head morphology. Canyon formation and development of the different canyon types is explained according to a four-phase model. In the first phase, localised slope failures and/or sediment gravity flows may lead to the formation of an initial canyon by retrogressive headward or downslope erosion respectively. These processes continue during the second transitional phase, leading to upslope canyon progression. Finally, canyons breach the shelf-break during a mature stage that represents the more active phase in the canyon evolution. The development of an extensive shelf-edge barrier reef (Ribbon Reefs) represents a fourth phase that conditioned the sedimentary dynamics of the canyons. The location and morphology of this reef barrier determine the type and amount of sediment supply by controlling the connection of the canyon head with the shelf drainage system. Recent canyon activity is evidenced by the presence of erosive and depositional features that include submarine landslides, gullies and rills on the canyon walls and slopes, sandwaves migrating along the canyons floors, and sediment gravity flows deposited on the lower canyons and adjacent basin floor. [Copyright &y& Elsevier]

The article presents a study that deals with the association between the photosynthetic endosymbionts and scleractinian corals inhabiting deep reef ecological systems. It assesses the deep-water Symbiodinium diversity from 10 different coral genera at a depth range of 45 to 70 meters on the Great Barrier Reef in Australia. It employs denaturing ingredient gel electrophoresis fingerprinting of the internal transcribed spacer region of the ribosomal DNA to establish Symbiodinium identity. It stresses the need to examine symbiont diversity across broad environmental ranges.

Abstract: The submerged reefs on continental margins and surrounding oceanic islands are important archives of past climates, eustatic sea-level oscillations and oceanographic processes. Australia''s north eastern submerged shelf edge reefs have previously been explored, but all studies have been limited by either low-resolution single beam profiles or by their limited spatial extent. The aim of this study is to improve the understanding of the origin and development of submerged shelf edge reefs, terraces and related features on the Great Barrier Reef (GBR), and the influence of Pleistocene sea-level oscillations on their distribution and geomorphology. We investigated the first large-scale (1400km2) 3D bathymetry and acoustic backscatter dataset of four widely-spaced sites located across ca. 650km along the shelf edge at Ribbon Reefs 1–5, Noggin Pass, Viper Reef and Hydrographers Passage. We provide a comprehensive description and systematic classification of the shelf edge features, and constrain their spatial distribution and geomorphologic variability using a wide range of quantitative morphometrics. Fifteen features are defined, four of which are the focus of this study, including terraces, pinnacles, ridges and channels. Using modern reefs within the GBR for comparison, we interpret these as fringing reefs, patch and barrier reefs and tidal channels respectively. The influence of gross shelf geomorphology and oceanographic factors driving the observed variability within and between sites is discussed in conjunction with Mid-Late Pleistocene sea-level oscillations. We observed two distinct types of reef growth characterised by the degree of development, which we interpret as analogous to juvenile and mature modern reefs of the GBR. Juvenile reefs are very common and occur within each site at depths of less than 50m to greater than 100m. They are defined as discontinuous peaked barrier reefs, peaked patch reefs and fringing reefs. Mature reefs are less common and develop exclusively at a depth range of ca. 50–70m. These reefs are defined as flat-topped continuous barrier and double barrier reefs. Through a comparison with published Mid-Late Pleistocene sea-level oscillations, we note that the depth range of mature reefs is consistent with the depth of repeated low-amplitude (<20m) eustatic sea-level oscillations, and independent of the relative time spent at sea-level. We conclude that repeated low-amplitude sea-level rises provide the much-needed accommodation space for vertical accretion that is not provided during stillstands, without inducing reef drowning, which can be caused by high-amplitude sea-level rise. Low-amplitude sea-level falls are also less detrimental than high-amplitude falls, in terms of habitat compression. Together, the effects of enhanced reef accretion and limited habitat compression at depths of 50–70m have lead to a concentrated net gain in vertical relief that is not observed elsewhere on the shelf edge. [Copyright &y& Elsevier]

The timing and courses of deglaciations are key components in understanding the global climate system. Cyclic changes in global climate have occurred, with growth and decay of high latitude ice sheets, for the last two million years. It is believed that these fluctuations are mainly controlled by periodic changes to incoming solar radiation due to the changes in Earth's orbit around the sun. However, not all climate variations can be explained by this process, and there is the growing awareness of the important role of internal climate feedback mechanisms. Understanding the nature of these feedbacks with regard to the timing of abrupt global sea-level and climate changes is of prime importance. The tropical ocean is one of the major components of the feedback system, and hence reconstructions of temporal variations in sea-surface conditions will greatly improve our understanding of the climate system. The Integrated Ocean Drilling Program (IODP) Expedition 325 drilled 34 holes across 17 sites in the Great Barrier Reef, Australia to recover fossil coral reef deposits. The main aim of the expedition was to understand the environmental changes that occurred during the last ice age and subsequent deglaciation, and more specifically (1) establish the course of sea-level change, (2) reconstruct the oceanographic conditions, and (3) determine the response of the reef to these changes. We recovered coral reef deposits from water depths down to 126 m that ranged in age from 9,000 years to older than 30,000 years ago. Given that the interval of the dated materials covers several paleoclimatologically important events, including the Last Glacial Maximum, we expect that ongoing scientific analyses will fulfill the objectives of the expedition. [ABSTRACT FROM AUTHOR]

The article investigates the composition of sessile benthic megafauna communities on mesophotic coral reefs at Noggin Pass, Viper Reef and Hydrographers Passage in the shelf-edge of the Great Barrier Reef (GBR) in Australia. The substratum and megafauna at each site were characterized through stereo imagery collected in separate autonomous underwater vehicle surveys. The images indicated that non-reef habitats predominated and that megafauna were mainly confined to reef habitats. Consistent patterns in the functional ecological groups located in particular finer-scale habitat types are considered. It was found that phototropic taxa dominated the flatter tops of submerged reefs while heterotrophic suspension-feeders occupied steeper habitats.

This paper describes the role of the autonomous underwater vehicle (AUV) Sirius on a research cruise to survey drowned reefs along the shelf edge of the Great Barrier Reef in Queensland, Australia. The primary function of the AUV was to provide georeferenced, high-resolution optical validation of seabed interpretations based on acoustic data. We describe the AUV capabilities and its operation in the context of the multiple systems used in the cruise. The data processing pipeline involved in generating simultaneous localization and mapping–based navigation, large-scale, three-dimensional visualizations, and automated classification of survey data is briefly described. We also present preliminary results illustrating the type of data products possible with our system and how they can inform the science driving the cruise. © 2010 Wiley Periodicals, Inc. [ABSTRACT FROM AUTHOR]

Abstract: We present four new high-resolution multibeam bathymetry datasets from the shelf edge of the northern Great Barrier Reef (GBR). Analysis of these data, combined with Chirp sub-bottom profiles and existing submersible observation data provides a fresh insight into the detailed morphology and spatial distribution of submerged reefs and terraces at the shelf edge. An extensive and persistent line of drowned shelf edge reefs exist on the GBR margin in about 40 to 70 m. They appear as barrier reefs up to 200 m wide and comprising twin parallel ridges of rounded pinnacles. Subtle yet consistent terrace and step features lie between 78 and 114 m seaward of the shelf edge reefs in the southern study area. Submersible observations confirm that the drowned reefs now provide a favorable hard substrate for live soft corals and algae. They form a consistent and extensive seabed habitat that extends for possibly 900 km along the GBR shelf edge. The submerged reef and terraces features may reflect a complex history of growth and erosion during lower sea-levels, and are now capped by last deglaciation reef material. [Copyright &y& Elsevier]

Sand aprons are distinctive landforms that offer important insights into sedimentary dynamics for reef platform development. Here we link temporal and spatial scales of 21 sand aprons in the southern Great Barrier Reef to understand their Holocene formation and evolution in response to relative sea-level changes, the depth of the Pleistocene base, and contemporary morphodynamics. Our results show that lagoon infilling is a function of reef size and is a self-limiting process controlled by hydrodynamics and relative sea-level changes. Lagoon infilling does not depend on the type of reef or degree of exposure to waves, but it could reflect past wave climates. Our carbonate productivity estimates based on lagoon infilling are remarkably similar to those inferred from habitat classification. Finally, we hypothesize that current carbonate productivity has slowed because of the effects of climate change. [ABSTRACT FROM AUTHOR]

Rubble islands are dynamic sedimentary features present on reef platforms that evolve under a variety of morphodynamic processes and controlling mechanisms. They provide valuable inhabitable land for small island nations, critical habitat for numerous species, and are threatened by climate change. Aiming to investigate the controlling mechanisms dictating the evolution of One Tree Island (OTI), a rubble island in the Southern Great Barrier Reef, we combined different remotely-sensed data across varying timescales with wave data extracted from satellite altimetry and cyclone activity. Our findings show that (1) OTI had expanded by 7% between 1978 and 2019, (2) significant gross planform decadal adjustments were governed by the amount, intensity, proximity, and relative position of cyclones as well as El Niño Southern Oscillation (ENSO) phases, and (3) the mechanisms of island growth involve rubble spits delivering and redistributing rubble to the island through alongshore sediment transport and wave overtopping. Frequent short-term monitoring of the island and further research coupling variations in the different factors driving island change (i.e., sediment availability, reef-wave interactions, and extreme events) are needed to shed light on the future trajectory of OTI and other rubble islands under a climate change scenario. [ABSTRACT FROM AUTHOR]

Calcification of microbial mats adds significant amounts of calcium carbonate to primary coral reef structures that stabilizes and binds reef frameworks. Previous studies have shown that the distribution and thicknesses of late Quaternary microbial crusts have responded to changes in environmental parameters such as seawater pH, carbonate saturation state, and sediment and nutrient fluxes. However, these studies are few and limited in their spatio-temporal coverage. In this study, we used 3D and 2D examination techniques to investigate the spatio-temporal distribution of microbial crusts and their responses to environmental changes in Integrated Ocean Drilling Program (IODP) Expedition 325 (Great Barrier Reef Environmental Changes) fossil reef cores that span 30 to 10 ka at two locations on the GBR reef margin. Our GBR microbialite record was then combined with a meta-analysis of 17 other reef records to assess global scale changes in microbialite development (i.e., presence/absence, thickness) over the same period. The 3D results were compared with 2D surface area measurements to assess the accuracy of 2D methodology. The 2D technique represents an efficient and accurate proxy for the 3D volume of reef framework components within the bounds of uncertainty (average: 9.45 ± 4.5%). We found that deep water reef frameworks were most suitable for abundant microbial crust development. Consistent with a previous Exp. 325 study (Braga et al., 2019), we also found that crust ages were broadly coeval with coralgal communities in both shallow water and fore-reef settings. However, in some shallow water settings they also occur as the last reef framework binding stage, hundreds of years after the demise of coralgal communities. Lastly, comparisons of crust thickness with changes in environmental conditions between 30 and 10 ka, show a temporal correlation with variations in partial pressure of CO 2 (pCO 2), calcite saturation state (Ω calcite), and pH of seawater, particularly during the past ~15 kyr, indicating that these environmental factors likely played a major role in microbialite crust development in the GBR. This supports the view that microbialite crust development can be used as an indicator of ocean acidification. • Comprehensive dataset of reefal microbial crusts over the past 30,000 years. • Modern 3D analysis to assess heterogeneity of microbialites in reef frameworks. • Radiocarbon ages show microbialite development coeval with and postdating framework. • Microbialite thickness correlates with changes in carbonate saturation level and pH. [ABSTRACT FROM AUTHOR]

Bioerosion traces preserved in coral reef framework provide insight into past environmental conditions and reef health. However, few studies have explored the relationship between bioerosion, reef growth history and environmental changes. The International Ocean Drilling Program (IODP) Expedition 325 sampled late glacial to deglacial reef sequences that developed from 30 to 10 ka on the shelf-edge adjacent to the modern Great Barrier Reef (GBR). This study quantifies spatiotemporal patterns of macrobioerosion intensity (macrobioerosion intensity referred to as BI) of trace ichnogenera: Entobia (sponges), Gastrochaenolites (bivalves) and Maeandropolydora / Trypanites (worms) based on detailed observations of 13 drill holes from two cross-shelf transects in two regions: Hydrographers Passage in the southern central GBR and Noggin Pass in the north. Our high-resolution stratigraphic and temporal records of bioerosion activity are defined and compared to published multi-proxy paleoenvironmental interpretations from the Exp. 325 cores. Coralgal assemblages, geochronology and lithology are used to understand the controls on the multi-scale spatiotemporal patterns of bioerosion across and along the GBR shelf and within individual holes. Noggin Pass is characterized by significantly higher bioerosion activity than Hydrographers. At each transect changes in bioerosion intensity are observed to be coeval with some major reef sequence boundaries, however due to the unconsolidated nature and limited recovery many boundaries have inconclusive trends. Statistical analysis is used to interpret the relationship of bioerosion intensity to various factors including paleo-water depth, lithology, coral and algal assemblages, transect location, geomorphic feature, vertical accretion and reef sequences. Terrigenous sediment flushing, depositional regime and a pronounced latitudinal gradient in sea surface temperature are likely to have contributed to the significant regional differences in bioerosion intensity between northern and southern transects and also during reef demise. Bioerosion at both transects is highest in the 'proto-barrier' (Reef 4) sites when compared to all fringing terrace reefs (Reef 3a, 3b and 4). Higher bioerosion tends to occur when vertical accretion is at its extremes (its lowest and highest limits). The enhanced bioerosion alongside lowest reef accretion in a sea level rise scenario (Reef 3a, 3b and 4) might have contributed to reef degradation prior to its demise. • Bioerosion is higher at Noggin (northern) than at Hydrographers (southcentral GBR). • Noggin's higher Bioerosion likely reflects regional environmental differences. • Bioerosion is highest in the proto-barrier compared to fringing reef sequences. • High bioerosion tends to occur when vertical accretion is at its highest or lowest. [ABSTRACT FROM AUTHOR]

The fossil record provides valuable data for improving our understanding of both past and future reef resilience and vulnerability to environmental change. The spatial and temporal pattern of the initiation of the Holocene Great Barrier Reef presents a case study of reef response to rapid sea-level rise. Past studies have been limited by the lack of well-dated and closely spaced reef core transects and have not closely examined the composition of the reef-building communities through time. This study presents 80 new high precision U Th and 5 radiocarbon ages from twelve new cores located along three transects across different geomorphic and hydrodynamic settings of One Tree Reef, southern Great Barrier Reef, to document three distinct stages of Holocene reef development in unprecedented detail. Temporal constraints on changing paleoecological assemblages of coral, coralline algae and associated biota revealed three distinct phases of reef development, consisting of: 1)a fast, shallow and clear-water reef initiation from 8.2 until 8 ka; 2)a shift to slower, deeper and more turbid-water reef growth from 8 to 7 ka; and 3)a return to shallow and rapid branching coral growth in clear-water conditions as the reef "catches up" to sea-level. A minimum lag prior to reef initiation of 700 years was identified, which differs in length depending on reef environment and Pleistocene substrate height. In this new model, reef growth initiated on the topographically lower leeward margin and patch reef, prior to the start of windward margin development, contrary to the traditional reef growth model. While there was a shift to conditions less favorable for reef growth at 8 ka, this did not prevent the slow accretion of more sediment-tolerant coral communities. The majority of the reef reached sea level by ~6 ka. This new conceptual model of Holocene reef growth provides new constraints on changes in paleoenvironment that controlled reef community composition and growth trajectories through sea-level rise following inundation. • The most comprehensive study of Holocene reef growth on the Great Barrier Reef. • Earliest Holocene reef growth dated to 8.2 ka occurring first on the leeward margin • A lag of 700 to 1,200 yrs found between first reef growth and platform flooding • Slow accretion of sediment-tolerant corals in deeper water identified 8 to 7 ka • Reef caught up to sea level with shallow branching coral framework after 7 ka [ABSTRACT FROM AUTHOR]

Back-reef sand aprons are conspicuous and dynamic sedimentary features in coral reef systems. The development of these features influences the evolution and defines the maturity of coral reefs. However, the hydrodynamic processes that drive changes on sand aprons are poorly understood with only a few studies directly assessing sediment entrainment and transport. Current and wave conditions on a back-reef sand apron were measured during this study and a digital elevation model was developed through topographic and bathymetric surveying of the sand apron, reef flats and lagoon. The current and wave processes that may entrain and transport sediment were assessed using second order small amplitude (Stokes) wave theory and Shields equations. The morphodynamic interactions between current flow and geomorphology were also examined. The results showed that sediment transport occurs under modal hydrodynamic conditions with waves the main force entraining sediment rather than average currents. A morphodynamic relationship between current flow and geomorphology was also observed with current flow primarily towards the lagoon in shallow areas of the sand apron and deeper channel-like areas directing current off the sand apron towards the lagoon or the reef crest. These results show that the short-term mutual interaction of hydrodynamics and geomorphology in coral reefs can result in morphodynamic equilibrium. [ABSTRACT FROM AUTHOR]

Comparatively little work has been carried out on the morphology and distribution of submarine landslides on mixed carbonate-siliciclastic margins. The morphometric analysis of 84 open slope submarine landslides on the Great Barrier Reef (GBR) margin of north-eastern Australia provides useful insights into slope failure dynamics and frequency distribution of landslides on mixed margins. Our analysis has revealed that the slope area affected by failures (12.6% of the margin) is similar to siliciclastic-dominated passive margins, although the total volume of remobilized sediment (73 km3) is comparatively small. Landslide scars lie at shallower depths to the south of the margin (mean of 576 m vs 1517 m to the north) and there is good correlation between the depth at origin and depth at termination for the GBR landslides. The cumulative frequency distribution of volume, area and total length of the GBR landslides does not fit to common distributions (e.g., power law, logarithmic or exponential) for the entire dataset. Still, the cumulative frequency distribution of landslide dimensions can be statistically explained either by a power law similar to other passive margins, or by a lognormal distribution similar to some siliciclastic margins. Morphometric characteristics, such as the volume of sediment released per unit width and the probability function of volume distribution suggest that slope failures mainly involved relatively unconsolidated sediments. We find that the disintegration by debris flows was the dominant process along the entire GBR margin and that their spreading efficiency and mobility was relatively low. Margin stratigraphy, fluid overpressure at the base of the slope, and detachment surfaces at the boundary between different lithologies that separate sedimentary cycles may have preconditioned the slope to fail. This compilation provides a robust morphometric framework that allows comparison with existing and future slope failure databases, and lays the foundation for performing numerical simulations to assess the landslide-generated tsunamigenic hazards along the GBR margin. • Slope failure dynamics from morphometric analysis of 84 submarine landslides • Area affected by failures is similar to some siliciclastic-dominated passive margins. • Relatively low spreading efficiency and mobility of debris flows • Cumulative frequency distribution explained by lognormal and power-law distributions [ABSTRACT FROM AUTHOR]

Abstract: The distribution of live, well preserved, and relict larger benthic foraminifera (LBF) in sediment samples collected off the shelf margin near Hydrographers Passage in the Great Barrier Reef, Australia, was studied to document taphonomic processes in this setting. In total, eight living species of LBF were found, mostly of the families Amphisteginidae and Nummulitidae, separated into a shallow (platform) assemblage and a deep (terrace) assemblage. The modern (well preserved) shells in the sediment revealed a good representation of this fauna, but differences in depth distribution were lost. The relict fauna is represented by a more diverse fauna, and is composed mostly of taxa occurring in much shallower conditions. We interpret this pattern as an initial downslope transport of the foraminifera from the shelf into deeper waters, and a mixing of foraminifera derived from nearby Pleistocene coral reef structures. [Copyright &y& Elsevier]

Abstract: The stratigraphy of fringing coral reef environments and platforms provides unique insights into reef development and evolution. This study used twelve sediment cores from three transects across a reef flat in Nelly Bay, Magnetic Island (NE Australia), to examine its development over the Holocene. The maximum thickness of the Holocene reefal material based on seismic and bore log data was around 5m and comparable to other fringing reefs in the Great Barrier Reef (GBR). Six different sedimentary facies were identified in the cores and two coincided with reef accretion: the lower muddy sand with coral rubble and the upper siliciclastic sand with coral rubble. Radiocarbon and U-series dates show that the Nelly Bay fringing reef initiated around 6300yr BP on a gently sloping, unconsolidated or weakly cemented Pleistocene alluvial sedimentary facies. The ages of four massive coral heads (range between 5790 and 6290 calibrated C-14 yr BP) were almost contemporaneous with reefal initiation indicating that conditions were favourable for reef growth around this time. Vertical accretion rates for the Nelly Bay fringing reef were, on average about 0.5mm/yr over the last 6000yr, although rates were as high as 5mm/yr during initiation. Average lateral accretion rates varied from 98 to 120mm/yr, which are comparable to rates of other fringing reefs in the region. The age structure of the lower muddy sedimentary facies was consistent with the classic seaward prograding model of fringing reef development. In contrast, the upper siliciclastic sand with coral rubble facies was much younger in age (<1100yr BP) than the models and appears to represent an erosional unconformity between the upper and lower reefal facies possibly linked to late Holocene sea-level fall. This younger facies extends laterally across the reef flat and has no obvious prograding symmetry. Our integrated approach, using multi-proxy analyses of sediment cores from the Nelly Bay reef flat, highlights the complex development of this reef which include changes in coral composition and rubble preservation, reef evolution in response to sea-level change and changes in reef accretion rates. [Copyright &y& Elsevier]

Contemporary understanding of Holocene coral reef development is based primarily on sub-surface investigations of reef flat, back reef and lagoon zones. Few studies of Holocene fore reef development exist, constituting a significant gap in our understanding of reef evolution. The spur and groove (SaG) zone is a distinct, understudied, feature of fore reefs worldwide. We review SaG development from previous studies and present 29 new SaG short cores with 52 14C and U–Th ages from six fore reef regions of Heron and One Tree reefs, the first such data from the Great Barrier Reef. Remarkably, we found that SaGs do not necessarily accrete in the same direction as their adjacent reef flat. We identified three modes of reef flat and SaG lateral accretion: Mode 1 – lagoonward accretion of both the reef flat and SaGs; Mode 2 –lagoonward accretion of the reef flat but seaward accretion of the SaGs; Mode 3 - seaward accretion of both the reef flat and SaGs. Most SaG zones (five of the six studied) accreted in a seaward direction (Modes 2 or 3). Hydrodynamic conditions and local topography appear to be the dominant factors determining which mode occurs. Episodic high-energy events are also likely to play an important role in SaG formation. Our findings suggest that traditionally held models of reef evolution whereby lagoonal, mature reefs fill, developing into senile platform reefs, may not hold. Rather, reef flats may continue to expand seaward on their leeward, and semi-exposed fronts to increase in size while maintaining their lagoons. • Cores show 3 modes of spur and groove development in southern Great Barrier Reef. • Hydrodynamic conditions and local topography likely determine which mode occurs. • Episodic high-energy events also play an important role in formation. • Most spur and groove zones cored were accreting seaward. • Reef flats may continue to expand seaward while maintaining their lagoons. [ABSTRACT FROM AUTHOR]

Reef growth patterns and the development of associated environments have been extensively studied from reef deposits from Holocene and previous interglacial highstands. However, reefs that grew during glacial lowstands are comparatively poorly understood. Here we show the formation of reef-flat and back-reef environments following rapid sea-level fall (15-20 mm yr-1 and 20-40 m in magnitude) during the Last Glacial Maximum (LGM) on the present shelf edge of the Great Barrier Reef. Sedimentological and foraminiferal analyses of unconsolidated reef sediments recovered in cores 111-140 m below sea level at Hydrographers Passage during Integrated Ocean Drilling Project (IODP) Expedition 325 reveal the occurrence of a benthic foraminiferal assemblage dominated by the genera Calcarina and Baculogypsina, which is common in modern reef-flat and back-reef environments in the Great Barrier Reef and elsewhere. This assemblage is associated with higher foraminiferal proportions in reef sediments and higher proportions of well-preserved Baculogypsina tests in the same intervals, which also characterize reef-flat environments. Radiocarbon (14C--accelerator mass spectrometry) ages of reef-flat dwelling foraminifers (n = 22), which indicate the time when these foraminifers were alive, are consistent with the timing of the two-step sea-level fall into the LGM as defined by the previously published well-dated coralgal record. This foraminiferal evidence suggests the development of geomorphically mature fringing reefs with shallow back-reef lagoons during the LGM. Our results also imply that back-reef sediment accumulation rates during the LGM lowstand were comparable to those during the Holocene highstand. [ABSTRACT FROM AUTHOR]

Abstract Microbialites are volumetrically abundant components in Last Glacial Maximum and deglacial reefs in the Australian Great Barrier Reef sampled by IODP Expedition 325 in 34 holes from 17 sites (M0030–M0058), along four transects on the shelf edge. Detailed radiometric datings show that four distinct reef phases developed between 28and 10 ka, displaying offlapping and then backstepping patterns. The reef boundstone facies include coralgal, coralgal-microbialite and microbialite boundstone. The microbialite consists of combinations of micrite/microspar, bioclasts, siliciclastic grains (up to 14.5%), fenestrae and encrusting epibionts. The micrite/microspar is high-magnesian calcite commonly irregularly clotted, fenestral and peloidal. Mesoscale microbialite fabrics include laminated, structureless, digitate, intraskeletal and boring-filling, and coatings on debris. Intraskeletal and boring-filling is the first fabric to develop in skeletal voids and borings. It is usually followed by structureless and laminated microbialite, locally overlain by digitate fabric. Microbialite-coated debris can occur at any stage in this succession, including in bioclastic accumulations where the scarce in situ framework builders are mainly encrusting corals. Lipid biomarkers of intermediate to high specificity for sulfate-reducing bacteria, together with δ13C values of these lipids, indicate that microbialite formation was favored by sulfate-reducing bacteria in anoxic microenvironments, probably under high nutrient levels. The microbialite in fore-reef deposits accumulated in the photic zone in water depths of a few to several tens of meters, within small spaces generated by large bioclasts and encrusting corals in the topmost centimeters of the sediment. These crusts that formed on the illuminated surface constitute a previously unrecognized style of microbialite formation in Quaternary reefs. As with the cryptic crusts described from other reef locations, its greatest development occurred during the Last Glacial Maximum and early deglaciation. Microbial carbonate formation during this interval may reflect elevated seawater carbonate saturation corresponding with relatively low levels of atmospheric CO 2. Highlights • Microbialite is a main component in LGM and deglacial reefs in NE Australian shelf. • Microbialite was mediated by bacterial sulfate reduction in anoxic micro-environments. • Microbialite-coated debris is common in fore-reef bioclastic accumulations. • Fore-reef microbialite formed in the photic zone in shallow water depths. • LGM and deglacial microbialites may reflect elevated seawater carbonate saturation. [ABSTRACT FROM AUTHOR]

Abstract To understand sea-level changes since the Last Glacial Maximum (LGM) and their effects on coral reef systems, the shelf-edge slopes of the Great Barrier Reef (GBR) were cored during the Integrated Ocean Drilling Program (IODP) Expedition 325. Recovered unconsolidated sediments beneath the submerged shelf edge reefs contain abundant foraminiferal tests, which record changes in depositional environments and paleo-water depths. A total of 177 sediment samples were collected from 17 holes along three transects located within two geographical areas (Noggins Pass and Hydrographers Passage), and were analyzed to determine stratigraphic changes in foraminiferal assemblages (2–0.5 mm size fraction). Results show that four foraminiferal assemblages (A, B, C and D) are delineated by multivariate analyses (Q-mode cluster analysis and non-metric multidimensional scaling: NMDS), and these assemblages correspond to a back-reef to reef margin zone (0–10 m deep; Assemblage A), an upper photic zone (10–30 m deep) associated with hard substrates (Assemblage B), an intermediate to lower photic zone (30–90 m deep) characterized by soft substrates (Assemblage C), and a lower photic zone (90–130 m deep) only found in modern shelf slopes (Assemblage D). Gradual shifts in these four foraminiferal assemblages superimposed on a two-dimensional NMDS ordination mainly reflect water-depth gradients and the relative dominance of two substrate types (hard and soft substrates). Pre-LGM (older than Marine Isotope Stage 3: ≥MIS3) sediments along transects at Hydrographers Passage were deposited at intermediate to lower photic zones. In contrast, relatively shallow-water sequences found in ≥MIS3 deposits at Noggins Pass likely owe their origin to either turbidite and/or land slide processes. The lack of Assemblage D in ≥MIS3 deposits from all transects could be related to lowering temperature and/or increasing terrestrial influences (i.e. more light attenuation). Shallowing upward sequences found in LGM (MIS 2) deposits at Hydrographers Passage are likely related to stepwise sea-level falls to the full extent of the LGM. These foraminifer-based paleoenvironmental interpretations suggest that the GBR shelf edge slopes have changed their depositional environments continuously in response to sea-level fluctuations during the last glacial cycle. Highlights • GBR shelf-edge sediment cores contain four distinct foraminiferal assemblages. • Four GBR foraminiferal assemblages reflect variations in water depth and substrate. • ≥MIS3 depositional environments differ between Noggins Pass and Hydrographers Passage. • Upward shallowing LGM deposits are related to stepwise sea-level falls. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef (GBR) located along the northeastern margin of Australia is the largest coral reef system in the world. Modern climatic alterations are quickly changing the GBR ecosystem. To understand the implications of these changes it is important to reconstruct the geological history of GBR. Here we use geochemical and magnetic proxies to evaluate past climatic fluctuations and their consequences on sediment deposition along the GBR margin. IODP Expedition 325 – Hole M0058A, drilled on the uppermost slope at ca. 170 m water depth, reveals the depositional history of the GBR margin during the interval of MIS 7 to 5 and MIS 1. Magnetic and geochemical variations along the core section reveal detailed information on sediment accumulation and on the variations in terrigenous input in relation to sea-level fluctuations and climate change. Sea-level variations influenced margin deposition between MIS 7 and 6 impacting shoreline progradation/retrogradation and siliciclastic redistribution, resulting in a mixture of finer to coarser magnetic assemblages with no significant changes in terrigenous input. At the end of MIS 6 a decline in the deposition of carbonate sediments concomitant with the deposition of fine-grained magnetite-rich terrigenous sediments suggests an intensification of the monsoon in response to global warming trends. Arid periods over NE Australia were established after the glacial/interglacial transition (the MIS 6-5e) and at the middle Holocene (after the MIS 2–1 transition at ca. 7 ka), which favored dust deposition over the region. Enhanced dust fertilization subsequently promoted primary productivity at these intervals resulting in the presence of biogenic magnetite at Hole M0058A produced by magnetotactic bacteria. • IODP Expedition 325 - Hole M0058A data reveal changing sedimentation accumulation in response to past climate changes. • A mixture of magnetic assemblages resulted from the redistribution of siliciclastic sediments. • Fine-grained magnetite indicates surface runoff, while biogenic magnetite is related to dust input. [ABSTRACT FROM AUTHOR]

Many factors govern reef growth through time, but their relative contributions are commonly poorly known. A prime example is the degree to which modern reef morphology is controlled by contemporary hydrodynamic settings or antecedent topography. Fortunately, reefs record essential information for interpreting palaeoclimate and palaeoenvironment within their structure as they accrete in response to environmental change. Five new cores recovered from the margin of Heron Reef, southern Great Barrier Reef (GBR), provide new insights into Holocene reef development and relationships between Holocene reefs and Pleistocene antecedent topography, suggesting much more irregular underlying topography than expected based on the configuration of the overlying modern reef margin. Cores were recovered to depths of 30 m and 94 new 230 Th ages document growth between 8408 ± 24 and 2222 ± 16 yrs. BP. One core penetrated Pleistocene basement at ∼15.3 m with Holocene reef growth initiated by ∼8.4 ka BP. However, 1.83 km west along the same smooth margin, four cores failed to penetrate Pleistocene basement at depths between 20 and 30 m, suggesting that the margin at this location overlies a karst valley, or alternatively, the antecedent platform does not extend there. A 48 m-long margin-perpendicular transect of three cores documents the filling of this topographic low, at least 30 m beneath the current reef top, with seaward lateral accretion at a rate of 34.3 m/ka. Cores indicate steady vertical and lateral accretion between 3.2 and 1.8 ka BP with no evidence of the hiatus in reef flat progradation seen in most other offshore reefs of the GBR at that time. These cores suggest that the relative protection afforded by the valley allowed for unconsolidated sediment to accumulate, enabling continuous progradation even when other areas of the reef flat appear to have ‘turned off’. Additionally, the cores suggest that although reefs in the southern GBR clearly owe their location to Pleistocene antecedent topography, modern reef morphology at sea level primarily reflects the interaction of Holocene reef communities with contemporary hydrodynamics. [ABSTRACT FROM AUTHOR]