25 results on '"de Gonzalo-Calvo, David"'
Search Results
2. Navigating the path of reproducibility in microRNA-based biomarker research with ring trials.
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Sopić, Miron, Devaux, Yvan, and de Gonzalo-Calvo, David
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BIOMARKERS ,MICRORNA ,CLINICAL medicine ,DATA analysis ,TREATMENT effectiveness - Abstract
The development of microRNA (miRNA)-based biomarkers has gained significant attention due to their potential diagnostic, prognostic and therapeutic applications. However, the reproducibility of miRNA biomarker research faces unique challenges, primarily due to the influence of pre-analytical and analytical factors. The absence of standardized procedures contributes to inconsistencies across studies, alongside challenges in reference gene selection, data analysis methods and miRNA profiling platforms. Inter-laboratory comparison trials, or ring trials, offer a strategic approach to address technical and biological variability in miRNA biomarker studies. These trials promote standardization, identify sources of variability and strengthen the correlation between miRNAs and clinical outcomes. Despite their underutilization in miRNA biomarker research, ring trials represent a valuable tool for enhancing reproducibility and expediting the translation of miRNA-based biomarkers into clinical applications. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Development of circulating microRNA-based biomarkers for medical decision-making : a friendly reminder of what should NOT be done
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Lakkisto, Päivi, Dalgaard, Louise Torp, Belmonte, Thalia, Pinto-Sietsma, Sara-Joan, Devaux, Yvan, De Gonzalo-Calvo, David, HUSLAB, Department of Clinical Chemistry and Hematology, University of Helsinki, and Helsinki University Hospital Area
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microRNA ,Methodology ,Biomarker ,3111 Biomedicine ,Limitation ,Pitfall - Abstract
Circulating cell-free microRNAs (miRNAs) represent a major reservoir for biomarker discovery. Unfortunately, their implementation in clinical practice is limited due to a profound lack of reproducibility. The great technical variability linked to major pre-analytical and analytical caveats makes the interpretation of circulating cell-free miRNA data challenging and leads to inconsistent findings. Additional efforts directed to standardization are fundamental. Several well-established protocols are currently used by independent groups worldwide. Nonetheless, there are some specific aspects in specimen collection and processing, sample handling, miRNA quantification, and data analysis that should be considered to ensure reproducibility of results. Here, we have addressed this challenge using an alternative approach. We have highlighted and discussed common pitfalls that negatively impact the robustness of circulating miRNA quantification and their application for clinical decision-making. Furthermore, we provide a checklist usable by investigators to facilitate and ensure the control of the whole miRNA quantification and analytical process. We expect that these recommendations improve the reproducibility of findings, and ultimately, facilitate the incorporation of circulating miRNA profiles into clinical practice as the next generation of disease biomarkers.
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- 2023
4. A blood microRNA classifier for the prediction of ICU mortality in COVID-19 patients: a multicenter validation study.
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de Gonzalo-Calvo, David, Molinero, Marta, Benítez, Iván D., Perez-Pons, Manel, García-Mateo, Nadia, Ortega, Alicia, Postigo, Tamara, García-Hidalgo, María C., Belmonte, Thalia, Rodríguez-Muñoz, Carlos, González, Jessica, Torres, Gerard, Gort-Paniello, Clara, Moncusí-Moix, Anna, Estella, Ángel, Tamayo Lomas, Luis, Martínez de la Gándara, Amalia, Socias, Lorenzo, Peñasco, Yhivian, and de la Torre, Maria Del Carmen
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COVID-19 , *GENE expression , *SARS disease , *MICRORNA , *CRITICALLY ill - Abstract
Background: The identification of critically ill COVID-19 patients at risk of fatal outcomes remains a challenge. Here, we first validated candidate microRNAs (miRNAs) as biomarkers for clinical decision-making in critically ill patients. Second, we constructed a blood miRNA classifier for the early prediction of adverse outcomes in the ICU. Methods: This was a multicenter, observational and retrospective/prospective study including 503 critically ill patients admitted to the ICU from 19 hospitals. qPCR assays were performed in plasma samples collected within the first 48 h upon admission. A 16-miRNA panel was designed based on recently published data from our group. Results: Nine miRNAs were validated as biomarkers of all-cause in-ICU mortality in the independent cohort of critically ill patients (FDR < 0.05). Cox regression analysis revealed that low expression levels of eight miRNAs were associated with a higher risk of death (HR from 1.56 to 2.61). LASSO regression for variable selection was used to construct a miRNA classifier. A 4-blood miRNA signature composed of miR-16-5p, miR-192-5p, miR-323a-3p and miR-451a predicts the risk of all-cause in-ICU mortality (HR 2.5). Kaplan‒Meier analysis confirmed these findings. The miRNA signature provides a significant increase in the prognostic capacity of conventional scores, APACHE-II (C-index 0.71, DeLong test p-value 0.055) and SOFA (C-index 0.67, DeLong test p-value 0.001), and a risk model based on clinical predictors (C-index 0.74, DeLong test-p-value 0.035). For 28-day and 90-day mortality, the classifier also improved the prognostic value of APACHE-II, SOFA and the clinical model. The association between the classifier and mortality persisted even after multivariable adjustment. The functional analysis reported biological pathways involved in SARS-CoV infection and inflammatory, fibrotic and transcriptional pathways. Conclusions: A blood miRNA classifier improves the early prediction of fatal outcomes in critically ill COVID-19 patients. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Study protocol for the epigenetic characterization of angor pectoris according to the affected coronary compartment: Global and comprehensive assessment of the relationship between invasive coronary physiology and microRNAs.
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Matute-Blanco, Lucía, Fernández-Rodríguez, Diego, Casanova-Sandoval, Juan, Belmonte, Thalía, Benítez, Iván D., Rivera, Kristian, Garcia-Guimaraes, Marcos, Cortés Villar, Carlos, Peral Disdier, Vicente, Millán Segovia, Raúl, Barriuso, Ignacio, de Gonzalo-Calvo, David, Barbé, Ferran, and Worner, Fernando
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NON-coding RNA ,MYOCARDIAL ischemia ,EPIGENETICS ,GENE expression ,MICRORNA ,COLLATERAL circulation - Abstract
Background: MicroRNAs (miRNAs) are noncoding RNAs involved in post-transcriptional genetic regulation with a proposed role in intercellular communication. miRNAs are considered promising biomarkers in ischemic heart disease. Invasive physiological evaluation allows a precise assessment of each affected coronary compartment. Although some studies have associated the expression of circulating miRNAs with invasive physiological indexes, their global relationship with coronary compartments has not been assessed. Here, we will evaluate circulating miRNAs profiles according to the coronary pattern of the vascular compartment affectation. Study and design: This is an investigator-initiated, multicentre, descriptive study to be conducted at three centres in Spain (NCT05374694). The study will include one hundred consecutive patients older than 18 years with chest pain of presumed coronary cause undergoing invasive physiological evaluation, including fractional flow reserve (FFR) and index of microvascular resistance (IMR). Patients will be initially classified into four groups, according to FFR and IMR: macrovascular and microvascular affectation (FFR≤0.80 / IMR≥25), isolated macrovascular affectation (FFR≤0.80 / IMR<25), isolated microvascular affectation (FFR>0.80 / IMR ≥25) and normal coronary indexes (FFR>0.80 / IMR<25). Patients with isolated microvascular affectation or normal indexes will also undergo the acetylcholine test and may be reclassified as a fifth group in the presence of spasm. A panel of miRNAs previously associated with molecular mechanisms linked to chronic coronary syndrome will be analysed using RT-qPCR. Conclusions: The results of this study will identify miRNA profiles associated with patterns of coronary affectation and will contribute to a better understanding of the mechanistic pathways of coronary pathology. [ABSTRACT FROM AUTHOR]
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- 2023
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6. Identification of circulating microRNA profiles associated with pulmonary function and radiologic features in survivors of SARS-CoV-2-induced ARDS
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García-Hidalgo, María C., González, Jessica, Benítez, Iván D., Carmona, Paola, Santisteve, Sally, Pérez-Pons, Manel, Moncusí-Moix, Anna, Gort-Paniello, Clara, Rodríguez-Jara, Fátima, Molinero, Marta, Belmonte, Thalia, Torres, Gerard, Labarca, Gonzalo, Nova-Lamperti, Estefania, Caballero, Jesús, Bermejo-Martin, Jesús F., Ceccato, Adrián, Fernández-Barat, Laia, Ferrer, Ricard, Garcia-Gasulla, Dario, Menéndez, Rosario, Motos, Ana, Peñuelas, Oscar, Riera, Jordi, Torres, Antoni, Barbé, Ferran, de Gonzalo-Calvo, David, and Barcelona Supercomputing Center
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Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC] ,Respiratory Distress Syndrome ,Acute respiratory distress syndrome ,SARS-CoV-2 ,Epidemiology ,Immunology ,Total severity score ,COVID-19 ,MicroRNA ,General Medicine ,Microbiology ,COVID-19 (Malaltia) ,Lung function ,Sequelae ,Infectious Diseases ,COVID-19 (Disease) ,Statistical analysis ,Virology ,Drug Discovery ,Humans ,Parasitology ,Circulating MicroRNA ,Survivors ,Lung - Abstract
There is a limited understanding of the pathophysiology of postacute pulmonary sequelae in severe COVID-19. The aim of current study was to define the circulating microRNA (miRNA) profiles associated with pulmonary function and radiologic features in survivors of SARS-CoV-2-induced ARDS. The study included patients who developed ARDS secondary to SARS-CoV-2 infection (n=167) and a group of infected patients who did not develop ARDS (n=33). Patients were evaluated 3 months after hospital discharge. The follow-up included a complete pulmonary evaluation and chest computed tomography. Plasma miRNA profiling was performed using RT-qPCR. Random forest was used to construct miRNA signatures associated with lung diffusing capacity for carbon monoxide (DLCO) and total severity score (TSS). Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses were conducted. DLCO
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- 2022
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7. Endogenous controls and microRNA profile in female patients with obstructive sleep apnea.
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Zapater, Andrea, Benítez, Iván D., Santamaria-Martos, Fernando, Pinilla, Lucía, Targa, Adriano, De Gonzalo-Calvo, David, Torres, Gerard, Mínguez, Olga, Cortijo, Anunciación, Dalmases, Mireia, Barbé, Ferrán, and Sánchez-de-la-Torre, Manuel
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SLEEP apnea syndromes ,WOMEN patients ,MICRORNA - Abstract
Recent studies have evaluated the potential of circulating microRNAs (miRNAs) as valuable biomarkers for characterizing obstructive sleep apnea (OSA) in males. The potential use of miRNAs as clinical indicators in females is unknown. The objective is to identify a set of miRNAs to be used as endogenous controls (ECs) in female patients with OSA. Then, to analyze differences in the miRNA expression profile between patients with and without OSA. This observational, longitudinal study included 85 females with suspected OSA who underwent a polysomnography. OSA was defined as an apnea hypopnea index ≥ 15 events/h. The study population was stratified into 50 OSA patients and 38 non-OSA patients. Exploratory expression profiling of 188 miRNAs consistent and reliable in plasma was performed in a discovery cohort of 21 patients by TaqMan-Low-Density-Array (TLDA). The best ECs were identified by mean centre + standard deviation normalization and concordance correlation restricted normalization. Differentially expressed candidate miRNAs were selected for RT-qPCR validation in a validation cohort of 64 patients. Three circulating miRNAs (miR-30a-5p, miR-93-3p and miR-532-5p) were identified as most stable for use as ECs. Twenty-seven miRNA candidates were identified as potential biomarkers for OSA screening (p value < 0.025) in the TLDA cohort. However, validation cohort showed no differences in the circulating miRNA profile in female patients with and without OSA. We identified a set of ECs in females with OSA that may contribute to result homogeneity in determining circulating miRNAs. Exploratory analysis did not identify a significantly miRNA profile between female patients with and without OSA. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Reduced Levels of miR-342-5p in Plasma Are Associated With Worse Cognitive Evolution in Patients With Mild Alzheimer's Disease.
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Dakterzada, Farida, David Benítez, Iván, Targa, Adriano, Lladó, Albert, Torres, Gerard, Romero, Leila, de Gonzalo-Calvo, David, Moncusí-Moix, Anna, Tort-Merino, Adria, Huerto, Raquel, Sánchez-de-la-Torre, Manuel, Barbé, Ferran, and Piñol-Ripoll, Gerard
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ALZHEIMER'S patients ,MICRORNA ,COGNITION disorders ,ALZHEIMER'S disease - Abstract
Background: Progressive cognitive decline is the most relevant clinical symptom of Alzheimer's disease (AD). However, the rate of cognitive decline is highly variable between patients. Synaptic deficits are the neuropathological event most correlated with cognitive impairment in AD. Considering the important role of microRNAs (miRNAs) in regulating synaptic plasticity, our objective was to identify the plasma miRNAs associated with the rate of cognitive decline in patients with mild AD. Methods: We analyzed 754 plasma miRNAs from 19 women diagnosed with mild AD using TaqMan low-density array cards. The patients were grouped based on the rate of decline in the MMSE score after 2 years [<4 points (N = 11) and ≥4 points (N = 8)]. The differentially expressed miRNAs between the two groups were validated in an independent cohort of men and women (N = 53) with mild AD using RT-qPCR. Results: In the discovery cohort, 17 miRNAs were differentially expressed according to the fold change between patients with faster declines in cognition and those with slower declines. miR-342-5p demonstrated differential expression between the groups and a good correlation with the rate of cognitive decline in the validation cohort (r = −0.28; p = 0.026). This miRNA had a lower expression level in patients who suffered from more severe decline than in those who were cognitively more stable after 2 years (p = 0.049). Conclusion: Lower levels of miR-342-5p in plasma were associated with faster cognitive decline in patients with mild AD after 2 years of follow-up. [ABSTRACT FROM AUTHOR]
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- 2021
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9. Peripheral blood microRNAs and the COVID-19 patient: methodological considerations, technical challenges and practice points.
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Pinilla, Lucía, Benitez, Ivan D., González, Jessica, Torres, Gerard, Barbé, Ferran, and de Gonzalo-Calvo, David
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MICRORNA ,COVID-19 testing ,ADULT respiratory distress syndrome ,MEDICAL decision making ,CLINICAL trials - Abstract
The COVID-19 emergency pandemic resulting from infection with SARS-CoV-2 represents a major threat to public health worldwide. There is an urgent clinical demand for easily accessible tools to address weaknesses and gaps in the management of COVID-19 patients. In this context, transcriptomic profiling of liquid biopsies, especially microRNAs (miRNAs), has recently emerged as a robust source of potential clinical indicators for medical decision-making. Nevertheless, the analysis of the circulating miRNA signature and its translation to clinical practice requires strict control of a wide array of methodological details. In this review, we indicate the main methodological aspects that should be addressed when evaluating the circulating miRNA profiles in COVID-19 patients, from preanalytical and analytical variables to the experimental design, impact of confounding, analysis of the data and interpretation of the findings, among others. Additionally, we provide practice points to ensure the rigour and reproducibility of miRNA-based biomarker investigations of this condition. Abbreviations: ACE: angiotensin-converting enzyme; ARDS: acute respiratory distress syndrome; COVID-19: coronavirus disease 2019; ERDN: early Detection Research Network; LMWH: low molecular weight heparin; miRNA: microRNA; ncRNA: noncoding RNA; SARS-CoV-2: severe acute respiratory syndrome coronavirus-2; SOP: standard operating procedure. [ABSTRACT FROM AUTHOR]
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- 2021
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10. Exercise dose affects the circulating microRNA profile in response to acute endurance exercise in male amateur runners.
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Fernández‐Sanjurjo, Manuel, Úbeda, Natalia, Fernández‐García, Benjamín, del Valle, Miguel, Ramírez de Molina, Ana, Crespo, María Carmen, Martín‐Hernández, Roberto, Casas‐Agustench, Patricia, Martínez‐Camblor, Pablo, de Gonzalo‐Calvo, David, Díez‐Robles, Sergio, García‐González, Ángela, Montero, Ana, González‐González, Felipe, Rabadán, Manuel, Díaz‐Martínez, Ángel Enrique, Whitham, Martin, Iglesias‐Gutiérrez, Eduardo, and Dávalos, Alberto
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BIOMARKERS ,CELL cycle ,CELL communication ,CELLULAR signal transduction ,ENDURANCE sports training ,ENERGY metabolism ,GENE expression ,POLYMERASE chain reaction ,RUNNING ,AMATEUR athletes ,PRE-tests & post-tests ,LONG-distance running ,REVERSE transcriptase polymerase chain reaction ,EXERCISE intensity ,RNA probes ,MICRORNA - Abstract
The systemic response to exercise is dose‐dependent and involves a complex gene expression regulation and cross‐talk between tissues. This context ARISES the need for analyzing the influence of exercise dose on the profile of circulating microRNAs (c‐miRNAs), as emerging posttranscriptional regulators and intercellular communicators. Thus, we hypothesized that different exercise doses will determine specific c‐miRNA signatures that will highlight its potential as exercise dose biomarker. Nine active middle‐aged males completed a 10‐km race (10K), a half‐marathon (HM), and a marathon (M). Blood samples were collected immediately before and after races. Plasma RNA was extracted, and a global screening of 752 microRNAs was analyzed using RT‐qPCR. Three different c‐miRNA profiles were defined according to the three doses. In 10K, 14 c‐miRNAs were found to be differentially expressed between pre‐ and post‐exercise, 13 upregulated and 1 downregulated. Regarding HM, 13 c‐miRNAs were found to be differentially modulated, in all the cases upregulated. A total of 28 c‐miRNAs were found to be differentially expressed in M, 21 overexpressed and 7 repressed after this race. We had also found 3 common c‐miRNAs between 10K and M and 2 common c‐miRNAs between 10K and HM. In silico analysis supported a close association between exercise dose c‐miRNA profiles and cellular pathways linked to energy metabolism and cell cycle. In conclusion, we have observed that different exercise doses induced specific c‐miRNA profiles. So, our results point to c‐miRNAs as emerging exercise dose biomarkers and as one of regulatory mechanisms modulating the response to endurance exercise. [ABSTRACT FROM AUTHOR]
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- 2020
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11. Circulating microRNAs in suspected stable coronary artery disease: A coronary computed tomography angiography study.
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Gonzalo‐Calvo, David, Vilades, David, Martínez‐Camblor, Pablo, Vea, Àngela, Nasarre, Laura, Sanchez Vega, Jesus, Leta, Rubén, Carreras, Francesc, Llorente‐Cortés, Vicenta, de Gonzalo-Calvo, David, Martínez-Camblor, Pablo, and Llorente-Cortés, Vicenta
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Objectives: To explore the diagnostic performance of circulating microRNAs (miRNAs) as biomarkers in patients with suspected stable coronary artery disease (CAD).Methods: Plasma samples were collected from 237 consecutive patients referred for coronary computed tomography angiography (CCTA). Presence, extension and severity of coronary stenosis were evaluated using the indexes: presence of diameter stenosis ≥ 50%, segment involvement score (SIS), segment stenosis score (SSS) and 3-vessel plaque score. A panel of 10 miRNAs previously associated with CAD was analysed using RT-qPCR. Multivariate analyses were used to analyse the associations between biomarkers and indexes. Discrimination was evaluated using the area under the ROC curve (AUC). Decision trees were generated using chi-squared Automatic Interaction Detector (CHAID) prediction models.Results: After comprehensive adjustment including cardiovascular risk factors, medication use, confounding factors and protein-based biomarkers (hs-TnT and hs-CRP), several circulating miRNAs were inversely associated with coronary atherosclerosis extension (SIS and 3-vessel plaque score) and severity (SSS). In the whole population, circulating miRNAs showed a poor discrimination value for all indexes (AUC = 0.539-0.644) and did not increase the discrimination capacity of a clinical model of coronary stenosis presence, extension and severity based on conventional cardiovascular risk factors. Conversely, the inclusion of circulating miRNAs in decision trees produces models that improve the classification of cases and controls in specific patient subgroups.Conclusions: This study identifies a group of circulating miRNAs that failed to improve the discrimination capacity of cardiovascular risk factors but that has the potential to define specific subpopulations of patients with suspected stable CAD. [ABSTRACT FROM AUTHOR]- Published
- 2019
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12. Circulating microRNAs as emerging cardiac biomarkers responsive to acute exercise.
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de Gonzalo-Calvo, David, Llorente-Cortés, Vicenta, Heras, Maria Eugenia, Boraita Pérez, Araceli, Díaz-Martínez, Ángel E., Fernández-Sanjurjo, Manuel, Tomás-Zapico, Cristina, Iglesias-Gutiérrez, Eduardo, Dávalos, Alberto, Amado-Rodríguez, Laura, Díaz-Coto, Susana, Montero, Ana, García-González, Ángela, and Úbeda, Natalia
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MICRORNA , *BIOLOGICAL tags , *EXERCISE , *HEART diseases , *BONFERRONI correction - Abstract
Background Circulating microRNAs (c-miRNAs) are mediators of intercellular communication with great potential as cardiac biomarkers. The analysis of c-miRNAs in response to physiological stress, such as exercise, would provide valuable information for clinical practice and a deeper understanding of the molecular response to physical activity. Here, we analysed for the first time the acute exercise response of c-miRNAs reported as biomarkers of cardiac disease in a well-characterized cohort of healthy active adults. Methods Blood samples were collected immediately before and after (0 h, 24 h, 72 h) a 10-km race, a half-marathon (HM) and a marathon (M). Serum RNA from 10-km and M samples was extracted and a panel of 74 miRNAs analysed using RT-qPCR. c-miRNA response was compared with a panel of nine cardiac biomarkers. Functional enrichment analysis was performed. Pre- and post-M echocardiographic analyses were carried out. Results Serum levels of all cardiac biomarkers were upregulated in a dose-dependent manner in response to exercise, even in the absence of symptoms or signs of cardiac injury. A deregulation in the profiles of 5 and 19 c-miRNAs was observed for 10-km and M, respectively. Each race induced a specific qualitative and quantitative alteration of c-miRNAs implicated in cardiac adaptions. Supporting their discriminative potential, a number of c-miRNAs previously associated with cardiac disease were undetectable or stable in response to exercise. Conversely, “pseudo-disease” signatures were also observed. Conclusions c-miRNAs may be useful for the management of cardiac conditions in the context of acute aerobic exercise. Translational aspects of the work Circulating microRNAs could offer incremental diagnostic value to established and emerging cardiac biomarkers, such as hs-cTnT or NT-proBNP, in those patients with cardiac dysfunction symptoms after an acute bout of endurance exercise. Furthermore, circulating miRNAs could also show “pseudo-disease” signatures in response to acute exercise. Clinical practitioners should be aware of the impact caused by exercise in the interpretation of miRNA data. [ABSTRACT FROM AUTHOR]
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- 2018
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13. Plasma microRNAs as biomarkers for Lamin A/C-related dilated cardiomyopathy.
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Toro, Rocío, Blasco-Turrión, Sara, Morales-Ponce, Francisco José, Gonzalez, Pablo, Martínez-Camblor, Pablo, López-Granados, Amador, Brugada, Ramon, Campuzano, Oscar, Pérez-Serra, Alexandra, Rosa Longobardo, Felix, Mangas, Alipio, Llorente-Cortes, Vicenta, and de Gonzalo-Calvo, David
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MICRORNA ,BIOMARKERS ,LAMINS ,DILATED cardiomyopathy ,SUDDEN death - Abstract
Abstract: Lamin A/C gene (LMNA)-related familial dilated cardiomyopathy (fDCM) is an aggressive heart disease that often leads to transplantation and sudden death. The aim of our study was to evaluate the circulating microRNA (miRNA) profiles of patients with LMNA pathogenic mutations. The study population (N = 75) included (i) patients with pathogenic LMNA mutations responsible for fDCM (LMNA
MUT ), (ii) age- and sex-matched LMNA wild-type controls (LMNAWT control), and (iii) LMNA wild-type idiopathic DCM (iDCM) patients (LMNAWT iDCM). Detailed clinical information was obtained from each participant. A panel of 179 plasma miRNAs was evaluated using RT-qPCR. An initial screening study was performed in LMNAMUT carriers and age-matched LMNAWT controls (N = 16). Forty-four miRNAs were specifically deregulated in LMNAMUT carriers. Ten miRNA candidates were selected for subsequent validation after coexpression analyses and filtered for expression levels and statistical significance. Among the candidates, let-7a-5p, miR-142-3p, miR-145-5p and miR-454-3p levels were significantly increased in LMNAMUT carriers compared to LMNAWT controls and iDCM patients (P < 0.050). These circulating miRNAs, and their combination, were also associated with the presence of pathogenic mutations in regression and ROC analyses. This signature also discriminates between LMNAWT healthy subjects and LMNAMUT carriers who are phenotypically negative for DCM and between LMNAWT iDCM and LMNA-related DCM patients. Correlation and functional enrichment analyses supported their association with the pathophysiology of the disease. We demonstrated for the first time that a specific miRNA signature could serve as a novel non-invasive tool to assist in the diagnosis of patients with fDCM caused by LMNA pathogenic mutations.Key messages: Let-7a-5p, miR-142-3p, miR-145-5p and miR-454-3p are differentially expressed in LMNAMUT carriers.A composite score based on these miRNAs is a biomarker of mutations in the LMNA gene.This miRNA signature can be associated with the pathophysiology of familial DCM.The circulating miRNA profile can assist in the diagnosis of familial DCM. [ABSTRACT FROM AUTHOR]- Published
- 2018
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14. Epigenetic Biomarkers and Cardiovascular Disease: Circulating MicroRNAs.
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de Gonzalo-Calvo, David, Iglesias-Gutiérrez, Eduardo, and Llorente-Cortés, Vicenta
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Copyright of Revista Española de Cardiología (18855857) is the property of Elsevier B.V. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2017
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15. Translating the microRNA signature of microvesicles derived from human coronary artery smooth muscle cells in patients with familial hypercholesterolemia and coronary artery disease.
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de Gonzalo-Calvo, David, Cenarro, Ana, Garlaschelli, Katia, Pellegatta, Fabio, Vilades, David, Nasarre, Laura, Camino-Lopez, Sandra, Crespo, Javier, Carreras, Francesc, Leta, Rubén, Catapano, Alberico Luigi, Norata, Giuseppe Danilo, Civeira, Fernando, and Llorente-Cortes, Vicenta
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MICRORNA , *LIPOPROTEINS , *CORONARY disease , *HYPERCHOLESTEREMIA , *REVERSE transcriptase polymerase chain reaction , *PATIENTS - Abstract
Aims: To analyze the impact of atherogenic lipoproteins on the miRNA signature of microvesicles derived from human coronary artery smooth muscle cells (CASMC) and to translate these results to familial hypercholesterolemia (FH) and coronary artery disease (CAD) patients. Methods: Conditioned media was collected after exposure of CASMC to atherogenic lipoproteins. Plasma samples were collected from two independent populations of diagnosed FH patients and matched normocholesterolemic controls (Study population 1, N = 50; Study population 2, N = 24) and a population of patients with suspected CAD (Study population 3, N = 50). Extracellular vesicles were isolated and characterized using standard techniques. A panel of 30 miRNAs related to vascular smooth muscle cell (VSMC) (patho-)physiology was analyzed using RT-qPCR. Results: Atherogenic lipoproteins significantly reduced levels of miR-15b-5p, − 24-3p, − 29b-3p, − 130a-3p, − 143-3p, − 146a-3p, − 222-3p, − 663a levels ( P < 0.050) in microvesicles (0.1 μm–1 μm in diameter) released by CASMC. Two of these miRNAs, miR-24-3p and miR-130a-3p, were reduced in circulating microvesicles from FH patients compared with normocholesterolemic controls in a pilot study (Study population 1) and in different validation studies (Study populations 1 and 2) ( P < 0.050). Supporting these results, plasma levels of miR-24-3p and miR-130a-3p were also downregulated in FH patients compared to controls ( P < 0.050). In addition, plasma levels of miR-130a-3p were inversely associated with coronary atherosclerosis in a cohort of suspected CAD patients (Study population 3) ( P < 0.050). Conclusions: Exposure to atherogenic lipoproteins modifies the miRNA profile of CASMC-derived microvesicles and these alterations are reflected in patients with FH. Circulating miR-130a-3p emerges as a potential biomarker for coronary atherosclerosis. [ABSTRACT FROM AUTHOR]
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- 2017
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16. Circulating inflammatory miRNA signature in response to different doses of aerobic exercise.
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de Gonzalo-Calvo, David, Dávalos, Alberto, Montero, Ana, García-González, Ángela, Tyshkovska, Iryna, González-Medina, Antonio, Soares, Sara M. A., Martínez-Camblor, Pablo, Casas-Agustench, Patricia, Rabadán, Manuel, Díaz-Martínez, Ángel E., Úbeda, Natalia, and Iglesias-Gutiérrez, Eduardo
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MICRORNA ,PHYSIOLOGICAL aspects of aerobic exercises ,INFLAMMATION ,MIDDLE-aged men ,MARATHON running - Abstract
While moderate acute exercise has been associated with strong anti-inflammatory mechanisms, strenuous exercise has been linked to deleterious inflammatory perturbations. It is therefore fundamental to elucidate the mechanisms that regulate the exercise-induced inflammatory cascade. Information on novel regulators such as circulating inflammatory microRNAs (c-inflammamiRs) is incomplete. In this study, we evaluated the response of a panel of c-inflammamiRs to different doses of acute aerobic exercise. We first studied the exercise-induced inflammatory cascade in serum samples of nine active middle-aged males immediately before and after (0 h, 24 h, 72 h) 10-km, half-marathon, and marathon races. Next, we analyzed the circulating profile of 106 specific c-inflammamiRs immediately before) and after (0 h, 24 h) 10-km (low inflammatory response) and marathon (high inflammatory response) races. Analysis of classical inflammatory parameters revealed a dose-dependent effect of aerobic exercise on systemic inflammation, with higher levels detected after marathon. We observed an increase in miR-150-5p immediately after the 10-km race. Levels of 12 c-inflammamiRs were increased immediately after the marathon (let-7d-3p, let-7f-2-3p, miR-125b-5p, miR-132-3p, miR-143-3p, miR-148a-3p, miR-223-3p, miR-223-5p, miR-29a-3p, miR-34a-5p, miR-424-3p, and miR-424-5p). c-inflammamiRs returned to basal levels after 24 h. Correlation and in silico analyses supported a close association between the observed c-inflammamiR pattern and regulation of the inflammatory process. In conclusion, we found that different doses of acute aerobic exercise induced a distinct and specific c-inflammamiR response, which may be associated with control of the exercise-induced inflammatory cascade. Our findings point to c-inflammamiRs as potential biomarkers of exercise-induced inflammation, and hence, exercise dose. [ABSTRACT FROM AUTHOR]
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- 2015
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17. Circulating Long Noncoding RNAs in Personalized Medicine: Response to Pioglitazone Therapy in Type 2 Diabetes.
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de Gonzalo-Calvo, David, Kenneweg, Franziska, Bang, Claudia, Toro, Rocío, van der Meer, Rutger W., Rijzewijk, Luuk J., Smit, Johannes W.A., Lamb, Hildo J., Llorente-Cortes, Vicenta, and Thum, Thomas
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NON-coding RNA , *INDIVIDUALIZED medicine , *PIOGLITAZONE , *TYPE 2 diabetes treatment , *MICRORNA - Published
- 2016
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18. Association of Circulating microRNAs with Coronary Artery Disease and Usefulness for Reclassification of Healthy Individuals: The REGICOR Study.
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Dégano, Irene R., Camps-Vilaró, Anna, Subirana, Isaac, García-Mateo, Nadia, Cidad, Pilar, Muñoz-Aguayo, Dani, Puigdecanet, Eulàlia, Nonell, Lara, Vila, Joan, Crepaldi, Felipe M., de Gonzalo-Calvo, David, Llorente-Cortés, Vicenta, Pérez-García, María Teresa, Elosua, Roberto, Fitó, Montserrat, and Marrugat, Jaume
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MICRORNA ,CORONARY disease ,LOW density lipoproteins ,VASCULAR smooth muscle ,MYOCARDIAL infarction - Abstract
Risk prediction tools cannot identify most individuals at high coronary artery disease (CAD) risk. Oxidized low-density lipoproteins (oxLDLs) and microRNAs are actively involved in atherosclerosis. Our aim was to examine the association of CAD and oxLDLs-induced microRNAs, and to assess the microRNAs predictive capacity of future CAD events. Human endothelial and vascular smooth muscle cells were treated with oxidized/native low-density lipoproteins, and microRNA expression was analyzed. Differentially expressed and CAD-related miRNAs were examined in serum samples from (1) a case-control study with 476 myocardial infarction (MI) patients and 487 controls, and (2) a case-cohort study with 105 incident CAD cases and 455 randomly-selected cohort participants. MicroRNA expression was analyzed with custom OpenArray plates, log rank tests and Cox regression models. Twenty-one microRNAs, two previously undescribed (hsa-miR-193b-5p and hsa-miR-1229-5p), were up- or down-regulated upon cell treatment with oxLDLs. One of the 21, hsa-miR-122-5p, was also upregulated in MI cases (fold change = 4.85). Of the 28 CAD-related microRNAs tested, 11 were upregulated in MI cases-1 previously undescribed (hsa-miR-16-5p)-, and 1/11 was also associated with CAD incidence (adjusted hazard ratio = 0.55 (0.35–0.88)) and improved CAD risk reclassification, hsa-miR-143-3p. We identified 2 novel microRNAs modulated by oxLDLs in endothelial cells, 1 novel microRNA upregulated in AMI cases compared to controls, and one circulating microRNA that improved CAD risk classification. [ABSTRACT FROM AUTHOR]
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- 2020
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19. Plasma microRNA Profiling Reveals Novel Biomarkers of Epicardial Adipose Tissue: A Multidetector Computed Tomography Study.
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de Gonzalo-Calvo, David, Vilades, David, Martínez-Camblor, Pablo, Vea, Àngela, Ferrero-Gregori, Andreu, Nasarre, Laura, Bornachea, Olga, Sanchez Vega, Jesus, Leta, Rubén, Puig, Núria, Benítez, Sonia, Sanchez-Quesada, Jose Luis, Carreras, Francesc, and Llorente-Cortés, Vicenta
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MULTIDETECTOR computed tomography , *ADIPOSE tissues , *MICRORNA , *BIOMARKERS , *BIOLOGICAL tags - Abstract
Epicardial adipose tissue (EAT) constitutes a novel parameter for cardiometabolic risk assessment and a target for therapy. Here, we evaluated for the first time the plasma microRNA (miRNA) profile as a source of biomarkers for epicardial fat volume (EFV). miRNAs were profiled in plasma samples from 180 patients whose EFV was quantified using multidetector computed tomography. In the screening study, 54 deregulated miRNAs were identified in patients with high EFV levels (highest tertile) compared with matched patients with low EFV levels (lowest tertile). After filtering, 12 miRNAs were selected for subsequent validation. In the validation study, miR-15b-3p, miR-22-3p, miR-148a-3p miR-148b-3p and miR-590-5p were directly associated with EFV, even after adjustment for confounding factors (p value < 0.05 for all models). The addition of miRNA combinations to a model based on clinical variables improved the discrimination (area under the receiver-operating-characteristic curve (AUC) from 0.721 to 0.787). miRNAs correctly reclassified a significant proportion of patients with an integrated discrimination improvement (IDI) index of 0.101 and a net reclassification improvement (NRI) index of 0.650. Decision tree models used miRNA combinations to improve their classification accuracy. These results were reproduced using two proposed clinical cutoffs for epicardial fat burden. Internal validation corroborated the robustness of the models. In conclusion, plasma miRNAs constitute novel biomarkers of epicardial fat burden. [ABSTRACT FROM AUTHOR]
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- 2019
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20. Diagnostic value of circulating miRNAs: Association with the presence and extension of coronary atherosclerosis in patients with suspected ischemic heart disease.
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De Gonzalo Calvo, David, Sanchez Vega, Jesus, Vilades, David, Nasarre, Laura, Leta, Ruben, Carreras, Francesc, and Cortes, Vicenta Llorente
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CORONARY disease , *MICRORNA , *ATHEROSCLEROSIS , *MEDICAL statistics , *CLINICAL trials , *PATIENTS - Published
- 2017
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21. Decoding viral and host microRNA signatures in airway-derived biosamples: Insights for biomarker discovery in viral respiratory infections.
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Molinero, Marta, Perez-Pons, Manel, González, Jessica, Barbé, Ferran, and de Gonzalo-Calvo, David
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VIRUS diseases , *RESPIRATORY infections , *COVID-19 pandemic , *MICRORNA , *NON-coding RNA - Abstract
The global public health crisis caused by the COVID-19 pandemic has intensified the global concern regarding viral respiratory tract infections. Despite their considerable impact on health, society and the economy, effective management of these conditions remains a significant challenge. Integrating high-throughput analyses is pivotal for early detection, prognostication of adverse outcomes, elucidating pathogenetic pathways and developing therapeutic approaches. In recent years, microRNAs (miRNAs), a subset of small noncoding RNAs (ncRNAs), have emerged as promising tools for molecular phenotyping. Current evidence suggests that miRNAs could serve as innovative biological markers, aiding in informed medical decision-making. The cost-effective quantification of miRNAs in standardized samples using techniques routinely employed in clinical laboratories has become feasible. In this context, samples obtained from the airways represent a valuable source of information due to their direct exposure to the infectious agent and host response within the respiratory tract. This review explores viral and host miRNA profiling in airway-derived biosamples as a source of molecular information to guide patient management, with a specific emphasis on SARS-CoV-2 infection. [Display omitted] • Airway samples provide insights into viral respiratory infections. • Host and viral miRNAs are informative of pathogenetic mechanisms. • Host and viral miRNAs serve as valuable tools for biomarker discovery. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Addressing the unsolved challenges in microRNA-based biomarker development: Suitable endogenous reference microRNAs for SARS-CoV-2 infection severity.
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Belmonte, Thalia, Perez-Pons, Manel, Benítez, Iván D., Molinero, Marta, García-Hidalgo, María C., Rodríguez-Muñoz, Carlos, Gort-Paniello, Clara, Moncusí-Moix, Anna, Madè, Alisia, Devaux, Yvan, Martelli, Fabio, Ortega, Alicia, González, Jessica, Torres, Gerard, Barbé, Ferran, and de Gonzalo-Calvo, David
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COVID-19 , *BIOMARKERS , *SARS-CoV-2 , *MICRORNA , *HOSPITAL admission & discharge - Abstract
Circulating cell-free microRNAs (miRNAs) are promising biomarkers for medical decision-making. Suitable endogenous controls are essential to ensure reproducibility. We aimed to identify and validate endogenous reference miRNAs for qPCR data normalization in samples from SARS-CoV-2-infected hospitalized patients. We used plasma samples (n = 170) from COVID-19 patients collected at hospital admission (COVID-Ponent project, www.clinicaltrials.gov/NCT04824677). First, 179 miRNAs were profiled using RT–qPCR. After stability assessment, candidates were validated using the same methodology. miRNA stability was analyzed using the geNorm, NormFinder and BestKeeper algorithms. Stability was further evaluated using an RNA-seq dataset derived from COVID-19 hospitalized patients, along with plasma samples from patients with critical COVID-19 profiled using RT-qPCR. In the screening phase, after strict control of expression levels, stability assessment selected eleven candidates (miR-17-5p, miR-20a-5p, miR-30e-5p, miR-106a-5p, miR-151a-5p, miR-185-5p, miR-191-5p, miR-423-3p, miR-425-5p, miR-484 and miR-625-5p). In the validation phase, all algorithms identified miR-106a-5p and miR-484 as top endogenous controls. No association was observed between these miRNAs and clinical or sociodemographic characteristics. Both miRNAs were stably detected and showed low variability in the additional analyses. In conclusion, a 2-miRNA panel composed of miR-106a-5p and miR-484 constitutes a first-line normalizer for miRNA-based biomarker development using qPCR in hospitalized patients infected with SARS-CoV-2. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Prognostic value of circulating microRNAs compared to high-sensitivity troponin T in patients presenting with suspected acute coronary syndrome to the emergency department.
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Biener, Moritz, Giannitsis, Evangelos, Thum, Thomas, Bär, Christian, Stoyanov, Kiril M, Salbach, Christian, de Gonzalo-Calvo, David, Frey, Norbert, and Mueller-Hennessen, Matthias
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ACUTE coronary syndrome , *HOSPITAL emergency services , *MYOCARDIAL infarction , *PROGNOSIS , *TROPONIN - Abstract
To evaluate the prognostic value of eleven microRNAs (miRNAs) compared to high-sensitivity Troponin T (hs-cTnT) in patients presenting with suspected acute coronary syndrome (ACS) to the emergency department (ED). 1,042 patients presenting between August 2014 and April 2017 were included. Expression levels of eleven microRNAs (miR-21-5p, miR-22-3p, miR-29a-3p, miR-92a-3p, miR-122-5p, miR-126-3p, miR-132-3p, miR-133a-3p, miR-134-5p, miR-191-3p, and miR-423-5p) were determined using RT-qPCR. All-cause mortality (ACM) and a composite of ACM, acute myocardial infarction (AMI) and stroke were defined as endpoints. During a median follow-up of 399 (P25-P75: 381–525) days 58 patients (5.6%) died. The composite endpoint occurred in 86 patients (8.3%). Different expression levels of miR-21-5p (median, P25-P75: 5.28 [5.14–5.51] vs. 5.16 [4.97–5.35], p = 0.0033) and miR-122-5p (median, P25-P75: 5.17 [4.81–5.49] vs. 5.35 [5.01–5.69], p = 0.0184) were observed in patients who died compared to survivors. ROC-optimized cutoff of miR-21-5p (HR, P25-P75: 3.3 [1.2–9.4], p = 0.0239), but not miR-122-5p (HR, P25-P75: 0.4 [0.2–0.8], p = 0.0116), was predictive for all-cause mortality, even after adjustment in a multivariate model. Nevertheless, addition of miR-21-5p and miR-122-5p decreased prognostic accuracy of hs-cTnT for all-cause mortality (△AUC: 0.112, p = 0.0159). Hs-cTnT admission values had a high prognostic value for ACM (AUC [95%CI] = 0.794 [0.751–0.837]) and the composite of ACM, AMI and stroke (AUC [95%CI] = 0.745 [0.695–0.794]). Despite a different expression depending on outcomes miR-21-5p and miR-122-5p do not add prognostic information to hs-cTnT in patients presenting with suspected ACS to the ED. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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24. Dietary microRNAs and cancer: A new therapeutic approach?
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Dávalos, Alberto, Pinilla, Lucía, López de las Hazas, María-Carmen, Pinto-Hernández, Paola, Barbé, Ferran, Iglesias-Gutiérrez, Eduardo, and de Gonzalo-Calvo, David
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MICRORNA , *DISEASE risk factors , *FOOD habits , *HUMAN physiology , *EARLY death - Abstract
Cancer is one of the leading causes of premature death and constitutes a challenge for both low- and high-income societies. Previous evidence supports a close association between modifiable risk factors, including dietary habits, and cancer risk. Investigation of molecular mechanisms that mediate the pro-oncogenic and anti-oncogenic effects of diet is therefore fundamental. MicroRNAs (miRNAs) have received much attention in the past few decades as crucial molecular elements of human physiology and disease. Aberrant expression patterns of these small noncoding transcripts have been observed in a wide array of cancers. Interestingly, human miRNAs not only can be modulated by bioactive dietary components, but it has also been proposed that diet-derived miRNAs may contribute to the pool of human miRNAs. Results from independent groups have suggested that these exogenous miRNAs may be functional in organisms. These findings open the door to novel and innovative approaches to cancer therapy. Here, we provide an overview of the biology of miRNAs, with a special focus on plant-derived dietary miRNAs, summarize recent findings in the field of cancer, address the possible applications to clinical practice and discuss obstacles and challenges in the field. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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25. Circulating lipoprotein-carried miRNome analysis reveals novel VLDL-enriched microRNAs that strongly correlate with the HDL-microRNA profile.
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Rossi-Herring, Guido, Belmonte, Thalia, Rivas-Urbina, Andrea, Benítez, Sonia, Rotllan, Noemi, Crespo, Javier, Llorente-Cortés, Vicenta, Sánchez-Quesada, José Luis, and de Gonzalo-Calvo, David
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MICRORNA , *LIPOPROTEINS , *LOW density lipoproteins , *FUNCTIONAL analysis , *ULTRACENTRIFUGATION - Abstract
Lipoproteins have been described as microRNAs (miRNAs) carriers. Unfortunately, the bibliography on this topic is scarce and shows a high variability between independent investigations. In addition, the miRNA profiles of the LDL and VLDL fractions have not been completely elucidated. Here, we profiled the human circulating lipoprotein-carried miRNome. Lipoprotein fractions (VLDL, LDL and HDL) were isolated from the serum of healthy subjects by ultracentrifugation and purified by size-exclusion chromatography. A panel of 179 miRNAs commonly expressed in circulation was evaluated in the lipoprotein fractions using quantitative real-time PCR (qPCR) assays. A total of 14, 4 and 24 miRNAs were stably detected in the VLDL, LDL and HDL fractions, respectively. VLDL- and HDL-miRNA signatures were highly correlated (rho 0.814), and miR-16–5p, miR-142–3p, miR-223–3p and miR-451a were among the top 5 expressed miRNAs in both fractions. miR-125a-5p, miR-335–3p and miR-1260a, were detected in all lipoprotein fractions. miR-107 and miR-221–3p were uniquely detected in the VLDL fraction. HDL showed the larger number of specifically detected miRNAs (n = 13). Enrichment in specific miRNA families and genomic clusters was observed for HDL-miRNAs. Two sequence motifs were also detected for this group of miRNAs. Functional enrichment analysis including the miRNA signatures from each lipoprotein fraction suggested a potential role in mechanistic pathways previously associated with cardiovascular disease: fibrosis, senescence, inflammation, immune response, angiogenesis, and cardiomyopathy. Collectively, our results not only support the role of lipoproteins as circulating miRNA carriers but also describe for the first time the role of VLDL as a miRNA transporter. [Display omitted] • Lipoproteins, including VLDL, act as miRNA carriers. • The miRNA profile of VLDL and HDL show high similarity. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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