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The South China Sea throughflow (SCSTF) connects the South China Sea (SCS) with neighboring seas and oceans, transferring surface water of the global thermohaline circulation between the Pacific and Indian oceans. A configuration of the SYMPHONIE ocean model at high resolution (4 km) and including an explicit representation of tides is implemented over this region, and a simulation is analyzed over 2010–2018. Comparisons with in situ and satellite data and other available simulations at coarser resolution show the good performance of the model and the relevance of the high resolution for reproducing the spatial and temporal variability of the characteristics of surface dynamics and water masses over the SCS. The added value of an online computation of each term of the water, heat, and salt SCS budgets (surface, lateral oceanic and river fluxes, and internal variations) is also quantitatively demonstrated: important discards are obtained with offline computation, with relative biases of ∼40 % for lateral oceanic inflows and outflows. The SCS water volume budget, including the SCSTF, is analyzed at climatological and seasonal scales. The SCS receives on average a 4.5 Sv yearly water volume input, mainly from the Luzon Strait. It laterally releases this water to neighboring seas, mainly to the Sulu Sea through Mindoro Strait (49 %), to the East China Sea via Taiwan Strait (28 %), and to the Java Sea through Karimata Strait (22 %). The seasonal variability of this water volume budget is driven by lateral interocean exchanges. Surface interocean exchanges, especially at Luzon Strait, are all driven by monsoon winds that favor winter southwestward flows and summer northeastward surface flows. Exchanges through Luzon Strait deep layers show a stable sandwiched structure with vertically alternating inflows and outflows. Last, differences in flux estimates induced by the use of a high-resolution model vs. a low-resolution model are quantified.

Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, which is considered to be a hotspot of biodiversity and climate change. In the framework of the DEWEX (Dense Water Experiment) project, the seasonal and annual budgets of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea are investigated over the period September 2012–September 2013 using a 3D coupled physical–biogeochemical–chemical modeling approach. At the annual scale, we estimate that the northwestern Mediterranean Sea's deep-convection region was a moderate sink of 0.5 mol C m−2 yr−1 of CO2 for the atmosphere. The model results show the reduction of oceanic CO2 uptake during deep convection and its increase during the abrupt spring phytoplankton bloom following the deep-convection events. We highlight the major roles in the annual dissolved inorganic carbon budget of both the biogeochemical and physical fluxes, which amount to −3.7 and 3.3 mol C m−2 yr−1, respectively, and are 1 order of magnitude higher than the air–sea CO2 flux. The upper layer (from the surface to 150 m depth) of the northwestern deep-convection region gained dissolved inorganic carbon through vertical physical transport and, to a lesser extent, oceanic CO2 uptake, and it lost dissolved inorganic carbon through lateral transport and biogeochemical fluxes. The region, covering 2.5 % of the Mediterranean, acted as a source of dissolved inorganic carbon for the surface and intermediate water masses of the Balearic Sea and southwestern Mediterranean Sea and could represent up to 22 % and 11 %, respectively, of the CO2 exchanges with the Atlantic Ocean at the Strait of Gibraltar.

The Rhodes Gyre is a cyclonic persistent feature of the general circulation of the Levantine Basin in the eastern Mediterranean Sea. Although it is located in the most oligotrophic basin of the Mediterranean Sea, it is a relatively high primary production area due to strong winter nutrient supply associated with the formation of Levantine Intermediate Water. In this study, a 3D coupled hydrodynamic–biogeochemical model (SYMPHONIE/Eco3M-S) was used to characterize the seasonal and interannual variability of the Rhodes Gyre's ecosystem and to estimate an annual organic carbon budget over the 2013–2020 period. Comparisons of model outputs with satellite data and compiled in situ data from cruises and Biogeochemical-Argo floats revealed the ability of the model to reconstruct the main seasonal and spatial biogeochemical dynamics of the Levantine Basin. The model results indicated that during the winter mixing period, phytoplankton first progressively grow sustained by nutrient supply. Then, short episodes of convection driven by heat loss and wind events, favoring nutrient injections, organic carbon export, and inducing light limitation on primary production, alternate with short episodes of phytoplankton growth. The estimate of the annual organic carbon budget indicated that the Rhodes Gyre is an autotrophic area, with a positive net community production in the upper layer (0–150 m) amounting to 31.2 ± 6.9 gCm-2yr-1. Net community production in the upper layer is almost balanced over the 7-year period by physical transfers, (1) via downward export (16.8 ± 6.2 gCm-2yr-1) and (2) through lateral transport towards the surrounding regions (14.1 ± 2.1 gCm-2yr-1). The intermediate layer (150–400 m) also appears to be a source of organic carbon for the surrounding Levantine Sea (7.5 ± 2.8 gCm-2yr-1) mostly through the subduction of Levantine Intermediate Water following winter mixing. The Rhodes Gyre shows high interannual variability with enhanced primary production, net community production, and exports during years marked by intense heat losses and deep mixed layers. However, annual primary production appears to be only partially driven by winter vertical mixing. Based on our results, we can speculate that future increase of temperature and stratification could strongly impact the carbon fluxes in this region.

The Gulf of Lion shelf (GoL, NW Mediterranean) is one of the most productive areas in the Mediterranean Sea. A 3D coupled hydrodynamic–biogeochemical model is used to study the mechanisms that drive the particulate organic carbon (POC) dynamics over the shelf. A set of observations, including temporal series from a coastal station, remote sensing of surface chlorophyll a, and a glider deployment, is used to validate the distribution of physical and biogeochemical variables from the model. The model reproduces the time and spatial evolution of temperature, chlorophyll a, and nitrate concentrations well and shows a clear annual cycle of gross primary production and respiration. We estimate an annual net primary production of ∼ 200 × 104 t C yr−1 at the scale of the shelf. The primary production is marked by a coast-slope increase with maximal values in the eastern region. Our results show that the primary production is favoured by the inputs of nutrients imported from offshore waters, representing 3 and 15 times the inputs of the Rhône in terms of nitrate and phosphate. In addition, the empirical orthogonal function (EOF) decomposition highlights the role of solar radiation anomalies and continental winds that favour upwellings, and inputs of the Rhône River, in annual changes in the net primary production. Annual POC deposition (27 × 104 t C yr−1) represents 13 % of the net primary production. The delivery of terrestrial POC favours the deposition in front of the Rhône mouth, and the mean cyclonic circulation increases the deposition between 30 and 50 m depth from the Rhône prodelta to the west. Mechanisms responsible for POC export (24 × 104 t C yr−1) to the open sea are discussed. The export off the shelf in the western part, from the Cap de Creus to the Lacaze-Duthiers canyon, represents 37 % of the total POC export. Maximum values are obtained during shelf dense water cascading events and marine winds. Considering surface waters only, the POC is mainly exported in the eastern part of the shelf through shelf waters and Rhône inputs, which spread to the Northern Current during favourable continental wind conditions. The GoL shelf appears as an autotrophic ecosystem with a positive net ecosystem production and as a source of POC for the adjacent NW Mediterranean basin. The undergoing and future increase in temperature and stratification induced by climate change could impact the trophic status of the GoL shelf and the carbon export towards the deep basin. It is crucial to develop models to predict and assess these future evolutions.

The north-western Mediterranean deep convection plays a crucial role in the general circulation and biogeochemical cycles of the Mediterranean Sea. The DEWEX (DEnse Water EXperiment) project aimed to better understand this role through an intensive observation platform combined with a modelling framework. We developed a three-dimensional coupled physical and biogeochemical model to estimate the cycling and budget of dissolved oxygen in the entire north-western Mediterranean deep-convection area over the period September 2012 to September 2013. After showing that the simulated dissolved oxygen concentrations are in a good agreement with the in situ data collected from research cruises and Argo floats, we analyse the seasonal cycle of the air–sea oxygen exchanges, as well as physical and biogeochemical oxygen fluxes, and we estimate an annual oxygen budget. Our study indicates that the annual air-to-sea fluxes in the deep-convection area amounted to 20 molm-2yr-1. A total of 88 % of the annual uptake of atmospheric oxygen, i.e. 18 mol m−2, occurred during the intense vertical mixing period. The model shows that an amount of 27 mol m−2 of oxygen, injected at the sea surface and produced through photosynthesis, was transferred under the euphotic layer, mainly during deep convection. An amount of 20 mol m−2 of oxygen was then gradually exported in the aphotic layers to the south and west of the western basin, notably, through the spreading of dense waters recently formed. The decline in the deep-convection intensity in this region predicted by the end of the century in recent projections may have important consequences on the overall uptake of atmospheric oxygen in the Mediterranean Sea and on the oxygen exchanges with the Atlantic Ocean, which appear necessary to better quantify in the context of the expansion of low-oxygen zones.

Consequences of tidal dynamics on hydro-sedimentary processes are a recurrent issue in estuarine and coastal processes studies, and accurate tidal solutions are a prerequisite for modeling sediment transport, especially in macro-tidal regions. The motivation for the study presented in this publication is to implement and optimize a model configuration that will satisfy this prerequisite in the frame of a larger objective in order to study the sediment dynamics and fate from the Red River Delta to the Gulf of Tonkin from a numerical hydrodynamical–sediment coupled model. Therefore, we focus on the main tidal constituents to conduct sensitivity experiments on the bathymetry and bottom friction parameterization. The frequency-domain solver available in the hydrodynamic unstructured grid model T-UGOm has been used to reduce the computational cost and allow for wider parameter explorations. Tidal solutions obtained from the optimal configuration were evaluated from tide measurements derived from satellite altimetry and tide gauges; the use of an improved bathymetry dataset and fine friction parameter adjustment significantly improved our tidal solutions. However, our experiments seem to indicate that the solution error budget is still dominated by bathymetry errors, which is the most common limitation for accurate tidal modeling.

This study presents the principles of the new coupling interface based on the SURFEX multi-surface model and the OASIS3-MCT coupler. As SURFEX can be plugged into several atmospheric models, it can be used in a wide range of applications, from global and regional coupled climate systems to high-resolution numerical weather prediction systems or very fine-scale models dedicated to process studies. The objective of this development is to build and share a common structure for the atmosphere–surface coupling of all these applications, involving on the one hand atmospheric models and on the other hand ocean, ice, hydrology, and wave models. The numerical and physical principles of SURFEX interface between the different component models are described, and the different coupled systems in which the SURFEX OASIS3-MCT-based coupling interface is already implemented are presented.

The spatial and temporal resolution of satellite altimetry is usually sufficient for monitoring the changes of sea surface topography in the open ocean. However, coastal ocean dynamics are much more complex, being characterized by smaller spatial and temporal scales of variability. The quality and availability of satellite-derived products along the coasts have to be improved, with a strategy optimized for coastal targets. Therefore a coastal multi-satellite altimetry dataset (TOPEX/Poseidon, Jason-1; Envisat; GFO) at a 10 - 20 Hz sampling rate has been derived from routine geophysical data products using a new processing software dedicated to coastal zone applications. Improved along-track sea level variations with fine space scales are available in the North-western Mediterranean Sea from 2001 to 2003, and are compared with high-resolution numerical model elevations from the eddy-resolving model SYMPHONIE. This preparatory work emphasizes the potential of improved multi-satellite altimetry for validating coastal hydro-dynamical models and could contribute in the future to a better tuning of the boundary conditions of the simulations.