49 results on '"Akira Onoda"'
Search Results
2. One‐step Preparation of Fe/N/C Single‐atom Catalysts Containing Fe−N4 Sites from an Iron Complex Precursor with 5,6,7,8‐Tetraphenyl‐1,12‐diazatriphenylene Ligands
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Masaru Kato, Ichizo Yagi, Stephane Campidelli, Shin Ichiro Noro, Takashi Hayashi, Norimitsu Tohnai, Kiyotaka Asakura, Akira Onoda, Siqi Xie, Koki Matsumoto, Graduate School of Engineering, Osaka University, Graduate School of Engineering, Graduate School of Environmental Science, Hokkaido University, Hokkaido University [Sapporo, Japan], institute of catalysis, Hokkaido University of Science, Laboratoire Innovation en Chimie des Surfaces et NanoSciences (LICSEN UMR 3685), Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie (ex SIS2M) (NIMBE UMR 3685), Institut Rayonnement Matière de Saclay (IRAMIS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut Rayonnement Matière de Saclay (IRAMIS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), JSPS KAKENHI Grant Numbers 25708031, JP15H03857, JP15H05804, and JP19K22202, JP19H04579, and the Iketani Science and Technology Foundation., Laboratoire Innovation en Chimie des Surfaces et NanoSciences (LICSEN), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Institut Rayonnement Matière de Saclay (IRAMIS), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)
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X-ray absorption spectroscopy ,Absorption spectroscopy ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Aromaticity ,General Chemistry ,Carbon black ,[CHIM.MATE]Chemical Sciences/Material chemistry ,010402 general chemistry ,Electrochemistry ,01 natural sciences ,Redox ,Catalysis ,0104 chemical sciences ,Polymer chemistry ,Pyrolysis - Abstract
International audience; Fe/N/C single-atom catalysts containing Fe−N x sites prepared by pyrolysis are promising cathode materials for fuel cells and metal-air batteries due to their high oxygen reduction reaction (ORR) activities. We have developed iron complexes containing N2- or N3-chelating coordination structures with preorganized aromatic rings in a 1,12-diazatriphenylene framework tethering bromo substituents as precursors to precisely construct Fe−N 4 sites in an Fe/N/C catalyst. One-step pyrolysis of the iron complex with carbon black forms atomically dispersed Fe−N 4 sites without iron aggregates. X-ray absorption spectroscopy (XAS) and electrochemical measurements revealed that the iron complex with N3-coordination is more effectively converted to Fe−N 4 sites catalyzing ORR with a TOF value of 0.21 e∙site −1 ∙s −1 at 0.8 V vs RHE. This indicates that the formation of Fe−N 4 sites is controlled by precise tuning of the chemical structure of the iron complex precursor.
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- 2022
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3. Cavity Size Engineering of a β-Barrel Protein Generates Efficient Biohybrid Catalysts for Olefin Metathesis
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Alexander R. Grimm, Leilei Zhu, Mehdi D. Davari, Jun Okuda, Marco Bocola, Akira Onoda, Shunsuke Kato, Ulrich Schwaneberg, Daniel F. Sauer, and Takashi Hayashi
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inorganic chemicals ,chemistry.chemical_classification ,Scaffold ,010405 organic chemistry ,Chemistry ,General Chemistry ,Protein engineering ,010402 general chemistry ,Metathesis ,01 natural sciences ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,Amino acid ,Barrel ,Polymerization ,Covalent bond - Abstract
Incorporation of a synthetic metal catalyst into a protein scaffold yields a biohybrid catalyst, with a remarkable performance in aqueous media and the broad reaction scope of organometallic catalysts. A major challenge for efficient catalysis is the design of the interface between the protein scaffold and the metal catalyst. Until now, protein scaffolds have primarily been engineered by exchanging individual amino acids to anchor metal catalysts and alter their immediate environment. Here, cavity size engineering of the β-barrel protein nitrobindin was performed by duplicating multiple β-strands to generate an expanded variant. The approach of cavity size engineering enabled covalent incorporation of bulky catalysts at excellent coupling efficiencies and yielded excellent conversions in olefin metathesis, including ring-closing metathesis, ring-opening metathesis polymerization, and cross metathesis (conversions up to 99% and turnover numbers up to 10000).
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- 2018
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4. Cofactor-specific Anchoring of Horseradish Peroxidase onto a Polythiophene-modified Electrode
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Yasunari Umeda, Takashi Hayashi, and Akira Onoda
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biology ,010405 organic chemistry ,food and beverages ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Horseradish peroxidase ,Cofactor ,0104 chemical sciences ,Indium tin oxide ,chemistry.chemical_compound ,chemistry ,Electrode ,biology.protein ,Moiety ,Polythiophene ,Hydrogen peroxide ,Heme - Abstract
Horseradish peroxidase apoprotein (apoHRP) was immobilized on a heme-modified polythiophene film, which was electropolymerized on an indium tin oxide surface to yield immobilized and reconstituted HRP. The HRP-immobilized electrode exhibits a 6-fold enhanced electrochemical response toward hydrogen peroxide reduction relative to having the protein randomly immobilized on the polythiophene electrode. This indicates that the insertion of the heme moiety into the heme pocket of HRP leads to an increase in the electrocatalytic current.
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- 2017
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5. A Pyrene-Linked Cavity within a β-Barrel Protein Promotes an Asymmetric Diels-Alder Reaction
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Takashi Hayashi, Akira Onoda, Shunsuke Kato, Tomoki Himiyama, and Naomasa Taniguchi
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Hemeproteins ,Models, Molecular ,Cyclopentadiene ,Stereochemistry ,Arabidopsis ,Cyclopentanes ,010402 general chemistry ,01 natural sciences ,Catalysis ,Coupling reaction ,Maleimides ,Heme-Binding Proteins ,chemistry.chemical_compound ,Moiety ,Maleimide ,Diels–Alder reaction ,Aza Compounds ,Pyrenes ,Cycloaddition Reaction ,Arabidopsis Proteins ,010405 organic chemistry ,Regioselectivity ,General Medicine ,General Chemistry ,0104 chemical sciences ,chemistry ,Yield (chemistry) ,Pyrene ,Protein Conformation, beta-Strand ,Copper - Abstract
A unique π-expanded reaction cavity tethering a polycyclic moiety which provides a platform for substrate binding was constructed within the robust β-barrel structure of nitrobindin (NB). NB variants with cavities of different sizes and shapes are coupled with N-(1-pyrenyl)maleimide (Pyr) to prepare a series of NB-Pyr conjugates. The orientation of the pyrene moiety is fixed within the cavity by the coupling reaction. The fluorescent quenching analysis of NB-Pyr indicates that azachalcone (aza), which is a dienophile for a Diels-Alder (DA) reaction, is efficiently incorporated within the pyrene-linked reaction cavity by the aromatic interaction. The DA reaction between aza and cyclopentadiene proceeds within the reaction cavity of NB-Pyr in the presence of CuII ion in high yield and high enantio- and regioselectivity.
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- 2017
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6. Enhanced visible light response of a WO3 photoelectrode with an immobilized fibrous gold nanoparticle assembly using an amyloid-β peptide
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Ryo Yamanaka, Shinichi Sakurai, Hirofumi Harada, Takashi Hayashi, Taro Uematsu, Susumu Kuwabata, and Akira Onoda
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Photocurrent ,chemistry.chemical_classification ,Chemistry ,General Chemical Engineering ,Visible light irradiation ,Nanoparticle ,Nanotechnology ,Peptide ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Tin oxide ,Photochemistry ,01 natural sciences ,Amyloid β peptide ,0104 chemical sciences ,Electrode ,0210 nano-technology ,Visible spectrum - Abstract
A WO3 photoelectrode immobilizing a fibrous gold nanoparticle (AuNP) assembly using an amyloid-β (Aβ) peptide was constructed and its ability for photocurrent generation upon visible light irradiation was investigated. AuNPs attached using Aβ peptide (Aβ-AuNP) assemble with a fibrous structure at pH 4.5, which disperses at pH 11. The modified Aβ-AuNPs are immobilized on the surface of WO3 fabricated on a fluorine-doped tin oxide (FTO) electrode (Aβ-AuNPass@WO3/FTO or Aβ-AuNPdis@WO3/FTO, respectively). The photocurrent generation response of the Aβ-AuNPass@WO3/FTO electrode is clearly increased relative to that of Aβ-AuNPdis@WO3/FTO upon visible light irradiation (λ = 420–750 nm), indicating that the fibrous AuNP assembly enhances the visible light response of the WO3 photoelectrode.
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- 2017
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7. Hemoproteins Reconstituted with Artificial Metal Complexes as Biohybrid Catalysts
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Takashi Hayashi, Akira Onoda, and Koji Oohora
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Hemeprotein ,Oxygen storage ,010402 general chemistry ,Hydroxylation ,01 natural sciences ,Cofactor ,Catalysis ,Substrate Specificity ,chemistry.chemical_compound ,Electron transfer ,Protein structure ,Hydrogenase ,Coordination Complexes ,Heme ,Binding Sites ,biology ,010405 organic chemistry ,Myoglobin ,Hydrogen Bonding ,Stereoisomerism ,General Medicine ,General Chemistry ,Combinatorial chemistry ,0104 chemical sciences ,Protein Structure, Tertiary ,Heme B ,chemistry ,Metals ,biology.protein - Abstract
ConspectusIn nature, heme cofactor-containing proteins participate not only in electron transfer and O2 storage and transport but also in biosynthesis and degradation. The simplest and representative cofactor, heme b, is bound within the heme pocket via noncovalent interaction in many hemoproteins, suggesting that the cofactor is removable from the protein, leaving a unique cavity. Since the cavity functions as a coordination sphere for heme, it is of particular interest to investigate replacement of native heme with an artificial metal complex, because the substituted metal complex will be stabilized in the heme pocket while providing alternative chemical properties. Thus, cofactor substitution has great potential for engineering of hemoproteins with alternative functions. For these studies, myoglobin has been a focus of our investigations, because it is a well-known oxygen storage hemoprotein. However, the heme pocket of myoglobin has been only arranged for stabilizing the heme-bound dioxygen, so the st...
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- 2019
8. In SituObservation of Enhanced Photoinduced Charge Separation in a Gold Nanoparticle Assembly Immobilized on TiO2
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Shiho Moriguchi, Hirofumi Harada, Akira Onoda, and Takashi Hayashi
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In situ ,Streptavidin ,Materials science ,Nanoparticle ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Photochemistry ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Photoinduced charge separation ,Excited state ,Titanium dioxide ,Microscopy ,0210 nano-technology ,Volta potential - Abstract
Photoinduced charge separation on a hybrid titanium dioxide (TiO2) surface with a gold nanoparticle (AuNP) assembly immobilized via a biotin-streptavidin interaction was visualized by Kelvin force microscopy (KFM). Biotinylated AuNP (Biot-AuNP) with a diameter of ca. 15 nm was assembled using streptavidin (STV) and the AuNP assembly was immobilized on a TiO2 surface modified with 1-(3-aminopropyl)silatrane. KFM reveals that the local contact potential difference (CPD) of dispersed AuNP, which is −17 ± 4.2 mV in the dark, undergoes a negative shift of −46 ± 3.0 mV upon UV-irradiation (λ=240-300 nm). In contrast, the AuNP assembly on the TiO2 surface exhibits a greater negative shift of −58 ± 6.0 mV of the CPD, although the CPD value of −16 ± 5.8 mV in the dark is similar to that of the dispersed AuNP. KFM visualization demonstrates that assembly of the AuNP on the TiO2 surface contributes to efficient storage of the negative charge generated by excited electrons in TiO2 during photoinduced charge separation.
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- 2016
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9. Oxygen-binding Protein Fiber and Microgel: Supramolecular Myoglobin-Poly(acrylate) Conjugates
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Takashi Hayashi, Akira Onoda, Koji Oohora, Toshikazu Ono, and Yasushi Hisaoka
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Hemeprotein ,Polymers ,Supramolecular chemistry ,Conjugated system ,010402 general chemistry ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Polymer chemistry ,chemistry.chemical_classification ,Acrylate ,Molecular Structure ,Myoglobin ,010405 organic chemistry ,Organic Chemistry ,General Chemistry ,Polymer ,0104 chemical sciences ,Oxygen ,Monomer ,Acrylates ,chemistry ,Carrier Proteins ,Gels ,Oxygen binding - Abstract
A supramolecular conjugate of myoglobin (Mb) and water-soluble poly(acrylate), (PA5k and PA25k , where 5k and 25k represent the molecular weight of the polymers, respectively), is constructed on the basis of a noncovalent heme-heme pocket interaction. The modified heme with an amino group linked to the terminus of one of the heme-propionates is coupled to the side-chain carboxyl groups of poly(acrylate) activated by N-hydroxysuccinimide. The ratios of the heme-modified monomer unit and the unmodified monomer unit (m:n) in the polymer chains of Heme-PA5k and Heme-PA25k were determined to be 4.5:95.5 and 3.1:96.9, respectively. Subsequent addition of apoMb to the conjugated polymers provides Mb-connected fibrous nanostructures confirmed by atomic force microscopy. A mixture of the heme-modified polymer and dimeric apomyoglobin as a cross-linker forms a microgel in which the reconstituted myoglobin retains its native exogenous ligand binding activity.
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- 2016
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10. A Highly Active Biohybrid Catalyst for Olefin Metathesis in Water: Impact of a Hydrophobic Cavity in a β-Barrel Protein
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Kengo Tachikawa, Marco Bocola, Daniel F. Sauer, Tomoki Himiyama, Eiichi Mizohata, Takashi Hayashi, Jun Okuda, Akira Onoda, Tsuyoshi Inoue, Kazuki Fukumoto, and Ulrich Schwaneberg
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chemistry.chemical_element ,General Chemistry ,ROMP ,Metathesis ,Catalysis ,Ruthenium ,chemistry.chemical_compound ,chemistry ,Polymer chemistry ,Ring-opening metathesis polymerisation ,Moiety ,Hydroxymethyl ,Maleimide ,Acyclic diene metathesis - Abstract
A series of Grubbs–Hoveyda type catalyst precursors for olefin metathesis containing a maleimide moiety in the backbone of the NHC ligand was covalently incorporated in the cavity of the β-barrel protein nitrobindin. By using two protein mutants with different cavity sizes and choosing the suitable spacer length, an artificial metalloenzyme for olefin metathesis reactions in water in the absence of any organic cosolvents was obtained. High efficiencies reaching TON > 9000 in the ROMP of a water-soluble 7-oxanorbornene derivative and TON > 100 in ring-closing metathesis (RCM) of 4,4-bis(hydroxymethyl)-1,6-heptadiene in water under relatively mild conditions (pH 6, T = 25–40 °C) were observed.
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- 2015
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11. meso-Dibenzoporphycene has a Large Bathochromic Shift and a Porphycene Framework with an UnusualcisTautomeric Form
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Tamaki Fukuda, Takashi Hayashi, Jun-ya Hasegawa, Ayumu Ogawa, Akira Onoda, and Koji Oohora
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Stereochemistry ,General Medicine ,General Chemistry ,Carbon-13 NMR ,Tautomer ,Catalysis ,chemistry.chemical_compound ,Crystallography ,chemistry ,Bathochromic shift ,Molecule ,Benzene ,Ground state ,Spectroscopy ,HOMO/LUMO - Abstract
meso-Monobenzoporphycene (mMBPc) and meso-dibenzoporphycene (mDBPc), in which one or two benzene moieties are fused at ethylene-bridged positions (meso-positions) of porphycene, were prepared in an effort to further delocalize the π-electrons within the porphycene molecule. mMBPc and mDBPc were fully characterized by mass spectrometry, (1)H and (13)C NMR spectroscopy, and X-ray crystallography. The longest-wavelength Q-bands of mMBPc and mDBPc are red-shifted by 92 nm and 418 nm, respectively, compared to that of the unsubstituted porphycene (Pc). Electrochemical measurements indicate that the HOMO is destabilized and the LUMO is stabilized by the fused benzene moieties at the meso positions. Furthermore, both XPS and theoretical studies support the presence of a cis tautomeric form in the ground state of mDBPc, despite the fact that essentially all known porphycene derivatives adopt the trans tautomeric form.
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- 2015
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12. Myoglobin-based non-precious metal carbon catalysts for an oxygen reduction reaction
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Takashi Hayashi, Shotaro Takeuchi, Toshikazu Ono, Yuta Tanaka, Akira Sakai, and Akira Onoda
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chemistry.chemical_compound ,Chemistry ,Carbonization ,Nafion ,Inorganic chemistry ,chemistry.chemical_element ,General Chemistry ,Carbon black ,Pyrolytic carbon ,Rotating disk electrode ,Carbon ,Pyrolysis ,Catalysis - Abstract
A non-precious metal catalyst (NPMC) promoting a four-electron oxygen reduction reaction (ORR) was synthesized by heat treatment of myoglobin (Mb) containing a heme (iron protoporphyrin IX) as a source of iron, nitrogen, and carbon atoms. Samples of the mixture of Mb and carbon black (Vulcan XC72R: VC) were pyrolyzed at 740, 840, 940, 1040 or 1140°C under N2flow. The microstructures of the carbonized Mb catalysts were characterized by XRD, Raman spectroscopy, XPS, and TEM. Results indicate that the iron-containing active site is embedded within the surface structure in an amorphous domain of the carbon materials. The catalyst ink in a 0.05 wt% Nafion solution in isopropanol was coated onto a glassy carbon electrode and the ORR activity of Mb-based NPMCs was evaluated in a rotating disk electrode experiment in an O2-saturated 0.1 M HClO4solution at 25°C. The catalyst synthesized at 940°C has the highest ORR activity in terms of the onset potential and the current density. In contrast, pyrolytic temperatures above 940°C decrease the activity, suggesting that the active structure of the catalyst apparently decomposes at higher temperatures. The Koutecky–Levich plots indicate that the Mb-based catalyst prepared at 940°C catalyzes four-electron ORR (n = ca. 4). The catalysts prepared at other temperatures have n values of 3.6 at 740°C, 3.7 at 840°C, and 2.9 at 1040°C. The ORR of Mb/VC is diffusion-controlled at potentials lower than 0.3 V (vs. RHE) and the onset potential is 0.84 ± 0.01 V.
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- 2015
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13. Bimetallic M/N/C catalysts prepared from π-expanded metal salen precursors toward an efficient oxygen reduction reaction
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Koki Matsumoto, Hidehiro Yasuda, Takao Sakata, Akira Onoda, Minoru Ito, Takashi Hayashi, and Yuta Tanaka
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Ligand ,General Chemical Engineering ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Cathode ,0104 chemical sciences ,Catalysis ,law.invention ,Metal ,chemistry ,Transmission electron microscopy ,law ,visual_art ,visual_art.visual_art_medium ,0210 nano-technology ,Bimetallic strip ,Pyrolysis ,Carbon - Abstract
Nonprecious metal electrocatalysts are being explored as alternatives to platinum-group metal electrocatalysts for the oxygen reduction reaction (ORR) which is required for cathode materials in fuel cells. Herein, we describe a new method for preparing bimetallic nitrogen-containing carbon catalysts with high ORR activity using π-expanded M(salen) precursors. The M/N/C and bimetallic FeM/N/C ORR catalysts were obtained by pyrolysis of a mixture of a carbon support (Vulcan XC-72R) and the metal complex as a precursor. The bimetallic FeCu catalyst prepared from Fe and Cu complexes with the N,N′-bis(2-hydroxy-1-naphthylidene)-1,2-phenylenediamine ligand (2NAPD) is found to have an onset potential of 0.87 V, which is positively shifted by 50 mV from that of the catalyst prepared from the monometallic Fe(2NAPD) complex. The FeCu/N/C catalyst promotes efficient four-electron reduction in the ORR. High-resolution transmission electron microscopy studies reveal that both Fe and Cu metals together with pyridinic nitrogen species are highly dispersed within the carbonaceous structure in FeCu/2NAPD@VC, suggesting that the N-coordinated Fe and Cu sites promote efficient four-electron reduction of O2. This new methodology facilitates design of nonprecious bimetallic carbon catalysts with excellent ORR activity.
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- 2017
14. A water-soluble supramolecular complex that mimics the heme/copper hetero-binuclear site of cytochrome
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Takehiro Ohta, Ryo Kamiya, Jennifer A. Wytko, Jean Weiss, Daiki Shimoji, Takashi Hayashi, Koji Kano, Yasuhiro Kudo, Hiroaki Kitagishi, Akira Onoda, Picobiology Institute, Graduate School of Life Science, University of Hyogo, Department of Applied Chemistry, Osaka University [Osaka], Department of Economics, University of Texas at Austin, University of Texas at Austin [Austin], Institut de Chimie de Strasbourg, Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), and Centre National de la Recherche Scientifique (CNRS)-Université Louis Pasteur - Strasbourg I-Institut de Chimie du CNRS (INC)
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Dimer ,Supramolecular chemistry ,chemistry.chemical_element ,macromolecular substances ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,Polymer chemistry ,polycyclic compounds ,Cytochrome c oxidase ,[CHIM.COOR]Chemical Sciences/Coordination chemistry ,Rotating disk electrode ,Heme ,Aqueous solution ,biology ,010405 organic chemistry ,Chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,technology, industry, and agriculture ,Active site ,General Chemistry ,Copper ,0104 chemical sciences ,carbohydrates (lipids) ,biology.protein ,lipids (amino acids, peptides, and proteins) - Abstract
The O2 adduct of an aqueous synthetic heme/copper model system built on a porphyrin/cyclodextrin supramolecular complex has been characterized., In mitochondria, cytochrome c oxidase (CcO) catalyses the reduction of oxygen (O2) to water by using a heme/copper hetero-binuclear active site. Here we report a highly efficient supramolecular approach for the construction of a water-soluble biomimetic model for the active site of CcO. A tridentate copper(ii) complex was fixed onto 5,10,15,20-tetrakis(4-sulfonatophenyl)porphinatoiron(iii) (FeIIITPPS) through supramolecular complexation between FeIIITPPS and a per-O-methylated β-cyclodextrin dimer linked by a (2,2′:6′,2′′-terpyridyl)copper(ii) complex (CuIITerpyCD2). The reduced FeIITPPS/CuITerpyCD2 complex reacted with O2 in an aqueous solution at pH 7 and 25 °C to form a superoxo-type FeIII–O2–/CuI complex in a manner similar to CcO. The pH-dependent autoxidation of the O2 complex suggests that water molecules gathered at the distal Cu site are possibly involved in the FeIII–O2–/CuI superoxo complex in an aqueous solution. Electrochemical analysis using a rotating disk electrode demonstrated the role of the FeTPPS/CuTerpyCD2 hetero-binuclear structure in the catalytic O2 reduction reaction.
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- 2017
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15. A supramolecular assembly based on an engineered hemoprotein exhibiting a thermal stimulus-driven conversion to a new distinct supramolecular structure
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Yuta Tanaka, Koji Oohora, Akira Onoda, Yoshitaka Onuma, and Takashi Hayashi
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Hemeproteins ,Hemeprotein ,Macromolecular Substances ,Supramolecular chemistry ,010402 general chemistry ,Photochemistry ,Protein Engineering ,01 natural sciences ,Catalysis ,Supramolecular assembly ,chemistry.chemical_compound ,Thermal stimulation ,Materials Chemistry ,Moiety ,Heme ,Micelles ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Metals and Alloys ,General Chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Kinetics ,Azobenzene ,Ceramics and Composites ,Thermodynamics ,Linker - Abstract
Supramolecular assembly of an engineered hemoprotein with an externally-attached heme moiety via an azobenzene or stilbene linker demonstrates drastic structural transitions between two distinct forms: the thermodynamically stable fiber-type assembly and the kinetically trapped metastable micelle-type assembly induced by transient thermal stimulus.
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- 2017
16. Generation of New Artificial Metalloproteins by Cofactor Modification of Native Hemoproteins
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Takashi Hayashi, Akira Onoda, and Yohei Sano
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chemistry.chemical_classification ,Hemeprotein ,Hydrogenase ,biology ,Stereochemistry ,General Chemistry ,Photochemistry ,Cofactor ,Hydroxylation ,chemistry.chemical_compound ,chemistry ,Myoglobin ,Covalent bond ,biology.protein ,Metalloprotein ,Heme - Abstract
Heme can be removed from a number of native hemoproteins, thus forming corresponding apoproteins, each of which provides a site for binding of a metal complex. In one example, myoglobin, an O2 storage protein, can be reconstituted with iron porphycene to dramatically enhance the O2 affinity. Although it is known that myoglobin has poor enzymatic activity, the insertion of iron corrole or iron porphycene into apomyoglobin increases its H2O2-dependent peroxidase/peroxygenase activities. Furthermore, reconstitution with manganese porphycene promotes hydroxylation of an inert CH bond. It is also of interest to insert a non-porphyrinoid complex into an apoprotein. A cavity of apocytochrome c has been found to bind a diiron carbonyl complex, serving as a functional model of diiron hydrogenase. Aponitrobindin has a rigid β-barrel structure that provides an excellent cavity for covalently anchoring a metal complex. A rhodium complex embedded in the cavity of genetically modified nitrobindin has been found to promote stereoselective polymerization of phenylacetylene.
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- 2014
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17. Photoinduced Hydrogen Evolution Catalyzed by a Synthetic Diiron Dithiolate Complex Embedded within a Protein Matrix
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Takashi Hayashi, Yohei Sano, Yoshihiko Kihara, Akira Onoda, and Kazuki Fukumoto
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Tris ,chemistry.chemical_compound ,Residue (chemistry) ,chemistry ,Covalent bond ,Photocatalysis ,Moiety ,Photosensitizer ,General Chemistry ,Photochemistry ,Maleimide ,Catalysis - Abstract
The hydrogen-evolving diiron complex, (μ-S)2Fe2(CO)6 with a tethered maleimide moiety was synthesized and covalently embedded within the cavity of a rigid β-barrel protein matrix by coupling a maleimide moiety to a cysteine residue within the β-barrel. The (μ-S)2Fe2(CO)6 core within the cavity was characterized by UV–vis absorption and a characteristic CO vibration determined by IR measurements. The diiron complex embedded within the cavity retains the necessary catalytic activity (TON up to 130 for 6 h) to evolve H2 via a photocatalytic cycle with a Ru photosensitizer in a solution of 100 mM ascorbate and 50 mM Tris/HCl at pH 4.0 and 25 °C.
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- 2014
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18. Supramolecular protein–protein complexation via specific interaction between glycosylated myoglobin and sugar-binding protein
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Akira Onoda, Takashi Matsuo, Hirokazu Nagai, and Takashi Hayashi
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Peanut agglutinin ,chemistry.chemical_classification ,biology ,Disaccharide ,Lectin ,General Chemistry ,Lactobionic acid ,chemistry.chemical_compound ,chemistry ,Myoglobin ,Biochemistry ,Galactose ,biology.protein ,Monosaccharide ,Glycoprotein - Abstract
Two different types of artificial glycosylated haemins (glycohaemins), in which a monosaccharide (galactose) or a disaccharide (lactobionic acid, 4-O-β-galactopyranosyl-d-gluconic acid) was introduced at the terminals of the two haem-propionate side chains, were synthesised to serve as a designed interface on the myoglobin surface. These glycohaemins were successfully inserted into apomyoglobin to yield an artificial glycoprotein by the conventional method. The interprotein interaction between the reconstituted myoglobin and peanut agglutinin lectin (PNA), a β-galactose-recognising protein, was confirmed by two different assay systems, i.e. a fluorometric assay using the fluorescein isothiocyanate-labelled lectin and an ELISA-like assay using the peroxidase-labelled lectin. The results revealed that each myoglobin reconstituted with the glycohaemin makes a complex with PNA, in which the glycoprotein with the disaccharides showed a higher binding affinity with the lectin compared to the glycoprotein with t...
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- 2010
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19. Circular Dichroism of Neutral Zinc Porphyrin–Oligonucleotide Conjugates Modified with Flexible Linker
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Masahiro Igarashi, Shinya Ariyasu, Satoshi Naganawa, Takeshi Yamamura, Akira Onoda, and Kiyomi Sasaki
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chemistry.chemical_classification ,Zinc porphyrin ,Circular dichroism ,chemistry ,Oligonucleotide ,Polymer chemistry ,General Chemistry ,Photochemistry ,Linker ,Alkyl ,Conjugate - Abstract
Neutral zinc porphyrin containing flexible alkyl linker, 5-[4-(5-hydroxypentyloxy)phenyl]-10,15,20-tri-p-tolylporphyrinatozinc, was attached to the 5′ ends of 20- and 30-bp oligodeoxynucleotides (O...
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- 2009
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20. Calcium Ion Responsive DNA Binding in a Zinc Finger Fusion Protein
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Nozomi Arai, Takeshi Yamamura, Naoto Shimazu, Akira Onoda, and Hitoshi Yamamoto
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Models, Molecular ,Protein Folding ,Circular dichroism ,Magnetic Resonance Spectroscopy ,Recombinant Fusion Proteins ,Molecular Sequence Data ,Biochemistry ,DNA-binding protein ,Catalysis ,Troponin C ,Colloid and Surface Chemistry ,Animals ,Electrophoretic mobility shift assay ,Amino Acid Sequence ,Binding site ,Zinc finger ,Binding Sites ,Chemistry ,Circular Dichroism ,Zinc Fingers ,DNA ,General Chemistry ,Fusion protein ,DNA-Binding Proteins ,Solutions ,Calcium ,Protein folding - Abstract
Zinc finger fusion proteins, having a Ca-binding site from troponin C, were created to develop Ca-responsive regulation of DNA binding. The typical zinc finger folding of a novel fusion protein with a single finger, F2-Tn, was investigated using UV-vis spectroscopy of the Co-substituted form and CD experiments. Detailed structural analyses of F2-Tn/Zn2+ using NMR experiments and structural calculations clarify that our fusion protein gives a native zinc finger folding with the artificial Ca-binding domain intervening two helices. The Ca-responsive DNA-binding affinity of troponin-fused protein with two fingers (using F1F2-Tn) was investigated by electrophoretic mobility shift assay (EMSA). EMSA analyses of F1F2-Tn were performed under the conditions of various concentrations of the Ca ion. F1F2-Tn has a Kd value of 5.8 nM in the absence of Ca ion and shows a higher Kd value of 13 nM in the presence of 100 equiv of Ca ion. The artificially designed fusion zinc finger protein with a Ca-binding domain has Ca-responsive DNA-binding affinity. It is leading to a better understanding of the construction of zinc finger-based artificial transcriptional factors with a Ca switch.
- Published
- 2005
- Full Text
- View/download PDF
21. Stabilization of Carboxylate Anion with a NH···O Hydrogen Bond: Facilitation of the Deprotonation of Carboxylic Acid by the Neighboring Amide NH Groups
- Author
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Jiro Takeda, Yusuke Yamada, Mototsugu Doi, Yoshiki Nakayama, Hitoshi Yamamoto, Taka-aki Okamura, Norikazu Ueyama, and Akira Onoda
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,Deprotonation ,chemistry ,Hydrogen bond ,Amide ,Carboxylic acid ,Low-barrier hydrogen bond ,General Chemistry ,Carboxylate ,Photochemistry ,Medicinal chemistry ,Ion - Abstract
The formation of the NH···O hydrogen bonds of carboxylic acids, 2,6-(t-BuCONH)2C6H3COOH (1) and 2-t-BuCONH-6-MeC6H3COOH (2), carboxylate, [NEt4][2,6-(t-BuCONH)2C6H3COO] (3), and a mixed complex, [N...
- Published
- 2004
- Full Text
- View/download PDF
22. Cover Picture: A Pyrene-Linked Cavity within a β-Barrel Protein Promotes an Asymmetric Diels-Alder Reaction (Angew. Chem. Int. Ed. 44/2017)
- Author
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Naomasa Taniguchi, Shunsuke Kato, Tomoki Himiyama, Akira Onoda, and Takashi Hayashi
- Subjects
chemistry.chemical_compound ,Protein structure ,chemistry ,Stereochemistry ,INT ,Barrel (horology) ,Pyrene ,Cover (algebra) ,General Chemistry ,Catalysis ,Diels–Alder reaction - Published
- 2017
- Full Text
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23. Fabrication of enzyme-degradable and size-controlled protein nanowires using single particle nano-fabrication technique
- Author
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Shu Seki, Masaki Sugimoto, Atsushi Asano, Akinori Saeki, Takashi Hayashi, Daisuke Sakamaki, Satoshi Tsukuda, Masaaki Omichi, Katsuyoshi Takano, and Akira Onoda
- Subjects
Serum albumin ,Nanowire ,General Physics and Astronomy ,Nanotechnology ,General Biochemistry, Genetics and Molecular Biology ,Article ,medicine ,Molecule ,Humans ,Biotinylation ,Trypsin ,Cell adhesion ,Serum Albumin ,Multidisciplinary ,biology ,Chemistry ,Nanowires ,General Chemistry ,Human serum albumin ,Avidin ,Chemical engineering ,biology.protein ,Particle ,medicine.drug - Abstract
Protein nanowires exhibiting specific biological activities hold promise for interacting with living cells and controlling and predicting biological responses such as apoptosis, endocytosis and cell adhesion. Here we report the result of the interaction of a single high-energy charged particle with protein molecules, giving size-controlled protein nanowires with an ultra-high aspect ratio of over 1,000. Degradation of the human serum albumin nanowires was examined using trypsin. The biotinylated human serum albumin nanowires bound avidin, demonstrating the high affinity of the nanowires. Human serum albumin–avidin hybrid nanowires were also fabricated from a solid state mixture and exhibited good mechanical strength in phosphate-buffered saline. The biotinylated human serum albumin nanowires can be transformed into nanowires exhibiting a biological function such as avidin–biotinyl interactions and peroxidase activity. The present technique is a versatile platform for functionalizing the surface of any protein molecule with an extremely large surface area., High-energy particles can be used for precise fabrication of nanostructures by inducing cross-linking between structures. Here the authors use a single particle fabrication technique to assemble protein nanowires, giving structures with high aspect ratios retaining biological functions.
- Published
- 2014
24. H2O2-dependent substrate oxidation by an engineered diiron site in a bacterial hemerythrin
- Author
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Yasunori Okamoto, Yoshitsugu Shiro, Shun Hirota, Akira Onoda, Yu Takano, Takashi Hayashi, Hiroshi Sugimoto, and Donald M. Kurtz
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Stereochemistry ,Iron ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Hemerythrin ,Catalysis ,03 medical and health sciences ,chemistry.chemical_compound ,Residue (chemistry) ,Materials Chemistry ,030304 developmental biology ,0303 health sciences ,Bacteria ,Chemistry ,Metals and Alloys ,Oxidation reduction ,General Chemistry ,Hydrogen Peroxide ,3. Good health ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Ceramics and Composites ,Guaiacol ,Oxidation-Reduction - Abstract
The O2-binding carboxylate-bridged diiron site in DcrH-Hr with an engineered His residue in place of Ile119 promotes the oxidation of guaiacol and 1,4-cyclohexadiene upon addition of H2O2., The O2-binding carboxylate-bridged diiron site in DcrH-Hr was engineered in an effort to perform the H2O2-dependent oxidation of external substrates. A His residue was introduced near the diiron site in place of a conserved residue, Ile119. The I119H variant promotes the oxidation of guaiacol and 1,4-cyclohexadiene upon addition of H2O2.
- Published
- 2014
25. DNA-Binding Hemoproteins Tethering Polyamine Interface
- Author
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Hirokazu Nagai, Satoe Koga, Takashi Hayashi, and Akira Onoda
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chemistry.chemical_compound ,Hemeprotein ,chemistry ,biology ,Tethering ,Stereochemistry ,Side chain ,biology.protein ,Moiety ,General Chemistry ,Polyamine ,DNA ,Cofactor - Abstract
Artificial prosthetic groups tethering a polyamine moiety at the terminal of two peripheral heme–propionate side chains as a molecular interface were inserted into apocytochrome b562 to provide pos...
- Published
- 2010
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26. catena-Poly[[[triaquabis(2,6-diacetamidobenzoato)terbium(III)]-μ-2,6-diacetamidobenzoato] monohydrate]
- Author
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Taka-aki Okamura, Akira Onoda, Hitoshi Yamamoto, and Norikazu Ueyama
- Subjects
Coordination sphere ,Chemistry ,Hydrogen bond ,Ligand ,Stereochemistry ,chemistry.chemical_element ,Terbium ,General Chemistry ,Condensed Matter Physics ,Medicinal chemistry ,Carbonyl group ,Ion ,chemistry.chemical_compound ,Amide ,Intramolecular force ,General Materials Science - Abstract
The title compound, {[Tb(C11H11N2O4)3(H2O)3]·H2O}n, has a Tb ion coordinated by bulky benzoate ligands. The Tb ion coordination sphere is occupied by nine O atoms, five from benzoate groups, three from water molecules and one from an amide carbonyl group of a neighboring ligand. Five amide NH groups of the three ligands are involved in intramolecular N—H⋯O hydrogen bonds.
- Published
- 2004
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27. Back Cover: In Situ Observation of Enhanced Photoinduced Charge Separation in a Gold Nanoparticle Assembly Immobilized on TiO2 (ChemistrySelect 18/2016)
- Author
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Shiho Moriguchi, Akira Onoda, Hirofumi Harada, and Takashi Hayashi
- Subjects
In situ ,chemistry.chemical_compound ,Materials science ,Photoinduced charge separation ,chemistry ,Titanium dioxide ,Nanoparticle ,Nanotechnology ,Cover (algebra) ,General Chemistry - Published
- 2016
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28. Inside Cover: Oxygen-binding Protein Fiber and Microgel: Supramolecular Myoglobin-Poly(acrylate) Conjugates (Chem. Asian J. 7/2016)
- Author
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Koji Oohora, Toshikazu Ono, Takashi Hayashi, Yasushi Hisaoka, and Akira Onoda
- Subjects
Acrylate ,Hemeprotein ,Chemistry ,Organic Chemistry ,Supramolecular chemistry ,General Chemistry ,Biochemistry ,chemistry.chemical_compound ,Myoglobin ,Protein fiber ,Polymer chemistry ,Cover (algebra) ,Oxygen binding ,Conjugate - Published
- 2016
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29. 2,6-Bis(triphenylacetylamino)phenol
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Hitoshi Yamamoto, Norikazu Ueyama, Taka-aki Okamura, and Akira Onoda
- Subjects
chemistry.chemical_compound ,chemistry ,Hydrogen bond ,Stereochemistry ,Amide ,Intramolecular force ,Intermolecular force ,Phenol ,General Materials Science ,General Chemistry ,Condensed Matter Physics ,Medicinal chemistry - Abstract
In the title compound, C46H36N2O3, very bulky triphenylmethyl groups interfere with intermolecular interactions; intramolecular hydrogen bonds N—H⋯O—H⋯O=C between the phenol and two amide groups are observed in the structure.
- Published
- 2003
- Full Text
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30. A distorted square-planar PdIIcomplex with a shortened Pd—Cl bond induced by the bulky terpyridyl ligand 6,6′′-dimesityl-2,2′:6′,2′′-terpyridine
- Author
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Hitoshi Yamamoto, Keiko Kawakita, Norikazu Ueyama, Taka-aki Okamura, and Akira Onoda
- Subjects
Tetrachloropalladium ,Ligand ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Chloride ,Ion ,Crystallography ,chemistry.chemical_compound ,Planar ,chemistry ,Pyridine ,medicine ,General Materials Science ,medicine.drug ,Dichloromethane - Abstract
The title complex, chloro(6,6′′-dimesityl-2,2′:6′,2′′-terpyridine)palladium(II) tetrachloropalladium(II) dichloromethane tetrasolvate, [PdIICl(dmtpy)]2[PdIICl4]·4CH2Cl2 (dmtpy is 6,6′′-dimesityl-2,2′:6′,2′′-terpyridine, C33H31N3), was synthesized and the crystal structure of the dichloromethane tetrasolvate has been determined. The complex has a distorted square-planar coordination formed by three N atoms and a chloride ion, the distortion caused by the extremely bulky substituted terpyridyl ligand.
- Published
- 2003
- Full Text
- View/download PDF
31. Supramolecular assembling systems formed by heme-heme pocket interactions in hemoproteins
- Author
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Takashi Hayashi, Koji Oohora, and Akira Onoda
- Subjects
Hemeproteins ,Models, Molecular ,Hemeprotein ,Stereochemistry ,Protein Conformation ,Supramolecular chemistry ,Context (language use) ,Heme ,Catalysis ,Cofactor ,chemistry.chemical_compound ,Protein Interaction Mapping ,Materials Chemistry ,Moiety ,Animals ,Humans ,Electrodes ,chemistry.chemical_classification ,biology ,Chemistry ,Biomolecule ,Metals and Alloys ,General Chemistry ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Oxygen ,Immobilized Proteins ,Covalent bond ,Ceramics and Composites ,biology.protein ,Nanoparticles ,Protein Multimerization ,Protein Binding - Abstract
A native protein in a biological system spontaneously produces large and elegant assemblies via self-assembly or assembly with various biomolecules which provide non-covalent interactions. In this context, the protein plays a key role in construction of a unique supramolecular structure operating as a functional system. Our group has recently highlighted the structure and function of hemoproteins reconstituted with artificially created heme analogs. The heme molecule is a replaceable cofactor of several hemoproteins. Here, we focus on the successive supramolecular protein assemblies driven by heme–heme pocket interactions to afford various examples of protein fibers, networks and three-dimensional clusters in which an artificial heme moiety is introduced onto the surface of a hemoprotein via covalent linkage and the native heme cofactor is removed from the heme pocket. This strategy is found to be useful for constructing hybrid materials with an electrode or with nanoparticles. The new systems described herein are expected to lead to the generation of various biomaterials with functions and characteristic physicochemical properties similar to those of hemoproteins.
- Published
- 2012
32. Fibrous supramolecular hemoprotein assemblies connected with synthetic heme dimer and apohemoprotein dimer
- Author
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Akinori Takahashi, Akira Onoda, Koji Oohora, Takashi Hayashi, and Yoshitaka Onuma
- Subjects
Hemeproteins ,Models, Molecular ,Hemeprotein ,Dimer ,Supramolecular chemistry ,Bioengineering ,Heme ,Photochemistry ,Microscopy, Atomic Force ,Biochemistry ,chemistry.chemical_compound ,Molecular Biology ,chemistry.chemical_classification ,Myoglobin ,General Chemistry ,General Medicine ,Amino acid ,Crystallography ,chemistry ,Molecular Medicine ,Apoproteins ,Linker ,Dimerization - Abstract
Supramolecular hemoprotein assemblies via heme-heme pocket interaction were prepared by synthetic heme dimers containing a linker with charged amino acids and apohemoprotein disulfide dimers. The mixture of the negatively charged heme dimer and the apomyoglobin dimer provides heterotropic fibrous hemoprotein assemblies, which were characterized by size-exclusion chromatography (SEC) and atomic force microscopy (AFM).
- Published
- 2012
33. A rhodium complex-linked β-barrel protein as a hybrid biocatalyst for phenylacetylene polymerization
- Author
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Kazuki Fukumoto, Marco Bocola, Marcus Arlt, Akira Onoda, Ulrich Schwaneberg, and Takashi Hayashi
- Subjects
Models, Molecular ,chemistry.chemical_element ,Crystallography, X-Ray ,Catalysis ,Rhodium ,Polymerization ,chemistry.chemical_compound ,Polymer chemistry ,Materials Chemistry ,Organometallic Compounds ,Moiety ,Organic chemistry ,Maleimide ,Molecular Structure ,Chemistry ,Ligand ,Acetylene ,Metals and Alloys ,General Chemistry ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Phenylacetylene ,Covalent bond ,Mutation ,Ceramics and Composites ,Biocatalysis ,Mutant Proteins - Abstract
Our group recently prepared a hybrid catalyst containing a rhodium complex, Rh(Cp)(cod), with a maleimide moiety at the peripheral position of the Cp ligand. This compound was then inserted into a β-barrel protein scaffold of a mutant of aponitrobindin (Q96C) via a covalent linkage. The hybrid protein is found to act as a polymerization catalyst and preferentially yields trans-poly(phenylacetylene) (PPA), although the rhodium complex without the protein scaffold normally produces cis PPA.
- Published
- 2012
34. Photochemical properties of a myoglobin-CdTe quantum dot conjugate
- Author
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Shunichi Fukuzumi, Kei Ohkubo, Tomoki Himiyama, Takashi Hayashi, and Akira Onoda
- Subjects
Models, Molecular ,Luminescence ,Heme ,Photochemistry ,Catalysis ,Electron Transport ,chemistry.chemical_compound ,Electron transfer ,Telluride ,Quantum Dots ,Materials Chemistry ,Cadmium Compounds ,Moiety ,Sulfhydryl Compounds ,Carbon Monoxide ,Myoglobin ,Metals and Alloys ,General Chemistry ,Cadmium telluride photovoltaics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry ,Quantum dot ,Ceramics and Composites ,Tellurium ,Oxidation-Reduction ,Conjugate - Abstract
A myoglobin–cadmium telluride quantum dot conjugate was constructed using an artificial heme modified with a thiol moiety as a linker. Irradiation of the myoglobin–cadmium telluride conjugate generated the photoreduced ferrous myoglobin via an electron transfer from the photoexcited quantum dot, leading to the formation of CO-bound myoglobin under a CO atmosphere.
- Published
- 2012
35. Photocurrent generation from hierarchical zinc-substituted hemoprotein assemblies immobilized on a gold electrode
- Author
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Taro Uematsu, Yasuaki Kakikura, Akira Onoda, Takashi Hayashi, and Susumu Kuwabata
- Subjects
Hemeproteins ,Hemeprotein ,Cytochrome ,chemistry.chemical_element ,Protoporphyrins ,Zinc ,Photochemistry ,Catalysis ,chemistry.chemical_compound ,Heme ,Electrodes ,Photocurrent ,biology ,Chemistry ,General Medicine ,General Chemistry ,Cytochromes b ,Photochemical Processes ,Immobilized Proteins ,Covalent bond ,Electrode ,biology.protein ,Quartz Crystal Microbalance Techniques ,Protoporphyrin ,Gold - Abstract
All connected: a protein-immobilized electrode comprising hierarchical assemblies of photoactive cytochrome b(562) reconstituted with zinc protoporphyrin IX exhibits remarkably enhanced photocurrent generation relative to an electrode bearing a single zinc-substituted hemoprotein layer. The protein oligomers, which bear a covalently linked protoporphyrin group, assemble by a supramolecular heme/heme pocket interaction.
- Published
- 2012
36. Chemically programmed supramolecular assembly of hemoprotein and streptavidin with alternating alignment
- Author
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Takashi Hayashi, Yvonne M. Wilson, Akira Onoda, Thomas R. Ward, Sabina Burazerovic, and Koji Oohora
- Subjects
Streptavidin ,Hemeproteins ,Hemeprotein ,Binding Sites ,010405 organic chemistry ,Myoglobin ,Dimer ,Supramolecular chemistry ,Biotin ,General Chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,Catalysis ,3. Good health ,Supramolecular assembly ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Polymer chemistry ,Heme - Abstract
It is shown that an intramolecularly linked cofactor dyad enforces the assocn. of two different proteins according to a predefined program. The present study demonstrates that the heme bis(biotin) conjugate contains the information to produce a stable 2:1 Mb SAv complex. Propagation of this moiety into a polymer results from using a dimericMb building block. The supramol. composite fiber obsd. by AFM techniques is the first example of a chem. programmed heterotropic protein copolymer with alternating alignment. The heme cofactor's dioxygen binding function is maintained upon incorporation within the fiber suggesting that this approach is well suited for the creation of functional nanobiomaterials. Immobilization of the first building block will allow to: (1) study the programmed assembly by quartz microbalance anal. (2) increase the complexity by varying the capping groups on the dyad and/or (3) introduce addnl. protein building blocks to afford protein polymers with a desired sequence and function. Potential applications include multifunctional catalysis artificial photosynthesis and smart nanomaterials for medical applications. [on SciFinder(R)]
- Published
- 2011
37. A hydrogenase model system based on the sequence of cytochrome c: photochemical hydrogen evolution in aqueous media
- Author
-
Yohei Sano, Akira Onoda, and Takashi Hayashi
- Subjects
Iron-Sulfur Proteins ,Models, Molecular ,Hydrogenase ,Light ,Iron ,Sequence (biology) ,Photochemistry ,Catalysis ,Ruthenium ,Coordination Complexes ,Materials Chemistry ,Amino Acid Sequence ,Peptide sequence ,Photosensitizing Agents ,biology ,Aqueous medium ,Chemistry ,Cytochrome c ,Metals and Alloys ,Cytochromes c ,Water ,General Chemistry ,Hydrogen-Ion Concentration ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Reagent ,Ceramics and Composites ,biology.protein ,Ton ,Hydrogen - Abstract
The diiron carbonyl cluster is held by a native CXXC motif, which includes Cys14 and Cys17, in the cytochrome c sequence. It is found that the diiron carbonyl complex works well as a catalyst for H(2) evolution. It has a TON of ∼80 over 2 h at pH 4.7 in the presence of a Ru-photosensitizer and ascorbate as a sacrificial reagent in aqueous media.
- Published
- 2011
38. One-dimensional P–OH...O=P hydrogen bonds restricted by the bulky molecule 2,6-diisopropylphenyl dihydrogen phosphate
- Author
-
Taka-aki Okamura, Akira Onoda, Hitoshi Yamamoto, and Norikazu Ueyama
- Subjects
Chain structure ,Chemistry ,Group (periodic table) ,Hydrogen bond ,Low-barrier hydrogen bond ,Molecule ,General Materials Science ,General Chemistry ,Condensed Matter Physics ,Photochemistry ,Hydrogen phosphate ,Medicinal chemistry - Abstract
The title compound, C12H19OP4, with a bulky group, exhibits one-dimensional hydrogen-bonded chains of bifurcated P—OH⋯O=P interactions. This one-dimensional chain structure with double P—OH⋯O=P hydrogen bonds is induced by the bulky isopropyl groups.
- Published
- 2001
- Full Text
- View/download PDF
39. Porphyrin arrays responsive to additives. Fluorescence tuning
- Author
-
Ichiro Okura, Toshiaki Kamachi, Takeshi Yamamura, Tomotaka Taguchi, Akira Onoda, and Shingo Suzuki
- Subjects
Porphyrins ,Chemistry ,Polymers ,Dimer ,Circular Dichroism ,General Chemistry ,Photochemistry ,Ethylenediamines ,Biochemistry ,Porphyrin ,Fluorescence ,Catalysis ,Absorption ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Monomer ,Tetramer ,Yield (chemistry) ,Histone octamer ,Absorption (electromagnetic radiation) ,Peptides ,Fluorescent Dyes - Abstract
The application of low-flux sunlight begins with the synthesis of effective antenna systems. This requires the development of dye integrates with optimized dye orientation for effective energy transfer. We here report a series of peptide-linked porphyrin arrays, denoted by Boc-(Por(Zn,S))(n)-OBu(t) (n = 2, 4, and 8), that change their dye orientation to increase fluorescence responsively to additive reagents. The B-band absorption (AB) regions of the arrays show blue shifts (dimer, 407.6 nm; tetramer, 408.2 nm; octamer, 407.8 nm) in organic solvents as compared to that of Boc-Por(Zn,S)-OBu(t) (monomer, 422.6 nm) and the fluorescence yield Phi' of the arrays decreases with increasing n, obeying the relationship Phi' = 0.03/n(1.5); however, the arrays are tuned up in fluorescence emission by the addition of 1,2-diaminoethane (en). The addition of a sufficient amount of en increases the fluorescence of the porphyrins in monomer, dimer, tetramer, and octamer by approximately 5, approximately 12, approximately 12, and730 times, respectively, when compared with that observed in the absence of en. This also causes asymptotic red shifts in absorption (AB) bands (B-band lambda(max): 410 to 429-430 nm), as well as changes in circular dichroism (CD) spectra, and makes porphyrins approach new mutual asymmetric orientations. Our results show the potentiality of the tunable dye polymers that are a posteriori optimized in dye orientation and fluorescence emission by additive reagents for the development of effective light-harvesting materials.
- Published
- 2009
40. Synthesis of zigzag-chain and cyclic-octanuclear calcium complexes and hexanuclear bulky aryl-phosphate sodium complexes with ortho-amide groups: structural transformation involving a network of inter- and intramolecular hydrogen bonds
- Author
-
Mototsugu Doi, Hitoshi Yamamoto, Yusuke Yamada, Norikazu Ueyama, Taka-aki Okamura, and Akira Onoda
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,Spectrophotometry, Infrared ,Stereochemistry ,Crystal structure ,Crystallography, X-Ray ,Biochemistry ,Medicinal chemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Amide ,Molecule ,Polycyclic Aromatic Hydrocarbons ,Molecular Structure ,Hydrogen bond ,Ligand ,Aryl ,Hydrogen Bonding ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Amides ,Organophosphates ,chemistry ,Intramolecular force ,Calcium - Abstract
Three new polynuclear Ca(II)- and Na(I) phosphate complexes with two strategically oriented bulky amide groups, 2,6-(PhCONH)(2)C(6)H(3)OPO(3)H(2), were synthesized, including one with a zigzag-chain, [Ca(II)[O(3)POC(6)H(3)-2,6-(NHCOPh)(2)](H(2)O)(4)(EtOH)](n), a cyclic-octanuclear form, [Ca(II)(8)[O(3)POC(6)H(3)-2,6-(NHCOPh)(2)](8)(O=CHNMe(2))(8)(H(2)O)(12)], and a hexanuclear complex, (NHEt(3))[Na(3)[O(3)POC(6)H(3)-2,6-(NHCOPh)(2)](2)(H(2)O)(MeOH)(7)]. X-ray crystallography revealed that all have an unsymmetric ligand position due to the bulky amide groups. A dynamic transformation of the Ca(II) zigzag-chain structure to the cyclic-octanuclear complex was induced by changing coordination of DMF molecules, which caused a reorganization of the intermolecular/intramolecular hydrogen bond network.
- Published
- 2002
41. Covalent Immobilization of Metal-binding Motifs of Enzymes on Quartz Surface. [Ni(Cys-X2-Cys)2]2−of Hydrogenases
- Author
-
Akira Onoda, Takahiro Ohe, Hideaki Monjushiro, Takashi Misumi, Daisuke Sakaniwa, and Takeshi Yamamura
- Subjects
inorganic chemicals ,chemistry.chemical_classification ,Hydrogenase ,Metal binding ,General Chemistry ,chemistry.chemical_compound ,Enzyme ,chemistry ,Covalent bond ,Polymer chemistry ,Triethoxysilane ,Organic chemistry ,Quartz ,Peptide ligand - Abstract
The peptide ligand, Cys-Pro-Leu-Cys, was covalently immobilized on the surface of quartz via (3-aminopropyl) triethoxysilane (APTES) by the general peptide-synthesis method; then, Ni2+ was introduc...
- Published
- 2005
- Full Text
- View/download PDF
42. Solid State31P MAS NMR Detection of Hydrogen-bonded Phosphate Polymer in Calcium–Phosphate Composites
- Author
-
Taka-aki Okamura, Mototsugu Doi, Akira Onoda, Hitoshi Yamamoto, Kazuyuki Takahashi, and Norikazu Ueyama
- Subjects
chemistry.chemical_classification ,Hydrogen ,Hydrogen bond ,Ligand ,chemistry.chemical_element ,General Chemistry ,Polymer ,Calcium ,engineering.material ,Phosphate ,chemistry.chemical_compound ,chemistry ,engineering ,Brushite ,Biopolymer ,Composite material - Abstract
A novel poly(vinyl phosphate) ligand was synthesized as a model of biopolymer ligands containing the OH···O hydrogen bonds and CaHPO4·2H2O (brushite) composites with the polymer ligands were also p...
- Published
- 2004
- Full Text
- View/download PDF
43. Direct Observation of Polymer-Binding Site on Calcite Crystal by FE/SEM: Regulation of Binding Abilities by a Rotation of Amide Group in Poly(carboxylate) to CaCO3Crystals
- Author
-
Kazuyuki Takahashi, Norikazu Ueyama, Takahisa Taguchi, Hitoshi Yamamoto, Mototsugu Doi, Taka-aki Okamura, Atsuko Kobayashi, and Akira Onoda
- Subjects
chemistry.chemical_classification ,Crystal ,Calcite ,Crystallography ,chemistry.chemical_compound ,Ethylene ,chemistry ,Group (periodic table) ,Amide ,General Chemistry ,Polymer ,Carboxylate ,Binding site - Abstract
Poly{1-[(Z)-3-carboxyl-2-propenylaminomethyl]ethylene} binding on the edge of calcite crystals was observed directly by 13C CP/MAS NMR and FE/SEM measurements. Comparing the results taken both befo...
- Published
- 2004
- Full Text
- View/download PDF
44. Highly oriented aragonite nanocrystal–biopolymer composites in an aragonite brick of the nacreous layer of Pinctada fucata
- Author
-
Kazuyuki Takahashi, Atsuko Kobayashi, Norikazu Ueyama, Masahiko Chiba, Takashi Inaba, Hitoshi Yamamoto, Mototsugu Doi, Taka-aki Okamura, Akira Onoda, and Takahisa Taguchi
- Subjects
Brick ,Materials science ,biology ,Aragonite ,Metals and Alloys ,General Chemistry ,engineering.material ,biology.organism_classification ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Nanocrystal ,Materials Chemistry ,Ceramics and Composites ,engineering ,Pinctada fucata ,Biopolymer ,Composite material ,Layer (electronics) - Abstract
13C CP/MAS NMR and FE/TEM measurements of the aragonite brick of the nacreous layer of Pinctada fucata indicate that it assembles with highly oriented aragonite nanocrystals, which are regulated by biopolymers.
- Published
- 2004
- Full Text
- View/download PDF
45. (Acetonitrile)(6,6′′-dimesityl-2,2′:6′,2′′-terpyridine)copper(I) hexafluorophosphate
- Author
-
Keiko Kawakita, Taka-aki Okamura, Akira Onoda, Hitoshi Yamamoto, and Norikazu Ueyama
- Subjects
Nitrile ,Stereochemistry ,Ligand ,chemistry.chemical_element ,General Chemistry ,Condensed Matter Physics ,HEXA ,Phosphate ,Medicinal chemistry ,Copper ,chemistry.chemical_compound ,chemistry ,Pyridine ,General Materials Science - Abstract
The title compound, [CuI(dmtpy)(NCMe)](PF6) (dmtpy = 6,6′′-dimesityl-2,2′:6′,2′′-terpyridine) or [Cu(C2H3N)(C33H31N3)](PF6), displays a distorted square-planar coordination, with four N atoms from dmtpy and acetonitrile molecules, as a result of the extremely bulky terpyridyl ligand.
- Published
- 2003
- Full Text
- View/download PDF
46. Cover Picture: Chemically Programmed Supramolecular Assembly of Hemoprotein and Streptavidin with Alternating Alignment (Angew. Chem. Int. Ed. 16/2012)
- Author
-
Thomas R. Ward, Akira Onoda, Koji Oohora, Sabina Burazerovic, Takashi Hayashi, and Yvonne M. Wilson
- Subjects
Streptavidin ,chemistry.chemical_compound ,Hemeprotein ,chemistry ,Polymer chemistry ,Supramolecular chemistry ,Cover (algebra) ,General Chemistry ,Catalysis ,Supramolecular assembly - Published
- 2012
- Full Text
- View/download PDF
47. A chemically-controlled supramolecular protein polymer formed by a myoglobin-based self-assembly system
- Author
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Koji Oohora, Akira Onoda, Takashi Hayashi, Akira Harada, Hiroaki Kitagishi, and Hiroyasu Yamaguchi
- Subjects
chemistry.chemical_classification ,Hemeprotein ,Oxygen storage ,Supramolecular chemistry ,General Chemistry ,Supramolecular assembly ,Supramolecular polymers ,chemistry.chemical_compound ,Monomer ,chemistry ,Myoglobin ,Chemical engineering ,Polymer chemistry ,Heme - Abstract
Artificial self-assembling systems comprised of proteins have the potential not only for mimicking naturally occurring protein clusters but also for creating functionalized supramolecular polymers. Here we report a new type of a supramolecular protein polymer which utilizes the original character and reactivity of the monomer protein. Myoglobin, an oxygen storage hemoprotein, was chosen as the monomer unit and was provided with an externally-attached heme on the protein surface which drives the formation of the fibrous supramolecular assembly through successive interprotein interactions between the external heme and the protein matrix. This assembly governed by myoglobin characteristics shows chemically-responsive stability and can be converted into extremely large protein clustersvia cross-linking. Interestingly, the assembly retains the oxygen storage function. Our present system can be used for construction of smart nanobiomaterials using various hemoproteins.
- Published
- 2011
- Full Text
- View/download PDF
48. Supramolecular hemoprotein–gold nanoparticle conjugates
- Author
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Takashi Hayashi, Taiki Sakamoto, Akira Onoda, Taro Uematsu, and Yuichi Ueya
- Subjects
Hemeproteins ,Hemeprotein ,Surface Properties ,Dimer ,Supramolecular chemistry ,Metal Nanoparticles ,Nanoparticle ,Nanotechnology ,Heme ,macromolecular substances ,Microscopy, Atomic Force ,Catalysis ,chemistry.chemical_compound ,Materials Chemistry ,Moiety ,technology, industry, and agriculture ,Metals and Alloys ,General Chemistry ,Combinatorial chemistry ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Microscopy, Electron ,chemistry ,Covalent bond ,Ceramics and Composites ,Gold ,Apoproteins ,Dimerization ,Conjugate - Abstract
Interaction of apohemoprotein with a covalently immobilized heme moiety onto a gold nanoparticle surface resulted in supramolecular hemoprotein-gold nanoparticle conjugates. The addition of an apohemoprotein dimer further led to a densely-packed hemoprotein-gold nanoparticle assembly, which was visualized by TEM and AFM measurements.
- Published
- 2010
- Full Text
- View/download PDF
49. Zigzag-chain, cyclic-octanuclear calcium-and hexanuclear sodium phosphate complexes with bulky amide ligands involving a network of inter- and intramolecular hydrogen bonds
- Author
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Hitoshi Yamamoto, Norikazu Ueyama, Taka-aki Okamura, and Akira Onoda
- Subjects
Hydrogen bond ,medicine.drug_class ,Ligand ,Stereochemistry ,Aryl ,Intermolecular force ,Carboxamide ,General Chemistry ,Condensed Matter Physics ,chemistry.chemical_compound ,chemistry ,Intramolecular force ,Amide ,Polymer chemistry ,medicine ,Molecule ,General Materials Science - Abstract
Novel zigzag-chain, cyclic-octanuclear Ca- and hexanuclear Na-phosphate complexes were synthesized using bulky amide aryl dihydrogen phosphate ligands. The metal complexes with bulky amides have a unique unsymmetric ligand position. The zigzag-chain structure transformed into a cyclic-octanuclear one in cooperating with the coordination of DMF molecule and reorganization of the intermolecular/intramolecular hydrogen bond networks. biomineral calcium phosphate complex NH···O hydrogen bonds polynuclear complex structural transformation
Catalog
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