303 results on '"Yan Zha"'
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2. Oxidative and Extractive Desulfurization of Fuel Oils Catalyzed by N‑Carboxymethyl Pyridinium Acetate and N-Carboxyethyl Pyridinium Acetate Acidic Ionic Liquids: Experimental and Computational DFT Study
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Amani Sager, Shofiur Rahman, Syed A. Imtiaz, Yan Zhang, Abdullah Alodhayb, Paris E. Georghiou, and Mahmoud Al-Gawati
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Chemistry ,QD1-999 - Published
- 2024
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3. Imaging-Assisted Antisense Oligonucleotide Delivery for Tumor-Targeted Gene Therapy
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Hanwen Liao, Siyi Wang, Xiaoning Wang, David Zixiang Dai, Yan Zhang, Chenghong Zhu, and Jinbo Li
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Medical technology ,R855-855.5 ,Chemistry ,QD1-999 - Published
- 2024
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4. Preparation and biological evaluation of coumarin amide derivatives bearing fluorine as potential fungicides and anticancer agents
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Xin Xiang, Yafang Chen, Lang Wu, Long Zhang, Yan Zhang, Wude Yang, and Xiang Yu
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Coumarin ,Fluorine ,Synthesis ,Antifungal activities ,Anticancer activity ,Chemistry ,QD1-999 - Abstract
In order to find new potential fungicides and anticancer agents, a series of new coumarin amide derivatives bearing fluorine were synthesized and characterized spectroscopically. Compounds A6, B11, C2 and C7 were confirmed by X-ray diffraction further. The antifungal bioassays against five typical pathogenic fungi showed that compound C5 exhibited more remarkable fungicidal activities against Alternaria alternata (EC50 = 11.5 μg/mL), Colletotrichum gloeosporioides (EC50 = 18.0 μg/mL), Pyricularia grisea (EC50 = 33.8 μg/mL), surpassing kresoxim-methyl. Molecular docking result indicated that C5 displayed high binding affinity to chitinase, which plays crucial role in degradation and remodeling of fungal cell walls. In addition, the anticancer bioassays against three cancer cells demonstrated that compound A4 displayed excellent growth inhibitory effect against Hela cells with IC50 value of 8.13 μM, and low cytotoxicity against human normal cells BEAS-2B. Flow cytometric analysis further demonstrated that A4 significantly arrested cell cycle at the S phase and trigger apoptosis. With the above interesting biological profile, these coumarin derivatives could be used as anfungicides and anticancer candidates.
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- 2024
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5. Generic and accurate prediction of retention times in liquid chromatography by post–projection calibration
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Yan Zhang, Fei Liu, Xiu Qin Li, Yan Gao, Kang Cong Li, and Qing He Zhang
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Chemistry ,QD1-999 - Abstract
Abstract Retention time predictions from molecule structures in liquid chromatography (LC) are increasingly used in MS–based targeted and untargeted analyses, providing supplementary evidence for molecule annotation and reducing experimental measurements. Nevertheless, different LC setups (e.g., differences in gradient, column, and/or mobile phase) give rise to many prediction models that can only accurately predict retention times for a specific chromatographic method (CM). Here, a generic and accurate method is present to predict retention times across different CMs, by introducing the concept of post–projection calibration. This concept builds on the direct projections of retention times between different CMs and uses 35 external calibrants to eliminate the impact of LC setups on projection accuracy. Results showed that post–projection calibration consistently achieved a median projection error below 3.2% of the elution time. The ranking results of putative candidates reached similar levels among different CMs. This work opens up broad possibilities for coordinating retention times between different laboratories and developing extensive retention databases.
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- 2024
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6. Nonconventional aggregation‐induced emission polysiloxanes: Structures, characteristics, and applications
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Yan Zhao, Lei Xu, Yanyun He, Zhixuan Feng, Weixu Feng, and Hongxia Yan
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aggregation‐induced emission ,molecular structure ,nonconventional luminescent polymer ,photoluminescence property ,polysiloxane ,Chemistry ,QD1-999 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Nonconventional luminescent materials have been rising stars in organic luminophores due to their intrinsic characteristics, including water‐solubility, biocompatibility, and environmental friendliness and have shown potential applications in diverse fields. As an indispensable branch of nonconventional luminescent materials, polysiloxanes, which consist of electron‐rich auxochromic groups, have exhibited outstanding photophysical properties due to the unique silicon atoms. The flexible Si‐O bonds benefit the aggregation, and the empty 3d orbitals of Si atoms can generate coordination bonds including N → Si and O → Si, altering the electron delocalization of the material and improving the luminescent purity. Herein, we review the recent progress in luminescent polysiloxanes with different topologies and discuss the challenges and perspectives. With an emphasis on the driving force for the aggregation and the mechanism of tuned emissions, the role of Si atoms played in the nonconventional luminophores is highlighted. This review may provide new insights into the design of nonconventional luminescent materials and expand their further applications in sensing, biomedicine, lighting devices, etc.
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- 2024
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7. Synthesis and Characterization of a Resin/Acrylamide-2-acrylamide-2-methylpropane Sulfonate-Diallyl Dimethyl Ammonium Chloride‑N‑vinyl-2-pyrrolidinone Polymer Microcapsule Gelling Agent for Oil and Gas Field Transformation
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Yunfeng Liu, Lang Zhou, Yongfan Tang, Qiang Liu, Wei Li, and Yan Zhang
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Chemistry ,QD1-999 - Published
- 2023
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8. Membrane Protein Structures in Native Cellular Membranes Revealed by Solid-State NMR Spectroscopy
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Yan Zhang, Yuefang Gan, Weijing Zhao, Xuning Zhang, Yongxiang Zhao, Huayong Xie, and Jun Yang
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Chemistry ,QD1-999 - Published
- 2023
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9. Effect of a Self-Assembled Nucleating Agent on the Crystallization Behavior and Spherulitic Morphology of Poly(lactic acid)
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Zhixiang Yan, Yanqin Huang, Wenfeng Zhao, Bin Wu, Chengkai Liu, Xiangyu Yan, Hongwei Pan, Yan Zhao, and Huiliang Zhang
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Chemistry ,QD1-999 - Published
- 2023
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10. Live-Cell Imaging to Resolve Salt-Induced Liquid–Liquid Phase Separation of FUS Protein by Dye Self-Labeling
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Yan Zhang, Ning Xu, Chunyu Yan, Xuelian Zhou, Qinglong Qiao, Lu Miao, and Zhaochao Xu
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Medical technology ,R855-855.5 ,Chemistry ,QD1-999 - Published
- 2023
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11. Multi-Objective Optimization Study of Annular Fluid Flow Structure in Cordless Core Drilling Tools
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Zhitong Zhu, Fan Huang, Yan Zhao, Changping Li, Hairui Wei, Guang Liu, Yutao Shao, and Minghao Jia
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hydraulic lifting ,cordless coring drilling tool ,numerical simulation model ,BP neural network ,multi-objective optimization ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Traditional drilling methods often face difficulty meeting the demand for efficient and accurate coring under complex geological conditions. Cordless coring is an advanced technology that uses hydraulic lifting to carry out coring, which can achieve automation and automated and intelligent drilling operations. In this research, a new type of hydraulic lifting cordless coring drilling tool is designed. Moreover, a numerical simulation model of the fluid flow in the annulus between the spearhead and spool of the cordless coring drilling tool was established. Orthogonal simulation tests are carried out, and according to the orthogonal test data, a numerical prediction model of the spool annulus fluid field based on the Backpropagation Neural Network (BP neural network) is established. The prediction of the flow rate of the drilling fluid and the spool back-pressure ratio was obtained when the structural parameters of the spearhead and the spool annulus were different. A multi-objective optimization of the annulus flow structure of the cordless core drilling tool has been carried out. The optimization objectives include deciding the back pressure ratio of the spool overcoming the spring and the flow rate of the drilling fluid. According to the established nonlinear optimization model and based on the improved Non-dominated Sorting Genetic Algorithm II (NSGA-II) multi-objective optimization algorithm, it is verified that the convergence speed and diversity of the improved algorithm are better than those before the improvement. The simulation and experimental validation are carried out. It is verified that the flow rate of drilling fluid increased by 33.56% after optimization, and the force ratio was lowered by 5.825%. Finally, based on the simulation and optimization results, the φ96 cordless core drilling tool was manufactured on a trial basis, and on-site concrete drilling, coring, and hydraulic lifting operations were conducted for smooth coring and lifting. This study could provide an important scientific basis and technical support for the application and development of hydraulic lifting cordless coring technology.
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- 2024
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12. Phase Behavior of Fluid Composition in Coalbed Methane Wells Pre- and Post-Workover: An Examination of the Panzhuang Block, Qinshui Basin, Shanxi, China
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Qingwei Wang, Qiang Yan, Yan Zhang, Xiafan Xing, and Cailian Hao
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coalbed methane ,workover operation ,fluid composition ,stage change ,coal reservoir ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Workover operations significantly impact the service life and gas production capacity of coalbed methane (CBM) wells and are crucial for optimizing resource exploitation. To investigate workover operations’ impact on coal seam reservoirs, the authors designed a series of experiments and obtained the following results: (1) The workover operation induced a phase transition in the solid-liquid composition produced by the CBM well, indicating changes in the coal reservoir’s internal structure. (2) During the stable production stage before and after the workover, the proportion of Na+, Cl−, Ca2+, and Total Dissolved Solids (TDS) in the water samples showed a downward trend as a whole, while the HCO3−; after the workover, the Na+, Cl−, Ca2+, and TDS all increased suddenly, while the HCO3− decreased. (3) While inorganic minerals predominated in the precipitation material during the stable production stage pre-workover, their proportion decreased post-workover, with a noticeable shift in their qualitative composition. (4) It is an indisputable fact that workover operations cause physical and chemical damage to coal seam reservoirs. During workover operation, how to avoid damage and conduct benign reconstruction to the reservoir will be the direction of our future efforts. The experimental results provide valuable insights that can guide the optimization of CBM workover operations and inform the strategic planning of subsequent drainage activities.
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- 2024
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13. The Beneficial Effects of Lacticaseibacillus paracasei subsp. paracasei DSM 27449 in a Letrozole-Induced Polycystic Ovary Syndrome Rat Model
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Yan Zhang Lee, Shih-Hsuan Cheng, Yu-Fen Lin, Chien-Chen Wu, and Ying-Chieh Tsai
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polycystic ovary syndrome ,microRNAs ,Lacticaseibacillus paracasei subsp. paracasei ,letrozole ,Bax ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Polycystic ovary syndrome (PCOS) is a prevalent endocrine disorder affecting women of reproductive age globally. Emerging evidence suggests that the dysregulation of microRNAs (miRNAs) and gut dysbiosis are linked to the development of PCOS. In this study, the effects of Lacticaseibacillus paracasei subsp. paracasei DSM 27449 (DSM 27449) were investigated in a rat model of PCOS induced by letrozole. The administration of DSM 27449 resulted in improved ovarian function, reduced cystic follicles, and lower serum testosterone levels. Alterations in miRNA expressions and increased levels of the pro-apoptotic protein Bax in ovarian tissues were observed in PCOS-like rats. Notably, the administration of DSM 27449 restored the expression of miRNAs, including miR-30a-5p, miR-93-5p, and miR-223-3p, leading to enhanced ovarian function through the downregulation of Bax expressions in ovarian tissues. Additionally, 16S rRNA sequencing showed changes in the gut microbiome composition after letrozole induction. The strong correlation between specific bacterial genera and PCOS-related parameters suggested that the modulation of the gut microbiome by DSM 27449 was associated with the improvement of PCOS symptoms. These findings demonstrate the beneficial effects of DSM 27449 in ameliorating PCOS symptoms in letrozole-induced PCOS-like rats, suggesting that DSM 27449 may serve as a beneficial dietary supplement with the therapeutic potential for alleviating PCOS.
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- 2024
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14. Characterization and Source Analysis of Heavy Metal(loid)s Pollution in Soil of an Industrial Park in Kunming, China
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Wenping Luo, Pingtang Wei, Yan Zhang, and Chengshuai Sun
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different site ,pollution assessment ,source analysis ,Atomic fluorescence method ,inductively coupled plasma mass spectrometry ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This study investigated the characteristics and sources of heavy metal(loid) pollution in the soil of a key industrial park in Kunming, China. In total, 60 soil samples (40 from agricultural land and 20 from construction land) were collected from and around the park. The soil pH and contents of Arsenic (As), lead (Pb), copper (Cu), zinc (Zn), cadmium (Cd), mercury (Hg), nickel (Ni), and chromium (Cr) were measured. The contents of the eight heavy metal(loid)s were analyzed using the background values of heavy metal(loid)s in the Kunming soil. The pollution load, geoaccumulation, and Nemero Comprehensive Pollution Indices were used for environmental risk evaluation. Cluster and principal component analyses were used to resolve heavy metal(loid) sources. Cd was enriched in construction and agricultural soils. As, Hg, Cd, Pb, Cu, and Zn exhibited large spatial differentiation and were significantly affected by the external environment. A regional pollution load index of 3.02 indicated overall heavy pollution. The pollution load index for each heavy metal(loid) indicated light pollution. The geoaccumulation index indicated relatively severe As, Cd, Cu, Pb, and Zn pollution. The Nemero Composite Pollution Index value showed that the study area was heavily polluted, with construction land being mildly polluted by Cd, and agricultural land being moderately polluted. The results of the spatial distribution show that there were high levels of contamination in the center. Correlation and principal component analyses showed that the pollution sources of the eight heavy metal(loid)s varied. Hg, Cd, and Pb originate primarily from industrial and agricultural pollution. Traffic sources significantly impacted Cu, Pb, Cd, and Cr. Natural sources are the main sources of Cr, Ni, and Cd. Ni is also affected by industrial sources, whereas Zn and Cu are affected by agricultural pollution. The influences of As, Cd, and Pb on the surface soil in the study area were more serious. Cd is more widely polluted and should be a priority in controlling soil heavy metal(loid)s.
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- 2024
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15. LncRNAs in the Dlk1-Dio3 Domain Are Essential for Mid-Embryonic Heart Development
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Xiangqi Teng, Hongjuan He, Haoran Yu, Ximeijia Zhang, Jie Xing, Jiwei Shen, Chenghao Li, Mengyun Wang, Lan Shao, Ziwen Wang, Haopeng Yang, Yan Zhang, and Qiong Wu
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Dlk1-Dio3 domain ,cardiac development ,epicardial cell ,proliferation ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The Dlk1-Dio3 domain is important for normal embryonic growth and development. The heart is the earliest developing and functioning organ of the embryo. In this study, we constructed a transcriptional termination model by inserting termination sequences and clarified that the lack of long non-coding RNA (lncRNA) expression in the Dlk1-Dio3 domain caused the death of maternal insertion mutant (MKI) and homozygous mutant (HOMO) mice starting from E13.5. Parental insertion mutants (PKI) can be born and grow normally. Macroscopically, dying MKI and HOMO embryos showed phenomena such as embryonic edema and reduced heart rate. Hematoxylin and eosin (H.E.) staining showed thinning of the myocardium in MKI and HOMO embryos. In situ hybridization (IHC) and quantitative reverse-transcription polymerase chain reaction (qRT-PCR) showed downregulation of lncGtl2, Rian, and Mirg expression in MKI and HOMO hearts. The results of single-cell RNA sequencing (scRNA-Seq) analysis indicated that the lack of lncRNA expression in the Dlk1-Dio3 domain led to reduced proliferation of epicardial cells and may be an important cause of cardiac dysplasia. In conclusion, this study demonstrates that Dlk1-Dio3 domain lncRNAs play an integral role in ventricular development.
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- 2024
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16. The Effecting Mechanisms of 100 nm Sized Polystyrene Nanoplastics on the Typical Coastal Alexandrium tamarense
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Luying Li, Qian Liu, Bo Li, and Yan Zhao
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nanoplastics ,Alexandrium tamarense ,physiological–biochemical performance ,gene information ,effecting mechanisms ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Due to the increase in nanoplastics (NPs) abundance in aquatic environments, their effects on phytoplankton have aroused large research attention. In this study, 100 nm sized polystyrene NPs were chosen to investigate their effecting performance and mechanisms on a typical dinoflagellates Alexandrium tamarense. The results indicated the population growth and photosynthetic efficiencies of A. tamarense were significantly inhibited by NPs exposure, as well as the increase in cellular total carotenoids and paralytic shellfish toxins (PSTs). Meanwhile, the cellar ROS levels increased, corresponding to the increased activities or contents of multiple antioxidant components, including SOD, CAT, GPX, GR, GSH and GSSG. The transcriptional results support the physiological–biochemical results and further revealed the down-regulation of genes encoding the light reaction centers (PSI and PSII) and up-regulation of genes encoding the antioxidant components. Up-regulation of genes encoding key enzymes of the Calvin cycle and glycolytic pathway together with the TCA cycle could accelerate organic carbon and ATP production for A. tamarense cells resistant to NPs stress. Finally, more Glu and acetyl-CoA produced by the enhanced GSH cycle and the glycolytic pathway, respectively, accompanied by the up-regulation of Glu and Arg biosynthesis genes supported the increase in the PST contents under NPs exposure. This study established a data set involving physiological–biochemical changes and gene information about marine dinoflagellates responding to NPs, providing a data basis for further evaluating the ecological risk of NPs in marine environments.
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- 2024
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17. The function of chemical folic acid in calibration methods and neurodevelopmental disorders
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Ziqi Zhou, Meng Wang, Qiongli Fan, Yan Zhao, and Nianrong Wang
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functions ,folic acid ,biological structure ,detections ,neurodevelopmental disorder ,Chemistry ,QD1-999 - Abstract
Functional molecules have been attracting increasing attention in environmental and physiological studies. In particular, folic acid (FA) could be considered a key factor in estimating, adjusting, and making decisions in the treatment of neurodevelopmental disorders. It promotes the general significance and conceptual for considering FA molecular scientific research detections, which implies related advancement in both of biological structure and detection methods. Among these applications, the FA molecule acts as a coenzyme that incorporates carbon atoms and synthesizes purines and pyrimidines. Therefore, the calibration method has real applications and can be used as a sensing platform and for detection approaches, which conveys the internal relationship between the FA molecule and physiological characterization. This mini review briefly discusses multiple FA application fields and detection pathways and could supplement their utilization in anticipation of the onset of disease.
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- 2024
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18. Design and synthesis of guaiacol-based fibrate derivatives with potential hypolipidemic and liver protective actions
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Yan Zhang, Ling Ding, Yundong Xie, and Shipeng He
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Guaiacol-based fibrate derivatives ,Hypolipidemic ,Liver protection ,PPAR-α ,Chemistry ,QD1-999 - Abstract
Hypolipidemic and hepatoprotective effectives of the newly synthesized guaiacol-based fibrate derivatives were evaluated in Triton WR-1339-induced hyperlipidemic mice. All the target compounds were preliminary screened, in which compound T5 showed significant hypolipidemic effects, decreasing triglycerides (TG) and total cholesterol (TC), which was better than the positive drug clofibrate. Furthermore, compound T5 has a dose-dependent effect on the blood lipid lowering activity of hyperlipidemia mice, and hepatic transaminases (AST and ALT) induced by hyperlipidemia have a significant improvement effect. Histological examination of the liver of hyperlipidemic mice supplemented with T5 revealed a significant amelioration in hepatic lipid accumulation when compared with the effect of the positive drug clofibrate. The mechanism of lipid-lowering showed that T5 could significantly increase the expression of PPAR-α protein in the liver of hyperlipidemic mice. In addition, T5 can also improve the lipid peroxidation process induced by hyperlipidemia, reducing the level of malondialdehyde (MDA). These findings reinforced the effects of T5 as a hypolipidemic candidate compound with liver protective activity.
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- 2024
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19. Synthesis, biological evaluation and network pharmacology based studies of 1,3,4-oxadiazole bearing azaphenols as anticancer agents
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Guifen Chen, Minjie Zhang, Yafang Chen, Yan Zhang, Guoyong Luo, Yi Long, Wude Yang, and Xiang Yu
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Azophenol ,1,3,4-Oxadiazole ,Anticancer activity ,Network pharmacology ,Molecular docking ,Chemistry ,QD1-999 - Abstract
To discover novel and effective potential anticancer agents, a series of azophenol derivatives containing 1,3,4-oxadiazoles moiety was synthesized and investigated for their anticancer activities against several human cancer cell lines by MTT method. Their structures were characterized by 1H NMR, 13C NMR, IR and HRMS spectral analyses. Among the prepared compounds, 5df displayed significant anti-proliferative activity against HCT116 cancer cells with an IC50 value of 4.09 ± 0.04 µM. Moreover, this compound had low cytotoxicity against normal cells. Flow cytometric analysis indicated that compound 5df arrested the cell cycle at S phase and induced apoptosis in a dose-dependent manner. Additionally, network pharmacology analysis calculated that 5df might target several key proteins, including AKT serine/threonine kinase 1 (AKT1), SRC proto-oncogene, non-receptor tyrosine kinase (SRC). Furthermore, molecular docking study indicated that 5df exhibited potentially high binding affinity to these target proteins with binding energies lower than −8 kcal/mol. These findings provide valuable insights for the development of azophenol derivatives as potential anticancer agents.
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- 2024
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20. Synthesis of pH-Sensitive Nitrogen-Doped Carbon Dots with Biological Imaging Function and Their Application in Cu2+ and Fe2+ Determination by Ratiometric Fluorescent Probes
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Liucheng Guo, Luyao Li, Xingxian Wang, Yan Zhang, and Fengling Cui
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Chemistry ,QD1-999 - Published
- 2023
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21. Al@SiO2 Core–Shell Fillers Enhance Dielectric Properties of Silicone Composites
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Bin Huang, Yan Yu, Yan Zhao, Yunfeng Zhao, Lina Dai, Zhijie Zhang, and Hua-Feng Fei
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Chemistry ,QD1-999 - Published
- 2023
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22. Evaluation and Application of Efficient Gelled Acid for Carbonate Formation Fracturing
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Zhiheng Zhao, Yong Ma, Yan Zhang, Ke Lan, and Xingde Zhang
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Chemistry ,QD1-999 - Published
- 2023
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23. Mechanistic investigation of a D to N mutation in DAHP synthase that dictates carbon flux into the shikimate pathway in yeast
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Huayi Liu, Qingjie Xiao, Xinxin Wu, He Ma, Jian Li, Xufan Guo, Zhenyu Liu, Yan Zhang, and Yunzi Luo
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Chemistry ,QD1-999 - Abstract
Abstract 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHPS) is a key enzyme in the shikimate pathway for the biosynthesis of aromatic compounds. L-Phe and L-Tyr bind to the two main DAHPS isoforms and inhibit their enzyme activities, respectively. Synthetic biologists aim to relieve such inhibitions in order to improve the productivity of aromatic compounds. In this work, we reported a point mutant of yeast DHAPS, Aro3D154N, which retains the wild type enzyme activity but converts it highly inert to the inhibition by L-Phe. The Aro3 crystal structure along with the molecular dynamics simulations analysis suggests that the D154N mutation distant from the inhibitor binding cavity may reduce the binding affinity of L-Phe. Growth assays demonstrated that substitution of the conserved D154 with asparagine suffices to relieve the inhibition of L-Phe on Aro3, L-Tyr on Aro4, and the inhibitions on their corresponding homologues from diverse yeasts. The importance of our discovery is highlighted by the observation of 29.1% and 43.6% increase of yield for the production of tyrosol and salidroside respectively upon substituting ARO3 with ARO3 D154N . We anticipate that this allele would be used broadly to increase the yield of various aromatic products in metabolically diverse microorganisms.
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- 2023
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24. An Enhanced Aircraft Carrier Runway Detection Method Based on Image Dehazing
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Chenliang Li, Yunyang Wang, Yan Zhao, Cheng Yuan, Ruien Mao, and Pin Lyu
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carrier-based unmanned aerial vehicles ,deep learning ,runway detection ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Carrier-based Unmanned Aerial Vehicle (CUAV) landing is an extremely critical link in the overall chain of CUAV operations on ships. Vision-based landing location methods have advantages such as low cost and high accuracy. However, when an aircraft carrier is at sea, it may encounter complex weather conditions such as haze, which could lead to vision-based landing failures. This paper proposes a runway line recognition and localization method based on haze removal enhancement to solve this problem. Firstly, a haze removal algorithm using a multi-mechanism, multi-architecture network model is introduced. Compared with traditional algorithms, the proposed model not only consumes less GPU memory but also achieves superior image restoration results. Based on this, We employed the random sample consensus method to reduce the error in runway line localization. Additionally, extensive experiments conducted in the Airsim simulation environment have shown that our pipeline effectively addresses the issue of decreased detection accuracy of runway line detection algorithms in haze maritime conditions, improving the runway line localization accuracy by approximately 85%.
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- 2024
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25. The White Clover TrMYB33-TrSAMS1 Module Contributes to Drought Tolerance by Modulation of Spermidine Biosynthesis via an ABA-Dependent Pathway
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Youzhi Zhang, Xiaofang Qin, Zhirui He, Yan Zhang, Zhou Li, Gang Nie, Junming Zhao, Guangyan Feng, and Yan Peng
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white clover ,drought resistance ,MYB transcription factor ,S-adenosylmethionine synthase ,spermidine ,ABA dependent ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Spermidine is well known to accumulate in plants exposed to drought, but the regulatory network associated with its biosynthesis and accumulation and the underlying molecular mechanisms remain unclear. Here, we demonstrated that the Trifolium repens TrMYB33 relayed the ABA signal to modulate drought-induced spermidine production by directly regulating the expression of TrSAMS1, which encodes an S-adenosylmethionine synthase. This gene was identified by transcriptome and expression analysis in T. repens. TrSAMS1 overexpression and its pTRV-VIGS-mediated silencing demonstrated that TrSAMS1 is a positive regulator of spermidine synthesis and drought tolerance. TrMYB33 was identified as an interacting candidate through yeast one-hybrid library screening with the TrSAMS1 promoter region as the bait. TrMYB33 was confirmed to bind directly to the predicted TAACCACTAACCA (the TAACCA MYB binding site is repeated twice in tandem) within the TrSAMS1 promoter and to act as a transcriptional activator. Additionally, TrMYB33 contributed to drought tolerance by regulating TrSAMS1 expression and modulating spermidine synthesis. Additionally, we found that spermidine accumulation under drought stress depended on ABA and that TrMYB33 coordinated ABA-mediated upregulation of TrSAMS1 and spermidine accumulation. This study elucidated the role of a T. repens MYB33 homolog in modulating spermidine biosynthesis. The further exploitation and functional characterization of the TrMYB33–TrSAMS1 regulatory module can enhance our understanding of the molecular mechanisms responsible for spermidine accumulation during drought stress.
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- 2024
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26. WSPolyp-SAM: Weakly Supervised and Self-Guided Fine-Tuning of SAM for Colonoscopy Polyp Segmentation
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Tingting Cai, Hongping Yan, Kun Ding, Yan Zhang, and Yueyue Zhou
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weakly supervised learning ,polyp segmentation ,Segment Anything Model ,pseudo-label generation ,deep learning ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Ensuring precise segmentation of colorectal polyps holds critical importance in the early diagnosis and treatment of colorectal cancer. Nevertheless, existing deep learning-based segmentation methods are fully supervised, requiring extensive, precise, manual pixel-level annotation data, which leads to high annotation costs. Additionally, it remains challenging to train large-scale segmentation models when confronted with limited colonoscopy data. To address these issues, we introduce the general segmentation foundation model—the Segment Anything Model (SAM)—into the field of medical image segmentation. Fine-tuning the foundation model is an effective approach to tackle sample scarcity. However, current SAM fine-tuning techniques still rely on precise annotations. To overcome this limitation, we propose WSPolyp-SAM, a novel weakly supervised approach for colonoscopy polyp segmentation. WSPolyp-SAM utilizes weak annotations to guide SAM in generating segmentation masks, which are then treated as pseudo-labels to guide the fine-tuning of SAM, thereby reducing the dependence on precise annotation data. To improve the reliability and accuracy of pseudo-labels, we have designed a series of enhancement strategies to improve the quality of pseudo-labels and mitigate the negative impact of low-quality pseudo-labels. Experimental results on five medical image datasets demonstrate that WSPolyp-SAM outperforms current fully supervised mainstream polyp segmentation networks on the Kvasir-SEG, ColonDB, CVC-300, and ETIS datasets. Furthermore, by using different amounts of training data in weakly supervised and fully supervised experiments, it is found that weakly supervised fine-tuning can save 70% to 73% of annotation time costs compared to fully supervised fine-tuning. This study provides a new perspective on the combination of weakly supervised learning and SAM models, significantly reducing annotation time and offering insights for further development in the field of colonoscopy polyp segmentation.
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- 2024
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27. Roles of Thermosensitive Transient Receptor Channels TRPV1 and TRPM8 in Paclitaxel-Induced Peripheral Neuropathic Pain
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Wen-Wen Li, Yan Zhao, Huai-Cun Liu, Jiao Liu, Sun-On Chan, Yi-Fei Zhong, Tang-Yu Zhang, Yu Liu, Wei Zhang, Yu-Qi Xia, Xiao-Chun Chi, Jian Xu, Yun Wang, and Jun Wang
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transient receptor potential channel vanilloid1 (TRPV1) ,transient receptor potential melastatin8 (TRPM8) ,paclitaxel-induced peripheral neuropathic pain (PIPNP) ,menthol analgesia ,dorsal root ganglion (DRG) ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Paclitaxel, a microtubule-stabilizing chemotherapy drug, can cause severe paclitaxel-induced peripheral neuropathic pain (PIPNP). The roles of transient receptor potential (TRP) ion channel vanilloid 1 (TRPV1, a nociceptor and heat sensor) and melastatin 8 (TRPM8, a cold sensor) in PIPNP remain controversial. In this study, Western blotting, immunofluorescence staining, and calcium imaging revealed that the expression and functional activity of TRPV1 were upregulated in rat dorsal root ganglion (DRG) neurons in PIPNP. Behavioral assessments using the von Frey and brush tests demonstrated that mechanical hyperalgesia in PIPNP was significantly inhibited by intraperitoneal or intrathecal administration of the TRPV1 antagonist capsazepine, indicating that TRPV1 played a key role in PIPNP. Conversely, the expression of TRPM8 protein decreased and its channel activity was reduced in DRG neurons. Furthermore, activation of TRPM8 via topical application of menthol or intrathecal injection of WS-12 attenuated the mechanical pain. Mechanistically, the TRPV1 activity triggered by capsaicin (a TRPV1 agonist) was reduced after menthol application in cultured DRG neurons, especially in the paclitaxel-treated group. These findings showed that upregulation of TRPV1 and inhibition of TRPM8 are involved in the generation of PIPNP, and they suggested that inhibition of TRPV1 function in DRG neurons via activation of TRPM8 might underlie the analgesic effects of menthol.
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- 2024
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28. Genome-Wide Identification and Expression Analysis of the High-Mobility Group B (HMGB) Gene Family in Plant Response to Abiotic Stress in Tomato
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Jinhui Zheng, Huimeng Tang, Jianquan Wang, Yue Liu, Lianjing Ge, Guobiao Liu, Qinghua Shi, and Yan Zhang
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genome-wide identification ,expression pattern ,high-mobility group B (HMGB) ,plant growth ,abiotic stress ,tomato ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
High-mobility group B (HMGB) proteins are a class of non-histone proteins associated with eukaryotic chromatin and are known to regulate a variety of biological processes in plants. However, the functions of HMGB genes in tomato (Solanum lycopersicum) remain largely unexplored. Here, we identified 11 members of the HMGB family in tomato using BLAST. We employed genome-wide identification, gene structure analysis, domain conservation analysis, cis-acting element analysis, collinearity analysis, and qRT-PCR-based expression analysis to study these 11 genes. These genes were categorized into four groups based on their unique protein domain structures. Despite their structural diversity, all members contain the HMG-box domain, a characteristic feature of the HMG superfamily. Syntenic analysis suggested that tomato SlHMGBs have close evolutionary relationships with their homologs in other dicots. The promoter regions of SlHMGBs are enriched with numerous cis-elements related to plant growth and development, phytohormone responsiveness, and stress responsiveness. Furthermore, SlHMGB members exhibited distinct tissue-specific expression profiles, suggesting their potential roles in regulating various aspects of plant growth and development. Most SlHMGB genes respond to a variety of abiotic stresses, including salt, drought, heat, and cold. For instance, SlHMGB2 and SlHMGB4 showed positive responses to salt, drought, and cold stresses. SlHMGB1, SlHMGB3, and SlHMGB8 were involved in responses to two types of stress: SlHMGB1 responded to drought and heat, while SlHMGB3 and SlHMGB8 responded to salt and heat. SlHMGB6 and SlHMGB11 were solely regulated by drought and heat stress, respectively. Under various treatment conditions, the number of up-regulated genes significantly outnumbered the down-regulated genes, implying that the SlHMGB family may play a crucial role in mitigating abiotic stress in tomato. These findings lay a foundation for further dissecting the precise roles of SlHMGB genes.
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- 2024
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29. Effects of Dandelion Extract on Promoting Production Performance and Reducing Mammary Oxidative Stress in Dairy Cows Fed High-Concentrate Diet
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Yan Zhang, Musa Mgeni, Ziqing Xiu, Yu Chen, Juncai Chen, and Yawang Sun
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dairy cows ,high-concentrate diet ,LPS ,dandelion extract ,oxidative stress ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
This study investigated the effects of rumen bypass dandelion extract on the lactation performance, immune index, and mammary oxidative stress of lactating dairy cows fed a high-concentrate diet. This study used a complete randomized block design, and initial milk production, somatic cell counts, and parities were set as block factors. Sixty Holstein cows with similar health conditions and lactating periods (70 ± 15 d) were divided into three groups with 20 replicates per group. The treatments included the LCD group (low-concentrate diet, concentrate–forage = 4:6), HCD group (high-concentrate group, concentrate–forage = 6:4), and DAE group (dandelion aqueous extract group, HCD group with 0.5% DAE). The experimental period was 35 d, and cows were fed three times in the morning, afternoon, and night with free access to water. The results showed the following: (1) Milk production in the HCD and DAE groups was significantly higher (p < 0.05) than that in the LCD group from WK4, and the milk quality differed during the experimental period. (2) The HCD group’s pH values significantly differed (p < 0.01) from those of the LCD and DAE groups. (3) In WK2 and WK4 of the experimental period, the somatic cell counts of dairy cows in the HCD group were significantly higher (p < 0.05) than those in the DAE group. (4) The serum concentrations of 8-hydroxy-2’-deoxyguanosine (8-OHdG) and protein carbonyl (PC) in the HCD group were significantly higher (p < 0.05) than those in the LCD group. The activity of catalase (CAT) in the LCD and DAE groups was stronger (p < 0.01) than that in the HCD group. (5) The correlation analysis revealed significantly positive correlations between the plasma LPS concentration and serum concentrations of 8-OHdG (p < 0.01), PC (p < 0.01), and malondialdehyde (MDA, p < 0.05) and significantly negative correlations (p < 0.01) between the plasma LPS concentration and activities of CAT and superoxide dismutase. (6) Compared with that in the HCD and DAE groups, the mRNA expression of α, β, and κ casein and acetyl CoA carboxylase in bovine mammary epithelial cells was significantly higher (p < 0.05) in the LCD group, and the mRNA expression of fatty acid synthetase and stearoyl CoA desaturase in the LCD group was significantly higher (p < 0.01) than that in the HCD group. (7) Compared with that in the LCD and HCD groups, the mRNA expression of Nrf2 was significantly higher (p < 0.01) in the DAE group, and the mRNA expression of cystine/glutamate transporter and NAD (P) H quinone oxidoreductase 1 in the DAE group was significantly higher (p < 0.05) than that in the HCD group. Overall, feeding a high-concentrate diet could increase the milk yield of dairy cows, but the milk quality, rumen homeostasis, and antioxidative capability were adversely affected. The supplementation of DAE in a high-concentrate diet enhanced antioxidative capability by activating the Nrf2 regulatory factor and improved rumen homeostasis and production performance.
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- 2024
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30. Efficient Production of Self-Assembled Bioconjugate Nanovaccines against Klebsiella pneumoniae O2 Serotype in Engineered Escherichia coli
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Yan Zhang, Peng Sun, Ting Li, Juntao Li, Jingqin Ye, Xiang Li, Jun Wu, Ying Lu, Li Zhu, Hengliang Wang, and Chao Pan
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self-assembling ,bioconjugate nanovaccines ,Klebsiella pneumoniae O2 serotype ,mutation ,Chemistry ,QD1-999 - Abstract
Nanoparticles (NPs) have been surfacing as a pivotal platform for vaccine development. In our previous work, we developed a cholera toxin B subunit (CTB)-based self-assembled nanoparticle (CNP) and produced highly promising bioconjugate nanovaccines by loading bacterial polysaccharide (OPS) in vivo. In particular, the Klebsiella pneumoniae O2 serotype vaccine showcased a potent immune response and protection against infection. However, extremely low yields limited its further application. In this study, we prepared an efficient Klebsiella pneumoniae bioconjugate nanovaccine in Escherichia coli with a very high yield. By modifying the 33rd glycine (G) in the CNP to aspartate (D), we were able to observe a dramatically increased expression of glycoprotein. Subsequently, through a series of mutations, we determined that G33D was essential to increasing production. In addition, this increase only occurred in engineered E. coli but not in the natural host K. pneumoniae strain 355 (Kp355) expressing OPSKpO2. Next, T-cell epitopes were fused at the end of the CNP(G33D), and animal experiments showed that fusion of the M51 peptide induced high antibody titers, consistent with the levels of the original nanovaccine, CNP-OPSKpO2. Hence, we provide an effective approach for the high-yield production of K. pneumoniae bioconjugate nanovaccines and guidance for uncovering glycosylation mechanisms and refining glycosylation systems.
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- 2024
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31. Facile synthesis of azobenzene‐embedded conjugated macrocycles for optically switchable single‐crystal transistors and tunable supramolecular assemblies
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Dongdong Chang, Xuetao Xiao, Dongyue An, Rong Zhang, Xianyu Song, Yunqi Liu, Yan Zhao, and Xuefeng Lu
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azobenzene ,conjugated macrocycle ,host‐guest interaction ,photoresponsive transistors ,supramolecular assembly ,Chemistry ,QD1-999 ,Biology (General) ,QH301-705.5 - Abstract
Abstract A series of new π‐conjugated macrocycles (AzoM‐n‐E, n = 1–3) incorporating azobenzene units have been synthesized by a facile strategy in one‐pot reaction. The resultant azobenzene‐embedded macrocycles feature intrinsic photoresponsive behaviors and intriguing supramolecular assembling properties. The smallest macrocycle AzoM‐1‐E with a rigid planar conjugated backbone structure is used to prepare the single crystal transistors, showing reversible optical tunability. The moderate size macrocycle AzoM‐2‐E assembles into a dimer in the form of interpenetration through π‐π stacking between azobenzene units. The largest macrocycle AzoM‐3‐E with enhanced flexibility can adaptively assemble with various types of electron‐deficient guests accompanied by distortion of azobenzene. Typically, AzoM‐3‐E assembles with the planar F4‐TCNQ to form a tetragonal geometry by C‐F···π and π‐π interactions, while the assembly with ellipsoidal C70 via π‐π interactions induces AzoM‐3‐E to form a boat‐shaped geometry. This work will shed new light on the development of functional conjugated macrocycles in organic electronics.
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- 2023
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32. Efficient scarless skin regeneration enabled by loading micronized amnion in a bioinspired adhesive wound dressing
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Huicong Zhang, Mingyu Song, Changhong Hu, Zhiyi Zhang, Shuqi Zhang, Yan Zhang, Yingming Yang, Puxu Zhou, Liwen Zheng, Lan Li, Mengjie Mao, Yu Shrike Zhang, Ping Ji, and Ximu Zhang
- Subjects
amnion ,Andrias davidianus ,cell delivery ,cutaneous appendages ,scarless ,wound dressing ,Chemistry ,QD1-999 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Complete skin reconstruction is a hierarchical, physiological assembly process involving healing of the epidermis, dermis, vasculature, nerves, and cutaneous appendages. To date, few works have reported complete skin regeneration, particularly lacking vascular structures and hair follicles after full skin defects. In this study, a hydrogel derived from the skin secretion of Andrias davidianus (SSAD) that features adhesiveness was used as a bioactive scaffold to load micronized amnion (MA). The SSAD hydrogel was found to promote the migration and proliferation of amnion stem cells and human keratinocytes, as well as inhibit their apoptosis in vitro. In a rat full‐skin defect model, the regeneration of skin appendages was observed at the wound area, achieving scarless healing. Transcriptome analyses further validated that SSAD could positively regulate cell migration, proliferation, and differentiation. These functions might be attributed to the abundant growth factors present in the SSAD. Synergized by the delivery of MA, SSAD loaded with the MA could achieve a significantly better skin regeneration effect than SSAD or MA used alone, providing a simple yet highly effective means to obtain complete, scarless skin regeneration, suggesting favorable potential for clinical translation.
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- 2023
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33. Application progress of ultrasonication in flour product processing: A review
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Min Zhang, Xuanhong Chen, Yan Zhang, Ruoyu Zhang, Jun Liu, Bei Fan, Fengzhong Wang, and Long Li
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Flour product ,Ultrasonication ,Cavitation effect ,Fermentation ,Gluten structure ,Chemistry ,QD1-999 ,Acoustics. Sound ,QC221-246 - Abstract
Flour products played a vital role in the global diet structure. With the increasing demand for dietary health and food standardization, the staple food of flour products made from coarse grains due to its unique flavor and rich nutrition has become a trend and is favored by consumers. However, the lack of gluten protein in the raw materials prevented the formation of a stable gluten network structure, leading to the deterioration of the quality of flour products. Ultrasonic treatment, as an innovative food processing technology, generated energy during the action of ultrasonic waves that had a positive impact on the texture, organizational structure, or flavor characteristics of food. That was of great significance for improving food production efficiency, improving food processing quality, and extending food shelf life. This article applied ultrasonic technology to the processing of flour products from the perspective of promoting fermentation and improving production efficiency of flour products. The cavitation effect of ultrasound promoted the formation of gluten network structure, improved the rheology properties of dough and the quality of flour products by promoting protein cross-linking, improving the foaming and emulsifying stability of gluten protein, and promoting the growth and reproduction of yeast. All reviewed studies indicate that ultrasound would be a promising technology for producing high-quality surface products under appropriate conditions.
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- 2023
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34. Genome-Wide Identification and Expression Profiling of the ABF Transcription Factor Family in Wheat (Triticum aestivum L.)
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Fuhui Yang, Xuelian Sun, Gang Wu, Xiaoyan He, Wenxing Liu, Yongmei Wang, Qingyi Sun, Yan Zhao, Dengan Xu, Xuehuan Dai, Wujun Ma, and Jianbin Zeng
- Subjects
wheat (Triticum aestivum L.) ,TaABFs ,genome-wide analysis ,expression patterns ,regulatory network ,abiotic stress ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Members of the abscisic acid (ABA)-responsive element (ABRE) binding factor (ABF) and ABA-responsive element binding protein (AREB) families play essential roles in the regulation of ABA signaling pathway activity and shape the ability of plants to adapt to a range of stressful environmental conditions. To date, however, systematic genome-wide analyses focused on the ABF/AREB gene family in wheat are lacking. Here, we identified 35 ABF/AREB genes in the wheat genome, designated TaABF1–TaABF35 according to their chromosomal distribution. These genes were further classified, based on their phylogenetic relationships, into three groups (A–C), with the TaABF genes in a given group exhibiting similar motifs and similar numbers of introns/exons. Cis-element analyses of the promoter regions upstream of these TaABFs revealed large numbers of ABREs, with the other predominant elements that were identified differing across these three groups. Patterns of TaABF gene expansion were primarily characterized by allopolyploidization and fragment duplication, with purifying selection having played a significant role in the evolution of this gene family. Further expression profiling indicated that the majority of the TaABF genes from groups A and B were highly expressed in various tissues and upregulated following abiotic stress exposure such as drought, low temperature, low nitrogen, etc., while some of the TaABF genes in group C were specifically expressed in grain tissues. Regulatory network analyses revealed that four of the group A TaABFs (TaABF2, TaABF7, TaABF13, and TaABF19) were centrally located in protein–protein interaction networks, with 13 of these TaABF genes being regulated by 11 known miRNAs, which play important roles in abiotic stress resistance such as drought and salt stress. The two primary upstream transcription factor types found to regulate TaABF gene expression were BBR/BPC and ERF, which have previously been reported to be important in the context of plant abiotic stress responses. Together, these results offer insight into the role that the ABF/AREB genes play in the responses of wheat to abiotic stressors, providing a robust foundation for future functional studies of these genes.
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- 2024
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35. Simulation of the VOC Adsorption Mechanism on Activated Carbon Surface by Nitrogen-Containing Functional Groups
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Yan Zhang, Shuhui Zhang, Shaofeng Xu, Fan Cao, Xiaohan Ren, Qie Sun, Li Yang, Ronald Wennersten, and Ning Mei
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activated carbon ,functional group ,VOC ,DFT ,adsorption ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In this paper, the physical adsorption of volatile organic compounds (VOCs) such as methyl chloride (CH3Cl), carbon disulfide (CS2), dimethyl sulfide (C2H6S), and benzene (C6H6) by three models of activated carbon (without a functional group, with a pyridine-containing functional group, and with a pyrrole-containing functional group) was simulated. The surface electrostatic potential (ESP), physical adsorption energy, and non-covalent interaction between activated carbon and VOC molecules were analyzed based on the density functional theory (DFT). The effect mechanism of nitrogen-containing functional groups on VOC adsorption by activated carbon was determined. Our simulations showed that nitrogen-containing functional groups can change the surface ESP and polarity of activated carbon. The pyrrole functional group is conducive to CH3Cl and CS2 adsorption on the activated carbon plane, while the pyridine functional group is relatively small or even unfavorable for CH3Cl and CS2 adsorption on the activated carbon plane. The promotional effect of the pyrrole functional group on the adsorption of C2H6S is more significant than that of the pyridine functional group. The adsorption of C6H6 on activated carbon occurs through parallel-displaced π–π stacking interactions, in which functional groups have little influence on it. The adsorption energy of VOCs on the activated carbon plane is higher than that at the edge, so VOCs are more likely to be adsorbed on the activated carbon plane.
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- 2024
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36. Comparative Transcriptome Analysis Reveals the Genes and Pathways Related to Wheat Root Hair Length
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Jianbin Zeng, Yongmei Wang, Gang Wu, Qingyi Sun, Xiaoyan He, Xinyi Zhang, Xuelian Sun, Yan Zhao, Wenxing Liu, Dengan Xu, Xuehuan Dai, and Wujun Ma
- Subjects
wheat ,root hair length ,transcriptome sequencing ,differentially expressed genes (DEGs) ,pathway analysis ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Tube-like outgrowths from root epidermal cells, known as root hairs, enhance water and nutrient absorption, facilitate microbial interactions, and contribute to plant anchorage by expanding the root surface area. Genetically regulated and strongly influenced by environmental conditions, longer root hairs generally enhance water and nutrient absorption, correlating with increased stress resistance. Wheat, a globally predominant crop pivotal for human nutrition, necessitates the identification of long root hair genotypes and their regulatory genes to enhance nutrient capture and yield potential. This study focused on 261 wheat samples of diverse genotypes during germination, revealing noticeable disparities in the length of the root hair among the genotypes. Notably, two long root hair genotypes (W106 and W136) and two short root hair genotypes (W90 and W100) were identified. Transcriptome sequencing resulted in the development of 12 root cDNA libraries, unveiling 1180 shared differentially expressed genes (DEGs). Further analyses, including GO function annotation, KEGG enrichment, MapMan metabolic pathway analysis, and protein–protein interaction (PPI) network prediction, underscored the upregulation of root hair length regulatory genes in the long root hair genotypes. These included genes are associated with GA and BA hormone signaling pathways, FRS/FRF and bHLH transcription factors, phenylpropanoid, lignin, lignan secondary metabolic pathways, the peroxidase gene for maintaining ROS steady state, and the ankyrin gene with diverse biological functions. This study contributes valuable insights into modulating the length of wheat root hair and identifies candidate genes for the genetic improvement of wheat root traits.
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- 2024
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37. Bovine Pluripotent Stem Cells: Current Status and Prospects
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Lanxin Chen, Bo Tang, Guanghong Xie, Rui Yang, Boyang Zhang, Yueqi Wang, Yan Zhang, Daozhen Jiang, and Xueming Zhang
- Subjects
cattle ,embryonic stem cells ,potential stem cells ,induced pluripotent stem cells ,reprogramming ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Pluripotent stem cells (PSCs) can differentiate into three germ layers and diverse autologous cell lines. Since cattle are the most commonly used large domesticated animals, an important food source, and bioreactors, great efforts have been made to establish bovine PSCs (bPSCs). bPSCs have great potential in bovine breeding and reproduction, modeling in vitro differentiation, imitating cancer development, and modeling diseases. Currently, bPSCs mainly include bovine embryonic stem cells (bESCs), bovine induced pluripotent stem cells (biPSCs), and bovine expanded potential stem cells (bEPSCs). Establishing stable bPSCs in vitro is a critical scientific challenge, and researchers have made numerous efforts to this end. In this review, the category of PSC pluripotency; the establishment of bESCs, biPSCs, and bEPSCs and its challenges; and the application outlook of bPSCs are discussed, aiming to provide references for future research.
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- 2024
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38. DNA Methylation and Chromatin Accessibility Impact Subgenome Expression Dominance in the Common Carp (Cyprinus carpio)
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Shuang-Ting Yu, Ran Zhao, Xiao-Qing Sun, Ming-Xi Hou, Yi-Ming Cao, Jin Zhang, Ying-Jie Chen, Kai-Kuo Wang, Yan Zhang, Jiong-Tang Li, and Qi Wang
- Subjects
polyploidy ,subgenome expression ,DNA methylation ,chromatin accessibility ,homoeologous gene ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
DNA methylation and chromatin accessibility play important roles in gene expression, but their function in subgenome expression dominance remains largely unknown. We conducted comprehensive analyses of the transcriptome, DNA methylation, and chromatin accessibility in liver and muscle tissues of allotetraploid common carp, aiming to reveal the function of epigenetic modifications in subgenome expression dominance. A noteworthy overlap in differential expressed genes (DEGs) as well as their functions was observed across the two subgenomes. In the promoter and gene body, the DNA methylation level of the B subgenome was significantly different than that of the A subgenome. Nevertheless, differences in DNA methylation did not align with changes in homoeologous biased expression across liver and muscle tissues. Moreover, the B subgenome exhibited a higher prevalence of open chromatin regions and greater chromatin accessibility, in comparison to the A subgenome. The expression levels of genes located proximally to open chromatin regions were significantly higher than others. Genes with higher chromatin accessibility in the B subgenome exhibited significantly elevated expression levels compared to the A subgenome. Contrastingly, genes without accessibility exhibited similar expression levels in both subgenomes. This study contributes to understanding the regulation of subgenome expression dominance in allotetraploid common carp.
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- 2024
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39. Modulation of Tau Pathology in Alzheimer’s Disease by Dietary Bioactive Compounds
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Huahua Shi and Yan Zhao
- Subjects
tau pathology ,Alzheimer’s disease ,dietary bioactive compounds ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Tau is a microtubule-associated protein essential for microtubule assembly and stability in neurons. The abnormal intracellular accumulation of tau aggregates is a major characteristic of brains from patients with Alzheimer’s disease (AD) and other tauopathies. In AD, the presence of neurofibrillary tangles (NFTs), which is composed of hyperphosphorylated tau protein, is positively correlated with the severity of the cognitive decline. Evidence suggests that the accumulation and aggregation of tau cause synaptic dysfunction and neuronal degeneration. Thus, the prevention of abnormal tau phosphorylation and elimination of tau aggregates have been proposed as therapeutic strategies for AD. However, currently tau-targeting therapies for AD and other tauopathies are limited. A number of dietary bioactive compounds have been found to modulate the posttranslational modifications of tau, including phosphorylation, small ubiquitin-like modifier (SUMO) mediated modification (SUMOylation) and acetylation, as well as inhibit tau aggregation and/or promote tau degradation. The advantages of using these dietary components over synthetic substances in AD prevention and intervention are their safety and accessibility. This review summarizes the mechanisms leading to tau pathology in AD and highlights the effects of bioactive compounds on the hyperphosphorylation, aggregation and clearance of tau protein. The potential of using these bioactive compounds for AD prevention and intervention is also discussed.
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- 2024
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40. Antibacterial Hydrophilic ZnO Microstructure Film with Underwater Oleophobic and Self-Cleaning Antifouling Properties
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Yannan Li, Yu Xue, Jie Wang, Dan Zhang, Yan Zhao, and Jun-Jie Liu
- Subjects
self-cleaning ,super-hydrophilic ,oleophobic ,zinc oxide ,antibacterial ,Chemistry ,QD1-999 - Abstract
Super-hydrophilic and oleophobic functional materials can prevent pollution or adsorption by repelling oil, and have good circulation. However, traditional strategies for preparing these functional materials either use expensive fabrication machines or contain possibly toxic organic polymers, which may prohibit the practical application. The research of multifunctional ZnO microstructures or nanoarrays thin films with super-hydrophilic, antifouling, and antibacterial properties has not been reported yet. Moreover, the exploration of underwater oleophobic and self-cleaning antifouling properties in ZnO micro/nanostructures is still in its infancy. Here, we prepared ZnO microstructured films on fluorine-doped tin oxide substrates (F-ZMF) for the development of advanced self-cleaning type super-hydrophilic and oleophobic materials. With the increase of the accelerators, the average size of the F-ZMF microstructures decreased. The F-ZMF shows excellent self-cleaning performance and hydrophilic (water contact angle ≤ 10°) and oleophobic characteristics in the underwater antifouling experiment. Under a dark condition, F-ZMF-4 showed good antibacterial effects against Staphylococcus aureus (S. aureus) and Escherichia coli (E. coli) with inhibition rates of 99.1% and 99.9%, respectively. This study broadens the application scope of ZnO-based material and provides a novel prospect for the development of self-cleaning super-hydrophilic and oleophobic materials.
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- 2024
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41. Computational Integral Imaging Reconstruction Based on Generative Adversarial Network Super-Resolution
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Wei Wu, Shigang Wang, Wanzhong Chen, Zexin Qi, Yan Zhao, Cheng Zhong, and Yuxin Chen
- Subjects
computational integral imaging reconstruction ,deep learning ,super-resolution ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
To improve acquisition efficiency and achieve super high-resolution reconstruction, a computational integral imaging reconstruction (CIIR) method based on the generative adversarial network (GAN) network is proposed. Firstly, a sparse camera array is used to generate an elemental image array of the 3D object. Then, the elemental image array is mapped to a low-resolution sparse view image. Finally, a lite GAN super-resolution network is presented to up-sample the low-resolution 3D images to high-resolution 3D images with realistic image quality. By removing batch normalization (BN) layers, reducing basic blocks, and adding intra-block operations, better image details and faster generation of super high-resolution images can be achieved. Experimental results demonstrate that the proposed method can effectively enhance the image quality, with the structural similarity (SSIM) reaching over 0.90, and can also reduce the training time by about 20%.
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- 2024
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42. Improving the gel properties of salted egg white/cooked soybean protein isolate composite gels by ultrasound treatment: Study on the gelling properties and structure
- Author
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Xiaojuan Xin, Wei Qiu, Hui Xue, Guowen Zhang, Hui Hu, Yan Zhao, and Yonggang Tu
- Subjects
Ultrasound treatment ,Salted egg white ,Cooked soy protein isolate ,Gelation ,Chemistry ,QD1-999 ,Acoustics. Sound ,QC221-246 - Abstract
In this study, the effects of ultrasound treatment on the texture, physicochemical properties and protein structure of composite gels prepared by salted egg white (SEW) and cooked soybean protein isolate (CSPI) at different ratios were investigated. With the increased SEW addition, the ζ-potential absolute values, soluble protein content, surface hydrophobicity and swelling ratio of composite gels showed overall declining trends (P
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- 2023
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43. Crystallization- and Metal-Driven Selection of Discrete Macrocycles/Cages and Their Metallosupramolecular Polymers from Dynamic Systemic Networks
- Author
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Yan Zhang, Arie van der Lee, and Mihail Barboiu
- Subjects
supramolecular chemistry ,macrocycles ,cages ,dynamic chemistry ,crystallization ,Chemistry ,QD1-999 - Abstract
Reversible imine- and metal-coordination reactions are dynamic enough to produce complex libraries of macrocycles, cages, and supramolecular polymers in solution, from which amplification effects have been identified in solution or during crystallization in response to ligand- and metal-driven selection modes. Crystallization-driven selection can lead to the amplification of unexpected metallosupramolecular architectures. The addition of Ag+ triggered the change of the optimal components, so that the crystallization process showed different ligand preferences than in solution. The most packed constituents are amplified in the solid state, taking into account the optimal coordination of metal ions together with non-specific non-covalent interactions between the macrocycle packed in dimers or trimers in the solid state.
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- 2022
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44. Analysis of Chromatin Accessibility and DNA Methylation to Reveal the Functions of Epigenetic Modifications in Cyprinus carpio Gonads
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Mingxi Hou, Qi Wang, Ran Zhao, Yiming Cao, Jin Zhang, Xiaoqing Sun, Shuangting Yu, Kaikuo Wang, Yingjie Chen, Yan Zhang, and Jiongtang Li
- Subjects
sex ,transcription factors ,motif enrichment ,methylome ,expression regulation ,common carp ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Epigenetic modifications are critical in precisely regulating gene expression. The common carp (Cyprinus carpio) is an economically important fish species, and females exhibit faster growth rates than males. However, the studies related to epigenetic modifications in the common carp gonads are limited. In this study, we conducted the Assay for Transposase Accessible Chromatin sequencing (ATAC-seq) and Bisulfite sequencing (BS-seq) to explore the roles of epigenetic modifications in the common carp gonads. We identified 84,207 more accessible regions and 77,922 less accessible regions in ovaries compared to testes, and some sex-biased genes showed differential chromatin accessibility in their promoter regions, such as sox9a and zp3. Motif enrichment analysis showed that transcription factors (TFs) associated with embryonic development and cell proliferation were heavily enriched in ovaries, and the TFs Foxl2 and SF1 were only identified in ovaries. We also analyzed the possible regulations between chromatin accessibility and gene expression. By BS-seq, we identified 2087 promoter differentially methylated genes (promoter-DMGs) and 5264 gene body differentially methylated genes (genebody-DMGs) in CG contexts. These genebody-DMGs were significantly enriched in the Wnt signaling pathway, TGF-beta signaling pathway, and GnRH signaling pathway, indicating that methylation in gene body regions could play an essential role in sex maintenance, just like methylation in promoter regions. Combined with transcriptomes, we revealed that the expression of dmrtb1-like, spag6, and fels was negatively correlated with their methylation levels in promoter regions. Our study on the epigenetic modifications of gonads contributes to elucidating the molecular mechanism of sex differentiation and sex maintenance in the common carp.
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- 2023
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45. Catalytic Hydrogenation Property of Methyl Benzoate to Benzyl Aldehyde over Manganese-Based Catalysts with Appropriate Oxygen Vacancies
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Pengxiang Gao, Xiaoran Liu, Xindong Mu, and Yan Zhang
- Subjects
methyl benzoate ,benzaldehyde ,manganese based catalyst ,catalytic hydrogenation ,oxygen vacancy ,Chemical technology ,TP1-1185 ,Chemistry ,QD1-999 - Abstract
The synthesis of benzaldehyde, a compound widely utilized in food, medicine, and cosmetics, was achieved through a one-step catalytic hydrogenation using the cost-effective raw material, methyl benzoate. This process aligns with the principles of atom economy and green production. Despite the development of numerous high-performance catalysts by scholars, the challenge remains in achieving lower reaction temperatures, ideally below 400 °C. In this study, a series of MnOx/γ-Al2O3 catalysts were meticulously prepared using the precipitation-impregnation method. These catalysts featured supports calcined at various temperatures and distinct manganese active components. Characterization techniques such as X-ray diffraction (XRD), N2 physical adsorption, Fourier transform infrared spectroscopy (FT-IR), X-ray photoelectron spectroscopy (XPS), H2 temperature programmed reduction (H2-TPR), and NH3 temperature-programmed desorption (NH3-TPD) were employed to analyze the structure and surface properties of the catalysts. Notably, the optimized reaction temperature was found to be 360 °C. The catalyst exhibited the most favorable performance when the calcination temperature of the support was 500 °C and the Mn/Al molar ratio reached 0.18. Under these conditions, the catalyst demonstrated the most suitable oxygen vacancy concentration, yielding impressive results: a conversion rate of 87.90% and a benzaldehyde selectivity of 86.1%. These achievements were attained at 360 °C, atmospheric pressure, a hydrogen to methyl benzoate molar ratio of 40:1, and a Gas Hourly Space Velocity (GHSV) of 800 h−1. This research underscores the potential for optimizing catalysts to enhance the efficiency and sustainability of benzaldehyde synthesis.
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- 2023
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46. Phenylbutyrate and Dichloroacetate Enhance the Liquid-Stored Boar Sperm Quality via PDK1 and PDK3
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Zhihua Guo, Yan Zhang, Anqi Huang, Qingyong Ni, and Changjun Zeng
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boar ,liquid storage sperm ,PDKs ,DCA ,4-PBA ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Artificial insemination (AI) with liquid-stored semen is the most prevalent and efficient assisted reproduction technique in the modern pork industry. Pyruvate dehydrogenase complex component X (PDHX) was demonstrated to be associated with sperm metabolism and affected the boar sperm viability, motility, and fertility. Pyruvate Dehydrogenase Kinases (PDKs) are the key metabolic enzymes that regulate pyruvate dehydrogenase complex (PDHC) activity and also the conversion from glycolysis to oxidative phosphorylation. In the present study, two PDK inhibitors, Dichloroacetate (DCA) and Phenylbutyrate (4-PBA), were added to an extender and investigated to determine their regulatory roles in liquid-stored boar sperm at 17 °C. The results indicated that PDK1 and PDK3 were predominantly located at the head and flagella of the boar sperm. The addition of 2 mM DCA and 0.5 mM 4-PBA significantly enhanced the sperm motility, plasma membrane integrity (PMI), mitochondrial membrane potential (MMP), and ATP content. In addition, DCA and 4-PBA exerted their effects by inhibiting PDK1 and PDK3, respectively. In conclusion, DCA and 4-PBA were found to regulate the boar sperm metabolic activities via PDK1 and PDK3. These both can improve the quality parameters of liquid-stored boar sperm, which will help to improve and optimize liquid-stored boar semen after their addition in the extender.
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- 2023
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47. Ginseng Stem-and-Leaf Saponins Mitigate Chlorpyrifos-Evoked Intestinal Toxicity In Vivo and In Vitro: Oxidative Stress, Inflammatory Response and Apoptosis
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Silu Liu, Xiaoying Zhu, Hongyan Pei, Yan Zhao, Ying Zong, Weijia Chen, Zhongmei He, and Rui Du
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OP ,GSLS ,CPF ,oxidative stress ,enterotoxicity ,inflammatory response ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
In recent years, the phenomenon of acute poisoning and organ damage caused by organophosphorus pesticides (OPs) has been a frequent occurrence. Chlorpyrifos (CPF) is one of the most widely used organophosphorus pesticides. The main active components of ginseng stems and leaves are total ginseng stem-and-leaf saponins (GSLSs), which have various biological effects, including anti-inflammatory, antioxidant and anti-tumor activities. We speculate that these could have great potential in the treatment of severe diseases and the relief of organophosphorus-pesticide-induced side effects; however, their mechanism of action is still unknown. At present, our work aims to evaluate the effects of GSLSs on the antioxidation of CPF in vivo and in vitro and their potential pharmacological mechanisms. Mice treated with CPF (5 mg/kg) showed severe intestinal mucosal injury, an elevated diamine oxidase (DAO) index, the decreased expression of occlusive protein-1 (ZO-1) and occlusive protein, an impaired intestinal mucosal oxidation system and intestinal villi relaxation. In addition, chlorpyrifos exposure significantly increased the contents of the inflammatory factor TNF-α and the oxidative-stress-related indicators superoxide dismutase (SOD), catalase (CAT), glutathione SH (GSH), glutathione peroxidase (GSH-PX), reactive oxygen species (ROS) and total antioxidant capacity (T-AOC); elevated the level of lipid peroxide malondialdehyde (MDA); reversed the expression of Bax and caspase; and activated NF-κB-related proteins. Interestingly, GSLS supplementation at doses of 100 and 200 mg/kg significantly reversed these changes after treatment. Similar results were observed in cultured RAW264.7 cells. Using flow cytometry, Hoechst staining showed that GSLSs (30 μg/mL, 60 μg/mL) could improve the cell injury and apoptosis caused by CPF and reduce the accumulation of ROS in cells. In conclusion, GSLSs play a protective role against CPF-induced enterotoxicity by inhibiting NF-κB-mediated apoptosis and alleviating oxidative stress and inflammation.
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- 2023
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48. Transcriptome Analysis Revealed Potential Genes of Skeletal Muscle Thermogenesis in Mashen Pigs and Large White Pigs under Cold Stress
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Wenxia Li, Yufen Chen, Yunting Zhang, Ning Zhao, Wanfeng Zhang, Mingyue Shi, Yan Zhao, Chunbo Cai, Chang Lu, Pengfei Gao, Xiaohong Guo, Bugao Li, Sung-Woo Kim, Yang Yang, and Guoqing Cao
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cold stress ,skeletal muscle ,transcriptome ,Large White pig ,Mashen pig ,PRSS8 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Pigs are susceptible to cold stress due to the absence of brown fat caused by the partial deletion of uncoupling protein 1 during their evolution. Some local pig breeds in China exhibit potential cold adaptability, but research has primarily focused on fat and intestinal tissues. Skeletal muscle plays a key role in adaptive thermogenesis in mammals, yet the molecular mechanism of cold adaptation in porcine skeletal muscle remains poorly understood. This study investigated the cold adaptability of two pig breeds, Mashen pigs (MS) and Large White pigs (LW), in a four-day cold (4 °C) or normal temperature (25 °C) environment. We recorded phenotypic changes and collected blood and longissimus dorsi muscle for transcriptome sequencing. Finally, the PRSS8 gene was randomly selected for functional exploration in porcine skeletal muscle satellite cells. A decrease in body temperature and body weight in both LW and MS pigs under cold stress, accompanied by increased shivering frequency and respiratory frequency, were observed. However, the MS pigs demonstrated stable physiological homeostasis, indicating a certain level of cold adaptability. The LW pigs primarily responded to cold stress by regulating their heat production and glycolipid energy metabolism. The MS pigs exhibited a distinct response to cold stress, involving the regulation of heat production, energy metabolism pathways, and robust mitochondrial activity, as well as a stronger immune response. Furthermore, the functional exploration of PRSS8 in porcine skeletal muscle satellite cells revealed that it affected cellular energy metabolism and thermogenesis by regulating ERK phosphorylation. These findings shed light on the diverse transcriptional responses of skeletal muscle in LW and MS pigs under cold stress, offering valuable insights into the molecular mechanisms underlying cold adaptation in pigs.
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- 2023
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49. Research on Flexible Traceability System of Agaricus bisporus Supply Chain
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Xingguo Zhang, Pingzeng Liu, Yan Zhang, Feihu Sun, Ao Gong, and Chao Zhang
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blockchain ,flexible traceability ,multi-chain model ,Hyperledger Fabric ,Agaricus bisporus traceability ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The supply chain of Agaricus bisporus constitutes a complex, multi-layered production and distribution network, encompassing various stages. Challenges in information transmission and process integration between these stages often lead to reduced query efficiency, subsequently compromising the credibility of traceability results and the flexibility of the system. In traditional traceability systems, data for multiple service recipients may be stored on a single blockchain, resulting in complex data structures and making it challenging for users to conduct effective queries and analyses. To address this issue, this paper proposes a solution: a multi-chain tracing model tailored for stakeholders in the traceability process of Agaricus bisporus. This model establishes public chains, enterprise chains, and supervision chains for consumers, enterprises, and regulatory authorities, respectively, to enhance system storage and query efficiency. Additionally, leveraging the modular design of Hyperledger Fabric, the paper optimizes and upgrades the supply chain of Agaricus bisporus. The proposed multi-chain tracing model, designed for traceability for stakeholders, undergoes rigorous validation. Analysis and application results demonstrate that this approach significantly improves the query efficiency and credibility of traceability information while markedly enhancing system flexibility.
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- 2023
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50. Improved Broad Learning System for Birdsong Recognition
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Jing Lu, Yan Zhang, Danjv Lv, Shanshan Xie, Yixing Fu, Dan Lv, Youjie Zhao, and Zhun Li
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broad learning system ,birdsong recognition ,feature sequence ,residual blocks ,mutual similarity criterion ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Birds play a vital and indispensable role in biodiversity and environmental conservation. Protecting bird diversity is crucial for maintaining the balance of nature, promoting ecosystem health, and ensuring sustainable development. The Broad Learning System (BLS) exhibits an excellent ability to extract highly discriminative features from raw inputs and construct complex feature representations by combining feature nodes and enhancement nodes, thereby enabling effective recognition and classification of various birdsongs. However, within the BLS, the selection of feature nodes and enhancement nodes assumes critical significance, yet the model lacks the capability to identify high quality network nodes. To address this issue, this paper proposes a novel method that introduces residual blocks and Mutual Similarity Criterion (MSC) layers into BLS to form an improved BLS (RMSC-BLS), which makes it easier for BLS to automatically select optimal features related to output. Experimental results demonstrate the accuracy of the RMSC-BLS model for the three construction features of MFCC, dMFCC, and dsquence is 78.85%, 79.29%, and 92.37%, respectively, which is 4.08%, 4.50%, and 2.38% higher than that of original BLS model. In addition, compared with other models, our RMSC-BLS model shows superior recognition performance, has higher stability and better generalization ability, and provides an effective solution for birdsong recognition.
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- 2023
- Full Text
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