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On the first of January 2019, the European Committee on Antimicrobial Susceptibility Testing, EUCAST, introduced the concept of "area of technical uncertainty" (ATU). The aim was to report on the incidence of ATU test results in a selection of common bacterial species and the subsequent impact on antimicrobial resistance categorization and workload. A retrospective analysis of clinical samples collected from February 2019 until November 2019 was performed. Susceptibility to amoxicillin-clavulanic acid and piperacillin-tazobactam in Enterobacterales (Escherichia spp., Klebsiella spp., Proteus spp.), piperacillin-tazobactam in Pseudomonas aeruginosa, and amoxicillin-clavulanic acid and cefuroxime in Haemophilus influenzae was studied. Disk diffusion antibiotic susceptibility testing was read and interpreted by ADAGIO 93400 automated system (Bio-Rad, France). In case of an inhibition zone in the ATU, strains were retested using gradient minimal inhibitory concentration method (Etest, BioMerieux, France). Overall, 14,164 isolate-antibiotic combinations were tested in 7922 isolates, resulting in 1204 (8.5%) disk zone diameters in the ATU region. Retesting of ATUs with Etest resulted in a category change from S to R for amoxicillin-clavulanic acid in 63/498 (12.7%) of Escherichia spp., 2/58 (3.4%) of Klebsiella spp., 2/37 (5.4%) of Proteus spp., and 6/125 (4.8%) of Haemophilus influenzae. For piperacillin-tazobactam, a category change from S to R was found in 33/92 (35.9%) of Pseudomonas aeruginosa. We conclude that ATU testing has a substantial impact on the correct interpretation of antimicrobial resistance, at the expense of turn-around time and with the cost of additional workload.

Scavenging can have important consequences for food web dynamics, for example, it may support additional consumer species and affect predation on live prey. Still, few food web models include scavenging. We develop a dynamic model that includes two facultative scavenger species, which we refer to as the predator or scavenger species according to their natural scavenging propensity, as well as live prey, and a carrion pool to show ramifications of scavenging for predation in simple food webs. Our modeling suggests that the presence of scavengers can both increase and decrease predator kill rates and overall predation in model food webs and the impact varies (in magnitude and direction) with context. In particular, we explore the impact of the amount of dynamics (exploitative competition) allowed in the predator, scavenger, and prey populations as well as the direction and magnitude of interference competition between predators and scavengers. One fundamental prediction is that scavengers most likely increase predator kill rates, especially if there are exploitative feedback effects on the prey or carrion resources like is normally observed in natural systems. Scavengers only have minimal effects on predator kill rate when predator, scavenger, and prey abundances are kept constant by management. In such controlled systems, interference competition can greatly affect the interactions in contrast to more natural systems, with an increase in interference competition leading to a decrease in predator kill rate. Our study adds to studies that show that the presence of predators affects scavenger behavior, vital rates, and food web structure, by showing that scavengers impact predator kill rates through multiple mechanisms, and therefore indicating that scavenging and predation patterns are tightly intertwined. We provide a road map to the different theoretical outcomes and their support from different empirical studies on vertebrate guilds to provide guidance in wildlife management., Scavenging, while often ignored, can have major impacts on predation and food web dynamics. We convert empirical observations on scavenging and predation into a theoretical framework to explain observed contrasting patterns and make predictions across different food webs. ​

As wheat (Triticum aestivum) is an important staple food across the world, preservation of stable yields and increased productivity are major objectives in breeding programs. Drought is a global concern because its adverse impact is expected to be amplified in the future due to the current climate change. Here, we analyzed the effects of edaphic, environmental, and host factors on the wheat root microbiomes collected in soils from six regions in Belgium. Amplicon sequencing analysis of unplanted soil and wheat root endosphere samples indicated that the microbial community variations can be significantly explained by soil pH, microbial biomass, wheat genotype, and soil sodium and iron levels. Under drought stress, the biodiversity in the soil decreased significantly, but increased in the root endosphere community, where specific soil parameters seemingly determine the enrichment of bacterial groups. Indeed, we identified a cluster of drought-enriched bacteria that significantly correlated with soil compositions. Interestingly, integration of a functional analysis further revealed a strong correlation between the same cluster of bacteria and β-glucosidase and osmoprotectant proteins, two functions known to be involved in coping with drought stress. By means of this in silico analysis, we identified amplicon sequence variants (ASVs) that could potentially protect the plant from drought stress and validated them in planta. Yet, ASVs based on 16S rRNA sequencing data did not completely distinguish individual isolates because of their intrinsic short sequences. Our findings support the efforts to maintain stable crop yields under drought conditions through implementation of root microbiome analyses. ispartof: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL vol:19 pages:4235-4247 ispartof: location:Netherlands status: published

Background: Carbapenemase-producing Enterobacterales (CPE) have rapidly emerged in Europe, being responsible for nosocomial outbreaks. Aim: Following an outbreak in the burn unit of Ghent University Hospital, we investigated whether CPE can spread between toilets through drain water and therefrom be transmitted to patients. Methods: In 2017, the burn centre of our hospital experienced an outbreak of OXA-48-producing Klebsiella pneumoniae that affected five patients staying in three different rooms. Environmental samples were collected from the sink, shower, shower stretcher, hand rail of the bed, nursing carts, toilets, and drain water to explore a common source. Whole-genome sequencing and phylogenetic analysis was performed on K. pneumoniae outbreak isolates and two random K. pneumoniae isolates. Findings: OXA-48-producing K. pneumoniae was detected in toilet water in four out of six rooms and drain water between two rooms. The strain persisted in two out of six rooms after two months of daily disinfection with bleach. All outbreak isolates belonged to sequence type (ST) 15 and showed isogenicity (

Background Microorganisms are not only indispensable to ecosystem functioning, they are also keystones for emerging technologies. In the last 15 years, the number of studies on environmental microbial communities has increased exponentially due to advances in sequencing technologies, but the large amount of data generated remains difficult to analyze and interpret. Recently, metabarcoding analysis has shifted from clustering reads using Operational Taxonomical Units (OTUs) to Amplicon Sequence Variants (ASVs). Differences between these methods can seriously affect the biological interpretation of metabarcoding data, especially in ecosystems with high microbial diversity, as the methods are benchmarked based on low diversity datasets. Results In this work we have thoroughly examined the differences in community diversity, structure, and complexity between the OTU and ASV methods. We have examined culture-based mock and simulated datasets as well as soil- and plant-associated bacterial and fungal environmental communities. Four key findings were revealed. First, analysis of microbial datasets at family level guaranteed both consistency and adequate coverage when using either method. Second, the performance of both methods used are related to community diversity and sample sequencing depth. Third, differences in the method used affected sample diversity and number of detected differentially abundant families upon treatment; this may lead researchers to draw different biological conclusions. Fourth, the observed differences can mostly be attributed to low abundant (relative abundance Conclusions Investigation of metabarcoding data should be done with care. Correct biological interpretation depends on several factors, including in-depth sequencing of the samples, choice of the most appropriate filtering strategy for the specific research goal, and use of family level for data clustering.

International audience; The effect of trophic exposure to Octocrylene (OC) on aerobic metabolism of clownfi sh Amphiprion ocellaris was investigated. There were no signifi cant differences in Standard Metabolic Rate (SMR), Active Metabolic Rate (AMR) or aerobic metabolic scope (AS) at the concentration of 10 μg/g of octocrylene in diet of juvenile's clownfi sh whatever the time of exposure. This suggests that under these experimental conditions, exposure to OC in food at a concentration of 10 μg/g did not infl uence aerobic metabolism of this species.

The effect of a dietary phosphorus regime in freshwater on vertebra bone mineralization was assessed in diploid and triploid Atlantic salmon, Salmo salar. Fish were fed either a low phosphorus (LP) diet containing 10.5 g kg−1 total phosphorus or a normal phosphorus (NP) diet containing 17.4 g kg−1 total phosphorus from ∼3 to ∼65 g (day 126) in body weight. Two further groups were fed the NP diet from ∼3 g in body weight, but were then switched to the LP diet after 38 (∼10 g in body weight) or 77 (∼30 g in body weight) days. Growth, vertebral ash content (% ash) and radiologically detectable vertebra pathologies were assessed. Triploids were initially smaller than diploids, and again on day 77, but there was no ploidy effect on days 38 or 126. Vertebral ash content increased with increasing body size and those fish fed the NP diet had higher vertebral ash content than those groups fed the LP diet during the intervening time period, but this diet effect became less apparent as fish grew, with all groups having relatively equal vertebral ash content at termination. In general, triploids had lower vertebral ash content than diploids on day 38 and this was most evident in the group fed the LP diet. On day 77, those triploids fed the LP diet during the intervening time period had lower vertebral ash content than diploids. At termination on day 126, the triploids had the same vertebral ash content as diploids, irrespective of diet. There was a ploidy × diet interaction on vertebral deformities, with triploids having higher prevalences of fish with ≥1 deformed vertebra in all dietary groups except continuous NP. In conclusion, between days 0 and 77 (3–30 g body size), triploids required more dietary phosphorus than diploids in order to maintain similar vertebral ash content. A possible link between phosphorus feeding history and phosphorus demand is also discussed.

Background When maize (Zea mays L.) is grown in the Northern hemisphere, its development is heavily arrested by chilling temperatures, especially at the juvenile phase. As some endophytes are beneficial for plants under stress conditions, we analyzed the impact of chilling temperatures on the root microbiome and examined whether microbiome-based analysis might help to identify bacterial strains that could promote growth under these temperatures. Results We investigated how the maize root microbiome composition changed by means of 16S rRNA gene amplicon sequencing when maize was grown at chilling temperatures in comparison to ambient temperatures by repeatedly cultivating maize in field soil. We identified 12 abundant and enriched bacterial families that colonize maize roots, consisting of bacteria recruited from the soil, whereas seed-derived endophytes were lowly represented. Chilling temperatures modified the root microbiome composition only slightly, but significantly. An enrichment of several chilling-responsive families was detected, of which the Comamonadaceae and the Pseudomonadaceae were the most abundant in the root endosphere of maize grown under chilling conditions, whereas only three were strongly depleted, among which the Streptomycetaceae. Additionally, a collection of bacterial strains isolated from maize roots was established and a selection was screened for growth-promoting effects on juvenile maize grown under chilling temperatures. Two promising strains that promoted maize growth under chilling conditions were identified that belonged to the root endophytic bacterial families, from which the relative abundance remained unchanged by variations in the growth temperature. Conclusions Our analyses indicate that chilling temperatures affect the bacterial community composition within the maize root endosphere. We further identified two bacterial strains that boost maize growth under chilling conditions. Their identity revealed that analyzing the chilling-responsive families did not help for their identification. As both strains belong to root endosphere enriched families, visualizing and comparing the bacterial diversity in these communities might still help to identify new PGPR strains. Additionally, a strain does not necessarely need to belong to a high abundant family in the root endosphere to provoke a growth-promoting effect in chilling conditions.

Conventional methods to access plant physiological traits are based on destructive measurements by means of biochemical extraction or leaf clipping, thereby limiting the throughput capability. With advances in hyperspectral imaging sensor, fast, non-invasive and non-destructive measurements of a plant’s physiological status became feasible. In this work, a non-destructive method for the characterization of a plant’s status from hyperspectral images is presented. A supervised data-driven method based on Machine Learning Regression (MLR) algorithms was developed to generate prediction models of four targeted physiological traits: water potential, effective quantum yield of photosystem II, transpiration rate and stomatal conductance. Standard Normal Variate (SNV) transformed reflectance spectra were used as the input variables for building the regression model. Three MLR algorithms: Gaussian Process Regression (GPR), Kernel Ridge Regression (KRR), and Partial Least Squares Regression (PLSR) were explored as candidate methods for building the prediction model of the targeted physiological traits. Validation results show that the non-linear prediction models, developed based on the GPR algorithm produced the best estimation accuracy on all plant traits. The best prediction models were applied to a small-scale phenotyping experiment to study drought stress responses in maize plants. Results show that all estimated traits revealed a significant difference between plants under drought stress and normal growth dynamics as early as after 3 days of drought induction.

X.D. was funded by a grant from the National Institute for Health Research (NIHR) Health Protection Research Unit in Genomics and Enabling Data (no. NIHR200892). M.A.H. was supported by grants from the Medical Research Council (nos. G1001787/1, MR/N002660/1 and MR/P007201/1) and the Economic and Social Research Council (no. ES/S000186/1). E.M.H. was supported by a UK Research and Innovation (UKRI) Fellowship (no. MR/S00291X/1). The discovery of antibiotics more than 80 years ago has led to considerable improvements in human and animal health. Although antibiotic resistance in environmental bacteria is ancient, resistance in human pathogens is thought to be a modern phenomenon that is driven by the clinical use of antibiotics1. Here we show that particular lineages of methicillin-resistant Staphylococcus aureus—a notorious human pathogen—appeared in European hedgehogs in the pre-antibiotic era. Subsequently, these lineages spread within the local hedgehog populations and between hedgehogs and secondary hosts, including livestock and humans. We also demonstrate that the hedgehog dermatophyte Trichophyton erinacei produces two β-lactam antibiotics that provide a natural selective environment in which methicillin-resistant S. aureus isolates have an advantage over susceptible isolates. Together, these results suggest that methicillin resistance emerged in the pre-antibiotic era as a co-evolutionary adaptation of S. aureus to the colonization of dermatophyte-infected hedgehogs. The evolution of clinically relevant antibiotic-resistance genes in wild animals and the connectivity of natural, agricultural and human ecosystems demonstrate that the use of a One Health approach is critical for our understanding and management of antibiotic resistance, which is one of the biggest threats to global health, food security and development. Publisher PDF

The chemical composition of Lebanese Hypericum scabrum essential oil (EO) was analyzed by gas chromatography (GC) and gas chromatography-mass spectrometry (GG-MS). Its antimicrobial activity was evaluated by determining its minimal inhibitory concentrations (MICs) against a Gram-negative and a Gram-positive bacterium, one yeast, and five dermatophytes. H. scabrum EO was most active on filamentous fungi (MIC values of 32–64 µg/mL). Synergy within the oil was investigated by testing each of the following major components on Trichophyton rubrum: α-pinene, limonene, myrcene, β-pinene and nonane, as well as a reconstructed EO. The antifungal activity of the natural oil could not be reached, meaning that its activity might be due, in part, to minor constituent(s). The interactions between H. scabrum EO and commercially available antifungals were assessed by the checkerboard test. A synergistic effect was revealed in the combination of the EO with amphotericin B.

UV filters are widely used in many pharmaceutical and personal care products such as sunscreen and cosmetics to protect from UV irradiation. Due to their hydrophobic properties and relative stability, they have a high capacity to accumulate in sediment. Little information is available on their ecotoxicity on fish. In aquatic ecosystems, fish eggs could be directly affected by UV filters through contact with contaminated sediment. The aim of this study was to investigate the individual toxicity of four UV filters: benzophenone-3 (BP3), butyl methoxydibenzoylmethane (BM), bis-ethylhexyloxyphenol methoxyphenyl triazine (BEMT), and methylene bis-benzotriazolyl tetramethylbutylphenol (MBBT), in embryo-larval stages of zebrafish Danio rerio. Fish eggs were exposed to single UV filters by contact with spiked sediment during 96 h at a concentration of 10 μg g-1. Among the four UV filters tested, BP3 was the more toxic, reducing cardiac frequency and increasing standard metabolic rate of larvae.

1.The cost of reproduction on demographic rates is often assumed to operate through changing body condition. Several studies have found that reproduction depresses body mass more if the current conditions are severe, such as high population densities or adverse weather, than under benign environmental conditions. However, few studies have investigated the association between the fitness components and body mass costs of reproduction. 2.Using 25 years of individual-based capture–recapture data from Svalbard reindeer Rangifer tarandus platyrhynchus, we built a novel Bayesian state-space model that jointly estimated interannual change in mass, annual reproductive success and survival, while accounting for incomplete observations. The model allowed us to partition the differential effects of intrinsic and extrinsic factors on both non-reproductive mass change and the body mass cost of reproduction, and to quantify their consequences on demographic rates.3. Contrary to our expectation, the body mass cost of reproduction (mean = –5.8 kg) varied little between years (CV = 0.08), whereas the between-year variation in body mass changes, that were independent of the previous year's reproductive state, varied substantially (CV = 0.4) in relation to autumn temperature and the amount of rain-on-snow in winter. This body mass loss led to a cost of reproduction on the next reproduction, which was amplified by the same environmental covariates, from a 10% reduction in reproductive success in benign years, to a 50% reduction in harsh years. The reproductive mass loss also resulted in a small reduction in survival.4. Our results show how demographic costs of reproduction, driven by interannual fluctuations in individual body condition, result from the balance between body mass costs of reproduction and body mass changes that are independent of previous reproductive state. We illustrate how a strong context-dependent fitness cost of reproduction can occur, despite a relatively fixed body mass cost of reproduction. This suggests that female reindeer display a very conservative energy allocation strategy, either aborting their reproductive attempt at an early stage or weaning at a relatively constant cost. Such a strategy might be common in species living in a highly stochastic and food limited environment.

To discover microorganisms that naturally possess chemical weapons against the phytopathogen Fusarium oxysporum, the biological and chemical diversity of plant leaf endophytes was investigated. Endophytes were isolated from the palm tree Astrocaryum sciophyllum collected in pristine forests of French Guiana. Several Xylariaceae inhibited the growth of F. oxysporum and were further explored. Antifungal specialized metabolites were isolated from the Xylariaceae BSNB-0294 strain in confrontation with the phytopathogen and led to the identification of undescribed compounds, i.e., two depsipeptides named xylariaceins, two metabolites containing a 3-imidazolinone moiety, and four new compounds including a nitro-phenylpropanamide and three phenylalanine analogues named xylariains A-D. In parallel, the chemical investigation of the phytopathogen during the coculture led to the identification of an unknown compound, which we named focicin. The production of focicin was exacerbated during the competition. Matrix-assisted laser desorption/ionization coupled to time-of-flight mass spectometry (MALDI-TOF MS) imaging of the competition between BSNB-0294 (endophytic strain) and F. oxysporum f.sp. ciceris (phytopathogen) highlighted time-dependent chemical interactions between the two microorganisms.

Significance Whether the renowned population cycles of small mammals in northern food webs are driven by bottom-up (plant–herbivore) or top-down (predator–prey) interactions is still a debated question but crucial to our understanding of their ecological functions and response to climate change. A long-term study of a graminivorous vole population in an exceptionally simple High Arctic food web allowed us to identify which population dynamics features are present without top-down regulation. Unique features were high-amplitude, noncyclic population fluctuations driven by a combination of stochastic weather events and season-specific density dependence likely arising from plant–herbivore interactions. That such features are not present in more complex food webs points to the importance of top-down regulation in small mammal populations., Ecologists are still puzzled by the diverse population dynamics of herbivorous small mammals that range from high-amplitude, multiannual cycles to stable dynamics. Theory predicts that this diversity results from combinations of climatic seasonality, weather stochasticity, and density-dependent food web interactions. The almost ubiquitous 3- to 5-y cycles in boreal and arctic climates may theoretically result from bottom-up (plant–herbivore) and top-down (predator–prey) interactions. Assessing, empirically, the roles of such interactions and how they are influenced by environmental stochasticity has been hampered by food web complexity. Here, we take advantage of a uniquely simple High Arctic food web, which allowed us to analyze the dynamics of a graminivorous vole population not subjected to top-down regulation. This population exhibited high-amplitude, noncyclic fluctuations—partly driven by weather stochasticity. However, the predominant driver of the dynamics was overcompensatory density dependence in winter that caused the population to frequently crash. Model simulations showed that the seasonal pattern of density dependence would yield regular 2-y cycles in the absence of stochasticity. While such short cycles have not yet been observed in mammals, they are theoretically plausible if graminivorous vole populations are deterministically bottom-up regulated. When incorporating weather stochasticity in the model simulations, cyclicity became disrupted and the amplitude was increased—akin to the observed dynamics. Our findings contrast with the 3- to 5-y population cycles that are typical of graminivorous small mammals in more complex food webs, suggesting that top-down regulation is normally an important component of such dynamics.

Two diastereoisomers, namely, Crataegus pinnatifida tripyrrolic Chl catabolites or Cp-TCC-1 (1) and Cp-TCC-2 (2), were isolated from the leaves of Crataegus pinnatifida Bge. var. major. Compounds 1 and 2 were identified using spectroscopic methods including HR-ESI-TOF-MS, 1D-NMR, 2D-NMR. A probable biosynthetic pathway to Cp-TCC-1 (1) and Cp-TCC-2 (2) is expounded.

In animals with long generation times, evolution of physiological and morphological traits may not be fast enough to keep up with rapid climate warming, but thermoregulatory behaviour can possibly serve as an important buffer mitigating warming effects. In this study, we investigated if the cold-adapted Svalbard reindeer (Rangifer tarandus platyrhynchus (Vrolik, 1829)) used cool bed sites as a thermoregulatory behaviour in the summer. We recorded habitat variables and ground temperature at 371 bed sites with random “control” sites 10 and 100 m distant. Using case-control logistic regression, we found that reindeer selected bed sites on cool substrates (snow and mire), as well as cold, dry ground on days with warm ambient temperatures, while they avoided such sites on cold days. Selection of both cool substrates and cool ground did not depend on age or sex. The study was conducted in an environment where neither predatory threat nor insect harassment influenced bed site selection. Our findings suggest that the thermal landscape is important for habitat selection of cold-adapted Arctic ungulates in summer. Thus, behavioural strategies may be important to mitigate effects of climate change, at least in the short term. bed site, behavioural buffering, climate change, habitat selection, snow, ungulates, Svalbard reindeer, Rangifer tarandus platyrhynchus.

Soil microbial communities hold great potential for sustainable and ecologically compatible agriculture. Although numerous plant-beneficial bacterial strains from a wide range of taxonomic groups have been reported, very little evidence is available on the plant-beneficial role of bacteria from the genus Caulobacter. Here, the mode of action of a Caulobacter strain, designated RHG1, which had originally been identified through a microbial screen for plant growth-promoting (PGP) bacteria in maize (Zea mays), is investigated in Arabidopsis thaliana. RHG1 colonized both roots and shoots of Arabidopsis, promoted lateral root formation in the root, and increased leaf number and leaf size in the shoot. The genome of RHG1 was sequenced and was utilized to look for PGP factors. Our data revealed that the bacterial production of nitric oxide, auxins, cytokinins, or 1-aminocyclopropane-1-carboxylate deaminase as PGP factors could be excluded. However, the analysis of brassinosteroid mutants suggests that an unknown PGP mechanism is involved that impinges directly or indirectly on the pathway of this growth hormone.

Sea lice are a critical health issue in most salmonid farming regions. New cage-based technologies can prevent infestations from occurring, such as the ‘snorkel’, which introduces an impermeable barrier that separates salmon lice Lepeophtheirus salmonis from Atlantic salmon Salmo salar in the surface waters where lice are most abundant. While snorkels provide protection from lice, their lice-reducing effect can vary under different environmental conditions. We conducted production-scale sea-cage experiments at 2 sites with contrasting salinity environments in Norway. At the coastal site, with a weak and unsystematic halocline, snorkels reduced lice infestations by 76%. However, at the fjord site, with brackish surface waters and a strong halocline, snorkels did not reduce lice relative to control cages, likely because both lice and salmon remained deeper in the water column below the brackish layer, and infection rate was similar. At the fjord site, as lice numbers between snorkel and control cages were similar, we tested for differences in the absence of the potentially confounding effect of different lice levels. Snorkel cages at the fjord site modified swimming speeds (1.14 times faster), surface breaching behaviours (2.8 times less), and total echo-sounder signal strength of fish (an index of swim bladder fullness; 30-40% less) relative to control cages. Production parameters remained similar, but snout condition was poorer in snorkel cages, suggesting more frequent contact with cage netting. Our results suggest that salinity is a significant environmental factor that alters the lice-reducing efficacy of depth-based technologies such as snorkels. Further, snorkels affect salmon behaviour, which must be considered in welfare assessments of their use.

The study of physiological processes resulting from water-limited conditions in crops is essential for the selection of drought-tolerant genotypes and the functional analysis of related genes. A promising, non-invasive technique for plant trait analysis is close-range hyperspectral imaging (HSI), which has great potential for the early detection of plant responses to water deficit stress. In this work, a data analysis method is described that, unlike vegetation indices, the present method applies spectral similarity on selected bands with high discriminative information, while requiring a careful treatment of uninformative illumination effects. The latter issue is solved by a standard normal variate (SNV) normalization that removes linear effects and a supervised clustering approach to remove pixels that exhibit nonlinear multiple scattering effects. On the remaining pixels, the stress-related dynamics is quantified by a spectral analysis procedure that involves a supervised band selection procedure and a spectral similarity measure against well-watered control plants. The proposed method was validated by a large-scale study of water-stress and recovery of maize plants in a high-throughput plant phenotyping platform. The results showed that the analysis method allows for an early detection of drought stress responses and of recovery effects shortly after re-watering.

Human-caused habitat disturbances and climate change are leading threats to biodiversity. Studying the impacts of human activities on wildlife from a behavioral perspective is a relevant starting point to understand the mechanisms underlying population and species resistance and resilience to disturbances. In this study, we assessed the effects of weather (temperature and precipitation), habitat disturbances (roads and clearcuts), and natural habitat types on the space use patterns of a threatened boreal population of woodland caribou (Rangifer tarandus caribou). An extensive data set of 288,665 relocations from 50 adult females outfitted with GPS collars over 7 years in the boreal forest of Québec, Canada was used to evaluate residency time in natural and disturbed habitats for five distinct biologically defined periods. The most parsimonious linear mixed-effects model for each period showed that individuals stayed longer in more natural habitat types. During calving and summer, residency time decreased with increasing road density, whereas residency time decreased with increasing temperature during winter and spring. We found no evidence of a synergistic effect between daily weather and human disturbances on movement behavior of caribou, but consider their respective influence as additive. We also showed large individual variation in residency time, except during the calving period. Lower individual variation in residency time during calving may be explained by strong evolutionary constraints on behavior faced by females to ensure protection and survival of their offspring. Based on our results, we suggest keeping large patches of suitable and roadless habitat for caribou to favor the spacing-out antipredator strategy exhibited by females during calving. By tracking individuals over several complete annual cycles, we showed variation in the effects of daily weather and human disturbances on residency time across biological periods. Our study highlights that the inclusion of daily weather variables helps better understand space-use patterns of a threatened species.

Warm water thermal treatments dominate delousing operations in Norwegian Atlantic salmon (Salmo salar) aquaculture for the removal of ectoparasitic salmon lice (Lepeophtheirus salmonis). However, treatments can lead to poor welfare outcomes for fish. Reverse thermal delousing by rapidly reducing ambient temperatures to very low treatment temperatures may also prove effective if there is a sufficient safety margin in the tolerances of salmon to cold water exposure such that negative side effects do not emerge. We tested the effects of immediate transfer of salmon from ambient temperature (15 °C) to cold water at different temperatures and durations on lice removal and short-term impacts on fish welfare. Treatments of −1 °C water for 10 min and 1 °C for 240 min treatments reduced mobile lice loads, but created more skin and eye damage than controls. Our results on delousing effect and welfare outcomes require ground-truthing at industry scale, as crowding, pumping, and the passage of fish through delousing units add additional and possibly synergistic lice removal effects and pose further welfare risks.

Farming Atlantic salmon (Salmo salar L) in submerged cages may be a way for the industry to avoid surface related problems such as salmon lice and make new farming sites available. However, salmon do not cope with long term submergence and regularly need to access the surface to refill their swim-bladders and maintain buoyancy. We tested how salmon coped with submerged cages that were lifted to the surface once each week to allow surface access. Three submerged cages were stationed with a roof depth at 10 m for a period of 8 weeks and measures of welfare and behaviour were compared against three standard cages. All cages held approximately 1700 newly sea-transferred smolts. Submerged fish swam 1.4× to 3.4× times faster, schooled tighter and swim bladder volumes declined gradually from the start to the end of each week. When cages were lifted and the surface became available, an immediate burst of jump and rolling behaviour showed that the salmon had been negatively buoyant. Nevertheless, no evidence of acute buoyancy problems occurred during submergence and similar growth rates and welfare scores were recorded. Our results indicate that farming salmon in submerged cages with weekly surface access is viable and could assist in solving key production problems.

Assessing the effectiveness of conservation actions to halt population declines is challenging when confounded by other factors. We assessed whether culling of red fox, a predator currently increasing in number in the sub‐Arctic, contributed to recent recovery of the critically endangered Fennoscandian population of Lesser White‐fronted Goose Anser erythropus, while controlling for potentially confounding food web dynamics. Using 19 years of data, 10 before and 9 after the implementation of annual red fox culling, we estimated the effect of this action on annual performance of the goose population. We corrected for the potentially confounding effects of cyclic rodent dynamics and semi‐domestic reindeer carrion abundance, both of which are expected to trigger predator functional and numerical responses, as well as for annual variation in spring phenology. Goose reproductive success fluctuated in synchrony with the rodent cycle and was negatively related to abundant carrion. When accounting for these aspects of food web dynamics, there was no evidence for an effect of red fox culling on reproductive success. There was, however, a tendency for fox culling to increase adult survival. Our analysis suggests that goose performance in their breeding area is influenced by fluctuating offspring predation, mediated by mainly natural (rodents) and partly anthropogenic (semi‐domestic reindeer) dynamic components of the food web. Synthesis and applications. The effect of a decade‐long red fox culling on goose reproductive success and survival is currently uncertain, despite predation driving reproductive success through changes in rodent and reindeer carrion abundance. New management actions may consist of regulation of reindeer herd sizes and/or removal of carcasses to reduce the subsidizing effect of reindeer carrion on mesopredators. Getting robust evidence regarding the impact of red fox culling on population recovery depends on continuing research to disentangle food web dynamics and efficiency of management actions.

Vibrio fischeri possesses a complex AHL-mediated Quorum-sensing (QS) system including two pathways, LuxI/R (3-oxo-C6-HSL and C6-HSL) and AinS/R (C8-HSL), which are important for the regulation of physiological traits. Diverse QS-dependent functional phenotypes have been described in V. fischeri; however, AHL diversity is still underestimated. In the present study, we investigated AHL diversity in five symbiotic V. fischeri strains with distinct phenotypic properties using UHPLC-HRMS/MS. The results obtained (1) revealed an unexpectedly high diversity of signaling molecules, (2) emphasized the complexity of QS in V. fischeri, and (3) highlight the importance of understanding the specificity of AHL-mediated QS.

The fasting endurance hypothesis (FEH) predicts strong selection for large body size in mammals living in environments where food supply is interrupted over prolonged periods of time. The Arctic is a highly seasonal and food restricted environment, but contrary to predictions from the FEH, empirical evidence shows that Arctic mammals are often smaller than their temperate conspecifics. Intraspecific studies integrating physiology and behaviour of different‐sized individuals, may shed light on this paradox. We tested the FEH in free‐living Svalbard reindeer (Rangifer tarandus platyrhynchus). We measured daily energy expenditure (DEE), subcutaneous body temperature (Tsc) and activity levels during the late winter in 14 adult females with body masses ranging from 46.3 to 57.8 kg. Winter energy expenditure (WEE) and fasting endurance (FE) were modelled dynamically by combining these data with body composition measurements of culled individuals at the onset of winter (14 years, n = 140) and variation in activity level throughout winter (10 years, n = 70). Mean DEE was 6.3±0.7 MJ day−1. Lean mass, Tsc and activity had significantly positive effects on DEE. Across all 140 individuals, mean FE was 85±17 days (range 48–137 days). In contrast to the predictions of the FEH, the dominant factor affecting FE was initial fat mass, while body mass and FE were not correlated. Furthermore, lean mass and fat mass were not correlated. FE was on average 80% (45 days) longer in fat than lean individuals of the same size. Reducing activity levels by ~16% or Tsc by ~5% increased FE by 7%, and 4%, respectively. Our results fail to support the FEH. Rather, we demonstrate that (i) the size of fat reserves can be independent of lean mass and body size within a species, (ii) ecological and environmental variation influence FE via their effects on body composition, and (iii) physiological and behavioural adjustments can improve FE within individuals. Altogether, our results suggest that there is a selection in Svalbard reindeer to accumulate body fat, rather than to grow structurally large. he Arctic, activity, biologging, daily energy expenditure, doubly labelled water, intraspecific scaling, subcutaneous body temperature, Svalbard reindeer to accumulate body fat, rather than to grow structurally large.

Ecologists are still puzzled by the diverse population dynamics of herbivorous small mammals that range from high-amplitude, multi-annual cycles to stable dynamics. Theory predicts that this diversity results from combinations of climatic seasonality, weather stochasticity and density-dependent food web interactions. The almost ubiquitous 3-5-yr cycles in boreal and arctic climates may theoretically result from bottom-up (plant-herbivore) and top-down (predator-prey) interactions. Assessing empirically the roles of such interactions, and how they are influenced by environmental stochasticity, has been hampered by food web complexity. Here, we take advantage of a uniquely simple High-Arctic food web, which allowed us to analyze dynamics of a graminivorous vole population not subjected to top-down regulation. This population exhibited high-amplitude, non-cyclic fluctuations - partly driven by weather stochasticity. However, the predominant driver of the dynamics was direct density dependence, which alternated between being weak in summer and strong (overcompensatory) in winter that the population frequently crashed. Model simulations showed that this season-specific density dependence would yield regular 2-year cycles in absence of stochasticity. While such short cycles have not yet been observed in mammals, they are theoretically plausible if graminivorous vole populations are deterministically bottom-up regulated. When incorporating weather stochasticity in the model simulations, cyclicity became disrupted and the amplitude was increased - akin to the observed dynamics. Our findings contrast with the 3-5-yr population cycles involving delayed density dependence that are typical of graminivorous small mammals in more complex food webs, suggesting that top-down regulation is an important component of such dynamics.

Predator avoidance and food availability are both factors known to influence habitat selection and site fidelity around calving in caribou and reindeer. Here, we assess habitat selection and site fidelity during the calving period in the solitary, Arctic Svalbard reindeer Rangifer tarandus platyrhynchus, which is subject to limited predation risk and human disturbance. In this largely predator-free environment, we explore and discuss if habitat selection during the first week after calving is driven by food availability or remnants of anti-predatory behaviour. Based on GPS-collar data and ultrasound scanning (2009–2017; n = 134 individual-years) from two study areas, we estimated individual calving dates using recursive partitioning and first passage time and compared habitat selection and site fidelity of reproductive versus non-reproductive females. The K-select analysis suggested similar habitat selection during calving in reproductive and non-reproductive females. Female reindeer generally selected for lowland, flat habitats with high proportion of heath and moss tundra, i.e. habitats typically rich in terms of forage plants. Individuals producing a calf had significantly higher site fidelity in the calving period compared to the null model, and the mean distance between consecutive years' calving areas ranged between 1.5 and 3.9 km. Our study provides support for the prediction that in the absence of significant predation, ungulate calving site selection in the Arctic is mainly driven by the availability of spatially and temporally varying food resources.

International audience; Benzophenone-3 (BP3) is a widely used organic UV filter present in many environmental compartments. One way BP3 is released into the environment is through effluents from wastewater treatment plants (WWTPs). These plants are possible sources for degradation activity and WWTP sludge may potentially degrade BP3. Our goal was to identify any BP3 degrading microorganism(s) in WWTP sludge and to investigate whether the degradation was co-metabolic. Initial WWTP sludge microcosms spiked with BP3 showed 100% degradation after 20 days. Multiple transfers of these microcosms, while maintaining a strong selective pressure for BP3 degradation capabilities, resulted in the dominance of one bacterial strain. This strain was identified as Sphingomonas wittichii BP14P and was subsequently isolated. It was shown to degrade BP3 in a growth dependent manner. Strain BP14P utilized BP3 as the sole energy and carbon source and completely degraded BP3 after 7 days in minimal media. We tested the capability of BP14P to degrade nine other UV filters, but the degradation ability seemed to be restricted to BP3. However, whether this specificity is due to the lack of degradation genes, cellular transport or low bioavailability of the other UV filters remained unclear. The efficient degradation of BP3 by a group of bacteria well known for their potential for xenobiotic degradation is an important step forward for a complete risk assessment of the long-term environmental impact of BP3.

Warm water treatment has in recent years become widely used for ridding salmonids of sea lice in aquaculture although the consequences of the treatment for fish welfare are not adequately investigated. The objective of this study was to document potential long-term welfare effects of repeated warm water treatments on Atlantic salmon (Salmo salar). Five weeks after a baseline welfare indicator scoring, non-anaesthetised Atlantic salmon ( w ¯ = 1379 ± 313 g, n = 332) were treated individually in a chamber with seawater at a temperature of 34 °C (warm water treatment) or 9 °C (control treatment) for 30 s. The treatment was repeated after 23–24 days. During the second treatment, a subset of the fish was video recorded for behavioural analysis. Seventeen to eighteen days after the second treatment, welfare indicators were again scored, and organ samples were taken for histopathological examination. The repeated warm water treatments resulted in a significantly increased prevalence and/or severity of scale losses, snout wounds, various eye problems, and active fin injuries as well as a significantly reduced specific growth rate. The fish displayed an immediate, strong behavioural reaction when exposed to warm water, which was probably the main cause of the detected injuries.

Structural modification of sea cages is continually changing to counter major production issues associated with commercial salmon farming. For example, snorkels and skirts are added to cages to reduce salmon lice infestations, and submerging cages can reduce salmon-lice encounter rates, minimise the effects of storms or avoid other unsuitable sea surface conditions. Unlike snorkels and skirts, the uptake of submerged cages has stalled due to negative effects associated with salmon buoyancy, as salmon require frequent access to the surface to gulp air and fill their swim bladders. Fitting submerged cages with underwater air domes provides an underwater air surface and appears to resolve buoyancy associated issues, but they have not been tested over a full production cycle. Here, we used three 1728 m3 cages submerged to 15 m fitted with air domes and three standard surface cages (i.e. control cages) to grow ~6000 fish per cage from sea transfer (~ 0.2 kg) to harvest size (~5 kg). We tested if growth rates, swimming behaviour, key SWIM (Salmon Welfare Index Model) welfare parameters and lice infestation levels differed between control and submerged cages. Submerged cages had 93% lower lice levels than controls during a large lice pulse event in mid-winter, which was visible through the subsequent lice stages. Swim bladder fullness, swimming behaviour and surface activity rates indicated submerged fish competently used the underwater airdome to maintain neutral buoyancy for the full production cycle. However, after 12 months, harvested mean fish weight was far smaller in submerged (2.8 kg) than control (5 kg) cages and overall mortality 2.5 times higher. Likewise, SWIM welfare scores for eye condition and mouth jaw wounds were worsened in submerged than control cages. The poorer outcomes in submerged cages reflect the suboptimal environmental conditions experienced deeper in the water column, where colder water and/or lower oxygen levels for long periods may have compromised growth. We conclude that while submergence can reduce lice infestation rates, strategies to do so must ensure that fish do not encounter sub-optimal environments for fish growth and welfare.

Sterile triploid Atlantic salmon (Salmo salar) show inconsistent seawater grow-out, but the reason why remains unclear. The purpose of this study was to determine the salinity optima of triploid post-smolts. Diploids and triploids were assessed for smoltification status during an underyearling smolt regime before being transferred to one of four different salinities, 0, 11, 23 and 35 ppt at 12 °C and under 24 h continuous light for 83 days. During this period, fish growth, plasma biochemistry, and production traits (vertebral deformities, ocular cataracts, sexual maturation) were monitored. Molecular biomarkers in the gill (nkaα1a, nkaα1b, nkcc1a) suggested triploids reached peak smolt earlier than diploids and began the desmoltification process before the start of the salinity treatments, however this was not reflected in gill Na+/K+-ATPase enzyme activity. At the initiation of the salinity treatments triploids were significantly larger than diploids (mean weight g ± SE: 71 ± 0.7 and 87.2 ± 0.8 for diploids and triploids, respectively) and there was a ploidy effect on post-smolt growth, with body weight showing a clearer positive trend with salinity in diploids (0 < 11 = 23 = 35 ppt) than in triploids (0 < 11 < 35 = 23 ppt) (final mean weight g ± SE: 255.2 ± 7.4, 303.9 ± 9, 313.9 ± 9 and 342.4 ± 12 for diploids and 322.9 ± 9.7, 361.7 ± 10.7, 425.9 ± 12.1, 415.2 ± 12.2 for triploids at 0, 11, 23, and 35 ppt, respectively). Plasma Na+ and Cl− increased, but plasma pH decreased, with increasing salinity in both ploidy. However, ploidy only had transient effects on plasma biochemistry depending on the salinity treatment. There was no ploidy effect on vertebral deformities (21% of both ploidy had one or more deformed vertebra). In contrast, triploids had a significantly higher prevalence of ocular cataracts (84 vs 98% in diploids and triploids, respectively) with a higher mean cataract score (mean ± SE: 1.93 ± 0.1 and 2.78 ± 0.1 for diploids and triploids, respectively), but a significantly lower prevalence of pubertal male post-smolts (15 vs 2% in diploids and triploids, respectively). Salinity treatment had no effect on vertebral deformities, cataracts, or post-smolt sexual maturation. In summary, there was a ploidy mismatch for smoltification biomarkers in the gill and salinity had a strong effect on post-smolt growth, but the effects were ploidy dependent. publishedVersion

Beneficial interactions between plant roots and rhizosphere microorganisms are pivotal for plant fitness. Nevertheless, the molecular mechanisms controlling the feedback between root architecture and microbial community structure remain elusive in maize. Here, we demonstrate that transcriptomic gradients along the longitudinal root axis associate with specific shifts in rhizosphere microbial diversity. Moreover, we have established that root-derived flavones predominantly promote the enrichment of bacteria of the taxa Oxalobacteraceae in the rhizosphere, which in turn promote maize growth and nitrogen acquisition. Genetic experiments demonstrate that LRT1-mediated lateral root development coordinates the interactions of the root system with flavone-dependent Oxalobacteraceae under nitrogen deprivation. In summary, these experiments reveal the genetic basis of the reciprocal interactions between root architecture and the composition and diversity of specific microbial taxa in the rhizosphere resulting in improved plant performance. These findings may open new avenues towards the breeding of high-yielding and nutrient-efficient crops by exploiting their interaction with beneficial soil microorganisms.

Sea cage fish farming is typically open to the environment, with disease transmission possible between farmed and wild hosts. In salmonid aquaculture, salmon louse Lepeophtheirus salmonis infestations cause production losses, reduce welfare for farmed fish and increase infestation rates for wild fish populations. The high density of hosts in farms likely also shifts the coevolutionary arms race between host and parasite, with ecological and evolutionary consequences for the salmon louse. Using farm-reported salmon and louse abundances and publicly reported estimates of wild salmonid host abundances and the salmon lice they carry, we estimated (1) the relative abundance of farmed and wild salmonid hosts and (2) the relative importance of each for the abundance of salmon lice for the coastal zone of Norway from 1998 to 2017. Farmed hosts increased in importance over time with the expansion of the industry. From 2013 to 2017, farmed salmonids outnumbered wild salmonids by 267-281:1. By 2017, farmed salmonids accounted for 99.6% of available hosts and produced 99.1% of adult female salmon lice and 97.6% of mated (ovigerous) adult female salmon lice in Norwegian coastal waters. The persistent dominance of farmed hosts has clear implications: (1) management decisions that aim to limit lice abundance can be guided by lice data from farms alone, as lice on wild salmonids make a trivial contribution to the national lice population; and (2) strategies to prevent or treat lice infestations are vulnerable to the evolution of resistance, as the pool of wild hosts is inconsequential and will not act as a refuge large enough to stem the evolution of resistance. As the Norwegian salmon industry expands and salmon lice infestations continue, farmed salmon will drive the ecology and evolution of salmon lice.

Avoiding genetic interactions between wild and farmed Atlantic salmon is regarded as one of the major requirements for a sustainable salmon aquaculture industry. For this reason, farming functional sterile triploids has been suggested as a possible solution. However, knowledge about how triploids cope under commercial conditions is lacking. In the present study, we compared the performance of diploid and triploid Atlantic salmon among four Norwegian aquaculture companies. Diploid and triploid groups of the same genetic line were farmed in western, mid, and northern Norway under commercial conditions from seawater transfer until slaughter.Overall, triploid salmon exhibited reduced survival, higher incidence of emaciated fish, and scored, on average, a lower quality rating during primary processing. The results highlight the need for further research on how to improve the welfare and performance of triploid salmon in commercial aquaculture operations.

Seasonal energetic challenges may constrain an animal's ability to respond to changing individual and environmental conditions. Here, we investigated variation in heart rate, a well-established proxy for metabolic rate, in Svalbard reindeer (Rangifer tarandus platyrhynchus), a species with strong seasonal changes in foraging and metabolic activity. In 19 adult females, we recorded heart rate, subcutaneous temperature and activity using biologgers. Mean heart rate more than doubled from winter to summer. Typical drivers of energy expenditure, such as reproduction and activity, explained a relatively limited amount of variation (2–6% in winter and 16–24% in summer) compared to seasonality, which explained 75% of annual variation in heart rate. The relationship between heart rate and subcutaneous temperature depended on individual state via body mass, age and reproductive status, and the results suggested that peripheral heterothermy is an important pathway of energy management in both winter and summer. While the seasonal plasticity in energetics makes Svalbard reindeer well-adapted to their highly seasonal environment, intraseasonal constraints on modulation of their heart rate may limit their ability to respond to severe environmental change. This study emphasizes the importance of encompassing individual state and seasonal context when studying energetics in free-living animals.This article is part of the theme issue ‘Measuring physiology in free-living animals (Part II)’.

Warm water treatment, i.e. exposure to sea water at a temperature of 28–34 °C for 20–30 s, has in recent years been widely used for delousing of Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) in Norwegian aquaculture. High mortality and various lesions (e.g. injuries and/or bleedings in skin, fins, eyes, brain, and gills) have, however, been reported after industrial warm water treatments. The objective of this study was to reveal whether the thermal component of warm water treatment inflicts acute lesions on Atlantic salmon. The study was conducted by exposing individual, sedated Atlantic salmon post-smolts ( w ¯ = 1117 ± 250 g) to sea water at a temperature of 34 °C (warm water treatment, n = 40) or 9 °C (control treatment, n = 20) for 30 s, and subsequently conducting welfare indicator scoring and histopathological examination of their skin, fins, eyes, snout, nasal pits/mucosa, palate, gills, thymus, pseudobranch, brain, heart, liver, kidney, pyloric caeca, pancreas, and spleen. The results showed that the prevalence and severity of acute lesions were not significantly different between the two treatment groups, except for higher prevalence of injuries on the caudal (p = 0.002), dorsal (p = 0.002), and right pelvic fins (p = 0.014) in the warm water treatment group. The main cause of these fin injuries may have been a strong behavioural reaction displayed by the fish when exposed to warm water. Possible consequences of fin injuries, the use of anaesthetic, and statistical limitations were discussed. It was concluded that exposure of Atlantic salmon to sea water at a temperature of 34 °C for 30 s did not lead to any statistically significant change in the prevalence of acute lesions except an increase in minor, possibly behaviour-related, fin injuries. Detection of a lower lesion prevalence than was possible in this study, but which may concern many individuals in an industrial setting, requires examination of a larger number of fish.

Reports of infestation by marine parasitic tapeworms (Eubothrium sp.) and an associated growth reduction in Norwegian farmed salmon are on the rise. With few acceptable treatment options available, due to drug resistance evolution in tapeworms or negative drug impacts on fish, alternative controls against the parasite are in demand. In a 10-month commercial-scale study involving standard sea cages and lice barrier snorkel sea cages of different depths (4, 8, 12 and 16 m), we examined if this depth-based preventive technology primarily used against salmon lice (Lepeophtheirus salmonis) also reduced tapeworm infestation. A submerged net roof opening to a central barrier tube (snorkel) was added to standard cages to move salmon deeper but retain surface access; a cage manipulation that avoids contact with mostly surface-dwelling salmon lice larvae and may also separate fish from calanoid copepods, the intermediate hosts of Eubothrium sp. Salmon populations in unmodified standard cages had higher tapeworm prevalence (63–93%) and abundances (4.6–5.7 Eubothrium sp. fish−1) than those in snorkel cages (20–36% and 0.2–0.6 Eubothrium sp. fish−1). Based on these observations, tapeworm prevention could be another beneficial parasite management outcome of snorkel cage technology or other depth-based prevention techniques against salmon lice. publishedVersion

Mankind is on the verge of a postantibiotic era. New concepts are needed in our battle to attenuate infectious diseases around the world and broad spectrum plant-inspired synergistic pharmaceutical preparations should find their place in the global fight against pathogenic microorganisms. To progress towards the discovery of potent antifungal agents against human pathologies, we embarked upon developing chemometric approach coupled with statistical design to unravel the origin of the anticandidal potential of a set of 66 essential oils (EOs). EOs were analyzed by GC-MS and tested against Candida albicans and C. parapsilosis (Minimal Inhibitory Concentration, MIC). An Orthogonal Partial Least Square (OPLS) analysis allowed us to identify six molecules presumably responsible for the anticandidal activity of the oils: (Z)-ligustilide, eugenol, eugenyl acetate, citral, thymol, and β-citronellol. These compounds were combined following a full factorial experimental design approach in order to optimize the anticandidal activity and selectivity index (SI = IC50(MRC5 cells)/MIC) through reconstituted mixtures. (Z)-Ligustilide and citral were the most active compounds, while (Z)-ligustilide and eugenol were the two main factors that most contributed to the increase of the SI. These two terpenes can, therefore, be used to construct bioinspired synergistic anticandidal mixtures.

Drought at flowering and grain filling greatly reduces maize (Zea mays) yield. Climate change is causing earlier and longer-lasting periods of drought, which affect the growth of multiple maize organs throughout development. To study how long periods of water deficit impact the dynamic nature of growth, and to determine how these relate to reproductive drought, we employed a high-throughput phenotyping platform featuring precise irrigation, imaging systems, and image-based biomass estimations. Prolonged drought resulted in a reduction of growth rate of individual organs-though an extension of growth duration partially compensated for this-culminating in lower biomass and delayed flowering. However, long periods of drought did not affect the highly organized succession of maximal growth rates of the distinct organs, i.e. leaves, stems, and ears. Two drought treatments negatively affected distinct seed yield components: Prolonged drought mainly reduced the number of spikelets, and drought during the reproductive period increased the anthesis-silking interval. The identification of these divergent biomass and yield components, which were affected by the shift in duration and intensity of drought, will facilitate trait-specific breeding toward future climate-resilient crops. When affected by drought, the plant responds by adjusting the growth of individual organs but not the coordination between the organs.

The trunk (core) muscles are involved in daily functions (i. e., stabilizing the body in everyday tasks) and force generation of the limbs during athletic tasks such as kicking, throwing, or running. Even though trunk training is a popular means for improving physical fitness and athletic performance, the direct relationship of improved trunk function (i.e., stability, strength, or endurance), fitness and sport-specific performance is not conclusive. The aim of this proposed review is to evaluate the effects of trunk training on physical fitness and sport-specific performance, and to examine potential subject-related (e.g., age, sex) and trunk training-related moderator variables (e.g., training period, training frequency) for performance changes. We will conduct a systematic literature search in Web of Science, MEDLINE (via EBSCO) and SportDiscus. Relevant papers will be screened independently by two reviewers in two stages: (1) title and abstracts and (2) the full text of the remaining papers. A third reviewer will resolve possible disagreements. Data extraction and risk of bias of the included studies will be performed in addition to the PEDro scoring to judge the quality of the studies. A meta-analysis will be conducted to determine the efficacy of trunk training to increase physical fitness and sport-specific performance measures. In addition, subgroup univariate analyses were computed for subject-related (i.e., age, sex, performance level) and training-related moderator variables (i.e., training period, training frequency, training sessions, session duration). The results of this proposed systematic review and meta-analysis will assess the effects of trunk training on physical fitness and sport-specific and identify which subject-related and training-related moderate variables of trunk training modality might be beneficial for performance gains. This knowledge has potential importance for athletes and coaches in sports.

Arctic ungulates are experiencing the most rapid climate warming on Earth. While concerns have been raised that more frequent icing events may cause die-offs, and earlier springs may generate a trophic mismatch in phenology, the effects of warming autumns have been largely neglected. We used 25 years of individual-based data from a growing population of wild Svalbard reindeer, to test how warmer autumns enhance population growth. Delayed plant senescence had no effect, but a six-week delay in snow-onset (the observed data range) was estimated to increase late winter body mass by 10%. Because average late winter body mass explains 90% of the variation in population growth rates, such a delay in winter-onset would enable a population growth of r = 0.20, sufficient to counteract all but the most extreme icing events. This study provides novel mechanistic insights into the consequences of climate change for Arctic herbivores, highlighting the positive impact of warming autumns on population viability, offsetting the impacts of harsher winters. Thus, the future for Arctic herbivores facing climate change may be brighter than the prevailing view. body mass, climate change, fitness, GPS, movement ecology, plant phenology, Rangifer, snow, space use, ungulates © 2020 The Authors. Global Change Biology published by John Wiley & Sons Ltd This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

Malaria, babesiosis, trypanosomosis, and leishmaniasis are some of the most life-threatening parasites, but the range of drugs to treat them is limited. An effective, safe, and low-cost drug with a large activity spectrum is urgently needed. For this purpose, an aryl amino alcohol derivative called Alsinol was resynthesized, screened in silico, and tested against Plasmodium, Babesia, Trypanosoma, and Leishmania. In silico Alsinol follows the Lipinski and Ghose rules. In vitro it had schizontocidal activity against Plasmodium falciparum and was able to inhibit gametocytogenesis; it was particularly active against late gametocytes. In malaria-infected mice, it showed a dose-dependent activity similar to chloroquine. It demonstrated a similar level of activity to reference compounds against Babesia divergens, and against promastigotes, and amastigotes stages of Leishmania in vitro. It inhibited the in vitro growth of two African animal strains of Trypanosoma but was ineffective in vivo in our experimental conditions. It showed moderate toxicity in J774A1 and Vero cell models. The study demonstrated that Alsinol has a large spectrum of activity and is potentially affordable to produce. Nevertheless, challenges remain in the process of scaling up synthesis, creating a suitable clinical formulation, and determining the safety margin in preclinical models. Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS) Revisión por pares

Metabolomic profiling of the hexacoral Pocillopora damicornis exposed to solar filters revealed a metabolomic signature of stress in this coral. It was demonstrated that the concentration of the known steroid (3β, 5α, 8α) -5, 8-epidioxy- ergosta- 6, 24(28) - dien- 3- ol (14) increased in response to octocrylene (OC) and ethylhexyl salicylate (ES) at 50 µg/L. Based on the overall coral response, we hypothesize that steroid 14 mediates coral response to stress. OC also specifically altered mitochondrial function at this concentration and above, while ES triggered a stress/inflammatory response at 300 µg/L and above as witnessed by the significant increases in the concentrations of polyunsaturated fatty acids, lysophosphatidylcholines and lysophosphatidylethanolamines. Benzophenone-3 increased the concentration of compound 14 at 2 mg/L, while the concentration of stress marker remained unchanged upon exposition to the other solar filters tested. Also, our results seemed to refute earlier suggestions that platelet-activating factor is involved in the coral inflammatory response.

BackgroundEarly 2020, a COVID-19 epidemic became a public health emergency of international concern. To address this pandemic broad testing with an easy, comfortable and reliable testing method is of utmost concern. The nasopharyngeal (NP) swab sampling is the reference method though hampered by international supply shortages. A new oropharyngeal/nasal (OP/N) sampling method was investigated using the more readily available throat swab.MethodsIn this prospective observational study 36 COVID-19 patients were tested with both a NP and combined OP/N swab for SARS-CoV-2 RNA by PCR. In hospitalized suspect patients, who tested negative on both swabs, extensive retesting was performed. The sensitivity of NP versus combined OP/N swab sampling on admission and the correlation between viral RNA loads recovered was investigated.Results35 patients were diagnosed with SARS-CoV-2 by means of either NP or OP/N sampling. The paired swabs were both positive in 31 patients. The one patient who tested negative on both NP and OP/N swab on admission, was ultimately diagnosed on bronchoalveolar lavage fluid. A strong correlation was found between the viral RNA loads of the paired swabs (r = 0.76; P < 0.05). The sensitivity of NP and OP/N analysis in hospitalized patients (n = 28) was 89.3% and 92.7% respectively.ConclusionsThis study demonstrates equivalence of NP and OP/N sampling for detection of SARS-CoV-2 by means of rRT-PCR. Sensitivity of both NP and OP/N sampling is very high in hospitalized patients.

The chemical diversity of biologically active fungal strains from 42 Colletotrichum, isolated from leaves of the tropical palm species Astrocaryum sciophilum collected in pristine forests of French Guiana, was investigated. The collection was first classified based on protein fingerprints acquired by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) correlated with cytotoxicity. Liquid chromatography coupled to high-resolution tandem mass spectrometry (LC-HRMS/MS) data from ethyl acetate extracts were acquired and processed to generate a massive molecular network (MN) using the MetGem software. From five Colletotrichum strains producing cytotoxic specialized metabolites, we predicted the occurrence of peptide and cytochalasin analogues in four of them by MN, including a similar ion clusters in the MN algorithm provided by MetGem software. Chemoinformatics predictions were fully confirmed after isolation of three pentacyclopeptides (cyclo(Phe-Leu-Leu-Leu-Val), cyclo(Phe-Leu-Leu-Leu-Leu) and cyclo(Phe-Leu-Leu-Leu-Ile)) and two cytochalasins (cytochalasin C and cytochalasin D) exhibiting cytotoxicity at the micromolar concentration. Finally, the chemical study of the last active cytotoxic strain BSNB-0583 led to the isolation of four colletamides bearing an identical decadienamide chain.

Objectives To evaluate the antibacterial, antifungal and anthelmintic activities of the ethanolic extract (EEMz), fractions (LPFMz and HPFMz) and compounds isolated from the leaves of Manilkara zapota L. P. Royen. Methods Extract and fractions were produced by turbolization. LPFMz fraction was analysed by gas chromatography–mass spectrometry. The isolated compounds from HPFMz were purified by flash and preparative chromatographic methods, and chemically characterised by UPLC-ESITOFMS, optical rotation, and one- and two-dimensional 1H and 13C NMR techniques. Anthelmintic against Strongyloides venezuelensis and antimicrobial activities against Candida albicans, Trichophyton rubrum and Staphylococcus aureus were evaluated. Key findings EEMz showed mainly phenolic compounds and pentacyclic triterpenes from Δ12-oleane/Δ12-ursane series. Chlorogenic acid, myricetin-3-O-β-D-glucopyranoside, mearnsitrin, germanicol and germanicol acetate were reported to M. zapota leaves for the first time in this work. EEMz, HPFMz, LPFMz showed significative activity against C. albicans (16 µg/mL), while isolated flavonoids were active against S. aureus ( Conclusions M. zapota and its bioactive compound can be eligible such as a potential phytomedicine for the treatment of microbial and strongyloidiasis drug-resistant infections.

International audience; Some 3.5 billion years ago, microorganisms were the first to colonize Earth. They have gradually evolved, within intricate systems of microbial and macroscopic species, to occupy virtually all the available niches on the planet. Genetic drift and natural selection have molded the phenotypic expression of a trillion different microbial species [1], shaping their metabolisms and offering ever-more advantageous abilities to expand, with the production of new metabolites being one key to the fitness and evolutionary success of new species [2]. The rate of discovery of new natural products of microbial origin has increased significantly since the 1970s with the advent of modern methods of purification and structural determination, and later, with holistic approaches to chemical analysis and genetic information-based exploration of natural chemodiversity [3-6]. With these tools in hand and the exploration of innovative and ecologically relevant sources of microorganisms, it is possible to rapidly expand the exploration of chemodiversity on a global scale, and eventually isolate innovative compounds. It should be noted that the enthusiasm to discover new scaffolds is not necessarily relevant in the context of the search for active or useful natural products. Structural modifications that do not affect the core scaffold of a metabolite may provide a significant benefit that can be developed for a therapeutic use. A notable example is in the immense diversity of terpenes built on a limited number of scaffolds. Terpenes have different functional roles-and therefore different biological activities-and have largely contributed to the diversification of higher plants [2,7]. Today, marine microbes can still be regarded as a relatively underappreciated potential source of active compounds yet to be discovered. Some microorganisms can live freely in the water column, while many others live in association. For example, sponges host microorganisms that contribute to their holometabolome, while many coral species host microalgae and symbiotic prokaryotes. Furthermore, many microorganisms contribute to the construction of interspecific biofilms covering biotic and abiotic surfaces. While recent advances in natural-product science now provide access to an unknown dimension of chemodiversity, metabolic engineering will eventually allow the production of active marine compounds in amounts necessary for pharmaceutical development. The Special Issue "Marine Microbial Diversity as a Source of Bioactive Natural Products" was aimed at collecting papers with up-to-date information regarding the characterization of marine microbes' metabolic diversity and the evaluation of the therapeutic potential of marine microbes' metabolites. The interest of the Special Issue was also to show that the exploration of underrated reservoirs of marine microorganisms can lead to the discovery of valuable secondary metabolites. In total, 10 articles were accepted and included in the Special Issue. Most of the articles in this special issue deal with marine fungi, biological and chemical diversity, and their active metabolites. This may be a sign that marine fungi have been under studied to date, and are perceived by many researchers as an important source of discovery in this field [8]. Focusing on marine Arthrinium spp. isolates, Heo et al. conducted a phylogenetic analysis based on internal transcribed spacers, nuclear large subunit rDNA, β-tubulin, and translation elongation factor region

The presence of pharmaceutical and personal care product (PPCP) residues in the aquatic environment is an emerging issue due to their uncontrolled release through gray water, and accumulation in the environment that may affect living organisms, ecosystems and public health. The aim of this study is to assess the toxicity of benzophenone-3 (BP-3), bis-ethylhexyloxyphenol methoxyphenyl triazine (BEMT), butyl methoxydibenzoylmethane (BM), methylene bis-benzotriazolyl tetramethylbutylphenol (MBBT), 2-ethylhexyl salicylate (ES), diethylaminohydroxybenzoyl hexyl benzoate (DHHB), diethylhexyl butamido triazone (DBT), ethylhexyl triazone (ET), homosalate (HS) and octocrylene (OC) on marine organisms from two major trophic levels, including autotrophs (Tetraselmis sp.) and heterotrophs (Artemia salina). In general, results showed that both HS and OC were the most toxic UV filters for our tested species, followed by a significant effect of BM on Artemia salina due to BM&mdash, but only at high concentrations (1 mg/L). ES, BP3 and DHHB affected the metabolic activity of the microalgae at 100 &micro, g/L. BEMT, DBT, ET, MBBT had no effect on the tested organisms, even at high concentrations (2 mg/L). OC toxicity represents a risk for those species, since concentrations used in this study are 15&ndash, 90 times greater than those reported in occurrence studies for aquatic environments. For the first time in the literature, we report HS toxicity on a microalgae species at concentrations complementing those found in aquatic environments. These preliminary results could represent a risk in the future if concentrations of OC and HS continue to increase.

With the occurrence of antibiotic-resistant Staphylococcus aureus strains, identification of new anti-staphylococcal drugs has become a necessity. It has long been demonstrated that plants are a large and diverse source of antibacterial compounds. Psiloxylon mauritianum, an endemic medicinal plant from Reunion Island, was chemically investigated for its reported biological activity against S. aureus. Aspidin VB, a phloroglucinol derivative never before described, together with Aspidin BB, were first isolated from the ethyl acetate extract of P. mauritianum leaves. Their structures were elucidated from spectroscopic data. Aspidin VB exhibited strong antibacterial activity against standard and methicillin-resistant S. aureus strains, with a minimal inhibition concentration (MIC) of 0.25 μg/mL, and no cytotoxicity was observed at 10−5 M in MRC5 cells. Due to its biological activities, Aspidin VB appears to be a good natural lead in the fight against S. aureus.