287 results on '"S. Fernández"'
Search Results
2. Active airflow of the paranasal sinuses in extinct crocodyliforms: Evidence from a natural cast of the thalattosuchian Dakosaurus andiniensis
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Yanina Herrera and Marta S. Fernández
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METRIORHYNCHIDAE ,0301 basic medicine ,Histology ,Airflow ,Natural (archaeology) ,purl.org/becyt/ford/1 [https] ,purl.org/becyt/ford/1.5 [https] ,03 medical and health sciences ,VACA MUERTA FORMATION ,0302 clinical medicine ,Metriorhynchidae ,Paranasal Sinuses ,medicine ,Animals ,Ecosystem ,Ecology, Evolution, Behavior and Systematics ,JURASSIC ,biology ,Dakosaurus ,SUBORBITAL DIVERTICULUM ,Skull ,Anatomy ,ANTORBITAL SINUS ,biology.organism_classification ,Diverticulum ,030104 developmental biology ,Paranasal sinuses ,medicine.anatomical_structure ,Geography ,030217 neurology & neurosurgery ,Biotechnology - Abstract
The evolution of Thalattosuchia documents the unique shift among Crocodylomorpha from aquatic continental/coastal habitats to a fully pelagic lifestyle. This transition was coupled with deep modification of their skeletons, such as hydrofoil forelimbs, hypocercal tail, and loss of osteoderms. The natural snout casts of the rhacheosaurin Cricosaurus araucanensis showed that it also included changes in the internal anatomy of the snout like the enlargement of nasal glands (probably for salt excretion) and the rearrangement of the paranasal sinus system, including the internalization of the antorbital sinus. Here we described the snout natural cast of the geosaurin Dakosaurus andiniensis from the Late Jurassic of Patagonia. The information provided by it indicates that, despite having different external morphologies and ecology, D. andiniensis and C. araucanensis share the same facial anatomy. The new cast preserves a suborbital diverticulum of the antorbital sinus protruding into the orbit through the postnasal fenestra. Its location indicates that it was interleaved with jaw adductor muscles suggesting an active airflow in the paranasal sinus. We provide a putative functional interpretation of this peculiar arrangement where bellow pumps actions of musculature may help drain salt glands. The rearrangement of the paranasal sinuses predates the transition to a completely pelagic-lifestyle. We proposed a stepwise evolutionary scenario of Thalattosuchia, implying changes in the preorbital region (and orbit orientation) where the internalized antorbital sinus via its subsidiary diverticulum was co-opted for helping nasal glands drainage. Further scrutiny of facial anatomy of a larger sample of thalattosuchians will help to test this hypothesis. Fil: Fernández, Marta S.. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Paleontología Vertebrados; Argentina Fil: Herrera, Laura Yanina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Paleontología Vertebrados; Argentina
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- 2021
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3. Reverse transcriptase and protease inhibitors mutational viral load in HIV infected pregnant women with transmitted drug resistance in Argentina
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L. Mammana, Diego Cecchini, María Belén Bouzas, A. Seravalle, A. Gomez, J.A. Sfalcin, Inés Zapiola, Claudia Rodriguez, S. Fernández Giuliano, and F. Fay
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Microbiology (medical) ,Perinatal transmission ,embarazo ,Anti-HIV Agents ,Population ,Argentina ,HIV Infections ,Viral quasispecies ,Drug resistance ,Biology ,resistencia a antirretrovirales ,Pregnancy ,Hiv infected ,Drug Resistance, Viral ,Humans ,In patient ,Protease Inhibitors ,education ,Retrospective Studies ,Pharmacology ,education.field_of_study ,drug resistance ,Brief Report ,virus diseases ,HIV ,VIH ,RNA-Directed DNA Polymerase ,General Medicine ,Viral Load ,Molecular biology ,Infectious Disease Transmission, Vertical ,Mutation ,HIV-1 ,Female ,Pregnant Women ,Viral load - Abstract
espanolObjetivos. Argentina ha informado de altos niveles de farmacorresistencia transmitida (TDR), en mujeres embarazadas infectadas por el VIH por secuenciacion poblacional. Nuestro objetivo fue describir, en pacientes con TDR, el porcentaje de cuasiespecies que albergan mutaciones de resistencia (RAM) y la carga mutacional (ML). Pacientes y metodos. Estudio retrospectivo en una cohorte de 40 mujeres embarazadas VIH positivas naive, cuyas muestras pretratamiento habian sido genotipificadas por TRUGENE (periodo 2008-2014). Las muestras se genotipificaron por secuenciacion ultraprofunda y se calculo la ML considerando la carga viral multiplicada por la frecuencia de las cuasiespecies que albergan RAMs. Resultados. La TDR para ITINN, ITIAN e IP fue del 17,5% (n=7 pacientes), 10% (n=4), 12,5% (n=5) respectivamente. Las RAMs ITINN predominantes fueron K103N (n=4; 10%) y G190A/E/ S (n=3; 7,5%). Para los ITINN, el 78% de los RAM estaban presentes en >93,5% de la poblacion viral y la ML fue >1000 copias/ml (c/mL) para el 89%, con una mediana (IQR) de 8330 c/ml (7738-29796). Se describieron los siguientes RAM de ITIAN (% de cuasiespecies, ML): T215I (99,7%, 11014 c/ml); D67G (1,28%, 502 c/ml); M41L (79,8%, 88578 c/mL) y M184I (1,02%, 173 c/mL). Las IP-RAMs mas frecuentes fueron I85V, M46I, I50V y L90M (n=2, 5% cada una). Para los IP, las cuasiespecies con RAMs fueron Conclusion. Los ITINN-RAMs son predominantes dentro de la poblacion viral, por lo general superan el umbral de 1000 c/mL, que indicaria un riesgo potencial mas alto de transmision perinatal. Por el contrario, las mutaciones de IP aparecen principalmente como variantes minoritarias, con un riesgo menor de transmision. Para ITIAN, las cuasiespecies que albergan RAM y los valores de ML fueron variables. EnglishObjective. Argentina has reported high levels of transmitted drug resistance (TDR), in HIV-infected pregnant women by population sequencing. We aimed to describe, in patients with TDR, the percentage of quasispecies harboring resistance mutations (RAMs) and mutational load (ML). Patients and Methods. Retrospective study in a cohort of 40 naive HIV-infected pregnant women, whose pretreatment samples had been genotyped by TRUGENE (period 2008-2014). Samples were re-sequenced with Ultra-deep Sequencing and ML was calculated considering baseline HIV-1 RNA load multiplied by the frequency of quasispecies harboring RAMs. Results. TDR for NNRTIs, NRTIs and PIs was 17.5% (n=7 patients), 10% (n=4), 12.5% (n=5) respectively. Predominant NNRTI RAMs were K103N (n=4; 10%) and G190A/E/S (n=3; 7.5%). For NNRTIs, 78% of RAMs were present in >93.5% of viral population and ML was >1000 copies/mL (c/mL) for 89%, with a median (IQR) of 8330 c/ml (7738-29796). The following NRTI RAMs were described (per patient: % of quasispecies, ML): T215I (99.7%, 11014 c/ml); D67G (1.28%, 502 c/mL); M41L (79.8%, 88578 c/mL) and M184I (1.02%, 173 c/mL). Most frequent PI-RAMs were I85V, M46I, I50V and L90M (n=2, 5% each). For PIs, quasispecies with RAMs were Conclusion. NNRTI-RAMs are predominant within the viral population, usually exceeding the threshold of 1000 c/mL, indicating potential higher risk of perinatal transmission. Conversely, PI mutations appear mostly as minority variants, with potential lower risk of transmission. Among NRTI, quasispecies harboring RAMs and ML values were variable.
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- 2021
4. ‘Aulophyseter’ rionegrensis (Cetacea: Odontoceti: Physeteroidea) from the Miocene of Patagonia (Argentina): a reappraisal
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Marta S. Fernández, José Ignacio Cuitiño, Florencia Paolucci, and Mónica Romina Buono
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0106 biological sciences ,Aulophyseter ,010506 paleontology ,Cetacea ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Archaeology ,Animal Science and Zoology ,Taxonomy (biology) ,Physeteroidea ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences - Abstract
The giant sperm whale (Physeter macrocephalus) and the dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whales represent the only three extant species of physeteroids. This group has diversified during the Miocene, and the Miocene marine sediments of Patagonia (Argentina) hold one of the most important fossil records of physeteroids. In particular, ‘Aulophyseter’ rionegrensis (Gran Bajo del Gualicho Formation, Miocene), described based on two subcomplete skulls nearly a century ago, has been a problematic taxon because its generic assignation has been questioned in different works. Besides, recent phylogenetic analyses have also failed to recover the putative congeneric sister-group relationship between ‘A.’ rionegrensis and A. morricei (the type species). In this contribution, we re-describe ‘A.’ rionegrensis, evaluate its phylogenetic position and provide a taxonomic review of Aulophyseter. A detailed morphological comparison between ‘A.’ rionegrensis and A. morricei reveals several anatomical differences between them. Phylogenetic analyses recover ‘A.’ rionegrensis as a crown physeteroid, nested within Physeteridae, but not closely related to A. morricei. We provide the new generic name Cozzuoliphyseter gen. nov. for its reception. A preliminary re-assessment of material previously referred to Aulophyseter indicates that A. mediatlanticus, and also historical material of A. morricei, need to be reviewed.
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- 2020
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5. Comparative morphotaxonomical affinities, palaeoecological implications and cladistic analyses of ornithoid eggshells (oofamily Laevisoolithidae) from the Late Cretaceous intertrappean beds of Anjar, District Kachchh, Gujarat, India
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Ashu Khosla, Ashok Sahni, Leonardo Salgado, and Mariela S. Fernández
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0106 biological sciences ,010506 paleontology ,biology ,Intertrappean Beds ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Affinities ,Cretaceous ,Cladistics ,Paleontology ,Paleoecology ,Eggshell ,General Agricultural and Biological Sciences ,Geology ,Ratite ,0105 earth and related environmental sciences - Abstract
We re-evaluate fragmentary eggshells of avian affinities (ratite morphotype) from the Late Cretaceous Intertrappean beds of Anjar (District Kachchh, Gujarat), India in view of additional material a...
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- 2020
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6. Allergic hypersensitivity to garlic and onion in children and adults
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Blanca Martín-Armentia, A. Moro, Alicia Armentia, M. Castro, S. Fernández, M. Castillo, Sara Martín-Armentia, and F. Pineda
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Adult ,Hypersensitivity, Immediate ,Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Mediterranean diet ,Immunology ,Provocation test ,Administration, Oral ,Diet, Mediterranean ,Immunoglobulin E ,Allergic sensitization ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Food allergy ,Onions ,medicine ,Humans ,Immunology and Allergy ,Garlic ,Plant Proteins ,Skin Tests ,Allergy clinic ,biology ,business.industry ,ALLERGIC/HYPERSENSITIVITY ,food and beverages ,General Medicine ,Skin test ,Allergens ,Middle Aged ,medicine.disease ,Dermatology ,Cross-Sectional Studies ,030228 respiratory system ,biology.protein ,Female ,Immunization ,business ,Food Hypersensitivity ,030215 immunology - Abstract
Background China and Spain are world leaders in the consumption of edible bulbs (garlic and onion), but there are few references to their capacity to cause allergic symptoms. The target was to study allergic sensitization and clinical symptoms associated with garlic and onion consumption in a large sample of allergic patients. Methods An observational cross-sectional study was conducted, testing garlic and onion extracts in 8109 patients of all ages seen by our allergy clinic in 2018. Forty-four aeroallergens and foods were tested, including garlic and onion, with prick test and determination of specific IgE. Oral provocation and contact tests were performed if a delayed reaction was suspected. Western Blot was performed in the serum of patients positive to garlic and onion. Results We conducted 356,798 skin tests and 4254 specific IgE determinations. Of the 8109 patients tested, 2508 (30.92%) presented with symptoms associated with food intake and, in these patients, food hypersensitivity was detected by skin test, positive specific IgE or provocation in 924 patients, and was caused by garlic or onions in 27, indicating a prevalence of 2.92%. Immunodetection showed an association between the symptoms and a specific LTP to these bulbs, without cross-reactivity with other LTPs in the Mediterranean diet (peach, wheat). Conclusions Allergic hypersensitivity to garlic and onions should not be underestimated and, given their high consumption, should be included in the diagnostic food allergy battery.
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- 2020
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7. Structural basis of DNA targeting by a transposon-encoded CRISPR–Cas system
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Tyler S. Halpin-Healy, Sanne E. Klompe, Israel S. Fernández, Samuel H. Sternberg, Simons Foundation, and National Institute of General Medical Sciences (US)
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Trans-activating crRNA ,Transposable element ,0303 health sciences ,Multidisciplinary ,Protein engineering ,Computational biology ,Biology ,Fusion protein ,Genome engineering ,Protospacer adjacent motif ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Protein structure ,chemistry ,Cryoelectron microscopy ,Transposition ,RNA ,CRISPR ,Mobile genetic elements ,030217 neurology & neurosurgery ,Transposase ,DNA ,030304 developmental biology - Abstract
Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements1,2,3. Type I CRISPR–Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase–nuclease Cas34,5, but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons6,7. How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ–Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3′ end of the CRISPR RNA (crRNA). The natural Cas8–Cas5 fusion protein binds the 5′ crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ–Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications., Part of this work was performed at the Simons Electron Microscopy Center and National Resource for Automated Molecular Microscopy located at the New York Structural Biology Center, supported by grants from the Simons Foundation (SF349247), NYSTAR and the NIH National Institute of General Medical Sciences (GM103310).
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- 2019
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8. Occurrence of Salmonella typhimurium resistance under sublethal/repeated exposure to cauliflower infusion and infection effects on Caernohabditis elegans host test organism
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M. Consuelo Pina-Pérez, Dolores Rodrigo, Antonio Martínez, Maria Sanz-Puig, Pablo S. Fernández, and Alejandra Arana-Lozano
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Salmonella ,Natural antimicrobials ,General Chemical Engineering ,Resistance ,Virulence ,medicine.disease_cause ,Industrial and Manufacturing Engineering ,Microbiology ,03 medical and health sciences ,0404 agricultural biotechnology ,In vivo ,medicine ,S. enterica var Typhimurium ,Caenorhabditis elegans ,0303 health sciences ,biology ,030306 microbiology ,Host (biology) ,04 agricultural and veterinary sciences ,biology.organism_classification ,Antimicrobial ,040401 food science ,Salmonella enterica ,Infection ,Bacteria ,Food Science - Abstract
Resistant bacteria to antimicrobials are increasingly emerging in medical, food industry and livestock environments. The present research work assesses the capability of Salmonella enterica var Typhimurium to become adapted under the exposure to a natural cauliflower antimicrobial by-product infusion in consecutive repeated exposure cycles. Caenorhabditis elegans was proposed as in vivo host-test organism to compare possible changes in the virulent pattern of the different rounds treated S. enterica var Typhimurium and untreated bacterial cells. According to the obtained results, S. enterica var Typhimurium was able to generate resistance against a repeated exposure to cauliflower by-product infusion 5% (w/v), increasing the resistance with the number of exposed repetitions. Meanwhile, at the first exposure, cauliflower by-product infusion was effective in reducing S. enterica var Typhimurium (≈1 log10 cycle), and S. enterica var Typhimurium became resistant to this natural antimicrobial after the second and third treatment-round and was able to grow (≈1 log10 cycle). In spite of the increased resistance observed for repeatedly treated bacteria, the present study reveals no changes on C. elegans infection effects between resistant and untreated S. enterica var Typhimurium, according to phenotypic parameters evaluation (lifespan duration and egg-laying).
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- 2019
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9. Enamel Microstructure in Eocene Cetaceans from Antarctica (Archaeoceti and Mysticeti)
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Marta S. Fernández, Carolina Loch, Mónica Romina Buono, Thomas Mörs, and Daniela C. Kalthoff
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0106 biological sciences ,MYSTICETES ,010506 paleontology ,food.ingredient ,Annan geovetenskap och miljövetenskap ,Llanocetus ,010603 evolutionary biology ,01 natural sciences ,Paleontología ,La Meseta Formation ,Ciencias de la Tierra y relacionadas con el Medio Ambiente ,Archaeoceti ,TEETH ,food ,stomatognathic system ,Enamel tufts ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,Enamel paint ,biology ,Dentition ,Anatomy ,biology.organism_classification ,stomatognathic diseases ,ARCHAEOCETES ,HUNTER-SCHREGER BANDS ,visual_art ,visual_art.visual_art_medium ,Posterior teeth ,Cusp (anatomy) ,LA MESETA FORMATION ,CIENCIAS NATURALES Y EXACTAS ,Geology ,Other Earth and Related Environmental Sciences - Abstract
Modern baleen whales have no adult teeth, whereas dolphins and porpoises have a homodont and polydont dentition, with simplified enamel microstructure. However, archaic cetaceans (archaeocetes and early mysticetes and odontocetes) had a complex and ornamented dentition, with complex enamel microstructure as in terrestrial mammals. This study describes the morphology of teeth and enamel microstructure in two fossil cetaceans from Antarctica: a basilosaurid archaeocete from the La Meseta Formation (middle Eocene); and Llanocetus sp. from the Submeseta Formation (late Eocene), one of the oldest mysticetes known. The two teeth analyzed were lower premolars, with transversely compressed triangular crowns composed of a main cusp and accessory denticles. The enamel microstructure of the basilosaurid and Llanocetus sp. is prismatic with Hunter-Schreger bands (HSB) and an outer zone of radial enamel. In the basilosaurid, the enamel is relatively thin and measures 150–180 μm, whereas in Llanocetus sp. it is considerably thicker, measuring 830–890 μm in the cusp area and 350–380 μm near the crown base. This is one of the thickest enamel layers among cetaceans, extinct and living. Structures resembling enamel tufts and lamellae were observed in both fossils at the enamel-dentine junction (EDJ) and extending along the thickness of the enamel layer, respectively. The presence of HSB and biomechanical reinforcing structures such as tufts and lamellae suggests prominent occlusal loads during feeding, consistent with raptorial feeding habits. Despite the simplification or absence of teeth in modern cetaceans, their ancestors had complex posterior teeth typical of most mammals, with a moderately thick enamel layer with prominent HSB. Fil: Loch, Carolina. University of Otago; Nueva Zelanda Fil: Buono, Mónica Romina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Geología y Paleontología; Argentina Fil: Kalthoff, Daniela C.. Swedish Museum of Natural History; Suecia Fil: Mörs, Thomas. Swedish Museum of Natural History; Suecia Fil: Fernández, Marta Susana. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Paleontología Vertebrados; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina
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- 2019
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10. Allergen Profile of London Plane Tree Pollen: Clinical and Molecular Pattern in Central Spain
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M. de las Heras, Carlos Pastor-Vargas, Javier Cuesta-Herranz, Emilio Nuñez-Borque, Vanesa Esteban, S Fernández-Bravo, Aida Gómez-Cardeñosa, M Garrido-Arandia, and Diana Betancor
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Veterinary medicine ,Allergy ,Platanus acerifolia ,Immunology ,Population ,medicine.disease_cause ,Immunoglobulin E ,Trees ,Allergen ,Transferases ,Pollen ,London ,medicine ,Hypersensitivity ,Immunology and Allergy ,Humans ,Pla a 2 ,education ,education.field_of_study ,biology ,business.industry ,Plant Extracts ,Plane tree ,Allergens ,Antigens, Plant ,biology.organism_classification ,medicine.disease ,Glutathione ,Spain ,biology.protein ,Platanaceae ,London plane tree ,business ,Pollen allergy - Abstract
Platanus acerifolia (London plane tree) is a deciduous tree of the Platanaceae family. Sensitization to this plant varies with geography. Madrid, located in central Spain, has one of the highest London plane tree pollen concentration levels on the Iberian Peninsula. We evaluated both the clinical characteristics and the molecular sensitization pattern of patients with allergy to London plane tree pollen in the region of Madrid.
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- 2021
11. 'Intracascaral space' an eggshell structure of Caiman latirostris eggs
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Mila V. Piazza, Carlos I. Piña, Mariela S. Fernández, Melina Soledad Simoncini, and Pamela M. L. Leiva
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0106 biological sciences ,0301 basic medicine ,Multidisciplinary ,biology ,Science ,Zoology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Article ,Caiman latirostris ,03 medical and health sciences ,030104 developmental biology ,embryonic structures ,Electron microscopy ,Medicine ,Eggshell ,Incubation - Abstract
In recent decades, eggshells of eggs from large-bodied reptiles have been studied by many researchers, to describe the eggshell, to compare them to extinct lineages that once inhabited our planet and also to understand how the egg provides the embryo specific conditions during incubation. In previous studies we described and characterized normal and pathologic Caiman latirostris eggshells; we also evaluated how the eggshell changes during incubation. In a study relating temperature variation and eggshell structures of successful eggs, we observed empty structures not previously described that we termed “intracascaral space”. The aim of this study is to describe this structure of C. latirostris eggshells. We hypothesize about the possible functions which it would perform during incubation and for development of the embryos.
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- 2021
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12. SARS-CoV-2 Seroconversion and Viral Clearance in Patients Hospitalized With COVID-19: Viral Load Predicts Antibody Response
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Sergio Padilla, Lucía Guillén, Paula Mascarell, Marta S. Fernández, Mar Masiá, José A. García, José C Asenjo, Vanesa Agulló, Félix Gutiérrez, Guillermo Telenti, and Javier García-Abellán
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0301 basic medicine ,viruses ,coronavirus ,medicine.disease_cause ,Immunoglobulin G ,Major Articles ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,030212 general & internal medicine ,Seroconversion ,antibody responses ,seroconversion ,Coronavirus ,biology ,SARS-CoV-2 ,business.industry ,Area under the curve ,Antibody titer ,COVID-19 ,viral load ,AcademicSubjects/MED00290 ,030104 developmental biology ,Infectious Diseases ,Viral replication ,Oncology ,Immunology ,biology.protein ,Antibody ,business ,Viral load ,viral clearance - Abstract
Background The interdependencies of viral replication and the host immune response in patients with coronavirus disease 2019 (COVID-19) remain to be defined. We investigated the viral determinants of antibody response, the predictors of nonseroconversion, and the role of antibodies on viral dynamics. Methods This was a prospective study in patients hospitalized with COVID-19 that was microbiologically confirmed by real-time polymerase chain reaction (RT-PCR). Serial nasopharyngeal and oropharyngeal swabs and plasma samples were obtained for measuring severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA and antibodies (total and S-IgG/N-IgG), respectively. Results Of 132 patients included, 99 (75%) showed positive antibody titers after a median (Q1–Q3) of 11 (8–14) days. The median (Q1–Q3) follow-up was 74.5 (63.0–87.0) days. In an adjusted linear regression model, time to seropositivity was inversely associated with peak log SARS-CoV-2 viral load (P = .009) and positively with time to viral clearance (P = .004). Adjusted predictors of S-IgG levels were time to viral clearance (P < .001), bilateral lung infiltrates on admission (P = .011), and the time-dependent SARS-CoV-2 RNA (P < .001) and SARS-CoV-2 RNA area under the curve (P = .001). Thirty-three (25%) patients showed undetectable antibody titers. Patients who did not seroconvert had higher cycle threshold values of RT-PCR (38.0 vs 28.0; P < .001), had shorter time to viral clearance (3.0 vs 41.0; P < .001), and were more likely to have SARS-CoV-2 only detected on fecal samples (P < .001). Nonseroconvertors had also lower levels of blood inflammatory biomarkers on admission and lower disease severity. Conclusions Viral replication determines the magnitude of antibody response to SARS-CoV-2, which, in turn, contributes to viral clearance. COVID-19 patients who do not seroconvert exhibit a differential virological and clinical profile.
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- 2021
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13. Catutosaurus gaspariniae , gen. et sp. nov. (Ichthyosauria, Thunnosauria) of the Upper Jurassic of Patagonia and the evolution of the ophthalmosaurids
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Alberto C. Garrido, Marta S. Fernández, Lisandro Campos, and Erin E. Maxwell
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0106 biological sciences ,010506 paleontology ,Geography ,biology ,Thunnosauria ,Paleontology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Archaeology ,0105 earth and related environmental sciences - Abstract
Fil: Fernandez, Marta S.. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Division Paleontologia Vertebrados; Argentina
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- 2021
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14. Native Species Facing Climate Changes: Response of Calafate Berries to Low Temperature and UV Radiation
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Mauricio Schoebitz, María Dolores López-Belchi, Pablo S. Fernández, María Eugenia Romero-Román, Richard M. Bastías, Cristina García-Viguera, Fondo Nacional de Desarrollo Científico y Tecnológico (Chile), and Secretaría de Educación Superior, Ciencia y Tecnología (Ecuador)
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Health (social science) ,3309 Tecnología de Los Alimentos ,Climate change ,antioxidant activity ,Introduced species ,temperature influence ,Plant Science ,Temperature influence ,lcsh:Chemical technology ,01 natural sciences ,Health Professions (miscellaneous) ,Microbiology ,Article ,UV radiation ,native Chilean berry ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Antioxidant activity ,lcsh:TP1-1185 ,Tecnología de los Alimentos ,Flavor ,Abiotic component ,PCA ,biology ,010405 organic chemistry ,Berberis microphylla ,04 agricultural and veterinary sciences ,Food security ,food security ,biology.organism_classification ,040401 food science ,0104 chemical sciences ,Horticulture ,Blue colored ,climate change ,chemistry ,Polyphenol ,Anthocyanin ,Native Chilean berry ,Food Science - Abstract
Calafate (Berberis microphylla G. Forst) is a wild bush plant widely distributed in the south of Argentina and Chile. Their blue colored fruits present particular flavor and health benefits attributed to high polyphenol contents biosynthesized by the plant under stress. Studies about correlation of abiotic conditions with anthocyanin profiles and physicochemical features of calafate beneath wild origin environment are not described yet. Hence, this research aimed to evaluate the physicochemical changes, antioxidant activity and anthocyanin content of calafate fruit in relationship to UV solar radiation (W.m&minus, 2) and air temperature (°, C) environment condition during three consecutive years (2017, 2018, 2019). Variations in fruit anthocyanins were determined by comparison between high performance liquid chromatography (HPLC-DAD-ESI)/MSn and CIEL*a*b* colors parameters. Correlations were analyzed by principal component analysis (PCA). Radiation was negatively correlated with fruit size and weight. Physicochemical aspects such as pH, soluble solids, color, total anthocyanins, flavanols and other phenolic compounds were positively correlated with temperature changes. The quantities of monomeric anthocyanins were dependent on both low temperature and global radiation (reaching 20.01 mg g&minus, 1 FW in calafate fruit). These results constitute a valuable resource to understand the structural and physiological plasticity of calafate in facing climate changes for future domestication research as well as for agri-food industrial application.
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- 2021
15. Dynamic competition between SARS-CoV-2 NSP1 and mRNA on the human ribosome inhibits translation initiation
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Israel S. Fernández, Jinfan Wang, Alex G. Johnson, Rosslyn Grosely, Joseph D. Puglisi, and Christopher P. Lapointe
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Ribosomal Proteins ,viruses ,eukaryotic translation initiation ,Biology ,Viral Nonstructural Proteins ,Ribosome ,Eukaryotic translation ,Protein biosynthesis ,Initiation factor ,Humans ,Eukaryotic Small Ribosomal Subunit ,NSP1 ,RNA, Messenger ,Eukaryotic Initiation Factors ,Peptide Chain Initiation, Translational ,Pandemics ,Ribosome Subunits, Small, Eukaryotic ,Messenger RNA ,Multidisciplinary ,human ribosome ,SARS-CoV-2 ,virus diseases ,COVID-19 ,Translation (biology) ,single-molecule fluorescence ,Biological Sciences ,Cell biology ,Biophysics and Computational Biology ,Protein Biosynthesis ,RNA, Viral ,Eukaryotic Ribosome ,Protein Processing, Post-Translational ,Ribosomes - Abstract
Significance SARS-CoV-2 is the causative agent of the COVID-19 pandemic. A molecular framework for how the virus manipulates host cellular machinery to facilitate infection is needed. Here, we integrate biochemical and single-molecule strategies to reveal molecular insight into how NSP1 from SARS-CoV-2 inhibits translation initiation. NSP1 directly binds to the small (40S) subunit of the human ribosome, which is modulated by human initiation factors. Further, NSP1 and mRNA compete with each other to bind the ribosome. Our findings suggest that the presence of NSP1 on the small ribosomal subunit prevents proper accommodation of the mRNA. How this competition disrupts the many steps of translation initiation is an important target for future studies., Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a beta-CoV that recently emerged as a human pathogen and is the causative agent of the COVID-19 pandemic. A molecular framework of how the virus manipulates host cellular machinery to facilitate infection remains unclear. Here, we focus on SARS-CoV-2 NSP1, which is proposed to be a virulence factor that inhibits protein synthesis by directly binding the human ribosome. We demonstrate biochemically that NSP1 inhibits translation of model human and SARS-CoV-2 messenger RNAs (mRNAs). NSP1 specifically binds to the small (40S) ribosomal subunit, which is required for translation inhibition. Using single-molecule fluorescence assays to monitor NSP1–40S subunit binding in real time, we determine that eukaryotic translation initiation factors (eIFs) allosterically modulate the interaction of NSP1 with ribosomal preinitiation complexes in the absence of mRNA. We further elucidate that NSP1 competes with RNA segments downstream of the start codon to bind the 40S subunit and that the protein is unable to associate rapidly with 80S ribosomes assembled on an mRNA. Collectively, our findings support a model where NSP1 proteins from viruses in at least two subgenera of beta-CoVs associate with the open head conformation of the 40S subunit to inhibit an early step of translation, by preventing accommodation of mRNA within the entry channel.
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- 2021
16. Lactic acid bacteria isolated from the Stingless bee Scaptotrigona mexicana and partial characterization of their probiotic activity
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S. Fernández-Roblero, A. Vázquez-Ovando, J. Grajales-Conesa, M. Rincón-Rabanales, and R. Coronel-Niño
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biology ,Pathogenic bacteria ,General Medicine ,Scaptotrigona mexicana ,biology.organism_classification ,medicine.disease_cause ,Dicloxacillin ,Microbiology ,law.invention ,Lactic acid ,Probiotic ,chemistry.chemical_compound ,chemistry ,law ,medicine ,Fermentation ,Escherichia coli ,Bacteria ,medicine.drug - Abstract
The objective of this study was to isolate lactic acid bacteria (LAB) from honey produced by the stingless bee Scaptotrigona mexicana from southern of Mexico, and to evaluate their probiotic potential. From fresh and fermented honey, 18 strains were isolated. Of these, 10 had presumptive LAB biochemical characteristics. Their ability to grow at different pH values and different temperatures, susceptibility to antibiotics, and ability to inhibit Salmonella sp. and Escherichia coli were assessed. All the strains tested were resistant or moderately susceptible to penicillin, dicloxacillin, and ampicillin. The strains that showed tolerance to pH 2.5 were the bacteria labeled FIM1 and FIM2, and only strains OP3 and TUX5 were able to grow at 5 °C. Although none of the supernatant growth media of the strains inhibited the development of pathogenic bacteria, other tests should be done to verify the probiotic nature of the strains that exhibited some characteristic of interest.
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- 2020
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17. Quantitative risk assessment of haemolytic uremic syndrome associated with beef consumption in Argentina
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Victoria Brusa, Analía Inés Etcheverría, Marcelo Signorini, Magdalena Costa, Fernando Sampedro, Pablo S. Fernández, Gerardo Anibal Leotta, and Nora Lía Padola
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Bacterial Diseases ,Male ,Veterinary medicine ,Epidemiology ,Social Sciences ,Carne de Res ,Geographical locations ,Habits ,fluids and secretions ,Medical Conditions ,Animal Products ,Haemolytic Uremic Syndrome ,Medicine and Health Sciences ,Anemia Hemolítica ,Psychology ,Public and Occupational Health ,Beef consumption ,Child ,Mammals ,Multidisciplinary ,Incidence (epidemiology) ,Enfermedades Humanas ,Human Diseases ,food and beverages ,Eukaryota ,Agriculture ,Hygiene ,Ruminants ,QUANTITATIVE RISK ASSESSMENT ,STEC ,Infectious Diseases ,Vertebrates ,Hazard analysis and critical control points ,Medicine ,Female ,PUBLIC HEALTH ,Risk assessment ,Beef ,Production chain ,Haemolytic Anaemia ,Research Article ,Adult ,Meat ,Síndrome Urémico Hemolítico ,Science ,Argentina ,Evaluación de Riesgos ,Food Contamination ,Biology ,Risk Assessment ,Hand Washing ,Bovines ,Quantitative microbiological risk assessment ,Escherichia coli ,Animals ,Humans ,Nutrition ,Behavior ,technology, industry, and agriculture ,Organisms ,Outbreak ,Biology and Life Sciences ,South America ,Diet ,BEEF MEAT ,Red Meat ,Food Storage ,Food ,Medical Risk Factors ,Child population ,Hemolytic-Uremic Syndrome ,Amniotes ,Cattle ,People and places ,purl.org/becyt/ford/4.3 [https] ,Zoology ,purl.org/becyt/ford/4 [https] - Abstract
We developed a quantitative microbiological risk assessment (QMRA) of haemolytic uremic syndrome (HUS) associated with Shiga toxin-producing Escherichia coli (STEC)-contaminated beef (intact beef cuts, ground beef and commercial hamburgers) in children under 15 years of age from Argentina. The QMRA was used to characterize STEC prevalence and concentration levels in each product through the Argentinean beef supply chain, including cattle primary production, cattle transport, processing and storage in the abattoir, retail and home preparation, and consumption. Median HUS probability from beef cut, ground beef and commercial hamburger consumption was
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- 2020
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18. Preemptive interleukin-6 blockade in patients with COVID-19
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Mar Masiá, Marta S. Fernández, Guillermo Telenti, José A. García, Lucía Guillén, Vanesa Agulló, Félix Gutiérrez, Javier García-Abellán, Ángela Botella, and Sergio Padilla
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0301 basic medicine ,Male ,Neutrophils ,Organ Dysfunction Scores ,lcsh:Medicine ,chemistry.chemical_compound ,0302 clinical medicine ,Medicine ,Lymphocytes ,lcsh:Science ,Aged, 80 and over ,Multidisciplinary ,biology ,Middle Aged ,Cytokine release syndrome ,C-Reactive Protein ,Treatment Outcome ,030220 oncology & carcinogenesis ,Monoclonal ,Infectious diseases ,SOFA score ,Female ,Coronavirus Infections ,medicine.medical_specialty ,Pneumonia, Viral ,Antibodies, Monoclonal, Humanized ,Article ,03 medical and health sciences ,Betacoronavirus ,Tocilizumab ,Internal medicine ,Humans ,Lymphocyte Count ,Interleukin 6 ,Pandemics ,Aged ,business.industry ,Interleukin-6 ,SARS-CoV-2 ,lcsh:R ,Health care ,COVID-19 ,medicine.disease ,Receptors, Interleukin-6 ,Blockade ,COVID-19 Drug Treatment ,030104 developmental biology ,Blood pressure ,chemistry ,Spain ,biology.protein ,lcsh:Q ,business ,Cytokine storm ,Biomarkers ,Follow-Up Studies - Abstract
Excessive interleukin-6 signaling is a key factor contributing to the cytokine release syndrome implicated in clinical manifestations of COVID-19. Preliminary results suggest that tocilizumab, a humanized monoclonal anti-interleukin-6 receptor antibody, may be beneficial in severely ill patients, but no data are available on earlier stages of disease. An anticipated blockade of interleukin-6 might hypothetically prevent the catastrophic consequences of the overt cytokine storm. We evaluated early-given tocilizumab in patients hospitalized with COVID-19, and identified outcome predictors. Consecutive patients with initial Sequential-Organ-Failure-Assessment (SOFA) score
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- 2020
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19. Publisher Correction: Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system
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Israel S. Fernández, Tyler S. Halpin-Healy, Sanne E. Klompe, and Samuel H. Sternberg
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Transposable element ,Dna targeting ,Multidisciplinary ,CRISPR ,Computational biology ,Biology - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2020
20. Fingers zipped up or baby mittens? Two main tetrapod strategies to return to the sea
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Marta S. Fernández, Lisandro Campos, Lucia Alzugaray, Mónica Romina Buono, Florencia Paolucci, Yanina Herrera, Evangelos Vlachos, and Juliana Sterli
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0106 biological sciences ,Marine turtles ,Anatomical structures ,Biology ,010603 evolutionary biology ,01 natural sciences ,Paleontología ,Ciencias de la Tierra y relacionadas con el Medio Ambiente ,purl.org/becyt/ford/1 [https] ,03 medical and health sciences ,purl.org/becyt/ford/1.5 [https] ,Limb-to-fin transitions ,Marine reptiles ,Tetrapod (structure) ,medicine ,Animals ,030304 developmental biology ,0303 health sciences ,Marine crocodiles ,Fossils ,Palaeontology ,Fishes ,Reptiles ,Extremities ,Agricultural and Biological Sciences (miscellaneous) ,Biological Evolution ,Skull ,medicine.anatomical_structure ,Evolutionary biology ,Homogeneous ,Marine mammals ,Vertebrates ,General Agricultural and Biological Sciences ,Anatomical networks ,CIENCIAS NATURALES Y EXACTAS - Abstract
The application of network methodology in anatomical structures offers new insights on the connectivity pattern of skull bones, skeletal elements and their muscles. Anatomical networks helped to improve our understanding of the water-to-land transition and how the pectoral fins were transformed into limbs via their modular disintegration. Here, we apply the same methodology to tetrapods secondarily adapted to the marine environment. We find that these animals achieved their return to the sea with four types of morphological changes, which can be grouped into two different main strategies. In all marine mammals and the majority of the reptiles, the fin is formed by the persistence of superficial and interdigital connective tissues, like a 'baby mitten', whereas the underlying connectivity pattern of the bones does not influence the formation of the forefin. On the contrary, ichthyosaurs 'zipped up' their fingers and transformed their digits into carpal-like elements, forming a homogeneous and better-integrated forefin. These strategies led these vertebrates into three different macroevolutionary paths exploring the possible spectrum of morphological adaptations., Facultad de Ciencias Naturales y Museo
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- 2020
21. A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate
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Israel S. Fernández, Vera P. Pisareva, Carlos F. Rodríguez, Andrey V. Pisarev, Ritam Neupane, and United States Department of Health & Human Services National Institutes of Health (NIH) - USA
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Models, Molecular ,Untranslated region ,Five prime untranslated region ,Protein Conformation ,Structural Biology and Molecular Biophysics ,Eukaryotic Initiation Factor-3 ,viruses ,translation ,PROTEIN ,IRES ,Translational regulation ,Ribosome Subunits ,Protein biosynthesis ,CRYO-EM STRUCTURE ,RIBOSOME ,Biology (General) ,0303 health sciences ,REFINEMENT ,General Neuroscience ,030302 biochemistry & molecular biology ,Translation (biology) ,General Medicine ,EUKARYOTIC TRANSLATION INITIATION ,ribosome ,Dicistroviridae ,Medicine ,RNA, Viral ,VIRUS ,Translation initiation complex ,Research Article ,Human ,QH301-705.5 ,OPEN READING FRAMES ,Science ,Computational biology ,Internal Ribosome Entry Sites ,Biology ,General Biochemistry, Genetics and Molecular Biology ,REINITIATION ,03 medical and health sciences ,Eukaryotic translation ,Animals ,Humans ,Initiation factor ,RNA, Messenger ,030304 developmental biology ,General Immunology and Microbiology ,ELONGATION ,Cryoelectron Microscopy ,RNA ,Internal ribosome entry site ,Protein Biosynthesis ,SCANNING MECHANISM ,5' Untranslated Regions - Abstract
RNA viruses are pervasive entities in the biosphere with significant impact in human health and economically important livestock. As strict cellular parasites, RNA viruses abuse host resources, redirecting them towards viral replication needs. Taking control of the cellular apparatus for protein production is a requirement for virus progression and diverse strategies of cellular mimicry and/or ribosome hijacking evolved to ensure this control. Especially in complex eukaryotes, translation is a sophisticated process, with multiple mechanisms acting on ribosomes and mRNAs. The initiation stage of translation is specially regulated, involving multiple steps and the engagement of numerous initiation factors some of them of high complexity. The use of structured RNA sequences, called Internal Ribosomal Entry Sites (IRES), in viral RNAs is a widespread strategy for the exploitation of eukaryotic initiation. Using a combination of electron cryo-microscopy (cryo-EM) and reconstituted translation initiation assays with native components, we characterized how a novel IRES at the 5’-UTR of a viral RNA assembles a functional translation initiation complex via an uAUG intermediate, redirecting the cellular machinery for protein production towards viral messengers. The IRES features a novel extended, multi-domain architecture, circling the 40S head, leveraging ribosomal sites not previously described to be exploited by any IRES. The structures and accompanying functional data, illustrate the importance of 5’-UTR regions in translation regulation and underline the relevance of the untapped diversity of viral IRESs. Given the large number of new viruses metagenomic studies have uncovered, the quantity and diversity of mechanisms for translation hijacking encrypted in viral sequences may be seriously underestimated. Exploring this diversity could reveal novel avenues in the fight against these molecular pathogens.
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- 2020
22. Biopelículas y persistencia microbiana en la industria alimentaria
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Paula Fernández-Gómez, Miguel Prieto, Pablo S. Fernández-Escámez, Mercedes López, and Avelino Alvarez-Ordóñez
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Cultural Studies ,Sociology and Political Science ,Microorganism ,Biology ,microbial ecology ,General Works ,03 medical and health sciences ,procesado de alimentos ,persistencia ,food processing ,Food science ,030304 developmental biology ,0303 health sciences ,030306 microbiology ,business.industry ,General Arts and Humanities ,Biofilm ,persistence ,biochemical phenomena, metabolism, and nutrition ,Food safety ,ecología microbiana ,Novel agents ,Food processing ,biofilms ,Spoilage microorganisms ,Food quality ,business ,control - Abstract
This review examines the importance that microbial communities colonizing food processing environments in the form of biofilms have on food safety and food quality. The focus is on biofilms of undesired microorganisms, i.e. pathogenic and spoilage microorganisms. Information is presented on intraspecies variability in biofilm formation, biofilm ecology and architecture and the factors influencing their formation. Finally, research on novel agents or strategies for the control of biofilm formation or its removal is summarized., Este artículo de revisión examina la importancia que tienen las comunidades microbianas que colonizan los ambientes y equipos de procesado de alimentos formando biopelículas o biofilms en la persistencia microbiana en la industria alimentaria y consecuentemente, en la seguridad y la calidad de los alimentos. La atención se centra especialmente en biopelículas formadas por microorganismos no deseados, es decir, microorganismos alterantes y patógenos. Se presenta información sobre la variabilidad intraespecífica en la formación, la ecología y la arquitectura de las biopelículas, y los factores que influyen en su formación. Asimismo, se resume la información disponible sobre nuevos agentes o estrategias para el control de la formación o eliminación de biopelículas.
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- 2020
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23. Microbiological and process variability using biological indicators of inactivation (BIIs) based on Bacillus cereus spores of food and fish-based animal by-products to evaluate microwave heating in a pilot plant
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Alberto Garre, Paula M. Periago, Pablo S. Fernández, Alejandro Díaz-Morcillo, Juan D. Reverte-Orts, Arturo Esnoz, J.L. Pedreno-Molina, and Alejandro Acosta
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030309 nutrition & dietetics ,Bacillus cereus ,Pasteurization ,law.invention ,Matrix (chemical analysis) ,Heating ,03 medical and health sciences ,0404 agricultural biotechnology ,law ,Animals ,Food science ,Microwaves ,Spores, Bacterial ,0303 health sciences ,Animal by-products ,biology ,Environmental Biomarkers ,04 agricultural and veterinary sciences ,biology.organism_classification ,040401 food science ,Spore ,Microbial inactivation ,Pilot plant ,Microwave heating ,Environmental science ,%22">Fish ,Biological variability ,Cavity design ,Microwave ,Biological validation ,Food Science - Abstract
Microwave processing can be a valid alternative to conventional heating for different types of products. It enables a more efficient heat transfer in the food matrix, resulting in higher quality products. However, for many food products a uniform temperature distribution is not possible because of heterogeneities in their physical properties and non-uniformtiy in the electric field pattern. Hence, the effectiveness of microwave inactivation treatments is influenced by both intrinsic (differences between cells) and extrinsic variability (non-uniform temperature). Interpreting the results of the process and considering its impact on microbial inactivation is essential to ensure effective and efficient processing. In this work, we quantified the variability in microbial inactivation attained in a microwave pasteurization treatment with a tunnel configuration at pilot-plant scale. The configuration of the equipment makes it impossible to measure the product temperature during treatment. For that reason, variability in microbial counts was measured using Biological Inactivation Indicators (BIIs) based on spherical particles of alginate inoculated with spores of Bacillus spp. The stability of the BIIs and the uncertainty associated to them was assessed using preliminary experiments in a thermoresistometer. Then, they were introduced in the food product to analyse the microbial inactivation in different points of the products during the microwave treatment. Experiments were made in a vegetable soup and a fish-based animal by-product (F-BP). The results show that the variation in the microbial counts was higher than expected based on the biological variability estimated in the thermoresistometer and the uncertainty of the BIIs. This is due to heterogeneities in the temperature field (measured using a thermographic camera), which were higher in the F-BP than in the vegetable soup. Therefore, for the process studied, extrinsic variability was more relevant than intrinsic variability. The methodology presented in this work can be a valid method to evaluate pasteurization treatments of foods processed by heating, providing valuable information of the microbial inactivation achieved. It can contribute to design microwave processes for different types of products and for product optimization.
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- 2020
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24. Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation
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Bridget Y. Huang, Israel S. Fernández, and National Institutes of Health (US)
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Translation ,GTP' ,Saccharomyces cerevisiae ,translation ,GTPase ,Ribosome ,Biochemistry ,03 medical and health sciences ,Eukaryotic translation ,Protein biosynthesis ,P-site ,Initiation ,eIF5B ,Tyrosine ,Eukaryotic Initiation Factors ,Peptide Chain Initiation, Translational ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Binding Sites ,biology ,Chemistry ,Hydrolysis ,030302 biochemistry & molecular biology ,Cryoelectron Microscopy ,Biological Sciences ,biology.organism_classification ,3. Good health ,Cell biology ,initiation ,ribosome ,Mutagenesis, Site-Directed ,Guanosine Triphosphate ,Ribosomes ,Protein Binding - Abstract
© 2020 the Author(s)., Translation initiation controls protein synthesis by regulating the delivery of the first aminoacyl-tRNA to messenger RNAs (mRNAs). In eukaryotes, initiation is sophisticated, requiring dozens of protein factors and 2 GTP-regulated steps. The GTPase eIF5B gates progression to elongation during the second GTP-regulated step. Using electron cryomicroscopy (cryo-EM), we imaged an in vitro initiation reaction which is set up with purified yeast components and designed to stall with eIF5B and a nonhydrolyzable GTP analog. A high-resolution reconstruction of a “dead-end” intermediate at 3.6 Å allowed us to visualize eIF5B in its ribosome-bound conformation. We identified a stretch of residues in eIF5B, located close to the γ-phosphate of GTP and centered around the universally conserved tyrosine 837 (Saccharomyces cerevisiae numbering), that contacts the catalytic histidine of eIF5B (H480). Site-directed mutagenesis confirmed the essential role that these residues play in regulating ribosome binding, GTP hydrolysis, and translation initiation both in vitro and in vivo. Our results illustrate how eIF5B transmits the presence of a properly delivered initiator aminoacyl-tRNA at the P site to the distant GTPase center through interdomain communications and underscore the importance of the multidomain architecture in translation factors to sense and communicate ribosomal states., We thank the Precision Biomolecular Characterization Facility at Columbia University for technical support and access to the CD spectrometer, which is supported by NIH Award 1S10OD025102-01.
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- 2020
25. Infectious spondylitis with pathology mimicking that of tuberculosis in a cervical vertebra of a plesiosaur from the Upper Cretaceous of Patagonia, Argentina
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Marianella Talevi, Bruce M. Rothschild, Matías Mitidieri, and Marta S. Fernández
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Pathology ,medicine.medical_specialty ,Rib cage ,Tuberculosis ,Inflammatory arthritis ,Paleontology ,Biology ,medicine.disease ,Skeleton (computer programming) ,Cretaceous ,Vertebra ,medicine.anatomical_structure ,Marine Reptile ,Patagonia ,medicine ,Ciencias Exactas y Naturales ,Pathological ,Spondylitis ,Cervical vertebrae - Abstract
Fil: Talevi, Marianella. Universidad Nacional de Río Negro, Instituto de Investigación en Paleobiología y Geología. Río Negro, Argentina. Fil: Rothschild, Bruce. Carnegie Museum of Natural History. Estados Unidos. Fil: Mitidieri, Matías. Universidad Nacional de Río Negro, Instituto de Investigación en Paleobiología y Geología. Río Negro, Argentina. Fil: Fernández, Marta Susana. CONICET, División Paleontología Vertebrados, Facultad de Ciencias Naturales y Museo. La Plata, Argentina. Paleopathological studies have been used to understand the history of injury and disease in extinct populations, their putative causes and, on this basis, to infer paleoecology and behavioral aspects. The most common pathologies reported in the zoological/paleontological record are traumatic injuries, post-traumatic malformations, inflammatory arthritis, infection and congenital defects. Although pathologies in plesiosaurs are recognized since the 1870s, reports of infectious disease are comparatively scarce. Here we report the pathological cervical vertebra of a plesiosaur recovered from the Upper Cretaceous of Argentina. The anterior external surface shows an elliptical, subchondral erosion with new bone formation and slight adjacent filigree reaction. The right anteroventral surface of the centrum bears erosive processes with bone reaction and alterations that have the appearance produced by space-occupied masses. On the left anteroventral surface of the centrum, there are abnormal vascular channels, associated with a groove just ventral to the articular surface. The combination of these features indicates that the pathological aspect of the vertebra is due to an infection. The pattern of bone abnormalities is compatible with those described in Pleistocene mammals affected by the granulomatous tuberculosis infection and with the abnormal ribs and cervical vertebrae of an eosauropterygian from the Triassic. The case reported herein represents the first record of tuberculosis-like infection in a plesiosaur. As the vertebra was not part of an associated skeleton, we cannot infer if the cause of death could have been related to the compromised hunting ability (due to limited neck mobility) or the result of infection-related organ failure.
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- 2021
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26. Bridging the southern gap: First definitive evidence of Late Jurassic ichthyosaurs from Antarctica and their dispersion routes
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Soledad Gouiric-Cavalli, Yanina Herrera, Jose Patricio O'gorman, Marianella Talevi, Sergio Santillana, Juan J. Moly, L. Acosta-Burlaille, Marcelo Alfredo Reguero, Marta S. Fernández, Andrea Concheyro, and Lisandro Campos
- Subjects
010506 paleontology ,Ophthalmosauridae ,biology ,Geology ,Jurassic ,010502 geochemistry & geophysics ,biology.organism_classification ,01 natural sciences ,Cretaceous ,Mozambique Corridor ,Palaeobiogeography ,Gondwana ,Paleontology ,Ichthyosaur ,Madagascar ,Biological dispersal ,Ciencias Exactas y Naturales ,Marine Reptiles ,0105 earth and related environmental sciences ,Earth-Surface Processes - Abstract
Fil: Campos, Lisandro. División Paleontología Vertebrados, Unidades de Investigación Anexo Museo, Facultad de Ciencias, Naturales y Museo. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: Fernandez, Marta. División Paleontología Vertebrados, Unidades de Investigación Anexo Museo, Facultad de Ciencias, Naturales y Museo. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: Herrera, Yanina. División Paleontología Vertebrados, Unidades de Investigación Anexo Museo, Facultad de Ciencias, Naturales y Museo. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: Talevi, Marianella. Universidad Nacional de Río Negro, Instituto de Investigación en Paleobiología y Geología. Río Negro, Argentina. Fil: Concheyro, Andrea. Instituto de Estudios Andinos Don Pablo Groeber, CONICET and Universidad de Buenos Aires. Instituto Antártico Argentino. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: Gouiric-Cavalli, Soledad. División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, UNLP. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: O'Gorman, José. División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, UNLP. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. Fil: Santillana, Sergio. Instituto Antártico Argentino. Argentina. Fil: Acosta-Burlaille, Leonel. División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, UNLP. Argentina. Fil: Molly, Juan. División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, UNLP. Argentina. Fil: Reguero, Marcelo. División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, UNLP. Instituto Antártico Argentino. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Argentina. New ichthyosaur remains from the Upper Jurassic of Antarctica, recovered from the Ameghino (=Nordenskjold) ¨Formation are described. These three new specimens represent the first unambiguous records of ichthyosaurs in this continent. Based on the morphology of the humerus, we refer one of the specimens to Ophthalmosauridae, the dominant ichthyosaur forms from the Middle Jurassic until the extinction of the group during the Late Cretaceous. In addition to the new Antarctic records, we re-evaluate ichthyosaur remains of two individuals from the Upper Jurassic of Madagascar and describe a third new specimen, which is the most complete ichthyosaur from this region of Gondwanaland. These findings provide new insights into the role of the seaways opened during the Jurassic in the dispersion of ichthyosaurs, particularly ophthalmosaurids. Antarctic and Malagasian ichthyosaurs bring additional support to the hypothesis of the Mozambique Corridor acting as a dispersal route connecting the Tethys Sea and the southern Pacific margins of Gondwana, at least since the Late Jurassic.
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- 2021
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27. Bioelectrochemical system for the biooxidation of a chalcopyrite concentrate by acidophilic bacteria coupled to energy current generation and cathodic copper recovery
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José S. Fernández-Reyes and J. Viridiana García-Meza
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0301 basic medicine ,Bioelectric Energy Sources ,Inorganic chemistry ,chemistry.chemical_element ,Bioengineering ,02 engineering and technology ,Applied Microbiology and Biotechnology ,020501 mining & metallurgy ,03 medical and health sciences ,Acidithiobacillus thiooxidans ,Bioleaching ,Oxidizing agent ,Electrodes ,Bioelectrogenesis ,biology ,Chalcopyrite ,Metallurgy ,General Medicine ,biology.organism_classification ,Copper ,Sulfur ,Anode ,030104 developmental biology ,0205 materials engineering ,chemistry ,visual_art ,visual_art.visual_art_medium ,Oxidation-Reduction ,Biotechnology - Abstract
To develop a bioelectrochemical system (BES) to couple the biooxidation of chalcopyrite (CuFeS2), bioelectrogenesis, and the cathodic Cu2+ reduction, bioanodes of acidophilic (pH
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- 2017
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28. Thermal processing of live bivalve molluscs for controlling viruses: On the need for a risk-based design
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Pablo S. Fernández-Escámez, Elisabetta Suffredini, Roland Lindqvist, David N. Lees, Michael O'Mahony, José Cortiñas Abrahantes, Kostas Koutsoumanis, Winy Messens, and Emmanouil Chantzis
- Subjects
0301 basic medicine ,Food Safety ,Hot Temperature ,Food Handling ,viruses ,030106 microbiology ,virus diseases ,General Medicine ,Biology ,medicine.disease_cause ,digestive system diseases ,Industrial and Manufacturing Engineering ,Hepatitis a virus ,Bivalvia ,Fishery ,03 medical and health sciences ,Environmental health ,Viruses ,Norovirus ,medicine ,Animals ,Risk based design ,Food Science - Abstract
Norovirus (NoV) and Hepatitis A virus (HAV) are the most important viral hazards associated with human illness following consumption of contaminated bivalve molluscs. The effectiveness of the current EU criteria for heat processing of bivalve molluscs (i.e. raising the temperature of the internal mollusc flesh to at least 90°C for a minimum of 90 seconds) was evaluated using predictive microbiology. A HAV thermal inactivation model was developed based on literature data in mollusc matrices during isothermal heat treatment. Application of the developed model demonstrated that the 90°C-90 s requirement may lead to significantly different virus inactivation depending on the commercial process design. This shows the need for the establishment of a Performance Criterion for bivalve molluscs heat processing which will assure a common specified level of consumer protection. A risk-based approach is described that allows for an effective processing design providing a more transparent and objective relation between the thermal processing targets and public health. Model simulations demonstrate that the F-value is a more appropriate Process Criterion than a single time-temperature combination since it enables the food business operators to design a process that is compliant with the safety requirements while at the same time achieving a desired product quality.
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- 2017
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29. A new elasmosaurid from the upper Maastrichtian López de Bertodano Formation: new data on weddellonectian diversity
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Marta S. Fernández, Jose Patricio O'gorman, Karen Magalí Panzeri, Sergio Santillana, Marcelo Alfredo Reguero, and Juan J. Moly
- Subjects
010506 paleontology ,Lopez de Bertodano ,biology ,Paleontology ,marine reptiles ,010502 geochemistry & geophysics ,biology.organism_classification ,01 natural sciences ,Ciencias de la Tierra y relacionadas con el Medio Ambiente ,Plesiosauria ,Elasmosauridae ,Marine reptiles ,weddellonectia ,Ciencias Naturales ,Weddellonectia ,Meteorología y Ciencias Atmosféricas ,López de Bertodano ,CIENCIAS NATURALES Y EXACTAS ,Ecology, Evolution, Behavior and Systematics ,Geology ,0105 earth and related environmental sciences - Abstract
Elasmosaurids are one of the most frequently recorded marine reptiles from the Weddellian Province (Patagonia, Western Antarctica and New Zealand). Improvements in our knowledge of elasmosaurid diversity have been problematic because of their conservative postcranial morphology. However, recent studies have helped to improved our understanding of the diversity of this group. Here, a new elasmosaurid specimen from the upper Maatrichtian horizons of the López de Bertodano Formation, Antarctica, MLP 14-I-20-16, is described. MLP 14-I-20-16 is one of the youngest non-aristonectine weddellonectian elasmosaurids from Antarctica. We confirm the coexistence of aristonectine and non-aristonectine elasmosaurids in Antarctica until the end of the Cretaceous. MLP 14-I-20-16 shows distinctive short and broad posterior cervical vertebrae, a feature only shared among the weddellonectian elasmosaurids by the Maastrichtian Morenosaurus stocki, although the same vertebral proportions are also recorded for the giant Cenomanian elasmosaurids Thalassomedon haningtoni. Comparison between MLP 14-I-20-16 and other elasmosaurids from the Maastrichtian of Antarctica indicates that at least two different non-aristonectine elasmosaurids were present in Antarctica during the late Maastrichtian., Facultad de Ciencias Naturales y Museo
- Published
- 2017
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30. Chronic radiation exposure of neuroblastoma cells reduces nMYC copy number
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Reuben Antony, Julian J. Lin, Libes Jaime, Karen S. Fernández, Pushpa A. Joseph, Christopher S. Gondi, and Manu Gnanamony
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0301 basic medicine ,Cancer Research ,medicine.medical_treatment ,Biology ,neuroblastoma ,03 medical and health sciences ,0302 clinical medicine ,copy number ,Neuroblastoma ,v-Myc avian myelocytomatosis viral oncogene neuroblastoma-derived homolog ,medicine ,Oncogene ,Chronic radiation syndrome ,Cancer ,Articles ,Cell cycle ,medicine.disease ,Molecular biology ,3. Good health ,radiation ,Radiation therapy ,030104 developmental biology ,Real-time polymerase chain reaction ,Oncology ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research - Abstract
Neuroblastoma accounts for >15% of cancer-associated mortalities of children in the USA. Despite aggressive treatment regimens, the long-term survival for these children remains
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- 2017
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31. Neuroanatomy of the vertebral column of Vegasaurus molyi (Elasmosauridae) with comments on the cervico-dorsal limit in plesiosaurs
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Marta S. Fernández and Jose Patricio O'gorman
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0106 biological sciences ,010506 paleontology ,Axial skeleton ,food.ingredient ,Pectoral girdle ,biology ,Paleontology ,Anatomy ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Trunk ,Elasmosauridae ,medicine.anatomical_structure ,food ,Polycotylidae ,medicine ,Vegasaurus ,Brachial plexus ,Vertebral column ,0105 earth and related environmental sciences - Abstract
The evolution of the axial skeleton of vertebrates, particularly regionalization and the changes in the limits of each region is yet to be completely understood. The features of this process are more difficult to follow in groups with strong changes in the number of vertebrae as is the case of plesiosaurs. In this work we record the osseous correlates of the nervous system housed in the neural channel along the vertebral column of the elasmosaurid Vegasaurus molyi , from the lower Maastrichtian levels of the Snow Hill Island Formation (Antarctica). The new data allows inference of the position of the brachial plexus (i.e. the innervation of the pectoral girdle and anterior limbs), which in turn allows identification of the position of the pectoral girdle and the homology of the transitional “pectoral” region and the anterior dorsal (=trunk) vertebrae. The results indicate that in Vegasaurus molyi the pectoral girdle is at the level of the so called “pectoral” region, and that the pectoral region is homologous to the anterior trunk vertebrae of other Sauropsida. Additionally, the comparison with other published results of polycotylids showing differences with V . molyi suggesting an interesting difference in the pattern of vertebral column regionalization among plesiosaurs.
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- 2017
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32. SPARC overexpression suppresses radiation-induced HSP27 and induces the collapse of mitochondrial Δψ in neuroblastoma cells
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Manu Gnanamony, Reuben Antony, Pushpa A. Joseph, Christopher S. Gondi, Jerusha Boyineini, Smita Tanpure, Jaime Libes, Julian J. Lin, Karen S. Fernández, and David M. Pinson
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0301 basic medicine ,Cancer Research ,Cell ,HSP27 ,Mitochondrion ,neuroblastoma ,03 medical and health sciences ,0302 clinical medicine ,Hsp27 ,Neuroblastoma ,medicine ,biology ,Oncogene ,SPARC ,Articles ,Cell cycle ,medicine.disease ,Cell biology ,mitochondria ,radiation ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Apoptosis ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Signal transduction - Abstract
Neuroblastoma is the cause of >15% of cancer-associated mortality in children in the USA. Despite aggressive treatment regimens, the long-term survival rate for these children remains at
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- 2017
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33. Occurrence of Torvoneustes (Crocodylomorpha, Metriorhynchidae) in marine Jurassic deposits of Oaxaca, Mexico
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Yanina Herrera, Marta S. Fernández, Jair Israel Barrientos-Lara, and Jesús Alvarado-Ortega
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0106 biological sciences ,010506 paleontology ,SABINAL FORMATION ,PLESIOSAURUS MEXICANUS ,Crocodylomorpha ,010603 evolutionary biology ,01 natural sciences ,TORVONEUSTES ,purl.org/becyt/ford/1 [https] ,Plesiosaurus mexicanus ,purl.org/becyt/ford/1.5 [https] ,Paleontology ,Sabinal formation ,Torvoneustes ,Metriorhynchidae ,Ciencias Naturales ,0105 earth and related environmental sciences ,biology ,TLAXIACO BASIN ,PALEONTOLOGIA ,biology.organism_classification ,HISPANIC CORRIDOR ,Tlaxiaco basin ,Kimmeridgian ,Hispanic corridor ,KIMMERIDGIAN ,Geology - Abstract
IGM 9026 is a singular fossil collected at the beginning of the 20th century in an improperly documented site within the Tlaxiaco Basin, near to Tlaxiaco town, Oaxaca, Mexico. The age of the site was suggested as being early Cretaceous. This specimen is the holotype of Plesiosaurus (Polypticodon) mexicanus, which later was identified as a possible late Jurassic marine crocodylomorph of the family Metriorhynchidae, and consequently it was referred as ?Cricosaurus mexicanus. The present study provides a re-description of this fossil based on a microscopic analysis and the use of white and UV lights; these analyses led to the discovery of peculiar dental characters diagnostic of the genus Torvoneustes. This finding supports the re-classification of IGM 9026 under a new nominal combination as Torvoneustes mexicanus. Along the Tlaxiaco Basin, the fossil preservation mode and lithological composition observed in IGM 9026 only occur in the marine vertebrates recently discovered in Yosobé, a Kimmeridgian shale outcrop characterized by clay calcareous nodules that belong to the Sabinal Formation, near Tlaxiaco town. This peculiarity suggests that T. mexicanus could represent an additional element of the Kimmeridgian vertebrate assemblage recovered in this geological unit. The two nominal species of Torvoneustes were collected in Kimmeridgian marine deposits of England; hence, this finding expands the geographical distribution of Torvoneustes all along the Tethys Sea, from its Eastern/European to western/Caribbean domains., Facultad de Ciencias Naturales y Museo
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- 2017
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34. SARS-CoV-2 infection associated with diplopia and anti-acetylcholine receptor antibodies
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S. Fernández Menéndez, C. Suárez Cuervo, and Á.I. Pérez Álvarez
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Diplopia ,myasthenia gravis ,2019-20 coronavirus outbreak ,biology ,SARS-CoV-2 ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,COVID-19 ,biology.organism_classification ,Virology ,Article ,lcsh:RC346-429 ,neurological complications ,peripheral nervous system ,Pandemic ,biology.protein ,Medicine ,Antibody ,medicine.symptom ,business ,Betacoronavirus ,Coronavirus Infections ,lcsh:Neurology. Diseases of the nervous system ,Acetylcholine receptor - Published
- 2020
35. Hallazgos Paleontológicos en la Formación Chorrillo (Campaniano-Maastrichtiano, Cretácico Superior), Provincia de Santa Cruz, Patagonia, Argentina
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Martín D. Ezcurra, Federico L. Agnolin, Federico Brissón-Eli, Julia D´Angelo, Mariela S. Fernández, Mauricio A. Cerroni, Fátima Fernanda Brito, Sergio Eduardo Miquel, Adriel Roberto Gentil, Matías J. Motta, Gastón E. Lo Coco, Ezequiel Ignacio Vera, Sergio Bogan, Alexis M. Aranciaga-Rolando, Jordi A. Garcia-Marsà, Valeria Susana Perez Loinaze, Agustín G. Martinelli, Sebastián Rozadilla, Leonardo T. Salgado, Fernando E. Novas, Gerardo Álvarez-Herrera, and Nicolás Roberto Chimento
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010506 paleontology ,Titanosaur ,010502 geochemistry & geophysics ,Formación Chorrillo ,01 natural sciences ,Paleontología ,Ciencias de la Tierra y relacionadas con el Medio Ambiente ,purl.org/becyt/ford/1 [https] ,purl.org/becyt/ford/1.5 [https] ,Paleontology ,FOSSILS ,SOUTHERN PATAGONIA ,CHORRILLO FORMATION ,Saltasaurinae ,Patagonia austral ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,biology ,biology.organism_classification ,Mosasaur ,Cretaceous ,LATE CRETACEOUS ,Abelisauridae ,Geography ,Neognathae ,Animal Science and Zoology ,Cretácico Tardío ,Fósiles ,Calyptocephalellidae ,Iguanodontia ,CIENCIAS NATURALES Y EXACTAS - Abstract
The first fossil remains of vertebrates, invertebrates, plants and palynomorphs of the Chorrillo Formation (Austral Basin), about 30km to the SW of the town of El Calafate (Province of Santa Cruz), are described. Fossils include the elasmarian (basal Iguanodontia) Isasicursor santacrucensis gen. et sp. nov., the large titanosaur Nullotitan glaciaris gen. et sp. nov., both large and small Megaraptoridae indet., and fragments of sauropod and theropod eggshells. The list of vertebrates is also composed by the Neognathae Kookne yeutensis gen. et sp. nov., two isolated caudal vertebrae of Mammalia indet., and isolated teeth of a large mosasaur. Remains of fishes, anurans, turtles, and snakes are represented by fragmentary material of low taxonomical value, with the exception of remains belonging to Calyptocephalellidae. On the other hand, a remarkable diversity of terrestrial and freshwater gastropods has been documented, as well as fossil woods and palinological assemblages. The Chorrillo Formation continues south, in the Las Chinas River valley, southern Chile, where it is called Dorotea Formation. Both units share in their lower two thirds abundant materials of titanosaurs, whose remains cease to appear in the upper third, registering only elasmarians (Chorrillo Formation) and hadrosaurs (Dorotea Formation). Above both units there are levels with remains of invertebrates and marine reptiles. It is striking that the dinosaurs of the lower two thirds of the Chorrillo and Dorotea formations are represented by large basal titanosaurs and Megaraptoridae coelurosaurs, being the Saltasaurinae and Aeolosaurinae sauropods and Abelisauridae theropods totally absent. In contrast, these taxa are dominant components in sedimentary units of central and northern Patagonia (e.g., Allen, Los Alamitos, La Colonia formations). Such differences could reflect, in part, a greater antiquity (i.e., late Campanian-early Maastrichtian) for the Chorrillo fossils, or, more probably, different environmental conditions. Thus, knowledge of the biota of the southern tip of Patagonia is expanded, particularly those temporarily close to the K-Pg boundary. Fil: Novas, Fernando Emilio. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Agnolin, Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina. Universidad Maimónides; Argentina. Fundación de Historia Natural Félix de Azara; Argentina Fil: Rozadilla, Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Aranciaga Rolando, Alexis Mauro. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Brissón Egli, Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Motta, Matias Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Cerroni, Mauricio Andrés. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Ezcurra, Martin Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Martinelli, Agustín Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: D'angelo, Julia Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Alvarez Herrera, Gerardo Paulino. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Gentil, Adriel Roberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Bogan, Sergio. Universidad Maimónides; Argentina Fil: Chimento, Nicolás Roberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: García Marsa, Jordi Alexis. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Lo Coco, Gastón Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Miquel, Sergio Eduardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Brito, Fátima Fernanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Vera, Ezequiel Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina. Universidad de Buenos Aires; Argentina Fil: Perez Loinaze, Valeria Susana. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Fernández, Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina Fil: Salgado, Leonardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigación en Paleobiología y Geología; Argentina. Universidad Nacional de Río Negro; Argentina
- Published
- 2019
36. A new ichthyosaur from the Late Jurassic of north-west Patagonia (Argentina) and its significance for the evolution of the narial complex of the ophthalmosaurids
- Author
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Yanina Herrera, Marta S. Fernández, and Lisandro Campos
- Subjects
0106 biological sciences ,010506 paleontology ,Paleontology ,biology ,North west ,Ichthyosaur ,Animal Science and Zoology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences - Abstract
Ophthalmosaurids were highly derived and the youngest clade of ichthyosaurs. Their evolutionary history comprises ~76 Myr (from the early Middle Jurassic to the final extinction of the group at the Cenomanian–Turonian boundary). Fossil records indicate that soon after they emerged they achieved a widespread geographical distribution. Analyses of disparity based on craniodental morphologies, and the co-occurrence of different bone histology and microstructure among the members of the group, indicate that ophthalmosaurids are not only taxonomically but also ecologically diverse. A region of the skull that is particularly complex among ophthalmosaurid taxa is the external nares and surrounding areas, but there have been few attempts to explore this topic. We describe a new ophthalmosaurid from the Late Jurassic of Patagonia (Argentina) in the genus Arthropterygius and analyse its phylogenetic relationships. A detailed exploration of the skull, using computed tomography, reveals the division of the external nares by means of a stout bony pillar. This condition was previously known only in some Cretaceous forms and, within a phylogenetic framework, its distribution among ophthalmosaurids indicates that this morphology was the result of convergent evolution. Based on available data on extant (and some extinct) forms, we explore putative soft structures involved in the narial region. We propose that the division of the external nares (complete or partly osseous) was related functionally to the separation of the air passage from the outlet of nasal salt glands in such a way that the salt glands could be evacuated underwater, while the air passage could be closed by a valvular system.
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- 2019
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37. A Lowly Digestible-Starch Diet after Weaning Enhances Exogenous Glucose Oxidation Rate in Female, but Not in Male, Mice
- Author
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Nils Billecke, Evert M. van Schothorst, Hans J. M. Swarts, Annemarie Oosting, Jaap Keijer, José M. S. Fernández-Calleja, and Lianne M. S. Bouwman
- Subjects
0301 basic medicine ,Blood Glucose ,Male ,Novel Foods & Agrochains ,Starch ,Novel Foods & Agroketens ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Bolus (medicine) ,Amylose ,C57BL mice ,amylopectin ,Amylase ,BU Toxicology, Novel Foods & Agrochains ,Respiratory exchange ratio ,2. Zero hunger ,indirect calorimetry ,Nutrition and Dietetics ,biology ,Chemistry ,BU Toxicology ,13C-starch ,food and beverages ,BU Toxicologie, Novel Foods & Agroketens ,Amylopectin ,Human and Animal Physiology ,Female ,Oxidation-Reduction ,lcsh:Nutrition. Foods and food supply ,amylase ,BU Toxicologie ,030209 endocrinology & metabolism ,lcsh:TX341-641 ,Weaning ,Carbohydrate metabolism ,Article ,03 medical and health sciences ,Animal science ,Sex Factors ,amylose ,Animals ,VLAG ,Body Weight ,Calorimetry, Indirect ,glucose oxidation ,Diet ,Mice, Inbred C57BL ,030104 developmental biology ,glycaemic index ,biology.protein ,WIAS ,Fysiologie van Mens en Dier ,Food Science - Abstract
Starches of low digestibility are associated with improved glucose metabolism. We hypothesise that a lowly digestible-starch diet (LDD) versus a highly digestible-starch diet (HDD) improves the capacity to oxidise starch, and that this is sex-dependent. Mice were fed a LDD or a HDD for 3 weeks directly after weaning. Body weight (BW), body composition (BC), and digestible energy intake (dEI) were determined weekly. At the end of the intervention period, whole-body energy expenditure (EE), respiratory exchange ratio (RER), hydrogen production, and the oxidation of an oral 13C-labelled starch bolus were measured by extended indirect calorimetry. Pancreatic amylase activity and total 13C hepatic enrichment were determined in females immediately before and 4 h after administration of the starch bolus. For both sexes, BW, BC, and basal EE and RER were not affected by the type of starch, but dEI and hydrogen production were increased by the LDD. Only in females, total carbohydrate oxidation and starch-derived glucose oxidation in response to the starch bolus were higher in LDD versus HDD mice, this was not accompanied by differences in amylase activity or hepatic partitioning of the 13C label. These results show that starch digestibility impacts glucose metabolism differently in females versus males.
- Published
- 2019
38. Thermal Resistance of Bacillus stearothermophilus Heated at High Temperatures in Different Substrates
- Author
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F. Rodrigo, M. Rodrigo, Antonio Martínez, P. S. Fernández, and María José Ocio
- Subjects
inorganic chemicals ,Mushroom ,Bacillaceae ,biology ,Chemistry ,Thermal resistance ,fungi ,Substrate (chemistry) ,biology.organism_classification ,Microbiology ,Bacillales ,Spore ,Biochemistry ,Food science ,Incubation ,Bacteria ,Food Science - Abstract
The effect of mushroom extract, with or without acidification with glucono-8-lactone, and the overnight incubation of the spores in CaCl 2 , on the heat resistance of B. stearothermophilus ATCC 12980 spores was studied. The temperature range considered was 121 to 140°C for mushroom extract and CaCl 2 and 121 to 145°C for double-distilled water as a reference substrate. The results indicated that mushroom extract without added acid significantly reduces the thermal resistance of the spores in comparison to the double-distilled water. Acidification of the mushroom extract reduces the heat resistance of spores of B. stearothermophilus at 121°C. However, above 130°C lowering of the pH did not significantly reduce the thermal resistance of the spores, and so no generalizations should be made with regard to the effect of the pH when high temperature-short time (HTST) processes are being considered. Overnight incubation in CaCl 2 and subsequent heat treatment lead to increased heat resistance at 121°C compared to that observed in double-distilled water. However, at 130°C and above CaCl 2 did not increase the apparent heat resistance of the spores.
- Published
- 2019
39. Diaphorocetus poucheti (Cetacea, Odontoceti, Physeteroidea) from Patagonia, Argentina: one of the earliest sperm whales
- Author
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Marta S. Fernández, Florencia Paolucci, Felix G. Marx, José Ignacio Cuitiño, and Mónica Romina Buono
- Subjects
0106 biological sciences ,010506 paleontology ,biology ,PHYLOGENY ,Paleontology ,Zoology ,Cetacea ,Diaphorocetus ,Zoología, Ornitología, Entomología, Etología ,Body size ,PHYSETEROIDEA ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Sperm ,ANATOMY ,Ciencias Biológicas ,BODY SIZE ,GAIMAN FORMATION ,Physeteroidea ,CIENCIAS NATURALES Y EXACTAS ,0105 earth and related environmental sciences ,MIOCENE - Abstract
Sperm whales (Physeteroidea) are the basal-most surviving lineage of odontocetes, represented today by just three highly specialized, deep-diving suction feeders. By contrast, extinct sperm whales were relatively diverse, reflecting a major Miocene diversification into various suction feeding and macroraptorial forms. The beginnings of this diversification, however, remain poorly understood. The Atlantic coast of South America provides a crucial window into early physeteroid evolution and has yielded some of the oldest species known from cranial material, Idiorophus patagonicus and Diaphorocetus poucheti – both of which are in need of re-description and phylogenetic reappraisal. Here, we re-examine Diaphorocetus in detail and, in light of its complex taxonomic history, declare it a nomen protectum. Phylogenetically, the species forms part of a polytomy including ‘Aulophyseter’ rionegresis and the two crown lineages (Physeteridae and Kogiidae) and demonstrates that facial asymmetry and a clearly defined supracranial basin have characterized this lineage for at least 20 Ma. With a total body length of 3.5–4 m, Diaphorocetus is one of the smallest physeteroids yet known. Its cranial morphology hints at an intermediate raptorial/suction feeding strategy and it has a moderately developed spermaceti organ and junk. Fil: Paolucci, Florencia. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Paleontología Vertebrados; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina Fil: Buono, Mónica Romina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Geología y Paleontología; Argentina Fil: Fernández, Marta Susana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Université de Liège; Bélgica Fil: Marx, Felix G.. Université de Liège; Bélgica. Monash University; Australia Fil: Cuitiño, José Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Geología y Paleontología; Argentina
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- 2019
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40. The Israeli Acute Paralysis Virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs
- Author
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Joachim Frank, Francisco Acosta-Reyes, Israel S. Fernández, and Ritam Neupane
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Models, Molecular ,Viral protein ,translation ,Computational biology ,Internal Ribosome Entry Sites ,medicine.disease_cause ,Ribosome ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Colony collapse disorder ,0302 clinical medicine ,Israeli acute paralysis virus ,RNA, Transfer ,Structural Biology ,Biomimetics ,medicine ,Protein biosynthesis ,Humans ,Molecular Biology ,030304 developmental biology ,Dicistroviridae ,Genetics ,0303 health sciences ,General Immunology and Microbiology ,biology ,Host (biology) ,General Neuroscience ,030302 biochemistry & molecular biology ,Cryoelectron Microscopy ,fungi ,internal ribosomal entry sites ,RNA ,Translation (biology) ,Articles ,Ribosomal RNA ,Protein Biosynthesis & Quality Control ,biology.organism_classification ,Internal ribosome entry site ,ribosome ,Protein Biosynthesis ,Nucleic Acid Conformation ,RNA, Viral ,Ribosomes ,030217 neurology & neurosurgery - Abstract
TheColonyCollapseDisorder or CCD is a multi-faceted syndrome decimating bee populations worldwide[1]. A group of viruses of the widely distributedDicistroviridaefamily have been identified as a causing agent of CCD[2]. This family of viruses employ non-coding RNA sequences, calledInternalRibosomalEntrySite (IRES), to precisely exploit the host machinery for protein production. Using single-particle cryo-electron microscopy (cryo-EM) we have characterized at high resolution how the IRES of the intergenic region of theIsraeliAcuteParalysisVirus (IAPV) captures and redirects translating ribosomes towards viral messengers. Through a series of six structures at nominal resolutions close to 3Å, we could reconstruct the trajectory of IAPV-IRES from an early small subunit recruitment to a final post-translocated state in the ribosome. An early commitment of IRES/ribosome complexes for global pre-translocation mimicry explains the high efficiency observed for this IRES. The presented structures will help guide on-going efforts directed towards fighting CCD through RNA-interference technology [3].
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- 2019
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41. A pathological scapula in a mosasaur from the upper Maastrichtian of Antarctica: Evidence of infectious arthritis and spondyloarthropathy
- Author
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Marcelo Alfredo Reguero, Marianella Talevi, Marta S. Fernández, Matías Mitidieri, and Bruce M. Rothschild
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biology ,Fossa ,Spondyloarthropathy ,Paleontology ,Anatomy ,Mosasaur ,biology.organism_classification ,medicine.disease ,Cretaceous ,purl.org/becyt/ford/1 [https] ,purl.org/becyt/ford/1.5 [https] ,Skeletal pathology ,Scapula ,Infectious arthritis ,Marine Reptile ,medicine ,Pathology ,Fatal disease ,Antarctica ,Pathological - Abstract
Fil: Talevi, Marianella. Universidad Nacional de Río Negro. Instituto de Investigación en Paleobiología y Geología. Río Negro, Argentina. Fil: Rothschild, Bruce.The Carnegie Museum. Pittsburgh, USA. Fil: Reguero, Marcelo. Instituto Antártico Argentino. Buenos Aires, Argentina. Fil: Fernández, Marta S. Museo de La Plata. Division Paleontología de Vertebrados. Buenos Aires, Argentina. Fil: Mitidieri, Matías. Universidad Nacional de Río Negro. Río Negro, Argentina. Fil: Talevi, Marianella. Consejo Nacional de Investigaciones Científicas y Técnicas. Río Negro, Argentina. Fil: Rothschild, Bruce. Indiana University Ball Memorial Hospital. USA. Fil: Fernández, Marta S. Consejo Nacional de Investigaciones Científicas y Técnicas. Río Negro, Argentina. Fil: Reguero, Marcelo. Museo de La Plata. Division Paleontología de Vertebrados. Buenos Aires, Argentina. We describe infectious arthritis and spondyloarthropathy in a juvenile mosasaur recovered from theupper Maastrichtian of Antarctica, representing thefirst report of a skeletal pathology of a mosasaurfrom the southern hemisphere. Macroscopic examination of the scapula revealed a remodelled, deeplyexcavated and expanded gleno-humeral joint with adjacent linear disruption. X-ray examinationrevealed a deep excavation expanding the glenoid fossa, with disorganized subchondral bone and a focalspherical defect. The individual did not continue to grow for a long time after the appearance of thelesion. Although not directly related to the mosasaur death, this condition may have contributed to thedemise of the animal by reducing its effectiveness at obtaining food or increasing susceptibility to fataldisease, additional injury, or even predation. We describe infectious arthritis and spondyloarthropathy in a juvenile mosasaur recovered from theupper Maastrichtian of Antarctica, representing thefirst report of a skeletal pathology of a mosasaurfrom the southern hemisphere. Macroscopic examination of the scapula revealed a remodelled, deeplyexcavated and expanded gleno-humeral joint with adjacent linear disruption. X-ray examinationrevealed a deep excavation expanding the glenoid fossa, with disorganized subchondral bone and a focalspherical defect. The individual did not continue to grow for a long time after the appearance of thelesion. Although not directly related to the mosasaur death, this condition may have contributed to thedemise of the animal by reducing its effectiveness at obtaining food or increasing susceptibility to fataldisease, additional injury, or even predation.
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- 2019
42. Corrigendum: Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon?
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Tamara Zoran, Bettina Sartori, Laura Sappl, Maria Aigner, Ferran Sánchez-Reus, Antonio Rezusta, Anuradha Chowdhary, Saad J. Taj-Aldeen, Maiken C. Arendrup, Salvatore Oliveri, Dimitrios P. Kontoyiannis, Ana Alastruey-Izquierdo, Katrien Lagrou, Giuliana Lo Cascio, Jacques F. Meis, Walter Buzina, Claudio Farina, Miranda Drogari-Apiranthitou, Anna Grancini, Anna M. Tortorano, Birgit Willinger, Axel Hamprecht, Elizabeth Johnson, Lena Klingspor, Valentina Arsic-Arsenijevic, Oliver A. Cornely, Joseph Meletiadis, Wolfgang Prammer, Vivian Tullio, Jörg-Janne Vehreschild, Laura Trovato, Russell E. Lewis, Esther Segal, Peter-Michael Rath, Petr Hamal, Manuel Rodriguez-Iglesias, Emmanuel Roilides, Sevtap Arikan-Akdagli, Arunaloke Chakrabarti, Arnaldo L. Colombo, Mariana S. Fernández, M. Teresa Martin-Gomez, Hamid Badali, Georgios Petrikkos, Nikolai Klimko, Sebastian M. Heimann, Omrum Uzun, Maryam Roudbary, Sonia de la Fuente, Jos Houbraken, Brigitte Risslegger, Raquel Sabino, Cornelia Lass-Flörl, Michaela Lackner, and Bioquímica y Biología Molecular, Microbiología, Medicina Preventiva, Salud Pública
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Microbiology (medical) ,0303 health sciences ,Species complex ,cryptic species ,030306 microbiology ,azoles ,Medizin ,lcsh:QR1-502 ,Azole resistance ,Biology ,biology.organism_classification ,bacterial infections and mycoses ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Cyp51A alterations ,susceptibility profiles ,Aspergillus section Terrei ,Aspergillus terreus ,030212 general & internal medicine ,skin and connective tissue diseases - Abstract
A Corrigendum on Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon?
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- 2019
43. Caloric restriction induces H2O2 formation as a trigger of AMPK-eNOS-NO pathway in obese rats: Role for CAMKII
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Martín Alcalá, Isabel Aranguez, María S. Fernández-Alfonso, Concha F. García-Prieto, Raquel González-Blázquez, Adrián Plaza, Maik Gollasch, Marta Gil-Ortega, Pilar Rodríguez-Rodríguez, Beatriz Somoza, Francisco Javier Manzano-Lista, Marta Viana, Universidad San Pablo-CEU. Departamento de Química y Bioquímica, and Universidad San Pablo-CEU. Grupo de Metabolismo y Función Vascular (MET-VASC)
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0301 basic medicine ,AMPK ,medicine.medical_specialty ,H2O2 ,Caloric restriction ,Biochemistry ,Nitric oxide ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Enos ,Physiology (medical) ,Internal medicine ,Ca2+/calmodulin-dependent protein kinase ,medicine ,Obesity ,Protein kinase A ,biology ,Superoxide ,Endothelial function ,biology.organism_classification ,Adenosine ,030104 developmental biology ,Endocrinology ,chemistry ,Catalase ,biology.protein ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Caloric restriction (CR) improves endothelial function through the upregulation of adenosine monophosphateactivated protein kinase (AMPK) and endothelial nitric oxide synthase (eNOS). Moreover, hydrogen peroxide (H2O2) is upregulated in yeast subjected to CR. Our aim was to assess if mild short-term CR increases vascular H2O2 formation as a link with AMPK and eNOS activation. Twelve-week old Zucker obese (fa/fa) and control Zucker lean male rats were fed a standard chow either ad libitum (AL, n=10) or with a 20% CR (CR, n=10) for two weeks. CR significantly improved relaxation to ACh in fa/fa rats because of an enhanced endogenous production of H2O2 in aortic rings (H2O2 levels fa/faAL=0.5±0.05 nmol/mg vs. H2O2 levels fa/faCR=0.76±0.07 nmol/mg protein; p
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- 2019
44. Microanatomy and histology of the distal limb elements of ophthalmosaurids from the Middle Jurassic to the Lower Cretaceous of the Neuquén Basin, Patagonia, Argentina
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Lisandro Campos, Marianella Talevi, and Marta S. Fernández
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010506 paleontology ,biology ,Articular surfaces ,Cartilage ,Paleontology ,Histology ,Anatomy ,Phalanx ,010502 geochemistry & geophysics ,biology.organism_classification ,01 natural sciences ,Cretaceous ,Tetrapod ,Distal limb ,medicine.anatomical_structure ,Ichthyosaur ,medicine ,0105 earth and related environmental sciences - Abstract
One of the most significant morphological modifications in numerous tetrapod lineages in their secondary adaptation to life in open marine environment is the transformation of the limb into fins. The loss of perichondral bone has been pointed out as the mechanism through which this transformation was achieved. Advanced ichthyosaurs, including ophthalmosaurids, are characterized by the zeugopodium and autopodium not clearly differentiated, and bones dorsoventrally flattened and nodular. In the case of distal limb elements, particularly phalanges, two main arrangements can be recognized in dorsal and ventral views: one is characterized by spaced and quite rounded elements, whereas in the other phalanges tightly packed arrangement is observed, showing almost straight articular surfaces which result in polygonal outlines. Previously only distal limb elements of non-ophthalmosaurids, were described. In this study, we describe and interpret the microstructure of distal limb elements of six specimens of ichthyosaur, five ophthalmosaurids and one non-ophthalmosaurid. Our result shows persistence of abundant cartilage in articular and non-articular surfaces (with exception of the dorsal and ventral surfaces) independently of ontogenetic stage and shape. The coat layer of calcified cartilage is thicker in juvenile than adult specimens and this could be related to the bone remodeling. It is probable that the persistence of significant amount of cartilage in the joint surfaces of the distal limb elements of ichthyosaurs would be linked to more evenly distribute forces through the limb, the increase in the number of articulations and the increase maneuverability during swimming.
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- 2021
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45. Cricosaurus (Thalattosuchia, Metriorhynchidae) survival across the J/K boundary in the High Andes (Mendoza Province, Argentina)
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Marta S. Fernández, Verónica V. Vennari, and Yanina Herrera
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010506 paleontology ,Autapomorphy ,Vaca Muerta Formation ,CROCODYLOMORPHA ,Crocodylomorpha ,010502 geochemistry & geophysics ,01 natural sciences ,Cricosaurus ,purl.org/becyt/ford/1 [https] ,purl.org/becyt/ford/1.5 [https] ,Paleontology ,VACA MUERTA FORMATION ,LOWER CRETACEOUS ,Metriorhynchidae ,Ammonoidea ,Neuquén Basin ,Lower Cretaceous ,Ciencias Naturales ,AMMONOIDEA ,0105 earth and related environmental sciences ,biology ,NEUQUÉN BASIN ,Thalattosuchia ,biology.organism_classification ,Cretaceous ,Taxon ,Geology - Abstract
Metriorhynchidae is an extinct group of Jurassic–Cretaceous crocodylomorphs that developed a fully pelagic lifestyle. Its Jurassic record is outstanding (it includes around 40 nominal species), while the records that can be restricted to the Cretaceous are particularly sparse. Here we describe a partial skull of a new species of Cricosaurus, Cricosaurus puelchorum sp. nov., from the lower Berriasian of the Vaca Muerta Formation (Neuquen Basin, Argentina). The description of the specimen reveals a series of autapomorphies and a unique combination of characters that justify the creation of a new species. Phylogenetic analysis places Cricosaurus puelchorum sp. nov. closer to three upper Kimmeridgian–lower Tithonian species of southern Germany. The new taxon was recovered in connection with an accurate ammonoid-based biostratigraphic control and allows confirming the survival of Cricosaurus across the J/K boundary at the southeastern Pacific., Facultad de Ciencias Naturales y Museo
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- 2021
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46. SPARC overexpression combined with radiation retards angiogenesis by suppressing VEGF-A via miR-410 in human neuroblastoma cells
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Jerusha Boyineni, Manu Gnanamony, Christopher S. Gondi, David M. Pinson, Julian Lin, Reuben Antony, Smita Tanpure, and Karen S. Fernández
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Vascular Endothelial Growth Factor A ,0301 basic medicine ,Cancer Research ,Angiogenesis ,Cell ,Angiogenesis Inhibitors ,Biology ,Neovascularization ,angiogenesis ,Mice ,Neuroblastoma ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,CAM chorioallantoic-membrane ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Osteonectin ,radiation miR-410 ,vascular endothelial growth factor ,Neovascularization, Pathologic ,Radiotherapy ,Oncogene ,SPARC ,Articles ,Genetic Therapy ,Cell cycle ,medicine.disease ,Xenograft Model Antitumor Assays ,Molecular biology ,Gene Expression Regulation, Neoplastic ,Vascular endothelial growth factor ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,chemistry ,Cell culture ,030220 oncology & carcinogenesis ,Cancer research ,medicine.symptom ,Neoplasm Transplantation - Abstract
Neuroblastoma (NB) is the most common extra-cranial solid tumor in children and despite aggressive therapy survival rates remain low. One of the contributing factors for low survival rates is aggressive tumor angiogenesis, which is known to increase due to radiation, one of the standard therapies for neuroblastoma. Therefore, targeting tumor angiogenesis can be a viable add-on therapy for the treatment of neuroblastomas. In the present study, we demonstrate that overexpression of secreted protein acidic and rich in cysteine (SPARC) suppresses radiation induced angiogenesis in SK-N‑BE(2) and NB1691 neuroblastoma cells. We observed that overexpression of SPARC in SK-N-BE(2) and NB1691 cells reduced radiation induced angiogenesis in an in vivo mouse dorsal skin model and an ex vivo chicken CAM (chorioallantoic-membrane) model and also reduced tumor size in subcutaneous mouse tumor models of NB. We also observed that SPARC overexpression reduces VEGF-A expression, in SK-N-BE(2) and NB1691 NB cells via miR-410, a VEGF-A targeting microRNA. SPARC overexpression alone or in combination with miR-410 and radiation was shown to be effective at reducing angiogenesis. Moreover, addition of miR-410 inhibitors reversed SPARC mediated inhibition of VEGF-A in NB1691 cells but not in SK-N-BE(2) NB cells. In conclusion, the present study demonstrates that the overexpression of SPARC in combination with radiation reduced tumor angiogenesis by downregulating VEGF-A via miR-410.
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- 2016
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47. Hand1 overexpression inhibits medulloblastoma metastasis
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Maheedhara R. Guda, Sarah E. Martin, Julian J. Lin, Andrew J. Tsung, Kiran Kumar Velpula, Reuben Antony, Swapna Asuthkar, and Karen S. Fernández
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0301 basic medicine ,Homeobox protein NANOG ,Epithelial-Mesenchymal Transition ,Angiogenesis ,Biophysics ,Biology ,Biochemistry ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,SOX2 ,Basic Helix-Loop-Helix Transcription Factors ,Tumor Cells, Cultured ,medicine ,Humans ,Neoplasm Invasiveness ,Induced pluripotent stem cell ,Wnt Signaling Pathway ,Molecular Biology ,beta Catenin ,Medulloblastoma ,Large cell ,Cell Biology ,medicine.disease ,Up-Regulation ,Urokinase receptor ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research - Abstract
Medulloblastoma (MB) is the most frequent malignant pediatric brain tumor. Current treatment includes surgery, radiation and chemotherapy. However, ongoing treatment in patients is further classified according to the presence or absence of metastasis. Since metastatic medulloblastoma are refractory to current treatments, there is need to identify novel biomarkers that could be used to reduce metastatic potential, and more importantly be targeted therapeutically. Previously, we showed that ionizing radiation-induced uPAR overexpression is associated with increased accumulation of β-catenin in the nucleus. We further demonstrated that uPAR protein act as cytoplasmic sequestration factor for a novel basic helix-loop-helix transcription factor, Hand1. Among the histological subtypes classical and desmoplastic subtypes account for the majority while large cell/anaplastic variant is most commonly associated with metastatic disease. In this present study using immunohistochemical approach and patient data mining for the first time, we demonstrated that Hand1 expression is observed to be downregulated in all the subtypes of medulloblastoma. Previously we showed that Hand1 overexpression regulated medulloblastoma angiogenesis and here we investigated the role of Hand1 in the context of Epithelial-Mesenchymal Transition (EMT). Moreover, UW228 and D283 cells overexpressing Hand1 demonstrated decreased-expression of mesenchymal markers (N-cadherin, β-catenin and SOX2); metastatic marker (SMA); and increased expression of epithelial marker (E-cadherin). Strikingly, human pluripotent stem cell antibody array showed that Hand1 overexpression resulted in substantial decrease in pluripotency markers (Nanog, Oct3/4, Otx2, Flk1) suggesting that Hand1 expression may be essential to attenuate the EMT and our findings underscore a novel role for Hand1 in medulloblastoma metastasis.
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- 2016
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48. Protein expression profiling in haemocytes and plasma of the Manila clam Ruditapes philippinarum in response to infection with Perkinsus olseni
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Antonio Villalba, Asunción Cao, and S Fernández-Boo
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0301 basic medicine ,Hemocytes ,animal structures ,Proteome ,Zoospore ,Veterinary (miscellaneous) ,Ruditapes ,Aquatic Science ,Microbiology ,Plasma ,03 medical and health sciences ,chemistry.chemical_compound ,Immune system ,Animals ,Parasite hosting ,biology ,Bivalvia ,biology.organism_classification ,Blood proteins ,030104 developmental biology ,chemistry ,Alveolata ,Spain ,Immunology ,Lysozyme - Abstract
The protein expression profiling in clam haemocytes and plasma in response to Perkinsus olseni was addressed. Adult Manila clams from a P. olseni-free bed were experimentally challenged with parasite zoospores to analyse immune response. In another experiment, the effects of longer term infection were assessed in adult clams collected from a P. olseni-affected bed, by comparing moderate to very heavily infected clams with non-infected ones. Haemocyte and plasma proteins were separated by two-dimensional electrophoresis; spot patterns were qualitatively compared between treatments within each experiment and the spots indicating differential protein expression associated with P. olseni challenge or with field infection were processed for protein identification. Fifteen clam proteins (four in haemocytes and eleven in plasma) of which expression was markedly affected by P. olseni were identified. Some of the identified proteins have a well-known role in clam immune response against the parasite, such as lysozyme and lectins. Rho GTPase-activating protein 6 could be a marker of resistance against P. olseni, which should be further studied.
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- 2016
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49. Ribosome-dependent activation of stringent control
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Alan Brown, Israel S. Fernández, Venki Ramakrishnan, and Yuliya Gordiyenko
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Models, Molecular ,0301 basic medicine ,Adenosine ,Protein Conformation ,Stringent response ,Guanosine Tetraphosphate ,GTPase ,RNA, Transfer, Amino Acyl ,Biology ,Second Messenger Systems ,Ribosome ,Article ,GTP Pyrophosphokinase ,03 medical and health sciences ,RNA, Transfer ,Stress, Physiological ,Escherichia coli ,Protein biosynthesis ,Amino Acids ,Phosphorylation ,Binding Sites ,Multidisciplinary ,030102 biochemistry & molecular biology ,Escherichia coli Proteins ,Cryoelectron Microscopy ,RNA ,Gene Expression Regulation, Bacterial ,Protein Structure, Tertiary ,A-site ,030104 developmental biology ,Biochemistry ,Protein Biosynthesis ,Transfer RNA ,Ribosomes ,Metabolic Networks and Pathways - Abstract
In order to survive, bacteria continually sense, and respond to, environmental fluctuations. Stringent control represents a key bacterial stress response to nutrient starvation that leads to rapid and comprehensive reprogramming of metabolic and transcriptional patterns. In general, transcription of genes for growth and proliferation is downregulated, while those important for survival and virulence are upregulated. Amino acid starvation is sensed by depletion of the aminoacylated tRNA pools, and this results in accumulation of ribosomes stalled with non-aminoacylated (uncharged) tRNA in the ribosomal A site. RelA is recruited to stalled ribosomes and activated to synthesize a hyperphosphorylated guanosine analogue, (p)ppGpp, which acts as a pleiotropic secondary messenger. However, structural information about how RelA recognizes stalled ribosomes and discriminates against aminoacylated tRNAs is missing. Here we present the cryo-electron microscopy structure of RelA bound to the bacterial ribosome stalled with uncharged tRNA. The structure reveals that RelA utilizes a distinct binding site compared to the translational factors, with a multi-domain architecture that wraps around a highly distorted A-site tRNA. The TGS (ThrRS, GTPase and SpoT) domain of RelA binds the CCA tail to orient the free 3' hydroxyl group of the terminal adenosine towards a β-strand, such that an aminoacylated tRNA at this position would be sterically precluded. The structure supports a model in which association of RelA with the ribosome suppresses auto-inhibition to activate synthesis of (p)ppGpp and initiate the stringent response. Since stringent control is responsible for the survival of pathogenic bacteria under stress conditions, and contributes to chronic infections and antibiotic tolerance, RelA represents a good target for the development of novel antibacterial therapeutics.
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- 2016
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50. Bacterial diversity in the rhizosphere of a transgenic versus a conventional maize (Zea mays)
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MA Cruz-Hernández, L Vital-López, S Fernández-Dávila, and A Mendoza-Herrera
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Rhizosphere ,education.field_of_study ,Genetically modified maize ,Physiology ,Transgene ,fungi ,Population ,food and beverages ,Plant Science ,Genetically modified crops ,Biology ,Ribosomal RNA ,Biochemistry ,chemistry.chemical_compound ,Horticulture ,Glufosinate ,chemistry ,Cultivar ,education - Abstract
Genetically modified crops could cause negative effectson bacterial communities. In this study, we compared the bacterialcommunity structure of two maize cultivars to determine whetherthe transgenic cultivar exerts a negative effect on bacterial communitiesinhabiting the rhizosphere. Cultivars included the geneticallymodified maize (Zea mays), with the pat-gene conferring resistanceto the herbicide glufosinate (synonym: L-phosphinothricin), andthe hybrid, conventional maize. Metagenomic DNA was extractedfrom the rhizosphere of plants grown in a greenhouse. Single-strandconformation polymorphism, based on polymerase chain reactionamplifying a partial subunit rRNA gene was used to characterizeand generate genetic profiles that corresponded to the bacterial communitiesof the amplified products from the rhizosphere of the twomaize cultivars. Genetic profiles of the rhizospheres consisted ofdistinguishable profiles, based on the chosen primer pairs. Similarityanalyses of patterns found by binary matrix analyses showed nodifferences in the bacterial communities of the two cultivars. Thisanalysis showed that the microbial population’s structures of the conventionaland genetically modified maize were very homogeneous.Genetic modification did not adversely affect the structural bacterialcommunity in the rhizosphere of the transgenic maize cultivar.
- Published
- 2016
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