1. Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil
- Author
-
Eleonora Campos, Diego Herman Sauka, Silvina Ghio, Florencia E Piccini, Ornella Mailén Ontañon, and Alejandro E. Ferrari
- Subjects
0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,biology ,Strain (chemistry) ,Nucleic acid sequence ,Fatty acid ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,DNA sequencing ,03 medical and health sciences ,Paenibacillus ,030104 developmental biology ,chemistry ,Botany ,Xylanase ,Ecology, Evolution, Behavior and Systematics ,Bacteria - Abstract
A xylanolytic bacterial strain, named A59T, was isolated from a forest soil consortium in southern Argentina. Strain A59T is a Gram-stain-positive, facultative anaerobic, endospore-forming and rod-shaped bacterium. Its optimal growth conditions are 30 °C (range, 28–37 °C), pH 7 (range, pH 5–10) and it tolerates up to 7 % of NaCl (range, 2–7 %). Chemotaxonomic analysis revealed that strain A59Tpossesses meso-diaminopimelic acid in the cell wall. It contains menaquinone MK-7 as the predominant isoprenoid quinone and the major fatty acid is anteiso-C15 : 0 (35.1 %), with a moderate amount of C16 : 0 (6.9 %). According to 16S RNA gene sequence analysis, the isolate is phylogenetically placed in the same cluster as Paenibacillus taichungensis BCRC 17757T (99.7 % nucleotide sequence identity) and Paenibacillus pabuli NBRC 13638T (99.1 %) and is closely related to Paenibacillus tundrae A10bT (98.8 %). However, phylogenetic studies based on the housekeeping gyrB gene placed A59T in a separate branch from all other related type strains. Furthermore, the results of whole genome average nucleotide identity analysis (gANI) with related type strains was lower than 91.10 % and the digital DNA–DNA hybridization value was lower than 44.30 %, which are below the threshold values for separating two species. The DNA G+C content was estimated as 46.09 mol%, based on genome sequencing. On the basis of these results, A59T represents a new species of the genus Paenibacillus , and we propose the name Paenibacillus xylanivorans sp. nov. The type strain is A59T (=DSM 107920T=NCIMB 15123T).
- Published
- 2019