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The 1:2 complex of 1,4-dimethylpiperazine mono-betaine (MBPZ) with squaric acid (H2SQ) has been characterised by single-crystal X-ray analysis, FTIR and NMR spectroscopies, and by DFT calculations. The crystals are monoclinic, space groupP21/c. Two MBPZ cations and four hydrogen squarate anions (HSQ− ) are linked by strong O(1)–H…O(13) (2.525(4) Å), O(14)–H…O(21) (2.511(4) Å) and N(4)–H…O(23) (2.607(3) Å) hydrogen bonds into a cyclamer. In turn, the cyclamers are linked into a helixthrough two O(24)–H…O(11) hydrogen bonds of 2.516(4) Å. The piperazinium ring has a chair conformation with N(4)–CH3and N(1)–CH2COOH substituents in the equatorial positions, and N(1)–CH3in the axial position. The FTIR spectrum is consistent with the crystal data. Two models of the 1:2 complex of MBPZ with H2SQ have been optimised at the B3LYP/6-311++G(d,p) level of theory and have been used to calculate harmonic IR frequencies. One of the models (2) is dominated by electrostatic attraction between NH(4)+and HSQ− , whereas in the other (3) squaric acid interacts with a zwitterionic MBPZ through the O–H…O and O–H…N hydrogen bonds. [ABSTRACT FROM PUBLISHER]

Abstract: The location of H-atoms sites in carboxylic-acid dimers has been related to the crystal environment. It has been shown that the H-sites are coupled to the orientation of carboxylic-acid groups. Consequently, the H-bonds can be strained and the H-atoms destabilized and disordered by the symmetric crystal environment of symmetric molecules. The coupling results in the O⋯O distance contraction by about 0.015Å in carboxylic acids with disordered H-atoms, this magnitude calculated from H-bonds strain being consistent with that observed in crystal structures. This strain analysis provides an easy method of locating the H-atoms in hydrogen bonds between carboxyl groups, verifying experimental data determined by X-ray diffraction, calculating the magnitudes of O⋯O distance contraction and molecular reorientations induced by the H-atoms disordering structural effects, and predicting properties related to the H-atom dynamics. The survey of carboxylic-acid structures corroborates the effects of the molecular environment on the H-sites and hydrogen-bond dimensions. [Copyright &y& Elsevier]

Abstract: Intermolecular interactions and the role of fluorine substitution have been investigated for a halogenated-ethane anesthetic. 2-Bromo-2-chloro-1,1,1-trifluoroethane, BrClCHCF3 (Halothane), has been in situ pressure frozen in a diamond anvil cell and its structure determined by single-crystal X-ray diffraction at 1.85(5)GPa/296K. Crystal is triclinic, space group . In this racemic structure the enantiomorphic molecules are substitutionally disordered at the same general positions in that way that bromine and chlorine atoms occupy the same site at the 50:50 ratio. Despite the fact that only the Br and Cl atoms are disordered, the crystal packing is dominated by halogen⋯halogen and halogen⋯hydrogen interactions. This X-ray diffraction study provides structural explanation of considerably increased vapor pressure of Halothane compared to its hydrogenated analogue. [Copyright &y& Elsevier]

A novel anhydrous 1:1 and 2:1 complexes of quinoline betaine (QB) with perchloric acid have been prepared and their structures determined by X-ray diffraction. The 1:1 complex betaine is protonated and the carboxylate group forms a hydrogen bond with the ClO4 ion: O⋯O distance is 2.820(3) A˚. In the 2:1 complex, the carboxylate group of a pair of QB molecules are bridged by a proton to form dimeric cation in non-planar configuration, [(QB)2H]+, featuring a very strong hydrogen bond of the length 2.453(3) A˚. The FTIR spectrum of the 1:1 complex shows a strong absorption at ca. 3100 cm−1 due to the νOH vibration. Broad and intense absorption in the 1500–400 cm−1 region in the spectrum of the 2:1 complex is typical for the very short hydrogen bonds. B3LYP calculations predict slightly shorter hydrogen bonds with different orientation of the ring vs. COOH group than these observed in crystals. [Copyright &y& Elsevier]

Abstract: The ionophoric antibiotic lasalocid acid has been converted to a novel 6-bromohexyl ester (LASBR) and its structure has been determined in the crystal by X-ray diffraction and in solution by NMR and FT-IR methods. In the crystal two symmetry-independent LASBR molecules are present. The structure of LASBR in solution is slightly different because the strongest intramolecular C(1)Hogen bond in the pseudo-aromatic ring becomes partially broken and a new hydrogen bond between O(4)H and carbonyl group C(13)ed. LASBR forms complexes with Li+, Na+ and K+ cations of exclusively 1:1 stoichiometry. The structures of complexes have been studied and visualized using semi-empirical calculation based on results of spectrometric and spectroscopic investigation. It is demonstrated that in contrast to lasalocid acid the novel ester forms preferential complexes with Li+ cation. [Copyright &y& Elsevier]

• Structure of 8 - hydroxyquinoline betaine monohydrate was solved by X-ray. • The one proton of disordered water molecules is shared between two half-occupied sides. • Three broad bands classify the FTIR spectrum as the ABC type. • PED are used to assign the bands in the vibrational spectrum. • Hirshfeld surface, Mulliken atomic charges, MEP, HOMO-LUMO were computed. • The assignment of 1H and 13C resonance signals are based on the 2D measurements. Molecular structure and properties of 8-hydroxyquinoline betaine monohydrate (1-carboxymethyl-8-hydroxyquinolinium inert salt monohydrate) were studied by X-ray diffraction, DFT calculations, FTIR and NMR spectra. In the crystals, 8-hydroxyquinoline betaine and water are bonded by an intermolecular and asymmetric COO···H 2 O hydrogen bond of 2.782(3) Å. The water molecules are disordered so that one of the proton is shared between two half occupied sites. The hydroxyl group of quinoline is bonded to the neighboring molecule by the O−H···OOC hydrogen bond of 2.571(3) Å. The molecular geometry, Hirshfeld surface, Mulliken atomic charge distribution, molecular electrostatic potential, frontier molecular orbitals, vibrational wavenumbers, magnetic isotropic shielding constants were determined using the density functional theory (DFT/B3LYP) with 6–311++G(d,p) basis set. The FTIR spectrum shows a characteristic ABC structure, typical of medium-short hydrogen bonds. The potential energy distribution (PED) was used to assign the bands in the vibrational spectrum. 1H and 13C NMR spectra were analyzed. [Display omitted] [ABSTRACT FROM AUTHOR]

Abstract: Intermolecular interactions in a synthesized C-acid, 4-nitrophenyl[bis(ethylsulfonyl)]methane have been analysed and its structure determined by X-ray diffraction. The molecular packing in the crystal is governed by CH…O. The dimensions of the hydrogen bonds and the shortest non-bonded distances are also determined. The possible implications in the formation of the hydrogen bonded complexes with the strong organic bases are also discussed. [Copyright &y& Elsevier]

Abstract: Crystal structure of monensin A rubidium salt dihydrate, [Rb(C36H61O11)·2H2O], has been studied by X-ray diffraction, FT-IR spectroscopy and PM5 semiempirical methods. The crystal space group is P212121 with a =12.6153(7), b =16.4841(10), c =19.4840(12) and Z =4. The Rb–O bond lengths are between 2.788(7) and 2.901(6)Å. The carboxyl group of monensin A is deprotonated and engaged in two intramolecular O(11)–H···O(1) of 2.52(1)Å and O(10)–H···O(2) of 2.60(1)Å hydrogen bonds with hydroxyl groups, accompanied with formation of a pseudo-cyclic structure. This structure is stabilised by the coordination of the Rb+ cation by oxygen atoms. Two water molecules are involved in the weak intermolecular hydrogen bond between the different species forming a supramolecule. The IR spectrum of the crystal is consistent with the results obtained by the X-ray study and provides spectroscopic evidence for the complex formation. The calculated structure and the structural parameters of the monensin A rubidium salt are comparable with those determined by the X-ray study. [Copyright &y& Elsevier]

Abstract: Azido-tetrazolo tautomeric conversions have been investigated by NMR, X-ray and semiempirical calculations in a series of new 7(8)-methylated azolopyridazines. The transannular effects of the triazole- and tetrazole-ring fusion with pyridazine have been compared, and the thermodynamic equilibrium of the 7- to 8-methyl conversions of the 6-azido-7(8)-methyltetrazolopyridazines monitored in the function of temperature by 1H NMR shifts of the pyridazine hydrogens. General rules governing the azido-tetrazolo conversions in azolopyridazines have been formulated and based on the molecular structure and strains induced in the pyridazine ring by its substituents. [Copyright &y& Elsevier]

The molecular structure of 1,2-di(3-hydroxymethylpyridinium)ethane dibromide ( 1 ) has been characterized by X-ray diffraction, B3LYP/6-311++G(d,p) calculations, FTIR, Raman and NMR spectra. The crystals are monoclinic, space group C2/c . 1,2-Di(3-hydroxymethylpyridinium)ethane dication and hydrogen-bonded bromide anions in crystals are located at the inversion center. The both CH 2 OH groups are engaged in two equal length hydrogen bonds with bromide anions. Two structures ( 2 ) and ( 3 ) were optimized at the B3LYP/6-311++G(d,p) level of theory. The optimized complex ( 2) resembles the crystal structure, while complex ( 3 ) is preferred energetically. The O⋯Br − hydrogen bonds distances are: 3.289(2) Å in crystals ( 1 ), but in the optimized structures ( 2 ) and ( 3 ) they are 3.303 Å and 3.461 Å, respectively. The investigated complex is additionally stabilized by the N + ⋯Br − electrostatic attractions. The potential energy distributions (PED) were used for the assignments of IR and Raman frequencies in the experimental and calculated spectra of the title compound. The FTIR spectrum of ( 1 ) is consistent with the X-ray results. Interpretation of the 1 H and 13 C NMR spectra in DMSO- d 6 has been based on 2D experiments. The calculated GIAO/B3LYP/6-311++G(d,p) magnetic shielding constants have been used to predict 1 H and 13 C chemical shifts for the optimized structures of ( 2 ) and ( 3 ). [ABSTRACT FROM AUTHOR]

Abstract: A complex between a new N-phenylamide of monensin A (M-AM1) and sodium chloride has been synthesised and studied by X-ray diffraction and FT-IR spectroscopy. The crystal structure of the complex between M-AM1 and sodium chloride with acetonitrile was examined using X-ray diffraction and discussed in detail. Its structure is stabilised by coordination of the Na+ cation with oxygen atoms. The Na–O bond lengths are between 2.382(2) and 2.562(2)Å. The chloride anion is involved in a weak intermolecular hydrogen bond between different species forming a supramolecule. The ESI-MS spectra indicate that the amide forms stable complexes of exclusively 1:1 stoichiometry with Na+ cations. The FT-IR spectrum of the crystal is consistent with the results obtained by the X-ray study and provides spectroscopic evidence for the complex formation. Due to its specific structural properties N-phenylamide of monensin A efficiently binds sodium chloride. The result of the PM5 semiempirical calculation is in agreement with the spectroscopic data and allows visualisation of the structure of the M-AM1–Na+ complex. The new amide of monensin A has been additionally tested in view of its antimicrobial properties. It shows great activity towards some strains of Gram-positive bacteria (MIC=6.25–12.5μg/ml). [Copyright &y& Elsevier]

• 5-(Quinolinium)-valeric acid bromide hydrates form centrosymmetric and asymmetric dimers. • Water is a bridge between 5-(quinolinium)-valeric acid cations and bromide anions. • The DFT calculations were used to optimize isolated structures of monomer and dimer. • PED are used to assign the bands in the vibrational spectrum. • The NBO, MEP and QTAIM methods were used to characterize the optimized structures. The molecular structure and properties of 5-(quinolinium)-valeric acid bromide monohydrate are characterized by X-ray diffraction, B3LYP/6–311++G(d,p) calculations, FTIR and NMR spectra. Two molecules of this compound are hydrogen bonded through two water molecules and two bromide anions into centrosymmetric dimers, which are arranged in a strongly anisotropic layered structure. The structures of monomer and dimer of the title complex are optimized at the B3LYP/6–311++G(d,p) level of theory. The conformations of the valeric acid unit in the crystalline monohydrate and in isolated molecules (monohydrates and anhydrous forms) are compared. The experimental and theoretical infrared spectra are discussed. The FTIR spectrum shows an absorption in the 3500–2700 cm−1 region attributed to the νCOOH···OH 2 and νBr−···H 2 O. The potential energy distributions (PED) are used to assign bands in the IR spectrum of the monomer. The 1H and 13C NMR chemical shifts are assigned by two-dimensional techniques, COSY, HSQC and HMBC. Charge delocalization is analyzed using the natural bond orbital (NBO) method and it is shown in molecular electrostatic potential (MEP) maps. The bent conformations of the computed structures are characterized by the QTAIM method. Image, graphical abstract [ABSTRACT FROM AUTHOR]

N- Methylpyrrolidine betaine (N- carboxymethyl- N- methyl-pyrrolidinium, inner salt, MPRB) cocrystallizes with p -hydroxybenzoic acid (HBA) at the 1:1 ratio. The complex is characterized by single-crystal X-ray diffraction, FTIR and NMR spectra. The pyrrolidinium ring adopts an envelope conformation with the methyl group in axial and the carboxymethyl substituent in the equatorial positions. In the cocrystal the COO⋯HO and COO⋯HOOC hydrogen bonds are of 2.574 (4) and 2.586 (4) Å, respectively. The molecular geometry, Hirshfeld surface, natural bond orbitals (NBO), molecular electrostatic potential (MEP), vibrational wavenumbers, magnetic isotropic shielding constants were performed using the density functional theory (DFT/B3LYP) with 6–311++G (d,p) basis set. The molecular structures of isolated 1:1 and 1:2 complexes were optimized. The potential energy distribution (PED) of the IR vibrational modes were used to assign the bands in the IR spectrum. Diagrams of the HOMO and LUMO of components and complex are presented. Theoretical and experimental results are in a good agreement. Image 1 • The 1:1 complex of N-methylpyrrolidine betaine with p -hydroxybenzoic acid was prepared. • Structure of complexes were characterized by X-ray diffraction, FTIR and NMR spectra. • The structures of 1:1 and 1:2 complexes were optimized by the B3LYP/6-311++G(d,p) approach. • The molecules are linked through the OH∙∙∙OOC and COOH∙∙∙OOC hydrogen-bonds. • The IR and NMR experimental and computed spectra were discussed. [ABSTRACT FROM AUTHOR]