134 results on '"Robert. J. Capon"'
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2. Noonindoles G–L: Indole Diterpene Glycosides from the Australian Marine-Derived Fungus Aspergillus noonimiae CMB-M0339
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Sarani Kankanamge, Zeinab G. Khalil, Thulasi Sritharan, and Robert J. Capon
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Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2023
3. Glenthmycins A–M: Macrocyclic Spirotetronate Polyketide Antibacterials from the Australian Pasture Plant-Derived Streptomyces sp. CMB-PB041
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Taizong Wu, Angela A. Salim, Zeinab G. Khalil, Paul V. Bernhardt, and Robert J. Capon
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Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2022
4. Glenthenamines A–F: Enamine Pyranonaphthoquinones from the Australian Pasture Plant Derived Streptomyces sp. CMB-PB042
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Taizong Wu, Angela A. Salim, Hui Cui, Zeinab G. Khalil, Paul V. Bernhardt, and Robert J. Capon
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Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2022
5. The Development of Surface-Modified Liposomes as an Intranasal Delivery System for Group A Streptococcus Vaccines
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Jieru Yang, Jennifer C. Boer, Mattaka Khongkow, Sarunya Phunpee, Zeinab G. Khalil, Sahra Bashiri, Cyril Deceneux, Georgia Goodchild, Waleed M. Hussein, Robert J. Capon, Uracha Ruktanonchai, Magdalena Plebanski, Istvan Toth, and Mariusz Skwarczynski
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Pharmacology ,Infectious Diseases ,adjuvant ,group A Streptococcus ,Drug Discovery ,Immunology ,intranasal vaccine ,Pharmacology (medical) ,multilamellar liposome ,oleoyl-quaternized chitosan ,cell-penetrating peptide - Abstract
Intranasal vaccine administration can overcome the disadvantages of injectable vaccines and present greater efficiency for mass immunization. However, the development of intranasal vaccines is challenged by poor mucosal immunogenicity of antigens and the limited availability of mucosal adjuvants. Here, we examined a number of self-adjuvanting liposomal systems for intranasal delivery of lipopeptide vaccine against group A Streptococcus (GAS). Among them, two liposome formulations bearing lipidated cell-penetrating peptide KALA and a new lipidated chitosan derivative (oleoyl-quaternized chitosan, OTMC) stimulated high systemic antibody titers in outbred mice. The antibodies were fully functional and were able to kill GAS bacteria. Importantly, OTMC was far more effective at stimulating antibody production than the classical immune-stimulating trimethyl chitosan formulation. In a simple physical mixture, OTMC also enhanced the immune responses of the tested vaccine, without the need for a liposome delivery system. The adjuvanting capacity of OTMC was further confirmed by its ability to stimulate cytokine production by dendritic cells. Thus, we discovered a new immune stimulant with promising properties for mucosal vaccine development.
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- 2023
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6. Poly(hydrophobic Amino Acids) and Liposomes for Delivery of Vaccine against Group A Streptococcus
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Armira Azuar, Harrison Y. R. Madge, Jennifer C. Boer, Jazmina L. Gonzalez Cruz, Jingwen Wang, Zeinab G. Khalil, Cyril Deceneux, Georgia Goodchild, Jieru Yang, Prashamsa Koirala, Waleed M. Hussein, Robert J. Capon, Magdalena Plebanski, Istvan Toth, and Mariusz Skwarczynski
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Pharmacology ,peptide-based vaccine ,adjuvant ,poly(hydrophobic amino acid) ,liposome ,Group A Streptococcus ,chain-like nanoparticles ,Infectious Diseases ,Drug Discovery ,Immunology ,Pharmacology (medical) - Abstract
Adjuvants and delivery systems are essential components of vaccines to increase immunogenicity against target antigens, particularly for peptide epitopes (poor immunogens). Emulsions, nanoparticles, and liposomes are commonly used as a delivery system for peptide-based vaccines. A Poly(hydrophobic amino acids) delivery system was previously conjugated to Group A Streptococcus (GAS)-derived peptide epitopes, allowing the conjugates to self-assemble into nanoparticles with self adjuvanting ability. Their hydrophobic amino acid tail also serves as an anchoring moiety for the peptide epitope, enabling it to be integrated into the liposome bilayer, to further boost the immunological responses. Polyleucine-based conjugates were anchored to cationic liposomes using the film hydration method and administered to mice subcutaneously. The polyleucine-peptide conjugate, its liposomal formulation, and simple liposomal encapsulation of GAS peptide epitope induced mucosal (saliva IgG) and systemic (serum IgG, IgG1 and IgG2c) immunity in mice. Polyleucine acted as a potent liposome anchoring portion, which stimulated the production of highly opsonic antibodies. The absence of polyleucine in the liposomal formulation (encapsulated GAS peptide) induced high levels of antibody titers, but with poor opsonic ability against GAS bacteria. However, the liposomal formulation of the conjugated vaccine was no more effective than conjugates alone self-assembled into nanoparticles.
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- 2022
7. Neobulgarones Revisited: Anti and Syn Bianthrones from an Australian Mud Dauber Wasp Nest-Associated Fungus, Penicillium sp. CMB-MD22
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Zeinab G. Khalil, Paul V. Bernhardt, Robert J. Capon, and Ahmed H. Elbanna
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Pharmacology ,Antifungal ,biology ,010405 organic chemistry ,medicine.drug_class ,Chemistry ,Stereochemistry ,Organic Chemistry ,Pharmaceutical Science ,Fungus ,biology.organism_classification ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Mud dauber ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,Drug Discovery ,Penicillium ,Molecular networking ,medicine ,Thermal equilibration ,Molecular Medicine ,Chemical defense ,Nest (protein structural motif) - Abstract
We report on the chemical analysis of a mud dauber wasp nest-associated fungus, Penicillium sp. CMB-MD22, leading to the discovery and structure elucidation of three known (1-3) and two new (4 and 5) anthrones, and a family of new and known bianthrones, neobulgarones 6-23. Detection and structure elucidation of 1-23 was supported by detailed spectroscopic analysis, as well as chemical (thermal) transformations, and global natural products social (GNPS) molecular networking. An empirical approach using HPLC retention times was effective at differentiating anti from syn bianthrone isomers, while a facile thermal equilibration was shown to favor anti over syn isomers. The neobulgarones 6-23 are natural products, and a crude extract rich in 6-23 exhibits selective antifungal activity against a co-isolated mud dauber wasp nest-associated fungus, suggestive of a possible ecological role as an antifungal chemical defense.
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- 2021
8. Poly(hydrophobic amino acid)-Based Self-Adjuvanting Nanoparticles for Group A Streptococcus Vaccine Delivery
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Mariusz Skwarczynski, Istvan Toth, Zhuoqing Li, Zeinab G. Khalil, Yacheng Luo, Waleed M. Hussein, Ahmed O. Shalash, Robert J. Capon, Armira Azuar, Mohini A Shibu, and Lili Zhao
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chemistry.chemical_classification ,0303 health sciences ,Streptococcus vaccine ,biology ,Chemistry ,medicine.medical_treatment ,Immunogenicity ,Peptide ,01 natural sciences ,0104 chemical sciences ,Amino acid ,010404 medicinal & biomolecular chemistry ,03 medical and health sciences ,Immune system ,Antigen ,Biochemistry ,Drug Discovery ,medicine ,biology.protein ,Molecular Medicine ,Antibody ,Adjuvant ,030304 developmental biology - Abstract
Peptide antigens have been widely used in the development of vaccines, especially for those against autoimmunity-inducing pathogens and cancers. However, peptide-based vaccines require adjuvant and/or a delivery system to stimulate desired immune responses. Here, we explored the potential of self-adjuvanting poly(hydrophobic amino acids) (pHAAs) to deliver peptide-based vaccine against Group A Streptococcus (GAS). We designed and synthesized self-assembled nanoparticles with a variety of conjugates bearing a peptide antigen (J8-PADRE) and polymerized hydrophobic amino acids to evaluate the effects of structural arrangement and pHAAs properties on a system's ability to induce humoral immune responses. Immunogenicity of the developed conjugates was also compared to commercially available human adjuvants. We found that a linear conjugate bearing J8-PADRE and 15 copies of leucine induced equally effective, or greater, immune responses than commercial adjuvants. Our fully defined, adjuvant-free, single molecule-based vaccine induced the production of antibodies capable of killing GAS bacteria.
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- 2021
9. Amaurones A–K: Polyketides from the Fish Gut-Derived Fungus Amauroascus sp. CMB-F713
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Paul V. Bernhardt, Taizong Wu, Angela A. Salim, and Robert J. Capon
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Pharmacology ,Partial hydrolysis ,biology ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Organic Chemistry ,Pharmaceutical Science ,Fungus ,biology.organism_classification ,01 natural sciences ,Mullet ,0104 chemical sciences ,Analytical Chemistry ,010404 medicinal & biomolecular chemistry ,Polyketide ,chemistry.chemical_compound ,Complementary and alternative medicine ,Amauroascus ,Intramolecular force ,Drug Discovery ,Molecular Medicine ,%22">Fish ,Triol - Abstract
Using a molecular networking guided strategy, chemical analysis of the Australian mullet fish gastrointestinal tract-derived fungus Amauroascus sp. CMB-F713 yielded a family of polyketide pyrones, amaurones A-I (1-9), featuring an unprecedented carbon skeleton. Structures were assigned to 1-9 by detailed spectroscopic analysis (including X-ray analysis of 1), biosynthetic considerations, and chemical interconversions. For example, the orthoacetate 5 was unstable when stored dry at room temperature, transforming to the monoacetates 2 and 3, while mild heating (40 °C) prompted quantitative conversion of 3 to 2, via an intramolecular trans-acetylation. Likewise, during handling, the monoacetate 1 was prone to intramolecular trans-acetylation, leading to an equilibrium mixture with the isomeric monoacetate amaurone J (10), confirmed when partial hydrolysis of the diacetate 2 yielded the monoacetates 1 and 10 and the triol amaurone K (11).
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- 2021
10. Levoglucosenone and Its Pseudoenantiomer iso-Levoglucosenone as Scaffolds for Drug Discovery and Development
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Michael G. Gardiner, Martin G. Banwell, Paul D. Carr, Xin Liu, Ahmed H. Elbanna, Robert J. Capon, and Zeinab G. Khalil
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Chemistry ,Drug discovery ,General Chemical Engineering ,Product (mathematics) ,General Chemistry ,Combinatorial chemistry ,QD1-999 ,Article - Abstract
The bioderived platform molecule levoglucosenone (LGO, 1) and its readily prepared pseudoenantiomer (iso-LGO, 2) have each been subjected to α-iodination reactions with the product halides then being engaged in palladium-catalyzed Ullmann cross-coupling reactions with various bromonitropyridines. The corresponding α-pyridinylated derivatives such as 11 and 24, respectively, are produced as a result. Biological screening of such products reveals that certain of them display potent and selective antimicrobial and/or cytotoxic properties. In contrast, the azaindoles obtained by reductive cyclization of compounds such as 11 and 12 are essentially inactive in these respects. Preliminary mode-of-action studies are reported.
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- 2020
11. Dysidealactams and Dysidealactones: Sesquiterpene Glycinyl-Lactams, Imides, and Lactones from a Dysidea sp. Marine Sponge Collected in Southern Australia
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Angela A. Salim, Ahmed H. Elbanna, Laizuman Nahar, Robert J. Capon, Paul V. Bernhardt, and Shamsunnahar Khushi
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Pharmacology ,Marine sponges ,010405 organic chemistry ,Organic Chemistry ,Pharmaceutical Science ,Biology ,biology.organism_classification ,Sesquiterpene ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,010404 medicinal & biomolecular chemistry ,Sponge ,chemistry.chemical_compound ,Complementary and alternative medicine ,chemistry ,Drug Discovery ,Molecular networking ,Botany ,Molecular Medicine - Abstract
A GNPS molecular networking approach mapped a library of 960 southern Australian marine sponges and prioritized Dysidea sp. (CMB-01171) for chemical investigation. Although the published natural pr...
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- 2020
12. Chrysosporazines F–M: P-Glycoprotein Inhibitory Phenylpropanoid Piperazines from an Australian Marine Fish Derived Fungus, Chrysosporium sp. CMB-F294
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Zeinab G. Khalil, Robert J. Capon, Paul V. Bernhardt, Osama G. Mohamed, Ahmed H. Elbanna, and Angela A. Salim
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Pharmacology ,biology ,Phenylpropanoid ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Absolute configuration ,Pharmaceutical Science ,ATP-binding cassette transporter ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Multiple drug resistance ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,Complementary and alternative medicine ,chemistry ,Drug Discovery ,biology.protein ,Molecular Medicine ,Structure–activity relationship ,Efflux ,Acetamide ,P-glycoprotein - Abstract
Chemical analysis of the fungus Chrysosporium sp. CMB-F294 isolated from the gastrointestinal tract of a market-purchased specimen of Mugil mullet yielded eight new alkaloids, belonging to a rare class of phenylpropanoid piperazines. Chrysosporazines F–M (1–8) occur as an equilibrium mixture of acetamide rotamers and feature unprecedented carbocyclic and heterocyclic scaffolds. Structures inclusive of absolute configuration were assigned by detailed spectroscopic analysis, supported by biosynthetic considerations. Structure–activity relationship studies determined that selected chrysosporazines were promising noncytotoxic inhibitors of the multidrug resistance efflux pump P-glycoprotein (P-gp), capable of reversing doxorubicin resistance in P-gp-overexpressing human colon carcinoma cells (SW620 Ad300). Chrysosporazine F (1) was particularly noteworthy, with a 2.5 μM cotreatment inducing a doxorubicin gain in sensitivity (GS 14) > 2-fold that of the positive control verapamil (GS 6.1).
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- 2020
13. Neochrysosporazines: Precursor-Directed Biosynthesis Defines a Marine-Derived Fungal Natural Product P-Glycoprotein Inhibitory Pharmacophore
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Amila Agampodi Dewa, Ahmed H. Elbanna, Zeinab G. Khalil, and Robert J. Capon
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Molecular Structure ,Antineoplastic Agents ,Piperazines ,Chrysosporium ,Structure-Activity Relationship ,Doxorubicin ,Drug Resistance, Neoplasm ,Cell Line, Tumor ,Drug Discovery ,Molecular Medicine ,Humans ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,Benzodioxoles ,Drug Screening Assays, Antitumor - Abstract
Upregulation of ATP binding cassette (ABC) transporter efflux pumps (
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- 2022
14. Natural Enantiomers: Occurrence, Biogenesis and Biological Properties
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Jin-Hai Yu, Zhi-Pu Yu, Robert J. Capon, and Hua Zhang
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Biological Products ,Molecular Structure ,Organic Chemistry ,Phytochemicals ,Fungi ,Pharmaceutical Science ,Analytical Chemistry ,Biosynthetic Pathways ,Structure-Activity Relationship ,Drug Development ,Prokaryotic Cells ,Chemistry (miscellaneous) ,Drug Discovery ,Molecular Medicine ,Animals ,Humans ,Physical and Theoretical Chemistry - Abstract
The knowledge that natural products (NPs) are potent and selective modulators of important biomacromolecules (e.g., DNA and proteins) has inspired some of the world’s most successful pharmaceuticals and agrochemicals. Notwithstanding these successes and despite a growing number of reports on naturally occurring pairs of enantiomers, this area of NP science still remains largely unexplored, consistent with the adage “If you don’t seek, you don’t find”. Statistically, a rapidly growing number of enantiomeric NPs have been reported in the last several years. The current review provides a comprehensive overview of recent records on natural enantiomers, with the aim of advancing awareness and providing a better understanding of the chemical diversity and biogenetic context, as well as the biological properties and therapeutic (drug discovery) potential, of enantiomeric NPs.
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- 2022
15. Molecular Networking and Cultivation Profiling Reveals Diverse Natural Product Classes from an Australian Soil-Derived Fungus Aspergillus sp. CMB-MRF324
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Taizong Wu, Angela A. Salim, Paul V. Bernhardt, and Robert J. Capon
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Chemistry (miscellaneous) ,Organic Chemistry ,Drug Discovery ,Molecular Medicine ,Pharmaceutical Science ,Physical and Theoretical Chemistry ,Aspergillus ,Australian soil-derived fungus ,aspergillamide ,asterriquinone ,aflaquinolone ,aspulvin ,aspulvinone ,GNPS molecular networking ,MATRIX cultivation ,Analytical Chemistry - Abstract
This study showcases the application of an integrated workflow of molecular networking chemical profiling (GNPS), together with miniaturized microbioreactor cultivation profiling (MATRIX) to successfully detect, dereplicate, prioritize, optimize the production, isolate, characterize, and identify a diverse selection of new chemically labile natural products from the Queensland sheep pasture soil-derived fungus Aspergillus sp. CMB-MRF324. More specifically, we report the new tryptamine enamino tripeptide aspergillamides E–F (7–8), dihydroquinoline-2-one aflaquinolones H–I (11–12), and prenylated phenylbutyrolactone aspulvinone Y (14), along with an array of known co-metabolites, including asterriquinones SU5228 (9) and CT5 (10), terrecyclic acid A (13), and aspulvinones N-CR (15), B (16), D (17), and H (18). Structure elucidation was achieved by a combination of detailed spectroscopic and chemical analysis, biosynthetic considerations, and in the case of 11, an X-ray crystallographic analysis.
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- 2022
16. Oxandrastins: Antibacterial Meroterpenes from an Australian Mud Dauber Wasp Nest-Associated Fungus, Penicillium sp. CMB-MD14
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Zeinab G. Khalil, Ahmed H. Elbanna, and Robert J. Capon
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food.ingredient ,Stereochemistry ,Metabolite ,meroterpenoids ,Ethyl acetate ,Pharmaceutical Science ,Organic chemistry ,Fungus ,wasp nest-associated fungi ,Penicillium sp. CMB-MD14 ,antibacterial ,vancomycin-resistant enterococci ,bioassay guided investigation ,oxandrastins ,austalides ,Analytical Chemistry ,chemistry.chemical_compound ,food ,QD241-441 ,Drug Discovery ,Bioassay ,Agar ,Physical and Theoretical Chemistry ,Meroterpene ,biology ,Chemistry ,biology.organism_classification ,Chemistry (miscellaneous) ,Penicillium ,Molecular Medicine ,Antibacterial activity - Abstract
The ethyl acetate extract of an ISP-2 agar cultivation of the wasp nest-associated fungus Penicillium sp. CMB-MD14 exhibited promising antibacterial activity against vancomycin-resistant enterococci (VRE), with a bioassay guided chemical investigation yielding the new meroterpene, oxandrastin A (1), the first andrastin-like metabolite with an extra oxygenation at C-2. A culture media optimisation strategy informed a scaled-up rice cultivation that yielded 1, together with three new oxandrastins B–D (2–4), two known andrastins C (5) and F (6), and a new meroterpene of the austalide family, isoaustalide F (7). Structures of 1–7 were assigned based on detailed spectroscopic analysis and chemical interconversion. A GNPS molecular networking analysis of the rice cultivation extract detected the known austalides B (8), H (9), and H acid (10), tentatively identified based on molecular formulae and co-clustering with 7. That the anti-VRE properties of the CMB-MD14 extract were exclusively attributed to 1 (IC50 6.0 µM, MIC99 13.9 µM), highlights the importance of the 2-OAc and 3-OAc moieties to the oxandrastin anti-VRE pharmacophore.
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- 2021
17. Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339
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Sarani Kankanamge, Zeinab G. Khalil, Paul V. Bernhardt, and Robert J. Capon
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indole diterpene ,noonindole ,marine-derived fungus ,Aspergillus noonimiae ,antifungal ,Australia ,microbial biodiscovery ,molecular network chemical profiling ,MATRIX cultivation profiling ,Drug Discovery ,Pharmaceutical Science ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) - Abstract
Analytical scale chemical/cultivation profiling prioritized the Australian marine-derived fungus Aspergillus noonimiae CMB-M0339. Subsequent investigation permitted isolation of noonindoles A–F (5–10) and detection of eight minor analogues (i–viii) as new examples of a rare class of indole diterpene (IDT) amino acid conjugate, indicative of an acyl amino acid transferase capable of incorporating a diverse range of amino acid residues. Structures for 5–10 were assigned by detailed spectroscopic and X-ray crystallographic analysis. The metabolites 5–14 exhibited no antibacterial properties against G-ve and G+ve bacteria or the fungus Candida albicans, with the exception of 5 which exhibited moderate antifungal activity.
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- 2022
18. Precursor-Directed Biosynthesis Mediated Amplification of Minor Aza Phenylpropanoid Piperazines in an Australian Marine Fish-Gut-Derived Fungus, Chrysosporium sp. CMB-F214
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Amila Agampodi Dewa, Robert J. Capon, Ahmed H. Elbanna, and Zeinab G. Khalil
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food.ingredient ,QH301-705.5 ,Sodium ,Pharmaceutical Science ,chemistry.chemical_element ,Fungus ,chrysosporazines ,P-glycoprotein inhibition ,Agar plate ,chemistry.chemical_compound ,food ,Biosynthesis ,multidrug resistance ,Drug Discovery ,phenylpropanoid piperazines ,Agar ,Biology (General) ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,marine fish-gut-derived fungus ,Natural product ,Phenylpropanoid ,biology ,spirochrysosporazine ,biology.organism_classification ,Multiple drug resistance ,Biochemistry ,chemistry ,Chrysosporium sp ,precursor-directed biosynthesis ,azachrysosporazines - Abstract
Chemical analysis of an M1 agar plate cultivation of a marine fish-gut-derived fungus, Chrysosporium sp. CMB-F214, revealed the known chrysosporazines A–D (11–14) in addition to a suite of very minor aza analogues 1–6. A microbioreactor (MATRIX) cultivation profiling analysis failed to deliver cultivation conditions that significantly improved the yields of 1–6, however, it did reveal that M2 agar cultivation produced the new natural product 15. A precursor-directed biosynthesis strategy adopting supplementation of a CMB-F214 M1 solid agar culture with sodium nicotinate enhanced production of otherwise inaccessible azachrysposorazines A1 (1), A2 (2), B1 (3), C1 (4), C2 (5) and D1 (6), in addition to four new chrysosporazines, chrysosporazines N–P (7–9) and spirochrysosporazine A (10). Structures inclusive of absolute configurations were assigned to 1–15 based on detailed spectroscopic and chemical analyses, and biosynthetic considerations. Non-cytotoxic to human carcinoma cells, azachrysosporazies 1–5 were capable of reversing doxorubicin resistance in P-glycoprotein (P-gp)-overexpressing human colon carcinoma cells (SW620 Ad300), with optimum activity exhibited by the C-2′ substituted analogues 3–5.
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- 2021
- Full Text
- View/download PDF
19. Trivirensols: Selectively Bacteriostatic Sesquiterpene Trimers from the Australian Termite Nest-Derived Fungus Trichoderma virens CMB-TN16
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Zeinab G. Khalil, Angela A. Salim, Robert J. Capon, Pradeep Dewapriya, Hou-Wen Lin, Wei-Hua Jiao, and Mark S. Butler
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Pharmacology ,biology ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Pharmaceutical Science ,Fungus ,biology.organism_classification ,Sesquiterpene ,01 natural sciences ,Enterococcus faecalis ,0104 chemical sciences ,Analytical Chemistry ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,Complementary and alternative medicine ,chemistry ,Biotransformation ,Drug Discovery ,Molecular Medicine ,Structure–activity relationship ,Cytotoxicity ,Nest (protein structural motif) ,Butenolide - Abstract
The termite nest-derived fungus Trichoderma virens CMB-TN16 cultivated on rice-based media produced seven new first-in-class trimeric sesquiterpenes, trivirensols A-G (11-17). Structures inclusive of absolute configurations were assigned by detailed spectroscopic analysis and biosynthetic considerations. Although trivirensols exhibit no cytotoxicity to mammalian carcinoma cells, selected examples are bacteriostatic against vancomycin-resistant Enterococcus faecalis (VRE). Structure-activity relationship (SAR) investigations combined with in situ chemical stability studies documented bacteriostatic activity for trivirensols A (11) and B (12) and the co-metabolite divirensols A (4), B (5), and G (10), all of which share a common terminal butenolide. Significantly, SAR studies also revealed bacteriostatic activity for trivirensols C (13) and G (17) and the co-metabolite divirensol C (6), all of which share a common hydrated butenolide terminal. Of note, when exposed to VRE cell cultures, the hydrated butenolides 6, 13, and 17 undergo rapid in situ dehydration to corresponding butenolides, suggesting hydrated butenolides are a pro-drug form of the butenolide VRE bacteriostatic pharmacophore.
- Published
- 2019
20. Cinerols, Nitrogenous Meroterpenoids from the Marine Sponge Dysidea cinerea
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Hou-Wen Lin, Meng-Meng Zhang, Wei-Hua Jiao, Jing-Ya Li, Jing Li, Li-Yun Liu, Dan Wang, Robert J. Capon, and Fan Sun
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Pharmacology ,Meroterpene ,Benzimidazole ,South china ,ATP citrate lyase ,biology ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Phosphatase ,Pharmaceutical Science ,Lyase ,biology.organism_classification ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,Sponge ,Complementary and alternative medicine ,chemistry ,Drug Discovery ,Molecular Medicine ,Moiety - Abstract
Eleven new nitrogenous meroterpenoids, cinerols A-K (1-11), were isolated from the marine sponge Dysidea cinerea collected in the South China Sea, and their structures were determined by detailed spectroscopic analysis. Cinerols A (1) and B (2) feature a rare 5H-pyrrolo[1,2a]benzimidazole moiety, while cinerols C-G (3-7) are examples of rare meroterpene benzoxazoles. The cinerols are noncytotoxic to human melanoma A375 cells at the concentration of 32 μM; however, selected cinerols exhibit moderate inhibitory activity against one or more of protein-tyrosine phosphatase 1B, ATP-citrate lyase, and SH2 domain-containing phosphatase-1 with IC50 values of 2.8-27 μM.
- Published
- 2019
21. The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research
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Jie Li, Ben Shen, Orazio Taglialatela-Scafati, Matthias Niemitz, Sonja Sturm, Jian Min Yue, Andrei G. Kutateladze, Craig M. Williams, Nicholas H. Oberlies, Phillip Crews, Jean-Hugues Renault, Hermann Stuppner, John B. MacMillan, David Coppage, Harald Gross, Bin Gui Wang, Hiroyuki Koshino, Shao-Nong Chen, Bradley S. Moore, Carla M. Saunders, Jonathan Bisson, Andersson Barison, Miaomiao Liu, David G. I. Kingston, Young Hae Choi, Dean J. Tantillo, Mary J. Garson, Christoph Seger, Mehdi A. Beniddir, Hsiau Wei Lee, Wolfgang Robien, Zhengren Xu, Maique W. Biavatti, Tadeusz F. Molinski, David C. Lankin, Stefan Bluml, Damien Jeannerat, Philip G. Williams, José Rivera-Chávez, Julien Wist, Grégory Genta-Jouve, Ram P. Neupane, James B. McAlpine, Chen Zhang, Ronald J. Quinn, Joo-Won Nam, William H. Gerwick, Giovanni Appendino, Fernanda Maria Marins Ocampos, Jean-Marc Nuzillard, Joseph M. Egan, Luke Hunter, Marie Csete, Guohui Pan, Robert Verpoorte, Roger G. Linington, Tyler A. Johnson, Precilia Hermanto, Kerry L. McPhail, Mark S. Butler, Guy Lewin, Charlotte Simmler, Guido F. Pauli, Michael T. Crimmins, Mary Kay Harper, Thomas J. Schmidt, Christoph Steinbeck, James M. Hook, Nai Yun Ji, D. Sai Reddy, Asmaa Boufridi, Robert J. Capon, Pradeep Dewapriya, Jeannerat, Damien, Mcalpine, James B, Chen, Shao-Nong, Kutateladze, Andrei, Macmillan, John B, Appendino, Giovanni, Barison, Andersson, Beniddir, Mehdi A, Biavatti, Maique W, Bluml, Stefan, Boufridi, Asmaa, Butler, Mark S, Capon, Robert J, Choi, Young H, Coppage, David, Crews, Phillip, Crimmins, Michael T, Csete, Marie, Dewapriya, Pradeep, Egan, Joseph M, Garson, Mary J, Genta-Jouve, Grégory, Gerwick, William H, Gross, Harald, Harper, Mary Kay, Hermanto, Precilia, Hook, James M, Hunter, Luke, Nai-Yun, Ji, Johnson, Tyler A, Kingston, David G I, Koshino, Hiroyuki, Lee, Hsiau-Wei, Lewin, Guy, Jie, Li, Linington, Roger G, Liu, Miaomiao, Mcphail, Kerry L, Molinski, Tadeusz F, Moore, Bradley S, Nam, Joo-Won, Neupane, Ram P, Niemitz, Matthia, Nuzillard, Jean-Marc, Oberlies, Nicholas H, Ocampos, Fernanda M M, Pan, Guohui, Quinn, Ronald J, Reddy, D Sai, Renault, Jean-Hugue, Rivera-Chávez, José, Robien, Wolfgang, Saunders, Carla M, Schmidt, Thomas J, Seger, Christoph, Shen, Ben, Steinbeck, Christoph, Stuppner, Hermann, Sturm, Sonja, Taglialatela-Scafati, Orazio, Tantillo, Dean J, Verpoorte, Robert, Wang, Bin-Gui, Williams, Craig M, Williams, Philip G, Wist, Julien, Yue, Jian-Min, Zhang, Chen, Zhengren, Xu, Simmler, Charlotte, Lankin, David C, Bisson, Jonathan, Pauli, Guido F, Thallion Pharmaceuticals Inc., Brunel University London [Uxbridge], Dipartimento di Scienze Chimiche, DIPARTIMENTO DI SCIENZE CHIMICHE, Departamento de Química, Universidade Federal do Paraná (UFPR), Molécules bioactives, conception, isolement et synthèse (MBCIS), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Equipe C-TAC (UMR 8638), Chimie Organique, Médicinale et Extractive et Toxicologie Expérimentale (COMETE - UMR 8638), Université Paris Descartes - Paris 5 (UPD5)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Université Sorbonne Paris Cité (USPC), University of Tübingen, University of New South Wales [Sydney] (UNSW), Department of organic Chemistry - University of Geneva, University of Geneva [Switzerland], Department of Chemistry and Biochemistry, University of California, University of California [Santa Cruz] (UCSC), University of California-University of California, Center for Marine Biotechnology and Biomedicine, University of California, Institut de Chimie Moléculaire de Reims - UMR 7312 (ICMR), SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-SFR CAP Santé (Champagne-Ardenne Picardie Santé), Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Chinese Academy of Sciences [Beijing] (CAS), University of Münster, European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, University of Innsbruck, Section Metabolomics (DIVISION OF PHARMACOGNOSY), Universiteit Leiden [Leiden]-Institute of Biology, Institut National de l'Environnement Industriel et des Risques (INERIS), Université Paris Descartes - Paris 5 (UPD5)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Centre National de la Recherche Scientifique (CNRS), and Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS)
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NMR, Natural Products, Raw Data, Reproducibility ,Value (ethics) ,Magnetic Resonance Spectroscopy ,Molecular Conformation ,[CHIM.INOR]Chemical Sciences/Inorganic chemistry ,010402 general chemistry ,Medical and Health Sciences ,01 natural sciences ,Biochemistry ,Article ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Component (UML) ,Drug Discovery ,Dissemination ,Biological Products ,Biological studies ,010405 organic chemistry ,Organic Chemistry ,Reproducibility of Results ,Biological Sciences ,Transparency (behavior) ,Data science ,Nmr data ,0104 chemical sciences ,Chemical Sciences ,ddc:540 ,Generic health relevance ,Natural Product Research ,Raw data ,[CHIM.CHEM]Chemical Sciences/Cheminformatics - Abstract
International audience; With contributions from the global natural product (NP) research community, and continuing the Raw Data Initiative, this review collects a comprehensive demonstration of the immense scientific value of disseminating raw nuclear magnetic resonance (NMR) data, independently of, and in parallel with, classical publishing outlets. A comprehensive compilation of historic to present-day cases as well as contemporary and future applications show that addressing the urgent need for a repository of publicly accessible raw NMR data has the potential to transform natural products (NPs) and associated fields of chemical and biomedical research. The call for advancing open sharing mechanisms for raw data is intended to enhance the transparency of experimental protocols, augment the reproducibility of reported outcomes, including biological studies, become a regular component of responsible research, and thereby enrich the integrity of NP research and related fields.
- Published
- 2019
22. Cell-Penetrating Peptides-Based Liposomal Delivery System Enhanced Immunogenicity of Peptide-Based Vaccine against Group A Streptococcus
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Jieru Yang, Zeinab G. Khalil, Mariusz Skwarczynski, Armira Azuar, Robert J. Capon, Waleed M. Hussein, Nirmal Marasini, Istvan Toth, and Farrhana Firdaus
- Subjects
0301 basic medicine ,liposomes ,Immunology ,02 engineering and technology ,Immunopotentiator ,Pharmacology ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Immune system ,Drug Discovery ,Pharmacology (medical) ,Liposome ,biology ,Chemistry ,Immunogenicity ,group A streptococcus ,Lipopeptide ,021001 nanoscience & nanotechnology ,vaccine delivery ,030104 developmental biology ,Infectious Diseases ,biology.protein ,Cell-penetrating peptide ,Medicine ,Nasal administration ,peptide-based vaccine ,Antibody ,0210 nano-technology ,cell-penetrating peptide - Abstract
Peptide-based vaccine development represents a highly promising strategy for preventing Group A Streptococcus (GAS) infection. However, these vaccines need to be administered with the help of a delivery system and/or immune adjuvant. Cell-penetrating peptides (CPPs) have been used as a powerful tool for delivering various therapeutic agents, including peptides, as they can overcome the permeability barrier of cell membranes. Here, we used CPPs to deliver our lead lipopeptide-based vaccine (LCP-1). CPPs were anchored through a spacer to LCP-1-bearing multilamellar and unilamellar liposomes and administered to Swiss outbred mice. Tat47–57 conjugated to two palmitic acids via a (Gly)6 spacer (to form a liposome-anchoring moiety) was the most efficient system for triggering immune responses when combined with multilamellar liposomes bearing LCP-1. The immunostimulatory potential of a variety of other CPPs was examined following intranasal administration in mice. Among them, LCP-1/liposomes/Tat47–57 and LCP-1/liposomes/KALA induced the highest antibody titers. The antibodies produced showed high opsonic activity against clinically isolated GAS strains D3840 and GC2 203. The use of the CPP-liposome delivery system is a promising strategy for liposome-based GAS vaccine development.
- Published
- 2021
23. N-Amino-l-Proline Methyl Ester from an Australian Fish Gut-Derived Fungus: Challenging the Distinction between Natural Product and Artifact
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Robert J. Capon, Osama G. Mohamed, and Zeinab G. Khalil
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In situ ,HPLC analysis ,Stereochemistry ,prolinimines ,Pharmaceutical Science ,Fungus ,010402 general chemistry ,01 natural sciences ,Article ,chemistry.chemical_compound ,Schiff base ,media component ,Drug Discovery ,Proline ,fungal metabolites ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,lcsh:QH301-705.5 ,Mycelium ,Natural product ,biology ,010405 organic chemistry ,Chemistry ,N-amino-l-proline methyl ester ,artifact ,biology.organism_classification ,l<%2Fspan>-proline+methyl+ester%22">N-amino-l-proline methyl ester ,0104 chemical sciences ,Transformation (genetics) ,5-hydroxymethyfurfural ,lcsh:Biology (General) ,Yield (chemistry) ,2,5-furandicarboxaldehyde - Abstract
Further investigation into a fish gut-derived fungus Evlachovaea sp. CMB-F563, previously reported to produce the unprecedented Schiff base prolinimines A–B (1–2), revealed a new cryptic natural product, N-amino-l-proline methyl ester (5)—only the second reported natural occurrence of an N-amino-proline, and the first from a microbial source. To enable these investigations, we developed a highly sensitive analytical derivitization methodology, using 2,4-dinitrobenzaldehyde (2,4-DNB) to cause a rapid in situ transformation of 5 to the Schiff base 9, with the latter more readily detectable by UHPLC-DAD (400 nm) and HPLC-MS analyses. Moreover, we demonstrate that during cultivation 5 is retained in fungal mycelia, and it is only when solvent extraction disrupts mycelia that 5 is released to come in contact with the furans 7–8 (which are themselves produced by thermal transformation of carbohydrates during media autoclaving prior to fungal inoculation). Significantly, on contact, 5 undergoes a spontaneous condensation with 7–8 to yield the Schiff base prolinimines 1–2, respectively. Observations made during this study prompted us to reflect on what it is to be a natural product (i.e., 5), versus an artifact (i.e., 1–2), versus a media component (i.e., 7–8).
- Published
- 2021
24. New from Old: Thorectandrin Alkaloids in a Southern Australian Marine Sponge, Thorectandra choanoides (CMB-01889)
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Robert J. Capon, Laizuman Nahar, Angela A. Salim, Ahmed H. Elbanna, and Shamsunnahar Khushi
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indoleamine 2,3-dioxygenase ,Stereochemistry ,Pharmaceutical Science ,Conjugated system ,Thorectandra choanoides ,01 natural sciences ,tryptophan alkaloid ,03 medical and health sciences ,Drug Discovery ,Reactivity (chemistry) ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,lcsh:QH301-705.5 ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,010405 organic chemistry ,Chemistry ,Alkaloid ,biology.organism_classification ,0104 chemical sciences ,aplysinopsins ,Sponge ,Transformation (genetics) ,Enzyme ,lcsh:Biology (General) ,GNPS molecular network ,Michael reaction ,Pharmacophore - Abstract
Thorectandra choanoides (CMB-01889) was prioritized as a source of promising new chemistry from a library of 960 southern Australian marine sponge extracts, using a global natural products social (GNPS) molecular networking approach. The sponge was collected at a depth of 45 m. Chemical fractionation followed by detailed spectroscopic analysis led to the discovery of a new tryptophan-derived alkaloid, thorectandrin A (1), with the GNPS cluster revealing a halo of related alkaloids 1a–1n. In considering biosynthetic origins, we propose that Thorectandrachoanoides (CMB-01889) produces four well-known alkaloids, 6-bromo-1′,8-dihydroaplysinopsin (2), 6-bromoaplysinopsin (3), aplysinopsin (4), and 1′,8-dihydroaplysinopsin (10), all of which are susceptible to processing by a putative indoleamine 2,3-dioxygenase-like (IDO) enzyme to 1a–1n. Where the 1′,8-dihydroalkaloids 2 and 10 are fully transformed to stable ring-opened thorectandrins 1 and 1a–1b, and 1h–1j, respectively, the conjugated precursors 3 and 4 are transformed to highly reactive Michael acceptors that during extraction and handling undergo complete transformation to artifacts 1c–1g, and 1k–1n, respectively. Knowledge of the susceptibility of aplysinopsins as substrates for IDOs, and the relative reactivity of Michael acceptor transformation products, informs our understanding of the pharmaceutical potential of this vintage marine pharmacophore. For example, the cancer tissue specificity of IDOs could be exploited for an immunotherapeutic response, with aplysinopsins transforming in situ to Michael acceptor thorectandrins, which covalently bind and inhibit the enzyme.
- Published
- 2021
25. Structure Revision of Penipacids A–E Reveals a Putative New Cryptic Natural Product, N-aminoanthranilic Acid, with Potential as a Transcriptional Regulator of Silent Secondary Metabolism
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Zeinab G. Khalil, Sarani Kankanamge, and Robert J. Capon
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N-aminoanthranilic acid ,Schiff base adduct ,artifact ,structure revision ,total synthesis ,transcriptional regulator ,microbioreactor cultivation profiling ,Drug Discovery ,Pharmaceutical Science ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) - Abstract
Reconsideration of the spectroscopic data for penipacids A–E, first reported in 2013 as the acyclic amidines 1–5 from the South China deep sea sediment-derived fungus Penicillium paneum SD-44, prompted a total synthesis structure revision as the hydrazones 6–10. This revision strongly supported the proposition that penipacids A–B (6–7) were artifact Schiff base adducts of the cryptic (undetected) natural product N-aminoanthranilic acid (11) with diacetone alcohol, induced by excessive exposure to acetone and methanol under acidic handling conditions. Likewise, the revised structures for penipacids C–D (8–9) and E (10) raise the possibility that they may also be artifact Schiff base adducts of 11 and the media constituents pyruvic acid and furfural, respectively. A review of the natural products literature revealed other Schiff base (hydrazone) natural products that might also be viewed as Schiff base adduct artifacts of 11. Having raised the prospect that 11 is an undetected and reactive cryptic natural product, we went on to establish that 11 is not cytotoxic to a range of bacterial, fungal or mammalian (human) cell types. Instead, when added as a supplement to microbial cultivations, 11 can act as a chemical cue/transcriptional regulator, activating and/or enhancing the yield of biosynthetic gene clusters encoding for other natural product chemical defenses. This study demonstrates the value of challenging the structure and artifact status of natural products, as a window into the hidden world of cryptic and highly reactive natural products.
- Published
- 2022
26. Chrysosporazines Revisited: Regioisomeric Phenylpropanoid Piperazine P-Glycoprotein Inhibitors from Australian Marine Fish-Derived Fungi
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Amila Agampodi Dewa, Zeinab G. Khalil, Ahmed H. Elbanna, and Robert J. Capon
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ATP Binding Cassette Transporter, Subfamily B ,Organic Chemistry ,Australia ,Fishes ,chrysosporazine ,brasiliamide ,phenylpropanoid piperazine ,P-glycoprotein inhibitor ,fungal natural product ,Chrysosporium ,Aspergillus ,Spiromastix ,biodiscovery ,Pharmaceutical Science ,Analytical Chemistry ,Tandem Mass Spectrometry ,Chemistry (miscellaneous) ,Drug Discovery ,Animals ,Molecular Medicine ,Physical and Theoretical Chemistry ,Piperazine ,Glycoproteins - Abstract
A library of fungi previously recovered from the gastrointestinal tract (GIT) of several fresh, commercially sourced Australian mullet fish was re-profiled for production of a rare class of phenylpropanoid piperazine alkaloids (chrysosporazines) using an integrated platform of; (i) miniaturized 24-well plate cultivation profiling (MATRIX), (ii) UPLC-DAD and UPLC-QTOF-MS/MS (GNPS) chemical profiling, and; (iii) precursor directed biosynthesis to manipulate in situ biosynthetic performance and outputs; to detect two new fungal producers of chrysosporazines. Chemical analysis of an optimized PDA solid phase cultivation of Aspergillus sp. CMB-F661 yielded the new regioisomeric chrysosporazine T (1) and U (2), while precursor directed cultivation amplified production and yielded the very minor new natural products azachrysosporazine T1 (3) and U1 (4), and the new unnatural analogues neochrysosporazine R (5) and S (6). Likewise, chemical analysis of an optimized M1 solid phase cultivation of Spiromastix sp. CMB-F455 lead to the GNPS detection of multiple chrysosporazines and brasiliamides, and the isolation and structure elucidation of chrysosporazine D (7) and brasiliamide A (8). Access to new chrysosporazine regioisomers facilitated structure activity relationship investigations to better define the chrysosporazine P-glycoprotein (P-gp) inhibitory pharmacophore, which is exceptionally potent at reversing doxorubrin resistance in P-gp over expressing colon carcinoma cells (SW600 Ad300).
- Published
- 2022
27. Metarhizides A–C and metarhizosides A–B: PKS-NRPS macrolides and aromatic glycosides from an Australian fish gut-derived fungus, Metarhizium sp. CMB-F624
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Osama G. Mohamed, Zeinab G. Khalil, Viviene Santiago, and Robert J. Capon
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Organic Chemistry ,Drug Discovery ,Biochemistry - Published
- 2022
28. A dual-adjuvanting strategy for peptide-based subunit vaccines against group A Streptococcus: Lipidation and polyelectrolyte complexes
- Author
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Ummey Jannatun Nahar, Zeinab G. Khalil, Lili Zhao, Istvan Toth, Robert J. Capon, Mariusz Skwarczynski, Waleed M. Hussein, and Jieru Yang
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Cell Survival ,Streptococcus pyogenes ,Clinical Biochemistry ,Pharmaceutical Science ,Peptide ,Biochemistry ,Antibodies ,Cell Line ,chemistry.chemical_compound ,Lipopeptides ,Mice ,Adjuvants, Immunologic ,Streptococcal Infections ,Drug Discovery ,Animals ,Humans ,Molecular Biology ,Administration, Intranasal ,chemistry.chemical_classification ,Chitosan ,biology ,Chemistry ,Immunogenicity ,Organic Chemistry ,Polyglutamic acid ,Cholic acid ,Lipopeptide ,Glutamic acid ,Polyelectrolytes ,Polyelectrolyte ,Immunity, Humoral ,Polyglutamic Acid ,Chromobox Protein Homolog 5 ,Vaccines, Subunit ,biology.protein ,Molecular Medicine ,Nanoparticles ,lipids (amino acids, peptides, and proteins) ,Female ,Antibody - Abstract
In order to improve the immunogenicity of peptide-based vaccines against group A Streptococcus (GAS), lipid moieties (C16 lipoamino acid and cholic acid) were conjugated with peptide antigen (P25-J8) and further modified with α-poly(glutamic acid) (α-PGA). Thus, positively charged lipopeptide vaccine candidates LCP-1 (P25-K(J8)-SS-C16-C16) and LCP-2 (P25-K(J8)-SS-K(cholic acid)) were synthesized. Negatively charged LCP-3 (P25-K(PGA-J8)-SS-K(cholic acid)) was also produced by attaching α-PGA to the J8 N-terminus of LCP-2. Polyelectrolyte complex (PEC) nanoparticles were formulated with heparin and/or trimethyl chitosan (TMC) for delivery of the lipopeptide vaccine candidates. The ability of the antigen-loaded nanoparticles to induce humoral immune responses was examined in outbred female Swiss mice following intranasal immunization. The antibodies produced were opsonic against all clinical GAS isolates tested.
- Published
- 2020
29. Opsonic Activity of Conservative Versus Variable Regions of the Group A Streptococcus M Protein
- Author
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Lili Zhao, Robert J. Capon, Jieru Yang, Xiumin Wang, Istvan Toth, Chuankai Dai, Zeinab G. Khalil, Rachel J. Stephenson, and Waleed M. Hussein
- Subjects
0301 basic medicine ,opsonization ,Myeloma protein ,M protein ,Immunology ,lcsh:Medicine ,medicine.disease_cause ,Group A ,J8-epitope ,Virulence factor ,Article ,Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Medicine ,Pharmacology (medical) ,88/30-epitope ,Opsonin ,Pharmacology ,biology ,business.industry ,Streptococcus ,lcsh:R ,Group A Streptococcus ,peptide-based subunit vaccine ,Antibody opsonization ,030104 developmental biology ,Infectious Diseases ,biology.protein ,Nasal administration ,Antibody ,business ,030215 immunology - Abstract
Group A Streptococcus (GAS) and GAS-associated infections are a global challenge, with no licensed GAS vaccine on the market. The GAS M protein is a critical virulence factor in the fight against GAS infection, and it has been a primary target for GAS vaccine development. Measuring functional opsonic antibodies against GAS is an important component in the clinical development path for effective vaccines. In this study, we compared the opsonic activity of two synthetic, self-adjuvanting subunit vaccines containing either the J8- or 88/30-epitope in Swiss outbred mice using intranasal administration. Following primary immunization and three boosts, sera were assessed for IgG activity using ELISA, and opsonization activity against seven randomly selected clinical isolates of GAS was measured. Vaccine constructs containing the conservative J8-epitope showed significant opsonic activity against six out of the seven GAS clinical isolates, while the vaccine containing the variable 88/30-epitope did not show any significant opsonic activity.
- Published
- 2020
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30. Trichodermides A–E: New Peptaibols Isolated from the Australian Termite Nest-Derived Fungus Trichoderma virens CMB-TN16
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Hou-Wen Lin, Zeinab G. Khalil, Wei-Hua Jiao, Robert J. Capon, Pradeep Dewapriya, and Angela A. Salim
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Antifungal ,Antifungal Agents ,medicine.drug_class ,Stereochemistry ,Sequence Homology ,Pharmaceutical Science ,Fungus ,01 natural sciences ,Analytical Chemistry ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,Amino Acids ,Nuclear Magnetic Resonance, Biomolecular ,Peptaibols ,Trichoderma ,Pharmacology ,biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Trichoderma virens ,Australia ,Biological activity ,biology.organism_classification ,Anti-Bacterial Agents ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Sequence homology ,Complementary and alternative medicine ,Molecular Medicine ,Fermentation ,Macrolides ,Nest (protein structural motif) - Abstract
Chemical analysis of a fermentation of the Australian termite nest-derived fungus Trichoderma virens CMB-TN16 yielded five new acyclic nonapeptides, trichodermides A–E (1–5). Amino acid residues, configurations, and sequences were determined by a combination of spectroscopic (NMR and MS-MS) and chemical (C3 Marfey’s) methods. The trichodermides adhere to the sequence homology pattern common to Trichoderma 11 amino acid residue peptaibols; however, unlike other peptaibols the trichodermides do not exhibit antibacterial or antifungal activity and exhibit low to no cytotoxicity against mammalian cells. This variability in biological activity highlights the importance of knowing both planar structures and absolute configurations when interpreting structure–activity relationships.
- Published
- 2018
31. Methods in Microbial Biodiscovery
- Author
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Taizong Wu, Zeinab G. Khalil, Angela A. Salim, Robert J. Capon, and Ahmed H. Elbanna
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Aquatic Organisms ,Biological Products ,molecular networking ,Engineering ,Bacteria ,QH301-705.5 ,business.industry ,Ecology ,Australia ,Fungi ,Pharmaceutical Science ,Review ,media MATRIX ,artifacts ,microbial biodiscovery ,chemical profiling ,microbial isolation ,Drug Discovery ,Molecular networking ,Animals ,microbial natural products ,Biology (General) ,business ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) - Abstract
This review presents an account of the microbial biodiscovery methodology developed and applied in our laboratory at The University of Queensland, Institute for Molecular Bioscience, with examples drawn from our experiences studying natural products produced by Australian marine-derived (and terrestrial) fungi and bacteria.
- Published
- 2021
32. Small-Molecule Inhibitors of the SOX18 Transcription Factor
- Author
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Sreeman K. Mamidyala, Peter Koopman, Yann Gambin, Robert J. Capon, Kirill Alexandrov, Angela A. Salim, Avril A. B. Robertson, Johannes Zuegg, Mehdi Moustaqil, Jeroen Overman, Kamesh Narasimhan, Emma Sierecki, Nina Prokoph, Frank Fontaine, Mark E. Cooper, Mathias Francois, Ralf Jauch, and Linda H.L. Lua
- Subjects
Transcriptional Activation ,0301 basic medicine ,Clinical Biochemistry ,Regulator ,Biology ,Biochemistry ,Small Molecule Libraries ,Inhibitory Concentration 50 ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,Genes, Reporter ,Chlorocebus aethiops ,Drug Discovery ,SOXF Transcription Factors ,Animals ,Protein–DNA interaction ,Protein Interaction Maps ,Binding site ,Molecular Biology ,Transcription factor ,Pharmacology ,Genetics ,Biological Products ,Reporter gene ,Binding Sites ,RBPJ ,Drug discovery ,DNA ,Small molecule ,Protein Structure, Tertiary ,3. Good health ,Cell biology ,030104 developmental biology ,Drug Design ,Immunoglobulin J Recombination Signal Sequence-Binding Protein ,COS Cells ,Nucleic Acid Conformation ,Molecular Medicine ,Salicylic Acid ,Protein Binding - Abstract
Pharmacological modulation of transcription factors (TFs) has only met little success over the past four decades. This is mostly due to standard drug discovery approaches centered on blocking protein/DNA binding or interfering with post-translational modifications. Recent advances in the field of TF biology have revealed a central role of protein-protein interaction in their mode of action. In an attempt to modulate the activity of SOX18 TF, a known regulator of vascular growth in development and disease, we screened a marine extract library for potential small-molecule inhibitors. We identified two compounds, which inspired a series of synthetic SOX18 inhibitors, able to interfere with the SOX18 HMG DNA-binding domain, and to disrupt HMG-dependent protein-protein interaction with RBPJ. These compounds also perturbed SOX18 transcriptional activity in a cell-based reporter gene system. This approach may prove useful in developing a new class of anti-angiogenic compounds based on the inhibition of TF activity.
- Published
- 2017
33. Waspergillamide A, a Nitro depsi-Tetrapeptide Diketopiperazine from an Australian Mud Dauber Wasp-Associated Aspergillus sp. (CMB-W031)
- Author
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Zhuo Shang, Angela A. Salim, Ernest Lacey, Robert J. Capon, Michelle Quezada, and Pabasara Kalansuriya
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Stereochemistry ,Wasps ,Pharmaceutical Science ,Marine Biology ,Diketopiperazines ,Fungus ,010402 general chemistry ,01 natural sciences ,Indole Alkaloids ,Analytical Chemistry ,Mud dauber ,Nonribosomal peptide ,Depsipeptides ,Drug Discovery ,Animals ,Nuclear Magnetic Resonance, Biomolecular ,Chemical decomposition ,Pharmacology ,chemistry.chemical_classification ,Aspergillus ,Molecular Structure ,biology ,Tetrapeptide ,ATP synthase ,010405 organic chemistry ,Organic Chemistry ,Australia ,biology.organism_classification ,0104 chemical sciences ,Complementary and alternative medicine ,chemistry ,Biochemistry ,biology.protein ,Nitro ,Molecular Medicine - Abstract
Chemical profiling of extracts from a mud dauber wasp-associated fungus, Aspergillus sp. (CMB-W031), revealed a remarkably diverse array of secondary metabolites, with many biosynthetic gene clusters being transcriptionally responsive to specific culture conditions. Chemical fractionation of a jasmine rice cultivation yielded many known fungal metabolites, including the highly cytotoxic (-)-stephacidin B and an unprecedented nonribosomal peptide synthase derived nitro depsi-tetrapeptide diketopiperazine, waspergillamide A (1). All structures were assigned by detailed spectroscopic analysis and, where appropriate, chemical degradation and Marfey's analysis.
- Published
- 2017
34. Spongian-16-one Diterpenes and Their Anatomical Distribution in the Australian Nudibranch Goniobranchus collingwoodi
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Louise C. Forster, Robert J. Capon, Pradeep Dewapriya, Mary J. Garson, Anne E. Winters, and Karen L. Cheney
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Gastropoda ,Goniobranchus collingwoodi ,Pharmaceutical Science ,Zoology ,Antineoplastic Agents ,Brine shrimp ,Biology ,01 natural sciences ,Analytical Chemistry ,Terpene ,Drug Discovery ,Botany ,Palaemon ,Animals ,Humans ,Mantle (mollusc) ,Pharmacology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Australia ,Hep G2 Cells ,Nudibranch ,Palaemon serenus ,biology.organism_classification ,0104 chemical sciences ,Shrimp ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,Molecular Medicine ,Diterpenes ,Drug Screening Assays, Antitumor - Abstract
Six new (1-6) spongian-16-one analogues have been characterized from the Australian nudibranch species Goniobranchus collingwoodi, along with four known spongian-16-one derivatives. The structures and relative configuration were suggested by spectroscopic analyses informed by molecular modeling. Dissection of animal tissue revealed that the mantle and viscera differ in their terpene composition. Whole body extracts were not toxic to brine shrimp (Artemia sp.), but were unpalatable to palaemon shrimp (Palaemon serenus) at a concentration found within the nudibranch. Individual terpenes were not cytotoxic to human lung (NCIH-460), colorectal (SW620), and liver (HepG2) cancer cells.
- Published
- 2016
35. Cholic Acid-based Delivery System for Vaccine Candidates against Group A Streptococcus
- Author
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Armira Azuar, Mariusz Skwarczynski, Reshma J. Nevagi, Stacey Bartlett, Waleed M. Hussein, Lili Zhao, Istvan Toth, Zeinab G. Khalil, Tsui Ting Hei, and Robert J. Capon
- Subjects
medicine.drug_class ,medicine.medical_treatment ,Organic Chemistry ,Cholic acid ,Lipopeptide ,Pharmacology ,Biochemistry ,Immunostimulant ,Immunoadjuvant ,chemistry.chemical_compound ,Immune system ,chemistry ,Immunity ,Drug Discovery ,Peptide synthesis ,medicine ,Adjuvant - Abstract
[Image: see text] Peptide-based subunit vaccines require an immunostimulant (adjuvant) and/or delivery system to protect the antigenic peptide from degradation and induce the desired immunity. Currently available adjuvants are either too toxic for human use (experimental adjuvants) or they are limited for use in particular vaccines or licensed countries (commercial adjuvants). Therefore, there is an immediate need for novel adjuvants that are both safe and effective. Herein, we assessed the ability of cholic acid (a major bile acid) as a nontoxic, biodegradable, human-derived, potent vaccine delivery system. An antigenic peptide derived from Group A Streptococcus was conjugated to hydrophobic cholic acid via solid phase peptide synthesis to produce lipopeptide that self-assembled into rod-like nanoparticles under aqueous conditions. Following intranasal immunization in mice, this lipopeptide was capable of inducing the production of opsonic epitope-specific antibodies on its own and in liposomal formulation. The cholic acid-based conjugate induced significantly stronger humoral immune responses than cholera toxin-based adjuvant. Thus, we demonstrated, for the first time, capability of the human-derived lipid to act as a built-in immunoadjuvant for vaccines.
- Published
- 2019
36. Extracting value: mechanistic insights into the formation of natural product artifacts - case studies in marine natural products
- Author
-
Robert J. Capon
- Subjects
Value (ethics) ,Aquatic Organisms ,Magnetic Resonance Spectroscopy ,Exploit ,Computer science ,Agrochemical ,Carboxylic Acids ,010402 general chemistry ,Chemical communication ,01 natural sciences ,Biochemistry ,Natural (archaeology) ,Acetone ,chemistry.chemical_compound ,Race (biology) ,Lactones ,Drug Discovery ,Animals ,Schiff Bases ,Biological Products ,Methylene Chloride ,Natural product ,010405 organic chemistry ,business.industry ,Hydrolysis ,Organic Chemistry ,Hydrogen-Ion Concentration ,Data science ,0104 chemical sciences ,Porifera ,chemistry ,Solvents ,Natural Products Chemistry ,business ,Oxidation-Reduction - Abstract
Covering: up to the end of 2018Natural selection relentlessly drives the evolution of natural products, favoring those that enhance the survival of species. During this evolutionary journey, some natural products acquire heightened chemical reactivity towards environmental stimuli, most likely benefiting host species through more agile ecological responses, leading to superior survival outcomes (i.e., more potent and faster acting toxins and chemical defences, infection control, and intra/inter species chemical communication). Although knowledge of natural products informs our understanding of the living world, inspiring new medicines, agrochemicals and scientific tools, the study of chemically reactive natural products can be particularly informative, albeit quite challenging. For example, such natural products are often prone to facile transformations during handling, yielding new "un-natural" products commonly referred to as artifacts. These transformations can be induced by many stimuli, including modest changes in pH or temperature, or exposure to light or air (i.e., oxygen), or even common organic solvents or chromatography media. Sadly, in the race to explore and report on new natural products, knowledge of the relationship between chemically reactive natural products and their artifacts is not always recognised, documented or valued. This review seeks to recalibrate and encourage a greater awareness of the relationship between natural products and artifacts, by examining case studies in the field of marine natural products chemistry (i.e., natural products and associated artifacts from marine invertebrates and algae, and marine-derived microbes). While every effort has been made to provide a comprehensive coverage up to early 2019, any omissions are inadvertent not deliberate. Structured around the types of chemical transformations that can deliver artifacts, and the functional groups involved, the review concludes with observations on how to regulate, detect, rationalise and even exploit artifacts, going forward.
- Published
- 2019
37. Self-assembly of trimethyl chitosan and poly(anionic amino acid)-peptide antigen conjugate to produce a potent self-adjuvanting nanovaccine delivery system
- Author
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Robert J. Capon, Zeinab G. Khalil, Waleed M. Hussein, Istvan Toth, Mariusz Skwarczynski, Wei Dai, and Reshma J. Nevagi
- Subjects
Clinical Biochemistry ,Pharmaceutical Science ,Peptide ,01 natural sciences ,Biochemistry ,Epitope ,chemistry.chemical_compound ,Drug Delivery Systems ,Antigen ,Drug Discovery ,Amino Acids ,Molecular Biology ,chemistry.chemical_classification ,Chitosan ,biology ,010405 organic chemistry ,Immunogenicity ,Organic Chemistry ,Polyglutamic acid ,0104 chemical sciences ,Amino acid ,010404 medicinal & biomolecular chemistry ,chemistry ,biology.protein ,Peptide vaccine ,Molecular Medicine ,Nanoparticles ,Antibody ,Peptides - Abstract
Short peptides derived from virulent pathogen proteins are promising antigens for the development of vaccines against infectious diseases. However, in order to mimic the danger signals associated with natural infection and stimulate an adaptive immune response, peptide antigens must be co-delivered with immune adjuvants. In this study, a group A streptococcus (GAS) M-protein derived B-cell epitope: J8, and universal T-helper epitope P25 containing peptides, were chemically coupled with different anionic amino acid-based polymers. The poly(anionic amino acid)-peptide antigen conjugates were mixed with trimethyl chitosan (TMC) to produce self-adjuvanting nanoparticulate vaccine candidates. TMC from two different sources were used to analyse their effect on immunogenicity. The nanoparticles produced from a peptide modified with 10 residues of polyglutamic acid and fungal TMC (NP5) stimulated production of the highest levels of serum antibodies in outbred mice. These antibodies were opsonic against all clinical GAS isolates tested.
- Published
- 2019
38. Divirensols: Sesquiterpene Dimers from the Australian Termite Nest-Derived Fungus Trichoderma virens CMB-TN16
- Author
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Hou-Wen Lin, Osama G. Mohamed, Angela A. Salim, Zeinab G. Khalil, Robert J. Capon, Pradeep Dewapriya, and Wei-Hua Jiao
- Subjects
Magnetic Resonance Spectroscopy ,Stereochemistry ,Pharmaceutical Science ,Fungus ,Isoptera ,Sesquiterpene ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Drug Discovery ,Animals ,Gliocladic acid ,Pharmacology ,Trichoderma ,biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Trichoderma virens ,Nuclear magnetic resonance spectroscopy ,biology.organism_classification ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,Acetylation ,Molecular Medicine ,Dimerization ,Sesquiterpenes ,Nest (protein structural motif) - Abstract
A chemical investigation of the Australian termite nest-derived fungus Trichoderma virens CMB-TN16 yielded the known sesquiterpene gliocladic acid (1), together with two new acetylated analogues, 3-acetylgliocladic acid (2) and 14-acetylgliocladic acid (3), and seven new dimeric congeners, divirensols A-G (4-10). All metabolites were identified by detailed spectroscopic analysis, supported by biosynthetic considerations, and were assessed for antibacterial and cytotoxic properties. The divirensols are examples of an exceptionally rare class of dimeric sesquiterpene, likely linked via a highly convergent biosynthetic pathway. HPLC-DAD-MS analysis of the crude fungal extract detected ions attributed to putative monomeric biosynthetic precursors.
- Published
- 2019
39. Polyethylenimine quantity and molecular weight influence its adjuvanting properties in liposomal peptide vaccines
- Author
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Istvan Toth, Wenbin Huang, Jieru Yang, Robert J. Capon, Waleed M. Hussein, Charles C Dai, Jingwen Wang, Zeinab G. Khalil, and Rachel J. Stephenson
- Subjects
medicine.medical_treatment ,Clinical Biochemistry ,Pharmaceutical Science ,macromolecular substances ,Pharmacology ,01 natural sciences ,Biochemistry ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,Immune system ,Adjuvants, Immunologic ,In vivo ,Streptococcal Infections ,Drug Discovery ,medicine ,Animals ,Polyethyleneimine ,Molecular Biology ,Liposome ,Polyethylenimine ,Molecular Structure ,biology ,010405 organic chemistry ,Chemistry ,Streptococcal Vaccines ,Organic Chemistry ,technology, industry, and agriculture ,Streptococcus ,In vitro ,0104 chemical sciences ,Molecular Weight ,010404 medicinal & biomolecular chemistry ,Liposomes ,Vaccines, Subunit ,biology.protein ,Molecular Medicine ,Nasal administration ,Antibody ,Adjuvant - Abstract
We recently reported that polyethylenimine (PEI; molecular weight of 600 Da) acted as a vaccine adjuvant for liposomal group A Streptococcus (GAS) vaccines, eliciting immune responses in vivo with IgG antibodies giving opsonic activity against five Australian GAS clinical isolates. However, to date, no investigation comparing the structure–activity relationship between the molecular weight of PEI and its adjuvanting activity in vaccine development has been performed. We hypothesized that the molecular weight and quantity of PEI in a liposomal vaccine will impact its adjuvanting properties. In this study, we successfully formulated liposomes containing different molecular weights of PEI (600, 1800, 10k and 25k Da) and equivalents of PEI (0.5, 1 and 2) of branched PEI. Outbred mice were administrated the vaccine formulations intranasally, and the mice that received a high ratio of PEI 600 reported a stronger immune response than the mice that received a lower ratio of PEI 600. Interestingly, mice that received the same quantity of PEI 600, PEI 10k and PEI 25k showed similar immune responses in vivo and in vitro. This comparative study highlights the ratio of PEI present in the liposome vaccines impacts adjuvanting activity, however, PEI molecular weight did not significantly enhance its adjuvanting properties. We also report that the stability of PEI liposomes is critical for vaccines to elicit the desired immune response.
- Published
- 2021
40. Structure revision of the rare sponge metabolite echinosulfone A, and biosynthetically related echinosulfonic acids A–D
- Author
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Pratik Neupane, Robert J. Capon, and Angela A. Salim
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Natural product ,biology ,010405 organic chemistry ,Stereochemistry ,Metabolite ,Organic Chemistry ,Total synthesis ,010402 general chemistry ,biology.organism_classification ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,chemistry.chemical_compound ,Sponge ,chemistry ,Drug Discovery - Abstract
A short Friedel-Crafts mediated total synthesis has informed structure revision of the rare marine sponge natural product echinosulfone A (1a) and the biosynthetically related echinosulfonic acids A–D (2a–5a).
- Published
- 2020
41. Polyacrylate–Peptide Antigen Conjugate as a Single-Dose Oral Vaccine against Group A Streptococcus
- Author
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Lili Zhao, Istvan Toth, Mohammad Omer Faruck, Zeinab G. Khalil, Robert J. Capon, Mariusz Skwarczynski, and Waleed M. Hussein
- Subjects
0301 basic medicine ,medicine.drug_class ,Immunology ,Antibiotics ,lcsh:Medicine ,02 engineering and technology ,medicine.disease_cause ,Group A ,Epitope ,03 medical and health sciences ,Drug Discovery ,peptide vaccine ,medicine ,Pharmacology (medical) ,group a streptococcus ,Pharmacology ,biology ,Streptococcus ,business.industry ,Communication ,lcsh:R ,Group A Streptococcus ,polymer–peptide conjugate ,021001 nanoscience & nanotechnology ,oral delivery ,030104 developmental biology ,Infectious Diseases ,Immunization ,Peptide vaccine ,biology.protein ,nanoparticles ,Antibody ,0210 nano-technology ,business ,poly (methyl acrylate) ,Conjugate - Abstract
Group A Streptococcus (GAS)-associated rheumatic heart disease is a leading cause of death caused by GAS infection. While antibiotics can treat the infection in most cases, growing antibiotic resistance, late medical intervention, and recurrent infection are major obstacles to the effective treatment of GAS-associated diseases. As GAS infection typically originates from the bacterial colonization of mucosal tissue in the throat, an oral vaccine that can generate both systemic and mucosal immune responses would solve problems associated with traditional medical interventions. Moreover, orally delivered vaccines are more easily administered and less expensive for mass immunization. In this study, the B-cell epitope J8, derived from GAS M protein, and universal T-helper Pan HLA-DR-binding epitope peptide (PADRE), were conjugated to poly (methyl acrylate) (PMA) to form a self-assembled nanoparticle vaccine candidate (PMA-P-J8). Strong systemic and mucosal immune responses were induced upon single oral immunization of mice with the conjugate. The antibodies generated were opsonic against GAS clinical isolates as measured after boost immunization. Thus, we developed a simple conjugate as an effective, adjuvant-free oral peptide-based vaccine.
- Published
- 2020
42. Cacolides: Sesterterpene Butenolides from a Southern Australian Marine Sponge
- Author
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Shamsunnahar, Khushi, Laizuman, Nahar, Angela A, Salim, and Robert J, Capon
- Subjects
GNPS ,Aquatic Organisms ,Magnetic Resonance Spectroscopy ,Sesterterpenes ,Molecular Structure ,Australia ,Chemical Fractionation ,dereplication ,Article ,Porifera ,Biological Factors ,4-Butyrolactone ,Tandem Mass Spectrometry ,Drug Discovery ,Animals ,Cacospongia sp ,sesterterpene tetronic acids ,sesterterpene butenolides ,Chromatography, High Pressure Liquid - Abstract
Chemical analysis of a marine sponge, Cacospongia sp. (CMB-03404), obtained during deep sea commercial fishing activities off the southern coast of Australia, yielded an unprecedented family of sesterterpene α-methyl-γ-hydroxybutenolides, cacolides A–L (1–12), together with biosynthetically related norsesterterpene carboxylic acids, cacolic acids A–C (13–15). Structures were assigned on the basis of detailed spectroscopic analysis with comparisons to known natural products and biosynthetic considerations. In addition to revealing new chemical diversity, this study provided a valuable platform for comparing and contrasting the capabilities of the traditional dereplication technologies of HPLC-DAD, HPLC-MS and NMR, with those of the emerging HPLC-MS/MS approach known as global natural products social molecular networking (GNPS), as applied to marine sponge sesterterpene tetronic acids.
- Published
- 2018
43. Correction: The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research
- Author
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Mary J. Garson, Jean-Marc Nuzillard, Ronald J. Quinn, Charlotte Simmler, Roger G. Linington, Tyler A. Johnson, Precilia Hermanto, Robert Verpoorte, Jian-Min Yue, Craig M. Williams, Guy Lewin, Bradley S. Moore, Dean J. Tantillo, Damien Jeannerat, Jie Li, Ram P. Neupane, Christoph Steinbeck, Nicholas H. Oberlies, James M. Hook, Hermann Stuppner, David G. I. Kingston, Giovanni Appendino, Carla M. Saunders, Jean-Hugues Renault, John B. MacMillan, Asmaa Boufridi, Wolfgang Robien, Mark S. Butler, Orazio Taglialatela-Scafati, Matthias Niemitz, Michael T. Crimmins, David C. Lankin, Luke Hunter, Nai Yun Ji, Philip G. Williams, Mehdi A. Beniddir, Robert J. Capon, Stefan Bluml, Pradeep Dewapriya, Maique W. Biavatti, Thomas J. Schmidt, Harald Gross, Julien Wist, Joo-Won Nam, Bin Gui Wang, Miaomiao Liu, Jonathan Bisson, James B. McAlpine, Ben Shen, Chen Zhang, Phillip Crews, Fernanda Maria Marins Ocampos, David Coppage, Grégory Genta-Jouve, Andersson Barison, José Rivera-Chávez, Young Hae Choi, Sonja Sturm, Hiroyuki Koshino, Hsiau-Wei Lee, Guido F. Pauli, Christoph Seger, Joseph M. Egan, D. Sai Reddy, Mary Kay Harper, William H. Gerwick, Marie Csete, Guohui Pan, Kerry L. McPhail, Andrei G. Kutateladze, Shao-Nong Chen, Zhengren Xu, Tadeusz F. Molinski, Thallion Pharmaceuticals Inc., Brunel University London [Uxbridge], Dipartimento di Scienze Chimiche, DIPARTIMENTO DI SCIENZE CHIMICHE, Departamento de Química, Universidade Federal do Paraná (UFPR), Molécules bioactives, conception, isolement et synthèse (MBCIS), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Chimie Organique, Médicinale et Extractive et Toxicologie Expérimentale (COMETE - UMR 8638), Université Paris Descartes - Paris 5 (UPD5)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), University of Tübingen, University of Maryland [College Park], University of Maryland System, School of Mathematics [Manchester], University of Manchester [Manchester], Department of organic Chemistry - University of Geneva, University of Geneva [Switzerland], University of Michigan [Ann Arbor], University of Michigan System, Institut de Chimie Moléculaire de Reims - UMR 7312 (ICMR), SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-SFR CAP Santé (Champagne-Ardenne Picardie Santé), Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Chinese Academy of Sciences [Beijing] (CAS), Hamburg University of Applied Sciences [Hamburg], European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, University of Innsbruck, Section of Metabolomics, Pharmacognosy Department, Institute of Biology, Gorlaeus Laboratories, Universiteit Leiden [Leiden], Institut National de l'Environnement Industriel et des Risques (INERIS), Université Paris Descartes - Paris 5 (UPD5)-Centre National de la Recherche Scientifique (CNRS), and Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Reproducibility ,business.industry ,Organic Chemistry ,Biological Sciences ,Medical and Health Sciences ,Biochemistry ,Nmr data ,Transparency (behavior) ,Chemistry ,Clinical Research ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,Chemical Sciences ,Drug Discovery ,Value (economics) ,Natural Product Research ,Process engineering ,business ,human activities ,ComputingMilieux_MISCELLANEOUS ,[CHIM.CHEM]Chemical Sciences/Cheminformatics - Abstract
With contributions from the global natural product (NP) research community, and continuing the Raw Data Initiative, this review collects a comprehensive demonstration of the immense scientific value of disseminating raw nuclear magnetic resonance (NMR) data, independently of, and in parallel with, classical publishing outlets., Covering: up to 2018 With contributions from the global natural product (NP) research community, and continuing the Raw Data Initiative, this review collects a comprehensive demonstration of the immense scientific value of disseminating raw nuclear magnetic resonance (NMR) data, independently of, and in parallel with, classical publishing outlets. A comprehensive compilation of historic to present-day cases as well as contemporary and future applications show that addressing the urgent need for a repository of publicly accessible raw NMR data has the potential to transform natural products (NPs) and associated fields of chemical and biomedical research. The call for advancing open sharing mechanisms for raw data is intended to enhance the transparency of experimental protocols, augment the reproducibility of reported outcomes, including biological studies, become a regular component of responsible research, and thereby enrich the integrity of NP research and related fields.
- Published
- 2019
44. Chemical Diversity from a Chinese Marine Red Alga, Symphyocladia latiuscula
- Author
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Angela A. Salim, Pratik Neupane, Xiuli Xu, Zeinab G. Khalil, Fuhang Song, Robert J. Capon, Paul V. Bernhardt, Haijin Yang, Liyuan Yin, and Xue Xiao
- Subjects
Aquatic Organisms ,China ,Magnetic Resonance Spectroscopy ,Stereochemistry ,Chemical structure ,aconitates ,Pharmaceutical Science ,symphyocladins ,Crystallography, X-Ray ,01 natural sciences ,Article ,Gel permeation chromatography ,chemistry.chemical_compound ,Biosynthesis ,Phenols ,Symphyocladia latiuscula ,Drug Discovery ,Animals ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Chemical composition ,lcsh:QH301-705.5 ,marine red alga ,bromophenols ,010405 organic chemistry ,Nuclear magnetic resonance spectroscopy ,Quinone methide ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry ,lcsh:Biology (General) ,Rhodophyta ,Citric acid - Abstract
This study describes an investigation into secondary metabolites that are produced by a marine red alga, Symphyocladia latiuscula, which was collected from coastal waters off Qingdao, China. A combination of normal, reversed phase, and gel chromatography was used to isolate six citric acid derived natural products, aconitates A-F (1-6), together with two known and ten new polybrominated phenols, symphyocladins C/D (7a/b), and symphyocladins H-Q (8a/b, 9a/b and 10-15), respectively. Structure elucidation was achieved by detailed spectroscopic (including X-ray crystallographic) analysis. We propose a plausible and convergent biosynthetic pathway involving a key quinone methide intermediate, linking aconitates and symphyocladins.
- Published
- 2017
45. Pursuing sesterterpene lactams in Australian Irciniidae sponges
- Author
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Ailian Zhang, Pritesh Prasad, Angela A. Salim, and Robert J. Capon
- Subjects
Sesterterpenes ,Lactams ,Stereochemistry ,Biology ,010402 general chemistry ,01 natural sciences ,Irciniidae ,chemistry.chemical_compound ,Drug Discovery ,Organic chemistry ,Animals ,Pharmacology ,chemistry.chemical_classification ,Molecular Structure ,010405 organic chemistry ,Proteins ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,Porifera ,Sponge ,chemistry ,Lactam ,New South Wales ,Tetronic acid ,Lactone - Abstract
Chemical investigation of two Irciniidae sponges collected by hand (SCUBA) from Australian near shore waters, afforded six new examples of a rare class of sesterterpene lactam; ircinialactams B (1), G (2), H (5), and I (6), and 8-hydroxyircinialactams C (3) and G (4); together with the new biosynthetically related lactone, ircinialactone A (7). Also isolated were seven biosynthetically related known Irciniidae metabolites; ircinialactams A (8) and C (9), (7E,12E,20Z,18S)-variabilin (10), (7Z,12Z,20Z,18S)-variabilin (11), (7E,12Z,20Z,18S)-variabilin (12), (7Z,12E,20Z,18S)-variabilin (13) and irciniafuran A (14). The structure elucidation of 1-14 was achieved by detailed spectroscopic analysis, and consideration of a plausible biosynthetic relationship linking Irciniidae sesterterpene β-furans, lactams and lactones.
- Published
- 2017
46. Amycolatopsins A-C: antimycobacterial glycosylated polyketide macrolides from the Australian soil Amycolatopsis sp. MST-108494
- Author
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Robert J. Capon, Zeinab G. Khalil, Ernest Lacey, Angela A. Salim, Andrew Crombie, Antje Blumenthal, and Daniel Vuong
- Subjects
medicine.drug_class ,Stereochemistry ,Microbial Sensitivity Tests ,Biology ,010402 general chemistry ,Antimycobacterial ,01 natural sciences ,Cell Line ,Mycobacterium tuberculosis ,Hydroxylation ,Polyketide ,chemistry.chemical_compound ,Structure-Activity Relationship ,Drug Discovery ,medicine ,Structure–activity relationship ,Humans ,Tuberculosis ,Soil Microbiology ,Pharmacology ,Mycobacterium bovis ,010405 organic chemistry ,biology.organism_classification ,0104 chemical sciences ,Anti-Bacterial Agents ,Actinobacteria ,Biochemistry ,chemistry ,Polyketides ,Fermentation ,Macrolides ,Bacteria - Abstract
A southern Australian soil isolate, Amycolatopsis sp. MST-108494, was subjected to a panel of fermentation and media optimization trials, supported by analytical chemical profiling, to detect and enhance production of a rare class of secondary metabolites. Chemical fractionation of two complementary fermentations yielded three new polyketides, identified by detailed spectroscopic analysis as the glycosylated macrolactones, amycolatopsins A (1), B (2) and C (3), closely related to the ammocidins and apoptolidins. Amycolatopsins 1 and 3 selectively inhibited growth of Mycobacterium bovis (BCG) and Mycobacterium tuberculosis (H37Rv) when compared with other Gram-positive or Gram-negative bacteria, with 3 exhibiting low levels of cytotoxicity toward mammalian cells. Thus, our data reveal promising structure activity relationship correlations where the antimycobacterial properties of amycolatopsins are enhanced by hydroxylation of the 6-Me (that is, 1 and 3), whereas mammalian cytotoxicity is decreased by hydrolysis of the disaccharide moiety (that is, 3).
- Published
- 2017
47. Microbiome-Mediated Biotransformation of Cane Toad Bufagenins
- Author
-
Robert J. Capon, Venkatanambi Kamalakkannan, and Angela A. Salim
- Subjects
0301 basic medicine ,Biological pest control ,Pharmaceutical Science ,Zoology ,Bacillus ,Toad ,Biology ,01 natural sciences ,Analytical Chemistry ,Cane toad ,03 medical and health sciences ,chemistry.chemical_compound ,Biotransformation ,biology.animal ,Drug Discovery ,Animals ,Microbiome ,Nuclear Magnetic Resonance, Biomolecular ,Toxins, Biological ,Pharmacology ,Marinobufagenin ,Molecular Structure ,010405 organic chemistry ,Ecology ,Microbiota ,Organic Chemistry ,food and beverages ,Bufalin ,biology.organism_classification ,0104 chemical sciences ,Bufanolides ,030104 developmental biology ,Complementary and alternative medicine ,chemistry ,Larva ,Molecular Medicine ,Bufo marinus ,Chemical defense ,Introduced Species - Abstract
Cane toads are an invasive pest species in which all life stages employ cardiotoxic bufagenins as a chemical defense against predators. Curiously, the bufagenin profiles of eggs and tadpoles are more complex than those of parotoid secretion, the principle mechanism of toxin delivery in adult toads. In an effort to understand this complexity, we determined that selected strains of adult toad parotoid-gland-associated Gram-positive bacteria, Bacillus spp., were capable of biotransforming secreted bufagenins, marinobufagenin (1), telocinobufagenin (2), bufalin (3), and resibufagenin (4), to hydroxylated scaffolds commonly encountered in cane toad eggs and tadpoles. Scaled-up cultivation, preparative chromatography, and detailed spectroscopic analysis identified Bacillus sp. CMB-TD29 biotransformation products of 1, as 11α-hydroxymarinobufagenin (6), 12β-hydroxymarinobufagenin (7), and 17α-hydroxymarinobufagenin (8). Comparative bufagenin profiles across the cane toad life cycle suggest that bacterial biotransformation mediates the oxidative adaptation of adult toad bufagenins to hydroxylated bufagenins encountered in eggs and tadpoles. We speculate that knowledge of a relationship between the cane toad microbiome and bufagenin chemical defenses could inspire the development of a natural, nontoxic, environmentally sustainable bacterial biocontrol for this toxic invasive species.
- Published
- 2017
48. Chaunopyran A: Co-Cultivation of Marine Mollusk-Derived Fungi Activates a Rare Class of 2-Alkenyl-Tetrahydropyran
- Author
-
Zhuo Shang, Angela A. Salim, and Robert J. Capon
- Subjects
0301 basic medicine ,Antifungal ,Antifungal Agents ,medicine.drug_class ,Gastropoda ,Pharmaceutical Science ,Marine Biology ,Polyenes ,01 natural sciences ,Siphonaria ,Analytical Chemistry ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Biotransformation ,Drug Discovery ,Botany ,Pyridoxatin ,Trichoderma hamatum ,medicine ,Animals ,Pharmacology ,Marine biology ,Trichoderma ,biology ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Tetrahydropyran ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,Chaunopycnis sp ,Complementary and alternative medicine ,chemistry ,Mollusca ,Molecular Medicine - Abstract
Co-cultivation of Chaunopycnis sp. (CMB-MF028) and Trichoderma hamatum (CMB-MF030), fungal strains co-isolated from the inner tissue of an intertidal rock platform mollusc (Siphonaria sp), resulted in transcriptional activation of a rare class of 2-alkenyl-tetrahydropyran, chaunopyran A (7), and biotransformation and deactivation of the antifungal pyridoxatin (1), to methyl-pyridoxatin (8). This study illustrates the complexity of offensive and counter-offensive molecular defenses encountered during fungal co-cultivation, and the opportunities for activating new, otherwise transcriptionally silent secondary metabolites.
- Published
- 2017
49. Talarazines A-E: noncytotoxic iron(III) chelators from an Australian mud dauber wasp-associated fungus, Talaromyces sp (CMB-W045)
- Author
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Robert J. Capon, Breno Pannia Espósito, Michelle Quezada, and Pabasara Kalansuriya
- Subjects
0301 basic medicine ,Siderophore ,Stereochemistry ,Iron ,Wasps ,Siderophores ,Pharmaceutical Science ,NANOPARTÍCULAS ,Diketopiperazines ,Fungus ,Hydroxamic Acids ,01 natural sciences ,Analytical Chemistry ,Mud dauber ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Drug Discovery ,Botany ,Animals ,Chelation ,Nuclear Magnetic Resonance, Biomolecular ,Chelating Agents ,Pharmacology ,Molecular Structure ,biology ,010405 organic chemistry ,Organic Chemistry ,Australia ,Absolute configuration ,biology.organism_classification ,0104 chemical sciences ,Talaromyces sp. CMB-W045 ,030104 developmental biology ,Talaromyces ,Complementary and alternative medicine ,chemistry ,Molecular Medicine ,Desferricoprogen - Abstract
Chemical analysis of an Australian mud dauber wasp-associated fungus, Talaromyces sp. (CMB-W045), yielded five new coprogen siderophores, talarazines A–E (1–5), together with dimerumic acid (6), desferricoprogen (7), and elutherazine B (8). Structures inclusive of absolute configuration were assigned on the basis of detailed spectroscopic analysis and application of the C3 Marfey’s method. We report on the noncytotoxic Fe(III) chelation properties of 1–8 and demonstrate that biosynthesis is regulated by available Fe(III) in culture media. We demonstrate a magnetic nanoparticule approach to extracting high-affinity Fe(III) binding metabolites (i.e., 8) from complex extracts.
- Published
- 2017
50. Lamellarin O, a Pyrrole Alkaloid from an Australian Marine Sponge, Ianthella sp., Reverses BCRP Mediated Drug Resistance in Cancer Cells
- Author
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Xiao-Cong Huang, Robert J. Capon, Angela A. Salim, Yun-Kai Zhang, Xue Xiao, Tanaji T. Talele, and Zhe-Sheng Chen
- Subjects
Pharmaceutical Science ,ATP-binding cassette transporter ,Drug resistance ,Pharmacology ,P-glycoprotein ,Heterocyclic Compounds, 4 or More Rings ,Article ,Structure-Activity Relationship ,Coumarins ,multidrug resistance ,lamellarin O ,Drug Discovery ,ATP Binding Cassette Transporter, Subfamily G, Member 2 ,Animals ,Humans ,cancer ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,lcsh:QH301-705.5 ,biology ,Australia ,marine natural products ,ABC transporter ,BCRP ,MRP1 ,Fluoresceins ,Isoquinolines ,Drug Resistance, Multiple ,Neoplasm Proteins ,Porifera ,Multiple drug resistance ,Molecular Docking Simulation ,lcsh:Biology (General) ,Doxorubicin ,Drug Resistance, Neoplasm ,Cancer cell ,biology.protein ,ATP-Binding Cassette Transporters ,Efflux ,Pharmacophore ,Mitoxantrone ,Multidrug Resistance-Associated Proteins - Abstract
ATP binding cassette (ABC) transporters, such as P-gp, BCRP and MRP1, can increase efflux of clinical chemotherapeutic agents and lead to multi-drug resistance (MDR) in cancer cells. While the discovery and development of clinically useful inhibitors has proved elusive to date, this molecular target nevertheless remains a promising strategy for addressing and potentially overcoming MDR. In a search for new classes of inhibitor, we used fluorescent accumulation and efflux assays supported by cell flow cytometry and MDR reversal assays, against a panel of sensitive and MDR human cancer cell lines, to evaluate the marine sponge co-metabolites 1–12 as inhibitors of P-gp, BCRP or MRP1 initiated MDR. These studies identified and characterized lamellarin O (11) as a selective inhibitor of BCRP mediated drug efflux. A structure–activity relationship analysis inclusive of the natural products 1–12 and the synthetic analogues 13–19, supported by in silico docking studies, revealed key structural requirements for the lamellarin O (11) BCRP inhibitory pharmacophore.
- Published
- 2014
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