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Bovine mastitis is one of the most important economic and health issues in dairy farms. Data collection during routine recording procedures and access to large datasets have shed the light on the possibility to use trained machine learning algorithms to predict the udder health status of cows. In this study, we compared eight different machine learning methods (Linear Discriminant Analysis, Generalized Linear Model with logit link function, Naïve Bayes, Classification and Regression Trees, k-Nearest Neighbors, Support Vector Machines, Random Forest and Neural Network) to predict udder health status of cows based on somatic cell counts. Prediction accuracies of all methods were above 75%. According to different metrics, Neural Network, Random Forest and linear methods had the best performance in predicting udder health classes at a given test-day (healthy or mastitic according to somatic cell count below or above a predefined threshold of 200,000 cells/mL) based on the cow's milk traits recorded at previous test-day. Our findings suggest machine learning algorithms as a promising tool to improve decision making for farmers. Machine learning analysis would improve the surveillance methods and help farmers to identify in advance those cows that would possibly have high somatic cell count in the subsequent test-day.

Identifying genomic regions involved in the differences between breeds can provide information on genes that are under the influence of both artificial and natural selection. The aim of this study was to assess the genetic diversity and differentiation among four different Brown cattle populations (two original vs. two modern populations) and to characterize the distribution of runs of homozygosity (ROH) islands using the Illumina Bovine SNP50 BeadChip genotyping data. After quality control, 34 735 SNPs and 106 animals were retained for the analyses. Larger heterogeneity was highlighted for the original populations. Patterns of genetic differentiation, multidimensional scaling, and the neighboring joining tree distinguished the modern from the original populations. The F ST -outlier identified several genes putatively involved in the genetic differentiation between the two groups, such as stature and growth, behavior, and adaptability to local environments. The ROH islands within both the original and the modern populations overlapped with QTL associated with relevant traits. In modern Brown (Brown Swiss and Italian Brown), ROH islands harbored candidate genes associated with milk production traits, in evident agreement with the artificial selection conducted to improve this trait in these populations. In original Brown (Original Braunvieh and Braunvieh), we identified candidate genes related with fat deposition, confirming that breeding strategies for the original Brown populations aimed to produce dual-purpose animals. Our study highlighted the presence of several genomic regions that vary between Brown populations, in line with their different breeding histories., (© 2020 Stichting International Foundation for Animal Genetics.)

Sensor systems (SS) were developed over the last few decades to help dairy farmers manage their herds. Such systems can provide both data and alerts to several productive, behavioral, and physiological indicators on individual cows. Currently, there is still a lack of knowledge on both the proportion of dairy farms that invested in SS and type of SS installed. Additionally, it is still unclear whether the performances of herds equipped with SS differ from those of similar herds managed without any technological aid. Therefore, the aims of this study were (1) to provide an insight into SS spread among Italian dairy farms and (2) to analyze the performances of similar herds equipped or not equipped with SS. To reach the former goal, a large survey was carried out on 964 dairy farms in the northeast of Italy. Farmers were interviewed by the technicians of the regional breeders association to collect information on the type of SS installed on farms and the main parameters recorded. Overall, 42% of the surveyed farms had at least 1 SS, and most of them (72%) reared more than 50 cows. Sensors for measuring individual cow milk yield were the most prevalent type installed (39% of the surveyed farms), whereas only 15% of farms had SS for estrus detection. More sophisticated parameters, such as rumination, were automatically monitored in less than 5% of the farms. To reach the latter goal of the study, a subset of 100 Holstein dairy farms with similar characteristics was selected: half of them were equipped with SS for monitoring at least individual milk yield and estrus, and the other half were managed without any SS. Average herd productive and reproductive data from official test days over 3 yr were analyzed. The outcomes of the comparison showed that farms with SS had higher mature-equivalent milk production. Further clustering analysis of the same 100 farms partitioned them into 3 clusters based on herd productive and reproductive data. Results of the Chi-squared test showed that the proportion of farms equipped with SS was greater in the cluster with the best performance (e.g., higher milk yield and shorter calving interval). However, the presence of a few farms equipped with SS in the least productive cluster for the same parameters pointed out that although the installation of SS may support farmers in time- and labor-saving or in data recording, it is not a guarantee of better herd performance., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).)

Milk urea nitrogen (MUN), a trait routinely measured in the national milk recording system, is a useful indicator of nitrogen utilization efficiency of dairy cows, and selection for MUN and MUN-derived traits could be a valid strategy to produce better animals with regard to efficiency of nitrogen utilization. Therefore, the aim of the present study was to explore the genetic aspects of MUN and new potential indicators of nitrogen efficiency, namely ratios of protein to MUN, casein to MUN, and whey protein to MUN, in the Italian Brown Swiss population. A total of 153,175 test-day records of 10,827 cows in 500 herds were used for genetic analysis. Variance components and heritability of the investigated traits were estimated using single-trait repeatability animal models, whereas genetic and phenotypic correlations between the traits were estimated through bivariate repeatability animal models, including fixed effects of herd-test-date, stage of lactation, parity, calving year, and calving season, and the random effects of additive genetic animal, cow permanent environment, and the residual. Heritability estimates for MUN (0.20 ± 0.01) and the 3 new indicators of nitrogen utilization efficiency (0.15 ± 0.01 for protein-to-MUN and casein-to-MUN ratios, and 0.12 ± 0.01 for ratio of whey protein to MUN) suggested that additive genetic variation exists for these traits, and thus there is potential to select for greater organic nitrogen and lower inorganic nitrogen in milk. Genetic association between MUN and the 3 ratios was high (-0.87 ± 0.01) but not unity, suggesting that ratios could provide some further information beyond that provided by MUN with regard to efficiency of nitrogen utilization. Genetic trend of the investigated traits by year of birth of Brown Swiss sires showed how the selection applied in the last 30 yr has led to an increase of both quantity and quality of milk, and a decrease of somatic cell score and MUN. The inclusion of MUN in breeding programs could speed up the process of increasing organic nitrogen such as protein, which is useful for cheese-making, and reducing inorganic nitrogen (MUN) in milk., (Copyright © 2020 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

It is known that heat stress affects dairy cow performance in multiple ways: physiological, behavioral, reproductive, and productive. The aim of the present study was to determine if a threshold of temperature-humidity index (THI) exists for multiple milk production traits (milk yield, fat-corrected milk, protein and fat yield and percentage, energy-corrected milk, cheese production, and cheese yield) in Italian Brown Swiss dairy cows from the period 15 d before the day of the Italian Breeders Association test-day sampling. A 10-yr data set (2009-2018) containing 202,776 test-day records of 23,296 Brown Swiss cows was matched with the maximum THI. In all parities considered, no THI thresholds were observed for milk yield in Brown Swiss. In contrast, a THI threshold of 75 was identified for fat-corrected milk. No THI threshold was found for fat percentage, but fat yield showed the highest THI thresholds in cows of first and second parity. Protein yield and cheese production were affected by heat stress with average THI threshold of 74. The THI thresholds identified indicate that the Brown Swiss breed has higher thermal tolerance versus literature values reported for Holstein cows. As THI rises, Brown Swiss cows tend to produce the same volume of milk, but with a decreasing quality with regard to components. Further study is necessary to estimate the genetic component of heat tolerance, in Brown Swiss cattle, considering that the correct estimation of THI thresholds represents the first step to identify components that could be included in selection procedures., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).)

Background: Assessment of genetic diversity and population structure provides important control metrics to avoid genetic erosion, inbreeding depression and crossbreeding between exotic and locally-adapted cattle breeds since these events can have deleterious consequences and eventually lead to extinction. Historically, the Alpine Arc represents an important pocket of cattle biodiversity with a large number of autochthonous breeds that provide a fundamental source of income for the entire regional economy. By using genotype data from medium-density single nucleotide polymorphism (SNP) arrays, we performed a genome-wide comparative study of 23 cattle populations from the Alpine Arc and three cosmopolitan breeds., Results: After filtering, we obtained a final genotyping dataset consisting of 30,176 SNPs for 711 individuals. The local breeds showed high or intermediate values of genetic diversity compared to the highly selected cosmopolitan breeds. Patterns of genetic differentiation, multidimensional scaling, admixture analysis and the constructed phylogenetic tree showed convergence, which indicates the presence of gene flow among the breeds according to both geographic origin and historical background. Among the most differentiated breeds, we identified the modern Brown cattle. In spite of admixture events, several local breeds have preserved distinctive characteristics, which is probably due to differences in genetic origin and geographic location., Conclusions: This study represents one of the most comprehensive genome-wide analysis of the Alpine cattle breeds to date. Using such a large dataset that includes the majority of the local breeds found in this region, allowed us to expand knowledge on the evaluation and status of Alpine cattle biodiversity. Our results indicate that although many of the analyzed local breeds are listed as endangered, they still harbor a large amount of genetic diversity, even when compared to some cosmopolitan breeds. This finding, together with the reconstruction of the phylogeny and the relationships between these Alpine Arc cattle breeds, provide crucial insights not only into the improvement of genetic stocks but also into the implementation of future conservation strategies.

The aim of the present study was to assess the relationships of lactose percentage (LP), lactose yield (LY), and freezing point (FRP) with minerals and coagulation properties predicted from mid-infrared spectra in bovine milk. To achieve this purpose, we analyzed 54,263 test-day records of 4,297 Holstein cows to compute (co)variance components with a linear repeatability animal model. Parity, stage of lactation, season of calving, and herd-test-date were included as fixed effects in the model, and additive genetic animal, within- and across-lactation permanent environment, and residual were included as random effects. Lactose percentage was more heritable (0.405 ± 0.027) than LY (0.121 ± 0.021) and FRP (0.132 ± 0.014). Heritabilities (± standard error) of predicted milk minerals varied from 0.375 ± 0.027 for Na to 0.531 ± 0.028 for P, and those of milk coagulation properties ranged from 0.348 ± 0.052 for rennet coagulation time to 0.430 ± 0.026 for curd firming time. Lactose percentage showed favorable (negative) genetic correlations with milk somatic cell score (SCS) and FRP, and it was almost uncorrelated with casein-related minerals (Ca and P) and coagulation properties. Moreover, LP was strongly correlated with Na (-0.783 ± 0.022), a mineral known to increase in the presence of intramammary infection (IMI) and high somatic cell count. Indeed, Na is the main osmotic replacer of lactose in mastitic milk when the blood-milk barrier is altered during IMI. Being strongly associated with milk yield, LY did not favorably correlate with coagulation properties, likely because of the negative correlation of this trait with protein and casein percentages. Milk FRP presented moderate and null genetic associations with Na and SCS, respectively. Results of the present study suggest that the moderate heritability of LP and its genetic correlations with IMI-related traits (Na and SCS) could be exploited for genetic selection against mastitis. Moreover, selection for LP would not impair milk coagulation characteristics or Ca and P content, which are important for cheesemaking., (Copyright © 2019 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of this study was to estimate genetic associations between alternative somatic cell count (SCC) traits and milk yield, composition and udder type traits in Italian Jersey cows. Alternative SCC traits were test-day (TD) somatic cell score (SCS) averaged over early lactation (SCS_150), standard deviation of SCS of the entire lactation (SCS_SD), a binary trait indicating absence or presence of at least one TD SCC >400,000 cells/ml in the lactation (Infection) and the ratio of the number of TD SCC >400,000 cells/ml to total number of TD in the lactation (Severity). Heritabilities of SCC traits, including lactation-mean SCS (SCS_LM), ranged from 0.038 to 0.136. Genetic correlations between SCC traits were moderate to strong, with very few exceptions. Unfavourable genetic associations between milk yield and SCS_SD and Infection indicated that high-producing cows were more susceptible to variation in SCC than low-producing animals. Cows with deep udders, loose attachments, weak ligaments and long teats were more susceptible to an increase of SCC in milk. Overall, results suggest that alternative SCC traits can be exploited to improve cow's resistance to mastitis in Italian Jersey breed., (© 2019 Japanese Society of Animal Science.)

Adequate milk consumption significantly contributes to meeting the human iodine recommended daily intake, which ranges from 70 µg/d for infants to 200 µg/d for lactating women. The fulfilment of iodine recommended daily intake is fundamental to prevent serious clinical diseases such as cretinism in infants and goiter in adults. In the present study iodine content was measured in raw and processed commercial cow milk, as well as in raw buffalo, goat, sheep, and donkey milk. Iodine extraction was based on 0.6% (vol/vol) ammonia, whereas iodine detection and quantification were carried out through an inductively coupled plasma mass spectrometer analyzer. Among processed commercial cow milk, partially skimmed pasteurized milk had the greatest iodine content (359.42 µg/kg) and raw milk the lowest (166.92 µg/kg). With regard to the other dairy species, the greatest iodine content was found in raw goat milk (575.42 µg/kg), followed by raw buffalo (229.82 µg/kg), sheep (192.64 µg/kg), and donkey milk (7.06 µg/kg). Repeatability of milk iodine content, calculated as relative standard deviation of 5 measurements within a day or operator, ranged from 0.96 to 1.84% and 0.72 to 1.16%, respectively. The overall reproducibility of milk iodine content, calculated as relative standard deviation of 45 measurements across 3 d of analyses and 3 operators, was 4.01%. These results underline the precision of the proposed analytical method for the determination of iodine content in milk., (Copyright © 2019 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of the present study was to assess genetic variation and heritability of a novel indicator of udder health, milk differential somatic cell count (DSCC), which represents the percentage of neutrophils plus lymphocytes in the total somatic cell count (SCC). Furthermore, we estimated genetic and phenotypic correlations of DSCC with other milk traits routinely measured in Italian Holstein cows. Besides DSCC, test-day data included milk yield, composition traits (i.e., fat, protein, casein, and lactose percentages), pH, milk urea nitrogen, and SCC. After editing, the final data set included 10,709 test-day records of 5,142 cows in 299 herds. Mean of DSCC was 62.07%, which means that macrophages were approximately 38% of total SCC. Comparing our results with the literature offered compelling evidence of the importance of acquiring information about the proportion of the different cell types in milk to better define the udder health status. In addition, our analysis revealed, for the first time, that DSCC is a heritable trait, and heritability (0.08 ± 0.02) was higher than that of traditional somatic cell score (0.04 ± 0.02). Nevertheless, heritability of DSCC is still low compared with milk yield and quality traits. Single-trait analysis within parity showed that DSCC was less heritable in primiparous than in multiparous cows, whereas bivariate analysis confirmed that DSCC and somatic cell score were 2 different traits, as their genetic and phenotypic correlations differed from unity. From a genetic point of view, the DSCC was positively weakly associated with milk yield, lactose percentage, and milk urea nitrogen, and negatively associated with pH. Our findings contributed to the understanding of the genetic background of DSCC and are a precursor to the potential use of DSCC in breeding programs to enhance cow resistance to mastitis. However, further research is needed to determine the weight this novel trait should receive in a selection program aimed to reduce udder health problems., (Copyright © 2019 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

Lactose percentage (LP) in milk is currently determined in most herd-testing schemes, and globally, it is usually routinely recorded in the framework of the official milk recording procedures. However, few studies have investigated the phenotypic and genetic variability of this component. Data used in the present paper consisted of 59 811 test-day records from 4355 Holstein cows in 266 herds. Heritabilities of LP and lactose yield (LY) were estimated through single-trait repeatability animal models, whereas genetic and phenotypic correlations of LP and LY with milk composition and production traits, somatic cell score and milk freezing point were estimated using bivariate models. Fixed effects included in the analyses were herd-test-date, season of calving, parity, stage of lactation and the interaction between parity and stage of lactation. Random effects were animal additive genetic, within and across lactation permanent environment and the residual. Lactation curves of LP and LY increased from parturition to the peak of lactation and decreased thereafter, mirroring the typical curve of milk yield. Lactose percentage was greater in first- than later-parity cows. Heritabilities of LP and LY were 0.43±0.03 and 0.14±0.02, respectively, and LP and protein percentage were the most repeatable traits. Genetic correlations (r a) of LP with somatic cell score, LY and milk freezing point were -0.22±0.08, 0.28±0.08 and -0.46±0.05, respectively. Genetic relationships of LY with milk yield (r a=0.97±0.00), fat percentage (r a=-0.71±0.06), protein percentage (r a=-0.57±0.06) and protein yield (r a=0.64±0.06) were moderate to strong. Results suggest that milk LP could be considered in breeding strategies to accelerate the gain of correlated low heritable traits. Further research is needed to evaluate the feasibility of including LP in the selection index of Italian Holstein population to address country-specific needs and market demands.

Milk mineral concentration is important from both the perspective of processing milk into dairy products and its nutritive value for human consumption. Precise estimates of genetic parameters for milk mineral concentration are lacking because of the considerable resources required to collect vast phenotypes quantities. The milk concentration of calcium (Ca), potassium (K), magnesium (Mg), sodium (Na) and phosphorus (P) in the present study was quantified from mid-IR spectroscopy on 12 223 test-day records from 1717 Holstein-Friesian cows. (Co)variance components were estimated using random regressions to model both the additive genetic and within-lactation permanent environmental variances of each trait. The coefficient of genetic variation averaged across days-in-milk (DIM) was 6.93%, 3.46%, 6.55%, 5.20% and 6.68% for Ca, K, Mg, Na and P concentration, respectively; heritability estimates varied across lactation from 0.31±0.05 (5 DIM) to 0.67±0.04 (181 DIM) for Ca, from 0.18±0.03 (60 DIM) to 0.24±0.05 (305 DIM) for K, from 0.08±0.03 (15 DIM) to 0.37±0.03 (223 DIM) for Mg, from 0.16±0.03 (30 DIM) to 0.37±0.04 (305 DIM) for Na and from 0.21±0.04 (12 DIM) to 0.57±0.04 (211 DIM) for P. Genetic correlations within the same trait across different DIM were almost unity between adjacent DIM but weakened as the time interval between pairwise compared DIM lengthened; genetic correlations were weaker than 0.80 only when comparing both peripheries of the lactation. The analysis of the geometry of the additive genetic covariance matrix revealed that almost 90% of the additive genetic variation was accounted by the intercept term of the covariance functions for each trait. Milk protein concentration and mineral concentration were, in general, positively genetically correlated with each other across DIM, whereas milk fat concentration was positively genetically correlated throughout the entire lactation with Ca, K and Mg; the genetic correlation with fat concentration changed from negative to positive with Na and P at 243 DIM and 50 DIM, respectively. Genetic correlations between somatic cell score and Na ranged from 0.38±0.21 (5 DIM) to 0.79±0.18 (305 DIM). Exploitable genetic variation existed for all milk minerals, although many national breeding objectives are probably contributing to an indirect positive response to selection in milk mineral concentration.

The aim of the present study was to characterize alternative somatic cell count (SCC) traits that could be exploited in genetic selection for mastitis resistance. Data were from 66,407 first-parity Holsteins in 404 herds. Novel SCC traits included average somatic cell score (SCS, log-transformation of SCC) in early lactation (SCS_150), standard deviation of SCS of the entire lactation (SCS_SD), the presence of at least one test-day (TD) SCC >400,000 cells/mL in the lactation, and the ratio of number of TD SCC >400,000 cells/mL to total number of TD in the lactation. Novel traits and lactation-mean SCS (SCS_LM) were analyzed using linear mixed or logistic regression models, including month of calving, year of calving, number of TD, and milk yield as fixed effects, and herd and residual as random terms. A multitrait linear animal model was applied to a random subset of 152 herds (n = 22,695 cows) to assess heritability of and genetic correlations between SCC traits. Alternative SCC traits were affected by the environmental factors included in the model; in particular, results suggested a seasonal effect and a tendency toward an improvement of the udder health status in the last years. Association was also found between novel SCC traits and milk production. Alternative SCC traits exhibited coefficients of additive genetic variation that were similar to or larger than that of traditional SCS_LM. Heritability of novel SCC traits was smaller than heritability of SCS_LM (0.126 ± 0.014), ranging from 0.044 ± 0.008 (SCS_SD) to 0.087 ± 0.010 (SCS_150). Genetic correlations between SCC traits ranged from 0.217 ± 0.096 (SCS_150 and SCS_SD) to 0.969 ± 0.010 (SCS_LM and SCS_150). Alternative SCC traits exhibited additive genetic variation that is potentially exploitable in breeding programs of Italian Holstein population to improve resistance to mastitis., (Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of the present study was to determine the allele frequencies of the diacylglycerol acyltransferase (DGAT1) K232A mutation in Italian Holstein bulls and to estimate the effect of the mutation on milk yield, composition, somatic cell score, and coagulation traits (rennet coagulation time and curd firmness). For this purpose, 349 Italian Holstein bulls were genotyped for the DGAT1 mutation on chromosome 14. Association analysis was performed by regressing the number of copies for the K allele on the deregressed estimated breeding value of the individual. Breeding values were calculated using field data routinely collected in Northeast Italy. The frequencies of the AA, KA, and KK genotypes were 59.6, 32.1, and 8.3%, respectively, and the minor allele frequency (K variant) was 24.7%. The K allele was significantly associated with greater fat yield and fat, protein, and casein percentages and with reduced protein:fat ratio. The association between the DGAT1 mutation and somatic cell score was not significant, whereas a favorable association between presence of the K allele and milk coagulation properties was found. Results from the present study confirmed the effect of the diallelic DGAT1 polymorphism K232A on milk production traits and, for the first time, provided evidence that this mutation also affects milk coagulation properties in the Italian Holstein breed., (Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The economic values (EV) of production traits, rennet coagulation time (RCT, min), and curd firmness (a30, mm) were derived for Italian Holstein-Friesian dairy cattle, based on the Grana Padano cheese industry. Three different sets of EV for RCT and a30 were estimated, assuming +2.5% (scenario 1), +5% (scenario 2), and +10% (scenario 3) increment in cheese yield due to the effect of milk coagulation properties (MCP). A model was developed to simulate the transformation of milk into Grana Padano cheese. The EV of RCT and a30 were -€2.213, -€4.426, and -€8.852/min, and €0.877, €1.755, and €3.509/mm for scenarios 1, 2, and 3, respectively. Relative emphasis of traits in the breeding objectives of the Italian Holstein-Friesian dairy cattle population should account for the effect of MCP on cheese yield. Economic values for milk components and MCP were affected by changes of dairy products, whereas variations of feed prices did not influence EV of RCT and a30., (Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of the present study was to estimate genetic parameters for calcium (Ca), phosphorus (P) and titratable acidity (TA) in bovine milk predicted by mid-IR spectroscopy (MIRS). Data consisted of 2458 Italian Holstein-Friesian cows sampled once in 220 farms. Information per sample on protein and fat percentage, pH and somatic cell count, as well as test-day milk yield, was also available. (Co)variance components were estimated using univariate and bivariate animal linear mixed models. Fixed effects considered in the analyses were herd of sampling, parity, lactation stage and a two-way interaction between parity and lactation stage; an additive genetic and residual term were included in the models as random effects. Estimates of heritability for Ca, P and TA were 0.10, 0.12 and 0.26, respectively. Positive moderate to strong phenotypic correlations (0.33 to 0.82) existed between Ca, P and TA, whereas phenotypic weak to moderate correlations (0.00 to 0.45) existed between these traits with both milk quality and yield. Moderate to strong genetic correlations (0.28 to 0.92) existed between Ca, P and TA, and between these predicted traits with both fat and protein percentage (0.35 to 0.91). The existence of heritable genetic variation for Ca, P and TA, coupled with the potential to predict these components for routine cow milk testing, imply that genetic gain in these traits is indeed possible.

Milk coagulation properties (MCP) are gaining popularity among dairy cattle producers and the improvement of traits associated with MCP is expected to result in a benefit for the dairy industry, especially in countries with a long tradition in cheese production. The objectives of this study were to estimate genetic correlations of MCP with body condition score (BCS) and type traits using data from first-parity Italian Holstein-Friesian cattle. The data analyzed consisted of 18,460 MCP records from 4,036 cows with information on both BCS and conformation traits. The cows were daughters of 246 sires and the pedigree file included a total of 37,559 animals. Genetic relationships of MCP with BCS and type traits were estimated using bivariate animal models. The model for MCP included fixed effects of stage of lactation, and random effects of herd-test-date, cow permanent environment, additive genetic animal, and residual. Fixed factors considered in the model for BCS and type traits were herd-date of evaluation and interaction between age at scoring and stage of lactation of the cow, and random terms were additive genetic animal, cow permanent environment, and residual. Genetic relationships between MCP and BCS, and MCP and type traits were generally low and significant only in a few cases, suggesting that MCP can be selected for without detrimental effects on BCS and linear type traits., (Copyright © 2015 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

Interest in methods that routinely and accurately measure and predict animal characteristics is growing in importance, both for quality characterization of livestock products and for genetic purposes. Mid-infrared spectroscopy (MIRS) is a rapid and cost-effective tool for recording phenotypes at the population level. Mid-infrared spectroscopy is based on crossing matter by electromagnetic radiation and on the subsequent measure of energy absorption, and it is commonly used to determine traditional milk quality traits in official milk laboratories. The aim of this review was to focus on the use of MIRS to predict new milk phenotypes of economic relevance such as fatty acid and protein composition, coagulation properties, acidity, mineral composition, ketone bodies, body energy status, and methane emissions. Analysis of the literature demonstrated the feasibility of MIRS to predict these traits, with different accuracies and with margins of improvement of prediction equations. In general, the reviewed papers underlined the influence of data variability, reference method, and unit of measurement on the development of robust models. A crucial point in favor of the application of MIRS is to stimulate the exchange of data among countries to develop equations that take into account the biological variability of the studied traits under different conditions. Due to the large variability of reference methods used for MIRS calibration, it is essential to standardize the methods used within and across countries., (Copyright © 2014 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of this study was to estimate (co)variance components for milk coagulation properties (MCP) predicted by mid-infrared spectroscopy (MIRS) during routine milk recording, and to assess their relationships with yield and quality traits. A total of 63 470 milk samples from Holstein-Friesian cows were analyzed for MCP, pH and quality characteristics using MIRS. Casein to protein and protein to fat ratios were calculated from information obtained by MIRS. Records were collected across 1 year on 16 089 cows in 345 herds. The model used for genetic analysis included fixed effects of parity and stage of lactation, and random effects of herd-test-day, cow permanent environmental, animal additive genetic and residual. (Co)variance components were assessed in a Bayesian framework using the Gibbs Sampler. Estimates of heritabilities were consistent with those reported in the literature, being moderate for MCP (0.210 and 0.238 for rennet coagulation time (RCT) and curd firmness (a30), respectively), milk contents (0.213 to 0.333) and pH (0.262), and low for somatic cell score (0.093) and yield traits (0.098 to 0.130). Repeatabilities were 0.391 and 0.434 for RCT and a30, respectively, and genetic correlations were generally low, with estimates greater than 0.30 (in absolute value) only for a30 with fat, protein and casein contents. Overall, results suggest that genetic evaluation for MCP predicted by MIRS is feasible at population level, and several repeated measures per cow during a lactation are required to estimate reliable breeding values for coagulation traits.

The objectives of this research were to estimate genetic parameters for body condition score (BCS) and locomotion (LOC), and to assess their relationships with angularity (ANG), milk yield, fat and protein content, and fat to protein content ratio (F:P) in the Italian Holstein Friesian breed. The Italian Holstein Friesian Cattle Breeders Association collects type trait data once on all registered first lactation cows. Body condition score and LOC were introduced in the conformation scoring system in 2007 and 2009, respectively. Variance (and covariance) components among traits were estimated with a Bayesian approach via a Gibbs sampling algorithm and an animal model. Heritability estimates were 0.114 and 0.049 for BCS and LOC, respectively. The genetic correlation between BCS and LOC was weak (-0.084) and not different from zero; therefore, the traits seem to be genetically independent, but further investigation on possible departures from linearity of this relationship is needed. Angularity was strongly negatively correlated with BCS (-0.612), and strongly positively correlated with LOC (0.650). The genetic relationship of milk yield with BCS was moderately negative (-0.386), and was moderately positive (0.238) with LOC. These results indicate that high-producing cows tend to be thinner and tend to have better locomotion than low-producing cows. The genetic correlation of BCS with fat content (0.094) and F:P (-0.014) was very weak and not different from zero, and with protein content (0.173) was weak but different from zero. Locomotion was weakly correlated with fat content (0.071), protein content (0.028), and F:P (0.074), and correlations were not different from zero. Phenotypic correlations were generally weaker than their genetic counterparts, ranging from -0.241 (BCS with ANG) to 0.245 (LOC with ANG). Before including BCS and LOC in the selection index of the Italian Holstein breed, the correlations with other traits currently used to improve type and functionality of animals need to be investigated., (Copyright © 2013 Elsevier Masson SAS. All rights reserved.)

The study documents the procedures used to estimate genetic correlations among countries for overall conformation (OCS), overall udder (OUS), overall feet and legs (OFL), and body condition score (BCS) of Holstein sires. Major differences in traits definition are discussed, in addition to the use of international breeding values (IBV) among countries involved in international genetic evaluations, and similarities among countries through hierarchical clustering. Data were available for populations from 20 countries for OCS and OUS, 18 populations for OFL, and 11 populations for BCS. The IBV for overall traits and BCS were calculated using a multi-trait across-country evaluation model. Distance measures, obtained from genetic correlations, were used as input values in the cluster analysis. Results from surveys sent to countries participating in international genetic evaluation for conformation traits showed that different ways of defining traits are used: the overall traits were either computed from linear or composite traits or defined as general characteristics. For BCS, populations were divided into 2 groups: one scored and evaluated BCS, and one used a best predictor. In general, populations were well connected except for Estonia and French Red Holstein. The average number of common bulls for the overall traits ranged from 19 (OCS and OUS of French Red Holstein) to 514 (OFL of United States), and for BCS from 17 (French Red Holstein) to 413 (the Netherlands). The average genetic correlation (range) across countries was 0.75 (0.35 to 0.95), 0.80 (0.41 to 0.95), and 0.68 (0.12 to 0.89) for OCS, OUS, and OFL, respectively. Genetic correlations among countries that used angularity as best predictor for BCS and countries that scored BCS were negative. The cluster analysis provided a clear picture of the countries distances; differences were due to trait definition, trait composition, and weights in overall traits, genetic ties, and genotype by environment interactions. Harmonization of trait definition and increasing genetic ties could improve genetic correlations across countries and reduce the distances. In each national selection index, all countries, except Estonia and New Zealand, included at least one overall trait, whereas none included BCS. Out of 18 countries, 9 have started genomic evaluation of conformation traits. The first were Canada, France, New Zealand, and United States in 2009, followed by Switzerland, Germany, and the Netherlands in 2010, and Australia and Denmark-Finland-Sweden (joint evaluation) in 2011. Six countries are planning to start soon., (Copyright © 2012 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of this study was to estimate genetic parameters for type traits of hypertrophic Piemontese cows. Seven traditional type trait evaluations (70 to 100 grid scores), 2 body measurements (cm), and 13 linear description traits (1 to 9 grid scores) recorded on 21,757 Piemontese primiparous cows reared in 990 farms were used. Data were analyzed using a multiple-trait (22 traits) animal model with canonical transformation, accounting for a unique design matrix with the following effects: herd-year-classifier, days in milk, age at calving, and the genetic additive cow effect. Heritability estimates of traditional type evaluation traits were low for thorax, rump, feet and legs, and dairyness (≤0.10), intermediate for fleshiness and overall score evaluations (0.13 to 0.15), and medium to high for body size (0.26). Genetic correlations of dairyness with all the other traditional type traits were low (from -0.14 to 0.16), those of feet and legs were moderate (0.19 to 0.44), and the remaining 5 traits were high (≥0.55), with an exception regarding fleshiness and body size (0.28). Medium-high heritability estimates were obtained for withers height (0.31) and trunk length (0.21), with a very high genetic correlation between these traits (0.97). The genetic correlations of body measurements with body size were also very high (about 0.96), high with thorax, rump, and overall score (0.47 to 0.59), and moderate with the other traditional type traits (0.04 to 0.27). Heritability estimates of all linear traits were moderate (0.09 to 0.15), with the exceptions of top line (0.07) and condition score (0.05). Genetic correlations between linear traits were generally low to moderate (from -0.11 to 0.44) with the only exceptions of the 6 fleshiness traits and body condition, which showed very high correlations (0.60 to 0.96). Moreover, skeletal traits as top line, bone thinness, and head scores presented moderate genetic correlations (0.51 to 0.65). Genetic correlations between linear traits and traditional type traits were consistent with the trend observed between type traits. In conclusion, body measurements seem to describe body size better than traditional evaluation or linear descriptors. The genetic correlations among type evaluation and linear description traits suggest the need for a reduction in the number of traits scored, particularly of those relating to muscular development.

The aim of the study was to assess crossbreeding effects for 305-day milk, fat, and protein yield and calving interval (CI) in Irish dairy cows (parities 1 to 5) calving in the spring from 2002 to 2006. Data included 188,927 records for production traits and 157,117 records for CI. The proportion of genes from North American Holstein Friesian (HO), Friesian (FR), Jersey (JE) and Montbéliarde (MO) breeds, and coefficients of expected heterosis for HOxFR, HOxJE and HOxMO crosses were calculated from the breed composition of cows' parents. The model used to assess crossbreeding effects accounted for contemporary group, age at calving within parity, linear regression on gene proportions for FR, JE and MO, and linear regression on coefficients of expected heterosis for HOxFR, HOxJE and HOxMO, as fixed effects, and additive genetic, permanent environmental and residual as random. Breed effects for production traits were in favour of HO, while for CI were in favour of breeds other than HO. The highest heterosis estimates for production were for HOxJE, with first-generation crosses yielding 477 kg more milk, 25.3 kg more fat, and 17.4 kg more protein than the average of the parental breeds. The highest estimate for CI was for HOxMO, with first-generation crosses showing 10.2 days less CI than the average of the parental breeds. Results from this study indicate breed differences and specific heterosis effects for milk yield traits and fertility exist in Irish dairy population.

The aim of the study was to quantify the effects of composite beta- and kappa-casein (CN) genotypes on genetic variation of milk coagulation properties (MCP); milk yield; fat, protein, and CN contents; somatic cell score; pH; and titratable acidity (TA) in 1,042 Italian Holstein-Friesian cows. Milk coagulation properties were defined as rennet coagulation time (RCT) and curd firmness (a(30)). Variance components were estimated using 2 animal models: model 1 included herd, days in milk, and parity as fixed effects and animal and residual as random effects, and model 2 was model 1 with the addition of composite beta- and kappa-CN genotype as a fixed effect. Genetic correlations between RCT and a(30) and between these traits and milk production traits were obtained with bivariate analyses, based on the same models. The inclusion of casein genotypes led to a decrease of 47, 68, 18, and 23% in the genetic variance for RCT, a(30), pH, and TA, respectively, and less than 6% for other traits. Heritability of RCT and a(30) decreased from 0.248 to 0.143 and from 0.123 to 0.043, respectively. A moderate reduction was found for pH and TA, whereas negligible changes were detected for other milk traits. Estimates of genetic correlations were comparable between the 2 models. Results show that composite beta- and kappa-CN genotypes are important for RCT and a(30) but cannot replace the recording of MCP themselves., (Copyright (c) 2010 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.)

The aim of the study was to infer (co)variance components for daily milk yield, fat and protein contents, and somatic cell score (SCS) in Burlina cattle (a local breed in northeast Italy). Data consisted of 13,576 monthly test-day records of 666 cows (parities 1 to 8) collected in 10 herds between 1999 and 2009. Repeatability animal models were implemented using Bayesian methods. Flat priors were assumed for systematic effects of herd test date, days in milk, and parity, as well as for permanent environmental, genetic, and residual effects. On average, Burlina cows produced 17.0 kg of milk per day, with 3.66 and 3.33 percent of fat and protein, respectively, and 358,000 cells per mL of milk. Marginal posterior medians (highest posterior density of 95%) of heritability were 0.18 (0.09-0.28), 0.28 (0.21-0.36), 0.35 (0.25-0.49), and 0.05 (0.01-0.11) for milk yield, fat content, protein content, and SCS, respectively. Marginal posterior medians of genetic correlations between the traits were low and a 95 percent Bayesian confidence region included zero, with the exception of the genetic correlation between fat and protein contents. Despite the low number of animals in the population, results suggest that genetic variance for production and quality traits exists in Burlina cattle.

The aim of this study was to investigate the effect of different breeds and breed crosses on age (AC, d), BW (kg), price (PR, $/kg), and market value (MV, $/calf) of purebred and crossbred calves sold for veal and beef production. The Kovieh wholesale cattle organization (Bolzano, Italy) grouped calves from several dairy herds located in the Trentino-Südtirol region in Italy and sold them by public auctions. Data on AC, BW, PR, and MV from 96,458 calves were recorded from January 2003 to December 2007 and consisted of 4 pure breeds [2 dairy, Brown Swiss (BS) and Holstein-Friesian (HF); and 2 dual-purpose, Simmental (SI) and Alpine Grey (AG)], and 8 crossbreds by crosses of Limousin (LI) and Belgian Blue (BB) with the 4 dam breeds. Least squares means for AC, BW, PR, and MV were calculated for breeds and breed crosses with a model that included fixed effects of herd of birth, age (except for AC), sex, and breed of the calf, year and season of auction, and interactions between the main effects. The coefficients of determination of the models were 0.41, 0.51, 0.84, and 0.82 for AC, BW, PR, and MV, respectively. Sex, age, and breed were the most relevant sources of variation for BW (P < 0.001), whereas breed and sex were the most important sources of variation for AC, PR, and MV (P < 0.001). Also, PR and MV were significantly influenced (P < 0.01) by all the effects included in the model, except for season x age interaction in the case of MV. Market value of male was greater (P < 0.001) than that of female calves, with the exception of BS (-$28.76/calf) and HF (-$20.70/calf) purebred males. Dual-purpose purebred calves presented greater (P < 0.001) PR and MV than dairy purebreds (MV of $426.97/calf and $307.96/calf for SI and AG, and $256.24/calf and $275.65/calf for BS and HF, respectively). Calves from SI and AG dams had greater (P < 0.001) BW, PR, and MV than calves from BS and HF dams. Calves from SI cows had greater (P < 0.001) BW, PR, and MV than calves from AG cows. Crossbreeding with beef bulls increased (P < 0.001) BW, PR, and MV of calves from dairy and dual-purpose dams. Crossbreeding with BB bulls increased PR (+$2.58 +/- 0.04/kg; P < 0.001) and MV (+$190.84 +/- 3.62/calf; P < 0.001) of calves much more than LI. The use of beef bull semen on dairy herds resulted in an economic revenue from selling crossbred calves.

The objective of this study was to estimate genetic parameters for conjugated linoleic acid (CLA) and other selected milk fatty acid (FA) content and for unsaturation ratios in the Italian Holstein Friesian population. Furthermore, the relationship of milk FA with milk fat and protein content was considered. One morning milk sample was collected from 990 Italian Holstein Friesian cows randomly sampled from 54 half-sib families, located in 34 commercial herds in the North-eastern part of Italy. Each sample was analyzed for milk percentages of fat and protein, and for single FA percentages (computed as FA weight as a proportion of total fat weight). Heritabilities were moderate for unsaturated FA, ranging from 0.14 for C16:1 to 0.19 for C14:1. Less than 10% of heritability was estimated for each saturated FA content. Heritability for index of desaturation, monounsaturated FA and CLA/trans-11 18:1 ratio were 0.15, 0.14, and 0.15, respectively. Standard errors of the heritability values ranged from 0.02 to 0.06. Genetic correlations were high and negative between C16:0 and C18:0, as well as between C14:0 and C18:0. Genetic correlations of index of desaturation were high and negative with C14:0 and C16:0 (-0.70 and -0.72, respectively), and close to zero (0.03) with C18:0. The genetic correlation of C16:0 with fat percentage was positive (0.74), implying that selection for fat percentage should result in a correlated increase of C16:0, whereas trans-11 C18:1 and cis-9, trans-11 C18:2 contents decreased with increasing fat percentage (-0.69 and -0.55, respectively). Genetic correlations of fat percentage with 14:1/14 and 16:1/16 ratios were positive, whereas genetic correlations of fat percentage with 18:1/18 and CLA/trans-11 18:1 ratios were negative. These results suggest that it is possible to change the milk FA composition by genetic selection, which offers opportunities to meet consumer demands regarding health aspects of milk and dairy products.

The aim of the study was to estimate the effect of the composite CSN2 and CSN3 genotypes on milk coagulation, quality, and yield traits in Italian Holstein cows. A total of 1,042 multiparous Holstein cows reared on 34 commercial dairy herds were sampled once, concurrently with monthly herd milk recording. The data included the following traits: milk coagulation time; curd firmness; pH and titratable acidity; fat, protein, and casein contents; somatic cell score; and daily milk, fat, and protein yields. A single-trait animal model was assumed with fixed effects of herd, days in milk, parity, composite casein genotype of CSN2 and CSN3 (CSN2-CSN3), and random additive genetic effect of an animal. The composite genotype of CSN2-CSN3 showed a strong effect on both milk coagulation traits and milk and protein yields, but not on fat and protein contents and other milk quality traits. For coagulation time, the best CSN2-CSN3 genotypes were those with at least one B allele in both the CSN2 and CSN3 loci. The CSN3 locus was associated more strongly with milk coagulation traits, whereas the CSN2 locus was associated more with milk and protein yields. However, because of the tight linkage between the 2 loci, the composite genotypes, or haplotypes, are more appropriate than the single-locus genotypes if they were considered for use in selection.

Associations between stearoyl-CoA desaturase (SCD) gene polymorphisms and milk production traits (milk, fat, and protein yields, fat and protein contents, somatic cell score) were investigated on a sample of 701 lactations of 313 Italian Holsteins. Test-day records (5,097) were analyzed with a mixed linear model that included the fixed effects of herd, date of test, parity, genotype at the SCD locus, and lactation interval nested within SCD genotype, and the random effect of cow. An effect of the SCD genotype on milk and protein yields was detected, with VV cows producing more milk (about 2 kg/d) and protein (about 0.07 kg/d) compared with AA cows. The contribution of the SCD locus to the phenotypic variance of the 2 traits was about 0.015. These results suggest a possible use of the SCD locus in gene-assisted selection programs for the improvement of milk production traits in dairy cattle, although large-scale studies in different breeds are required.

The present study was a contribution on the genetic characterization of the Burlina local cattle breed, and an approach to understanding the relationships between Burlina, Holstein Friesian and Brown Swiss which represent the majority of the dairy cattle reared nowadays in North-East Italy. The obtained results helped to clarify the genetic diversity and distinctiveness of Burlina population. In particular, the low genetic distance between Burlina and Holstein Friesian and the assignment of a moderate percentage of Burlina animals to Holstein Friesian suggested that crosses between them took place in the past, while crosses with Brown Swiss seemed to be less frequent. However, analyses of marker genotypes, showed a cluster with only Burlina individuals, which demonstrates the genetic distinctness of this breed. The Burlina breed showed the highest variability among the analysed breeds and its inbreeding coefficient was low. The data contribute to the feasibility of a conservation and selection programme for this breed and the results are useful for the implementation of a conservation strategy that should aim to conserve animals where the contribution from foreign breeds is as small as possible.

Milk coagulation properties (MCP) are an important aspect in assessing cheese-making ability. Several studies showed that favorable conditions of milk reactivity with rennet, curd formation rate, and curd strength, as well as curd syneresis, have a positive effect on the entire cheese-making process and subsequently on the ripening of cheese. Moreover, MCP were found to be heritable, but little scientific literature is available about their genetic aspects. The aims of this study were to estimate heritability of MCP and genetic correlations among MCP and milk production and quality traits. A total of 1,071 Italian Holstein cows (progeny of 54 sires) reared in 34 herds in Northern Italy were sampled from January to July 2004. Individual milk samples were collected during the morning milking and analyzed for coagulation time (RCT), curd firmness (a30), pH, titratable acidity, fat, protein, and casein contents, and somatic cell count. About 10% of individual milk samples did not coagulate in 31 min, so they were removed from the analyses. Estimates of heritability for RCT and a30 were 0.25 +/- 0.04 and 0.15 +/- 0.03, respectively. Estimates of genetic correlations between MCP traits and milk production traits were negligible except for a30 with protein and casein contents (0.44 +/- 0.10 and 0.53 +/- 0.09, respectively). Estimates of genetic correlations between MCP traits and somatic cell score were strong and favorable, as well as those between MCP and pH and titratable acidity. Selecting for high casein content, milk acidity, and low somatic cell count might be an indirect way to improve MCP without reducing milk yield and quality traits.

This study aimed to estimate genetic parameters for body condition score (BCS), calving interval (CI), somatic cell score (SCS), yield, and linear type traits for the Italian Brown Swiss cattle population. A total of 32,359 records of first-parity lactating cows were collected from 2002 to 2004 in 4,885 dairy herds. The pedigree file included 96,661 animals. Multiple-trait animal models were analyzed using REML to estimate (co)variance components without repeated observations on traits. The estimated heritability was 0.15 for BCS, 0.05 for CI, and 0.06 for SCS, and ranged from 0.09 to 0.14 for test-day yield traits and from 0.07 to 0.32 for linear type traits. The genetic correlations of CI with yield and most linear type traits were positive, whereas the correlation between CI and BCS was negative (-0.35). For type traits, BCS showed, in general, a moderately negative genetic correlation except for strength, pastern, and heel height. The genetic correlation of CI or BCS with SCS was moderately low but favorable (0.19 and -0.26, respectively). The estimated correlations indicated that selection for greater yield and type traits can exert unfavorable effects on the reproductive ability of cows. To counterbalance these effects and to carry out early prediction of breeding values of bulls for fertility, inclusion of BCS in the breeding program is advisable.

Samples of herd milk (506) were analyzed to assess sources of variation for milk coagulation properties (MCP) for 5 different dairy cattle breeds. Data were recorded in 55 single-breed dairy herds in the Trento province, a mountain area in northeast Italy. The 5 cattle breeds were Holstein-Friesian (8 herds), Brown Swiss (16 herds), Simmental (10 herds), Rendena (13 herds), and Alpine Gray (8 herds). Herd milk samples were analyzed for the MCP traits, milk rennet coagulation time (RCT), curd-firming time, and curd firmness (a30), as well as protein and fat percentages, somatic cell count, Soxhlet-Henkel acidity, and bacterial count. An ANOVA was performed to study the effect of breed, herd within breed, DIM, month of lactation, protein and fat percentages, somatic cell score, titratable acidity, and log bacterial count within breed on MCP. Breed was the most important source of variation. In particular, the Rendena breed showed the best MCP traits at 13.5 min and 27.0 mm for RCT and a30, respectively. The Holstein-Friesian breed had the worst coagulation properties at 18.0 min and 17.5 mm for RCT and a30, respectively. The other 3 breeds showed intermediate coagulation properties. The RCT values were better at the beginning of lactation, whereas RCT and a30 values were better in September and October (14.3 min and 25.7 mm, respectively). Among the composition traits, only the titratable acidity affected MCP traits of herd milk positively.

The study assessed the fertility and purity of sexed semen used for inseminating Holstein-Friesian heifers in commercial dairy herds. Sex-sorted semen from 4 proven Holstein-Friesian bulls and available under commercial conditions was used on nulliparous Holstein heifers reared on 61 dairy farms of northern Italy. Data from 536 artificial inseminations with pregnancy diagnosis and 258 calvings were analyzed using the logistic regression procedure. The effects of year and season of insemination or calving, age at insemination or calving, heifer inbreeding, and the sperm dose used for insemination on the probability of a positive pregnancy diagnosis or of the birth of a female calf, respectively, were studied. The overall pregnancy rate for sexed semen was 51% and was affected by year of insemination and bull. Heifers inseminated with sexed semen from 2 bulls had lower pregnancy rates than heifers inseminated with sexed semen from other bulls. Purity of the sexed sperm, based on the proportion of female calves, was 87% and this percentage was not affected by explanatory variables included in the logistic regression. The results demonstrate that bulls differ in terms of fertility of their sexed semen. Careful selection of the insemination sires used for sorted semen is advisable for avoiding low fertility inseminations.

This study aimed to estimate heritability for condition score and heart girth using a test-day model, to investigate the genetic relationships between condition score, heart girth, and milk yield traits and to analyze the genetic relationships of condition score and heart girth measured at different stages of lactation. Cows from 25 dairy herds were scored for body condition and measured for heart girth at 3-mo intervals for 2 yr. Approximately 5000 test-day observations on condition score, heart girth, and milk fat and protein yield from 1344 Italian Friesian cows were analyzed using two approaches: 1) repeated observations for a trait were considered repeated measurements of the same trait; 2) observations for a trait collected in different stages of lactation (dry period, 1 to 75, 76 to 130, 131 to 210, and 211 to 300 DIM) were treated as different traits. (Co)variance components and related parameters were estimated using REML multiple-trait procedures and animal models with unequal design for different traits. Heritability estimates for fat and protein test-day yield and for test-day condition score and heart girth were 0.22, 0.18, 0.29, and 0.33, respectively. Condition score was negatively correlated with yield traits and positively correlated with heart girth, whereas genetic relationships between heart girth and milk yield traits were negligible. Heritability estimates were 0.27 for condition score recorded in the first half of lactation (1 to 75 and 76 to 130 DIM), 0.36 for condition score in the second half of lactation (131 to 210 and 211 to 300 DIM) and 0.32 for condition score recorded on dry cows. Genetic correlations between condition scores measured in different lactation stages were generally high (0.85 or more), with the exception of the relationships between the first and the last stage of lactation (0.74) and between the first half of lactation and the dry period (0.7). Heritability estimates for heart girth in different lactation stages ranged from 0.31 to 0.40, and genetic correlations between high girth measured in different lactation stages were higher than 0.80.

This work reports on use of the recently described amplified fragment length polymorphism (AFLP) technology for DNA fingerprinting in cattle. The AFLP technology produces molecular markers through the high-stringency polymerase chain reaction (PCR)-amplification of restriction fragments that are ligated to synthetic adapters and amplified using primers, complementary to the adapters, which carry selective nucleotides at their 3' ends. While, for plants, the double digestion of genomic DNA with EcoRI and MseI is suggested, in mammals the enzyme combination EcoRI/TaqI produces clearer and more polymorphic AFLP patterns. In a sample of 47 Italian Holstein genotypes, 16 EcoRI/TaqI primer combinations identified 248 polymorphic bands in a species known for its low level of restriction polymorphism. In spite of the low information content carried by each AFLP polymorphism (average polymorphism information content = 0.31), the number of fragments revealed by each primer combination increased significantly the level of genetic information gained in each experiment. AFLP patterns are reproducible in independent experiments and polymorphic fragments segregate in cattle families according to Mendelian rules.

Cows from 25 dairy herds were scored for body condition at 3-mo intervals for over 2 yr to study the pattern of changes during lactation and the effects of parity and milk yield capability of cows on changes in body reserves. Data were recorded for 1395 Holstein cows grouped into three parity classes and five classes of mature equivalent milk yield. The analysis model accounted for nearly 70% of the variation in body condition score. Body reserves decreased during early lactation until about 100 DIM and were restored during mid and late lactation. The pattern of change in body condition score varied among lactations and dairy merit of cows. Depletion and subsequent recovery of body reserves were less intense for primiparous cows than for multiparous cows. Loss of body condition scores was higher and more prolonged for cows of higher dairy merit. The minimum body condition score occurred at 3 mo after calving for the worst yielding cows and at 4 mo after calving for the best yielding cows; the highest yielding cows had twice the loss in body condition as the lowest yielding cows. General equations are presented as a proposed guideline to examine changes in body condition score of Holstein cows of different parities and dairy merit.

This study evaluated the adequacy of an alternate a.m.-p.m. testing scheme for milk yield in comparison with the official test method based on weighing two milkings within 24 h. A total of 88,558 single test day milking weights from 15,670 Italian Friesian cows in 610 herds in the province of Milano (Italy) were collected between September 1991 and October 1992. Ratios were computed for daily milk yield to a.m. and p.m. milking weights (direct yield ratios) and ratios of a.m and p.m. milking weights to daily milk yield (inverse yield ratios). Analysis of variance indicated that the milking interval is the most important source of variation for yield ratios. Factors for estimating daily milk yield from single milking weights adjusted for milking intervals were derived through regression analysis of direct and inverse yield ratios on the length of the milking interval. Daily milk yield was estimated more precisely and accurately when adjustment factors were used than when single milking weights were doubled. The doubling of a.m. and p.m. milking weights overestimated and underestimated (5% on average) daily milk yield, respectively. For 305-d lactation yield, accuracies of these methods were comparable. In conclusion, alternate recording of a.m. and p.m. milking weights led to reliable estimates of milk yield. Effects of the alternate a.m.-p.m. testing scheme on estimates of milk components and genetic evaluations of dams of sires should be investigated.

The purpose of this study was to develop a time-dependent model to account for the effects of recombinant bST in a slow-release formulation on short-term (between two consecutive injections) and long-term (baseline of the lactation curve) response of milk yield and composition. Observations on milk yield (n = 8234) and on milk composition (n = 1509) of 196 Holstein Friesian cows were recorded over 1 yr of trial. Treated cows were injected with somidobove at 3- or 4-wk intervals. Data were analyzed according to a model that included effect of treatment, parity, interaction, and the random effect of cow; two time-dependent covariables, obtained by the splitting of DIM, were included in the model to account for the effects of bST on short- and long-term responses of milk traits. Cyclical variations of milk yield, protein, and SCC content in the interval between two consecutive injections were detected. Recombinant bST administration also influenced the persistency of milk yield and protein content. Treatment of cows at 3- and 4-wk intervals increased yield by 20.6 and 12.6% over those of untreated cows. Nearly 60% of this increment was due to the short-term effect of bST. Milk composition response to bST was less noticeable.

Advances in DNA-based marker technology have enabled the identification of genomic regions underlying complex phenotypic traits in livestock species. The incorporation of detected quantitative trait loci into genetic evaluation provides great potential to enhance selection accuracies, hence expediting the genetic improvement of economically important traits. The objective of the present study was to investigate 96 single nucleotide polymorphisms (SNP) located in 53 candidate genes previously reported to have effects on milk production and quality traits in a population of highly selected Holstein-Friesian bulls. A total of 423 semen samples were used to genotype the bulls through a custom oligo pool assay. Forty-five SNP in 32 genes were found to be associated with at least 1 of the tested traits. Most significant and favorable SNP trait associations were observed for polymorphisms located in CCL3 and AGPAT6 genes for fat yield (0.037 and 0.033 kg/d, respectively), DGKG gene for milk yield (0.698 kg/d), PPARGC1A, CSN1S1, and AGPAT6 genes for fat percentage (0.127, 0.113, and 0.093%, respectively), GHR gene for protein (0.064%) and casein percentage (0.053%), and TLR4 gene for fat (0.090%), protein (0.066%), and casein percentage (0.050%). Somatic cell score was favorably affected by GHR (−0.095) and POU1F1 (−0.137), and interesting SNP-trait associations were observed for polymorphisms located in CSN2, POU1F1, and AGPAT6 genes for rennet coagulation time (−0.592, −0.558, and −0.462 min, respectively), and GHR and CSN2 genes for curd firmness 30 min after rennet addition (1.264 and 1.183 mm, respectively). In addition to the influence of individual SNP, the effects of composite genotypes constructed by grouping SNP according to their individual effects on traits considered in the analysis were also examined. Favorable and significant effects on milk traits were observed for 2 composite genotypes, one including 10 SNP and the other 4 SNP. The former was associated with an increase of milk (0.075 kg/d), fat (0.097 kg/d), protein (0.083 kg/d), and casein yields (0.065 kg/d), and the latter was associated with an increase of fat (0.244%), protein (0.071%), and casein percentage (0.047%). Although further research is required to validate the identified SNP loci in other populations and breeds, our results can be considered as a preliminary foundation for further replication studies on gene-assisted selection programs. [ABSTRACT FROM AUTHOR]

Abstract: The aim of the study is to examine the progress in trait harmonization among member countries participating in the International Bull Evaluation Service Organization (Interbull) for overall conformation score (OCS), overall udder score (OUS), overall feet and legs (OFL), and body condition score (BCS) of Holstein bulls. Input values for the cluster analysis were across-country genetic correlations estimated among 8 countries from 2001 to 2011 for overall type traits and among 12 countries from 2009 to 2011 for BCS. Changes in evaluation procedure and trait definition affected the clustering of countries. For OCS, the evolution was clear, particularly for Australia; the genetic correlations between this country and the majority of other members decreased during the years. Other changes in clustering were due to modifications in trait definitions introduced by France (2004), Germany (2007) and United Kingdom–Ireland (2005, 2008 and 2011). The genetic correlations for OUS were generally higher than those for OCS, and changes in clustering were less pronounced: the structure of clusters remained unchanged from 2004 to 2007. For OFL, Australia was even more distant than for the other two composite traits, probably due to the use of “side view foot diagonal” as best predictor of OFL. The changes in trait definition introduced by France Black and White Holstein (2001) and Italy (2003 and 2007) entailed modifications in the structure of dendrograms. The cluster analysis well depicts the difference among countries that sent information on BCS to Interbull and countries that sent angularity as predictor of BCS, as they were grouped in two distinct clusters and the correlations between them were negative. Major effort is needed to harmonize the traits among countries. [Copyright &y& Elsevier]