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This study analysed and compared the shell shape, morphometrics and relative growth of four sympatric limpet species (Patella depressa,Patella ulyssiponensis,Patella vulgataandSiphonaria pectinata) collected at Praia da Luz in Lagos (Algarve coast – southern Portugal). Morphometric relationships were established through regression analysis between linear (shell length, width and height), ponderal (total weight), area (shell base and surface areas) and volume variables (shell internal and total volumes). Relative growth (isometryvsallometry) was analysed to assess variation in the growth rate of morphometric variables throughout the species ontogeny. In addition, morphometric indices (ellipticity, conicity, density, surface area and volumetry) were calculated to further characterize shell shape. Overall, 1482 individuals with broad size and weight ranges were analysed (P. depressa= 354;P. ulyssiponensis= 306;P. vulgata= 408;S. pectinata= 414). All regressions were highly significant (P< 0.001) and the morphometric variables were strongly correlated (r= 0.761 to 0.994). Among 28 morphometric relationships, there were 14 isometries, 13 positive allometries and only one negative allometry. The morphometric indices revealed clear morphological differences between species and were mostly size-dependent, reflecting gradual changes in shell shape during growth. The main results are compared with a compilation of analogous data reported for these limpet species throughout their distributional range. Overall, the general trends in relative growth are discussed in terms of the species life habits, main traits and functional morphology.

The present study described the gametogenesis and assessed the pattern of energy storage throughout the reproductive cycle of the golden carpet shell (Polititapes aureus) from the Ria Formosa lagoon (southern Portugal). Monthly sampling was performed for two years (March 2016–February 2018) and the study was based on gonad histology, complemented by the estimation of the mean gonadal index, body condition index and biochemical composition. The species’ reproductive cycle presented a seasonal pattern, with a resting period mainly between October and January and gametogenesis beginning around February– March. The spawning season of P. aureus was shorter in 2016 (June–September) than in 2017 (May–October). Furthermore, ripe individuals were very scarce (1.3%) in 2017 compared with the previous year (11.4%). Mean gonadal index (GI) reflected the species’ reproductive cycle and the body condition index (CI) and biochemical composition of the individuals exhibited high variation between years. Regarding the biochemical composition, proteins ranged between 190.6 and 595.2 μg mg−1 , glycogen from 5.7 to 102.6 μg mg−1 and total lipids between 31.6 and 80.7 μg mg−1 . The reproduction of P. aureus was strongly influenced by fluctuations in both seawater temperature and chlorophyll a, as reflected through the temporal variation in the gonadal cycle, condition index and biochemical composition. Overall, the information gathered in this study is valuable to propose scientifically based harvesting management measures for the long-term sustainable exploitation of this shellfish resource, further reinforcing the importance of implementing adaptive fishery management strategies to cope with global climate change. projects‘Contributo para a Gestão Sustentada da Pequena Pesca e da Apanha (PESCAPANHA)’, ‘Gestão das Zonas de Produção de Moluscos Bivalves da Região Algarvia – Sistema Nacional Monitorização de Moluscos Bivalves (SNMB-SUL II)’ and ‘Inovação e Valorização da Aquacultura de Invertebrados Marinhos (AIM)’, funded by the Operational Programme (MAR 2020) and co-financed by the European Maritime and Fisheries Fund (EMFF 2014–2020). info:eu-repo/semantics/publishedVersion

This study aimed to characterize the catches, quantify fishing yield, bycatch and discards, and also estimate damage and mortality rates using hand dredges with two different mesh sizes (20 and 25 mm) for harvesting the wedge clam (Donax trunculus). A total of 160 tows were performed in Lota Beach and Armona Island in the Algarve coast (southern Portugal). Overall, were caught 12,319 individuals (3985 in Lota Beach and 8334 in Armona Island) belonging to 48 taxa distributed among seven phyla (14 taxa in Lota Beach and 44 taxa in Armona Island). Bycatch proportions ranged from 13.1% to 32.0% in abundance and from 10.7% to 32.9% in biomass, with more bycatch using hand dredges with 20 mm mesh size. Commercially undersized D. trunculus (MCRS = 25 mm SL) prevailed within the bycatch, representing over 40% of discards using both mesh sizes. Due to different size selectivity, the target catch (CPUE) and bycatch per unit effort (BCPUE) in abundance and biomass, as well as fishing yield as a function of tow duration and towed area, were lower for hand dredges with 25 mm mesh than with 20 mm mesh. In general, damage and mortality rates were fairly low (1.3-2.6%) independently of mesh size, reinforcing the importance of releasing live bycatch to the sea immediately after sorting the catches. Overall, this study prompted the need to develop a good practice guide for hand dredgers, aiming to mitigate avoidable indirect discards mortality and improve the sustainability of this traditional harvesting activity. info:eu-repo/semantics/publishedVersion

The common cockle Cerastoderma edule is a widespread bivalve species inhabiting estuarine systems across the North East Atlantic, where it provides several ecosystem services, and represents a valuable fishery resource for local economies. However, anthropogenic pressure and more frequent extreme weather events threaten the resilience of the species. Spatially explicit information on species distribution is critical for the implementation of management and conservation practices. This study assessed the potential distribution of C. edule in the Ria de Aveiro by estimating the habitat suitability using an ensemble approach based on ecological niche modeling and recently developed hydrodynamic and water quality models to forecast both average and projected estuarine conditions. The models were developed for the summer of 2013 and spring of 2019 and potential range shifts in the species distribution were forecasted under projected environmental conditions: high and low estimates of freshwater discharge, a 2 degrees C increase in water temperature, and the combined effect of low freshwater discharge and increased water temperature. The results suggest that salinity, time of submersion, and current velocity play an important role in the distribution of cockles, and large areas were consistently classified with high habitat suitability. Increased freshwater discharge (both seasons) and low discharge coupled to increased temperature (spring) resulted in large decreases in suitable habitat. Conversely, low freshwater discharges and average (unchanged) temperatures increased the suitable habitat in the outermost regions of the Ria. The spatially explicit information provided contributes to a better understanding of the vulnerability of C. edule in the Ria de Aveiro to extreme weather events (e.g., droughts, river floods) and may support adaptive management strategies of the cockle fishery during these conditions. Moreover, this approach can be transferred to other estuarine ecosystems for which data describing the environmental conditions (e.g., derived from numerical models), and information about species presence are available (including data-poor species). LA/P/0094/2020 POCI-01-0145-FEDER-028425 info:eu-repo/semantics/publishedVersion

Understanding how long water is retained in an estuary and how quickly it is completely flushed is essential to estimate an estuary's health in areas with significant pollutant loadings. The present study analyses the effect of five different Tagus River discharge scenarios ranging from low to extreme on residence time (RT), exposure time (ET) and integrated water fractions inside pre-established Tagus estuary areas, to identify its most vulnerable areas to pollution. The 3D version of the MOHID hydrodynamic model coupled to a lagrangian tool was used. The increase of the river discharge generated high current velocities which, in turn, led to an increased rate of tracers leaving the estuary. As a consequence, RT and ET decreased from 59 to 3.5 days under a low and extreme river discharge scenario, respectively. Under a low river discharge, significant differences were observed between RT and ET in the areas located in the main body of the estuary and in the bays. As river discharge increased, RT and ET decreased in all areas of the estuary and those differences faded, with the greatest differences observed in the areas situated along the south margin. In general, results showed that with high river discharges the tracers released in the upper estuary are spread throughout the estuary, but mainly in downstream areas. However, when the river discharge reached exceptionally high values, local eddies were formed, leading to the retention of the tracers in the estuary's south margin and inner bays. The results in this study allowed to identify the most vulnerable areas within the estuary as a function of the river discharge. info:eu-repo/semantics/publishedVersion

Rivers are responsible for the main transport of nutrients from land to estuaries and coastal areas. Understanding the fate of these anthropogenic inputs and their impacts on estuaries and adjacent marine ecosystems is essential for the protection of coastal waters. Here, the 3D MOHID hydrodynamic model coupled with a biogeochemical model was used to determine seasonal nutrient fluxes between areas of the Tagus estuary. For this purpose, the estuary was divided into boxes, which allowed to evaluate nutrients (and phytoplankton) exchanges between areas, to identify source and sink zones, to estimate the amount of nutrients exported to the coastal zone adjacent to the estuary, and to understand the recycling capacity of this estuarine system. Globally, for all nutrients and seasons, the highest net fluxes were observed in the main and central body of the estuary. The differences observed in the flux budget for each box and for all nutrients are mostly related to variations in the seasonal abundance of phytoplankton, which is much higher in Spring/Summer than in the rest of the year due to the higher seawater temperature and irradiance. During these seasons the high temperatures also promoted the fast mineralization of organic matter along the water column and in the sediment. For all seasons, an export of nutrients and phytoplankton from upstream to downstream was observer at the surface, and from the most confined areas of the southern margin into the central body and main channel of the estuary, whilst the opposite was observed in the bottom layers. Nevertheless, surface fluxes were always higher than those recorded at depth, indicating that the estuary exported nutrients to the coast, all year round. For 2020 it was estimated that 52%, 88% and 65% of the ammonium, nitrate, and phosphate, respectively, that entered the estuary from both rivers and wastewater treatment plants were exported to the adjacent coast. The amount of nutrients exported to the coastal area is closely related to river discharge, being much higher in flood years than in dry years, particularly for nitrate. info:eu-repo/semantics/publishedVersion

This study describes Apseudopsis formosus sp. nov., a new apseudomorph tanaidacean species from the Ria Formosa lagoon (southern Portugal). Species description was based on 223 individuals (22 juveniles, 60 males and 141 females), comprising diverse developmental stages (juveniles II, males I and II, preparatory, copulatory and intermediate females). The total length of the studied population ranged from 2.2 to 3.0 mm in juveniles, 2.5 to 4.8 mm in males and 2.9 to 4.9 mm in females. Overall, Apseudopsis formosus sp. nov. differs from congeneric tanaidaceans from the Atlantic Ocean and Mediterranean Sea by the presence of combined different morphological characters such as short pointed rostrum, posterolateral pointed corners on pereonites 2-6, hyposphenium only on pereonite 6, antennular outer flagellum 7- to 10-segmented, inner flagellum 3-segmented and five spines on propodus of pereopod 1, and sexual dimorphism evidenced by a pronounced mid-dorsal triangular wing-shaped protuberance on male merus cheliped, unique in Apseudopsis genus. At each studied developmental stage, some individuals presented abnormalities in spination, having only four spines in one of the propodus of pereopod 1. Additionally, five first records of Apseudopsis from the Algarve coast (A. adami, A. bacescui, A. elisae, A. mediterraneus and A. uncidigitatus) are reported for Portuguese waters. A biogeographic overview of the genus Apseudopsis is presented through the compilation and mapping of all worldwide reported occurrences. Passive dispersion can explain the most recent species distribution, yet not disregarding that the study area is taxonomically understudied. This study contributes to improve the current knowledge on tanaidacean taxonomy and updates the geographical distribution range of the Apseudopsis-complex. Portuguese Fisheries Operational Programme (Mar2020) [MAR-02-01-02-FEAMP-0061] European Maritime and Fisheries Fund (EMFF 2014-2020) Fundacao para a Ciencia e a Tecnologia (FCT)Portuguese Foundation for Science and Technology [SFRH/BPD/94985/2013] Centro de Estudos do Ambiente e do Mar (CESAM) [UID/AMB/50017] FCT/MEC FEDER, within the PT2020 Partnership Agreement FEDER, within Compete 2020European Union (EU)

The present study reports a detailed description of the catches of cuttlefish (Sepia officinalis) in the trap fishery performed seasonally off the Algarve coast (southern Portugal). A total of 86 fishing surveys were performed during the fishing season (May-September) from 2009 to 2014, on sandy bottoms at bathymetrics ranging from 8 to 10 m depth. During the whole study period, fishing operations involved 6311 cuttlefish traps with a gear catch rate of 37% (frequency of traps with cuttlefish) and a mean of 0.9 S. officinalis caught per trap. A total of 5883 S. officinalis (1424.0 kg) were caught, being only recorded 282 dead individuals (mortality rate of 4.6%). The mean fishing yield (standardised CPUE's in number and weight) was 46.6 individuals and 11.3 kg 50 traps(-1). Overall, males (n = 3188) outnumbered females (n = 2695), producing a significant male-biased (1 M: 0.85 F) sex ratio. On average, females were significantly larger and heavier (124.4 +/- 22.9 mm ML; 253.1 +/- 148.8 g TW) than males (121.9 +/- 24.0 mm ML; 230.7 +/- 143.1 g TW). Accordingly, the length-frequency distributions displayed significant gender differences, with 89.6% of females and 85.8% of males accomplishing the MCRS (100 mm ML). This markedly seasonal, highly sustainable and low impacting small-scale fishery constitutes a locally important socio-economic activity during spring and summer. Undamaged catches and highly fresh individuals further contribute to the considerable price reached by S. officinalis caught using this artisanal fishing gear. Agência financiadora European Union (EU) Fisheries Operational Programme (MAR 2020) European Maritime and Fisheries Fund (EMFF 2014-2020) info:eu-repo/semantics/publishedVersion

Ocean acidification (OA) will decrease shellfish growth and survival, with ecological and economic consequences for fisheries and aquaculture. However, the high variability of results among experiments, and the lack of long-term studies, make it difficult to predict the effect that OA will have on bivalve species. We tested the long-term effect of high CO2 on growth, calcification rates, and survival of juveniles of the commercial bivalve species Chamelea gallina from Southern Portugal. The local high alkalinity of seawater probably buffered the negative effect of the pH drop, and after 75 days juveniles increased their growth and calcification rates with CO2. However, after 217 days, the situation reversed, bivalves under control conditions had the highest growth and calcification rates, while individuals under high CO2 presented negative calcification rates. The biometric variable that responded first was the width of the individuals, followed by the height and length of the shells. Survival was unaffected except for a mortality peak of juveniles under control and intermediate conditions as a consequence of a temperature drop. In the short term, C. gallina will increase their calcification rates to compensate for OA. However, in the long term, the additional energy expended will be translated into growth losses with negative repercussions for the fisheries and aquaculture. The cultivation of shellfish on high alkaline seawater should be further explored as a bioremediation measure to mitigate the negative effect of OA on shellfish aquaculture.

This study reports the reproductive cycle, condition index, size at first maturity, growth and the morphometric relationships of the common cockle Cerastoderma edule in Ria de Aveiro (NW Portugal), fundamental knowledge in fisheries management planning and ecosystem conservation. The reproductive cycle was monitored for a period of two years, from January 2013 to December 2014. Spawning extended from June to October, with a peak in the summer months (July to September). The condition index showed a seasonal pattern which appear related to food availability and gametogenic cycle. Sexual maturity was attained at a shell length of 18.6 mm during the first year of life, which stands below the minimum landing size currently in force (25 mm). The von Bertalanffy growth equation was based on size-at-age data obtained from the microscopic analysis of growth rings in sectioned shells: Lt = 40.7[1-e −0.74(t-0.30)]. The morphometric relationships between shell dimensions (length, height and width) were studied in order to understand the effects of ontogenetic changes in cockles` shell morphology, an information that is useful to improve the selectivity of the fishing gears and the size-sorting devices. Some management strategies for the Ria de Aveiro cockle fishery were proposed.

Understanding the diversity and community composition of marine communities in coastal areas is of utmost importance to understand how overlapping anthropogenic pressures impact the marine environment. The demersal and epibenthic communities of the Portuguese northern continental shelf were surveyed using a bottom trawl to understand their taxonomic composition, abundance, spatial distribution, and their relationship with environmental variables such as sediment, organic matter, depth and latitude. Bottom sediments were homogenous, being mainly composed by sand particles. The diversity of the study area was low, but high abundance of important commercial species, as Trisopterus luscus, Trachurus trachurus, Palaemon serratus and Merluccius merluccius, in the juvenile stage of life, points out the importance of the area as nursery grounds. Four assemblages were identified, with a visible geographical pattern. Results obtained supply background information that may contribute to the development of future management and monitoring plans for this important and sensible coastal area. Project PRESPO 2008-1/038; PD/BD/135065/2017 info:eu-repo/semantics/publishedVersion

Coastal bivalve populations are characterized by large temporal fluctuations, driven by recruitment success dependent on environmental conditions. The present study evaluated the relationship of rainfall, chlorophyll-α, sea surface temperature (SST) and wind, with the biomass of four commercial bivalve species (Spisula solida, Donax trunculus, Chamelea gallina and Ensis siliqua) that occur both along the Barlavento (western region), and the Sotavento (eastern region), along the South coast of Portugal, between 1999 and 2011. Multiple regression models were used to test two hypotheses: a) the association between environmental conditions three months prior to the spawning period and the biomass in the following year (response variable) and b) the association between environmental conditions during the spawning season plus one month and the biomass in the following year. Wind was not included in the model to test a). The environmental variables considered were not important for E. siliqua. In the period prior to spawning, temperature was significant for S. solida (both study areas), rain for D. trunculus and C. gallina (western area) and chlorophyll-α for C. gallina (western area). All the correlations were positive. During the spawning period, rain was significant for all three species but with different trends. The correlation with rain in months early in the spawning season was positive for S. solida (both areas) and D. trunculus (western area). The correlation with the rain in months towards the end of the spawning period was negative for D. trunculus, and C. gallina (western area). Chlorophyll-α in months at later stages of spawning was significant and positive for D. trunculus (both areas) and C. gallina (western area). The wind, expressed as an index developed to indicate the overall occurrence of winds blowing parallel to the coast (assumes to favour the retention of larvae in appropriate environments), was negatively correlated with biomass for mid to late spawning season for S. solida (eastern area) and D. trunculus (western area). For C. gallina there was a positive correlation with wind early in the spawning season. The SST was not an important variable during the spawning period with the exception of D. trunculus where the temperature at mid spawning season was significant with a negative correlation in the western coast and positive in the eastern coast. This study highlighted the annual spatial distribution of four commercially important bivalves and how environmental factors are likely to play an important role on both biomass and location of the fishing beds. Monitoring of the environmental variables could provide information to predict biomasses of bivalve species, an important tool for its management, as well as predict trends and plan strategies in response to global environmental changes. info:eu-repo/semantics/publishedVersion

The epifauna associated to farmed mussels in southern Portugal coast was analysed, aiming at identifying the species with spreading potential through commercial transport. The presence of a relevant number of the species here found is not reported to at least one of the common mussel export/transposition countries. Indeed, important species biogeographic dissimilarities between the mussel farm area and the Greater North Sea and Western Mediterranean Sea sub-regions were detected, suggesting the potential transport of non-indigenous species (NIS) into other countries. Among them, fouling species such as the anemones Paractinia striata and Urticina felina, the acorn barnacles Balanus glandula and Balanus trigonus or the bryozoans Bugulina stolonifera and Schizoporella errata exhibit functional attributes that allow them to colonise and spread in new areas. This combined biogeographic and functional approach may contribute to clarify the role of aquaculture on the transport of NIS and to predict and prevent their spreading worldwide. info:eu-repo/semantics/publishedVersion

This study analysed the shell morphology, morphometric relationships and relative growth in three topshell species (Phorcus lineatus, Phorcus sauciatus and Steromphala umbilicalis) collected in the Algarve coast (southern Portugal). A total of 1382 individuals were sampled (465 P. lineatus, 447 P. sauciatus and 470 S. umbilicalis) and all species comprised individuals with broad size and weight ranges. Morphometric relationships were established between linear (shell height, width, spire height, aperture height, aperture width) and ponderal (total weight) variables, whose relative growth (isometry vs. allometry) was analysed to assess variation throughout the species ontogeny. All morphometric relationships were highly significant (P < 0.001) and displayed invariably high correlation coefficients (r = 0.828 to 0.977), presenting mostly negative allometries (77.8%), distantly followed by positive allometries (16.7%) and by isometric growth (5.5%). In addition, four morphometric indices (sphericity, conicity, aperture roundness and density) were calculated to further describe and discern variation in shell shape in these topshell species. Moreover, this study provides a useful compilation and comparison of morphometric relationships, indices and relative growth features, thus improving the knowledge currently available on these subjects for P. lineatus, P. sauciatus and S. umbilicalis. IPMA-2019-042-BI info:eu-repo/semantics/publishedVersion

We used a new, easy to use, highly selective, low impact and cheap method of sampling in the swash zone of a sandy beach to obtain catch per unit effort data (CPUE) for Pennant's swimming crab, Portumnus latipes (Pennant, 1777). Metal stakes baited with sardines were used to attract the crabs that were caught by hand. Crab density was estimated based on area of attraction and maximum CPUE and compared with estimates from bivalve dredges used at depths from 3 to 6.5 m. The baited stake method gave an estimate of 0.026 crabs m(-2), which is comparable to bivalve dredge estimates (0.0059-0.045 crabs m(-2)). This approach can be used for crustaceans, gastropods and other mobile benthic organisms. FCT-Foundation for Science and TechnologyPortuguese Foundation for Science and Technology [CCMAR/Multi/04326/2013] info:eu-repo/semantics/publishedVersion

Populations of marine bivalves are subject to large interannual fluctuations as a result of their sensitivity to unfavourable environmental conditions. These populations have a strong dependence on recruitment, which constitutes a risk to stock conservation and the sustainability of the commercially exploited species. Bivalve sanctuaries comprising no‐take areas can promote the restocking of large coastal areas as a result of the high fecundity and the potentially long‐distance larval dispersal of bivalves. The present study explores a novel spatio‐temporal approach to investigate suitable locations for bivalve sanctuaries, aimed at protecting and enhancing stocks along the Algarve coast in southern Portugal. In the context of small‐scale fisheries, bivalve dredging constitutes an important socio‐economic activity. Three bivalve species are targeted: the striped venus (Chamelea gallina), the donax clam (Donax trunculus), and the surf clam (Spisula solida). Data gathered from 36 bivalve fishing surveys conducted over three decades (1986–2015) were analysed using geostatistical methods, accounting for temporal and spatial autocorrelation to produce continuous prediction maps of species distribution for each survey. The approach taken permitted the use of all scattered historical data collected by different methods. The predictions were then used to summarize and illustrate the spatial distribution of species across time, in terms of average biomass, variability, and maximum potential biomass, and to delimit the areas as a function of the species persistence (recurrent, occasional, or rare). The temporal patterns through space were further investigated using empirical orthogonal function (EOF) analysis. The areas accounting for 80% of the species biomass were also estimated. Results of this set of analyses led to the proposal of locations for establishing bivalve sanctuaries, aimed at enhancing the stocks of commercial bivalve species in the long term. Such an innovative spatio‐temporal approach and management strategy is replicable in other fishing resources and geographic areas.

This study examined temporal distributions of macrobenthic communities in relation to bottom depth and specifically addressed whether variation in sedimentary dynamics affects species composition and functional structure. Sampling was carried in 2014 (February, May and September) off Tavira Island (southern Portugal). In each sampling period, three replicates of sediment samples were collected at 7, 12, 17 and 22 m deep for both macrobenthic and sediment characterisation. Distributional patterns of macrofauna communities were a function of the interaction between depth and temporal variability, influenced by a gradient in hydrodynamics and species recruitment. The duration of sediment remobilisation and the organic matter content in sediments were the main features of the shoreface sedimentary dynamics responsible for differences in macrobenthic species composition and feeding habits. At low depths (7 m), under intense hydrodynamic conditions and longer period of sediment remobilisation, sediments were characterised by slightly gravelly sand with low contents of organic matter and calcium carbonate. Macrobenthic communities inhabiting shallow depths displayed low abundance and species richness, being dominated by grazers and suspension feeders. In contrast, at the highest studied depth (22 m), subject to low sediment remobilisation, sediments were composed by gravelly sand with high contents of organic matter and calcium carbonate. This depth (22 m) was characterised by high abundances and species richness, reflecting a more stable macrobenthic community composed mainly by surface deposit feeders. According to the benthic communities, the seaward limit of significant wave effects on the seabed is around 7 m in low-energy periods and over 17 m in high hydrodynamic energy periods.

The present study reports the weight-length (W-L) relationships and assesses the relative growth of the common cuttlefish (Sepia officinalis) from the Algarve coast (southern Portugal). Overall, were sampled and analysed 5883 individuals with broad ranges in both mantle length and total weight, with females being significantly larger and heavier than males. In males, females and sexes combined, the W-L relationships were highly significant and the morphometric parameters were highly correlated. Regarding relative growth, males, females and sexes combined displayed negative allometries, reflecting a slower growth rate in total weight than in mantle length during the species ontogeny, being the hypoallometric growth less intense in females than in males. An extensive compilation of analogous data reported throughout the distributional range of S. officinalis (Atlantic Ocean and Mediterranean Sea) further confirmed that negative allometries (weaker in females than in males) between specimen size and total weight are a typical feature in this species. The main factors responsible for this hypoallometric growth are analysed and their implications are discussed in terms of the species functional morphology and behavioural ecology.

In the current work we propose a new method to sample surface sediment during bivalve fishing surveys. Fishing institutes all around the word carry out regular surveys with the aim of monitoring the stocks of commercial species. These surveys comprise often more than one hundred of sampling stations and cover large geographical areas. Although superficial sediment grain sizes are among the main drivers of benthic communities and provide crucial information for studies on coastal dynamics, overall there is a strong lack of this type of data, possibly, because traditional surface sediment sampling methods use grabs, that require considerable time and effort to be carried out on regular basis or on large areas. In face of these aspects, we developed an easy and un-expensive method to sample superficial sediments, during bivalve fisheries monitoring surveys, without increasing survey time or human resources. The method was successfully evaluated and validated during a typical bivalve survey carried out on the Northwest coast of Portugal, confirming that it had any interference with the survey objectives. Furthermore, the method was validated by collecting samples using a traditional Van Veen grabs (traditional method), which showed a similar grain size composition to the ones collected by the new method, on the same localities. We recommend that the procedure is implemented on regular bivalve fishing surveys, together with an image analysis system to analyse the collected samples. The new method will provide substantial quantity of data on surface sediment in coastal areas, using a non-expensive and efficient manner, with a high potential application in different fields of research.

This paper develops a decision support tool that can help fishery authorities to forecast bivalve landings for the dredge fleet accounting for several contextual conditions. These include weather conditions, phytotoxins episodes, stock-biomass indicators per species and tourism levels. Vessel characteristics and fishing effort are also taken into account for the estimation of landings. The relationship between these factors and monthly quantities landed per vessel is explored using multiple linear regression models and data mining techniques (random forests, support vector machines and neural networks). The models are specified for different regions in the Portugal mainland (Northwest, Southwest and South) using six years of data 2010-2015). Results showed that the impact of the contextual factors varies between regions and also depends on the vessels target species. The data mining techniques, namely the random forests, proved to be a robust decision support tool in this context, outperforming the predictive performance of the most popular technique used in this context, i.e. linear regression. Foundation for Science and Technology (FCT, Portugal) [SFRH/BPD/99570/2014] ERDF European Regional Development Fund through the Operational Programme for Competitiveness and Internationalisation - COMPETE Programme [POCI-01-0145-FEDER-006961] National Funds through the FCT Fundacao para a Ciencia e a Tecnologia (Portuguese Foundation for Science and Technology) [UID/EEA/50014/2013] project MONTEREAL MAR Program European fund for Fisheries and Maritime Affairs (EFFM) Portuguese Government info:eu-repo/semantics/publishedVersion

In this study, the genetic diversity of Donax vittatus across the Iberian Peninsula was investigated using four mitochondrial (COI, Cytb, 16S F and M types) and three nuclear (H8, 18S and 285) genes. These same molecular markers were also sequenced in D. semistriatus and D variegatus to address the phylogenetic relationships of the species of the genus Donax common along the European coasts. Our results showed high haplotype diversity in combination with a low nucleotide diversity and a star-shaped network with a predominant haplotype, indicating a recent population expansion for the examined sampling sites of D. vittatus. Furthermore, analyses of population differentiation performed with COI mitochondrial marker, including global Far estimation and pairwise Far values, indicated the non-existence of significant genetic structure in D. vittatus of Northwest Iberian populations. Because these localities show a high genetic similarity, we suggest that D. vittatus could be a potentially alternative exploitable resource, as complement to the D. trunculus fisheries, whose natural stocks have decreased dramatically in some areas. Furthermore, we present for the first time, evidence of DUI in the clams D. vittatus and D. semistriatus. (C) 2017 Elsevier Ltd. All rights reservd. Ministerio de Economia y Competitividad [AGL2016-75288-R AEI/FEDER] Northern Regional Operational Programme (NORTE), through the European Regional Development Fund INDITEX-UDC Portuguese Foundation for Science and Technology (FCT) [SFRH/BPD/108445/2015] [NORTE-01-0145-FEDER-000035] info:eu-repo/semantics/publishedVersion

The main objectives of this study were (i) to provide an updated age-length key for D. trunculus from Atlantic waters, and (ii) to evaluate population dynamics, the timing of recruitment and production parameters of the wedge clam Donax trunculus in two moderately exposed sandy beaches (the protected area of Donana National Park and the tourist destination of Isla Canela) along the littoral of Huelva (SW Spain). First an in-depth analysis of the shell and updated estimation of growth parameters of the intertidal D. trunculus population were performed between January 2014 and July 2015 using two different methods i) thin-layer cross section (TL) (ii) length-frequency distributions (LFD). Von Bertalanffy growth functions provided an asymptotic length of 46 mm (LFD) and 46.7 mm (TL) and growth constants of 0.48 (LFD) and 0.47 yr(-1) (TL) in Donana beach. In addition, several deformities as well as signs of shell repair were observed. Population dynamics analyses through length frequency distribution clarified the timing of recruitment (February-March and July). The mean annual biomass ((B) over bar) of intertidal populations of D. trunculus ranged between 3.03 (Donana) and 3.31 g ash-free dry mass (AFDW) m(-2) yr(-1) (Isla Canela). Individual production showed the highest value at 27 mm length (0.117 g AFDW m(-2) yr(-1)) and annual production (P) ranged between 3.40 (Donana) and 4.91 g (Isla Canela), resulting in renewal rate (P/(B) over bar) values between 1.03 and 1.61, respectively. The present results, together with information on environmental parameters, revealed clear differences in population dynamics and production between beaches related to the presence or absence of a protection figure. European Fisheries Fund info:eu-repo/semantics/publishedVersion

The present study reports the first record of the Monrovia doctorfish, Acanthurus monroviae (Steindachner, 1876) in the Algarve coast (southern Portugal). A female (257 mm TL) was caught 21 April 2016 off the beach of Olhos d’Agua by a small-scale fishing boat operating bottom-set gill nets at approximately 15 m depth. Morphometric and meristic parameters of the specimen are reported and compared with previous records of A. monroviae. This is the second occurrence of this tropical fish species in Portuguese waters and the second northernmost capture ever reported for the northeastern Atlantic. The present record is an additional example of tropicalisation of the ichthyofauna in temperate waters by a thermophilic tropical species. Indeed, although not established in the study area, A. monroviae found a suitable seawater temperature regime in southern Portugal and further expanded its distributional range along the Iberian coasts. For biogeographic purposes, all reported occurrences of this species in the northeastern Atlantic and Mediterranean (including very recent records and sightings) are compiled and mapped.

A multimetric approach was used to detect structural, compositional, and functional shifts in the underlying macrobenthic communities of an offshore mussel (Mytilus galloprovincialis) farm in a Portuguese Aquaculture Production Area. Sampling stations distributed inside and outside this area were used to evaluate sediment descriptors and macrobenthic samples collected before (April and September 2010) and after (June and September 2014) the initiation of mussel farming. Sediment fine fraction, organic matter content, and trace element concentrations were found to increase with depth, independently from the mussel farm. Moreover, the structure and composition of the macrobenthic communities were likewise structured by depth. Turnover was the dominant temporal and spatial pattern of beta diversity for all communities. Furthermore, the functional diversity of these communities was unaffected by the mussel farm. These results suggested that an offshore profile allowed hydrodynamic conditions to weaken the impact of mussel farming and highlighted the importance of conducting an integrative multimetric analysis when studying aquaculture impacts on benthic communities. FEDER Program through the project IAPAA "Avaliacao do impacto da area de producao aquicola da Armona no ecossistema costeiro e comunidades locais" (PROMAR project) [31-03-01-FEP-0014]

The present study reports six new and consecutive records of the Atlantic blue crab (Callinectes sapidus Rathbun, 1896) in the southern coast of Portugal. Specimens were caught during less than two months (22nd November 2018 - 18th January 2019) as bycatch of trammel nets operated by small-scale fishing boats in scattered locations along the Algarve coast and in the Ria Formosa lagoon. Four adult males (221-236 mm carapace width) and two adult females (191-207 mm carapace width) were caught at relatively shallow depths (1-6 m), on muddy and sandy bottoms in the Ria Formosa lagoon and in the Algarve coast. Morphometric parameters of the specimens are compiled and the respective occurrences are mapped for biogeographic purposes. These first three occurrences in the Algarve coast and the second, third and fourth records in the Ria Formosa lagoon, further supported by additional anecdotal evidences and recent sales at the wholesale market, reveal a rapid westward expansion and confirm the establishment of C. sapidus along the southern coast of Portugal. Possible sources of introduction and causes for the distributional expansion are evaluated. The potential impacts of this invasive species on local ecosystems and fishing/harvesting resources are discussed. Fisheries Operational Programme (MAR 2020) European Maritime and Fisheries Fund (EMFF 2014-2020) info:eu-repo/semantics/publishedVersion

This study reports the morphometric relationships and relative growth of 20 uncommon bivalve species collected along the Algarve coast (southern Portugal). Morphometric relationships were established between three linear variables (shell length, height and width) and one ponderal variable (total weight) and the relative growth between variables (isometryvsallometry) was analysed in order to assess their variation throughout ontogeny. In addition, morphometric indices (elongation, compactness, convexity and density) based on ratios of those linear and ponderal variables were calculated in order to further characterize morphologically the bivalve species. A total of 2512 individuals belonging to nine bivalve families were analysed, comprising specimens with broad ranges in both shell length (11.8–109.0 mm SL) and total weight (0.2–354.6 g TW). All morphometric relationships were highly significant (P< 0.001) and displayed invariably high correlation coefficients (r= 0.727–0.998). Among a total of 60 morphometric relationships, 27 isometries, 25 positive allometries and 8 negative allometries were registered. The morphometric indices displayed a remarkable variation among taxa, reflecting the high morphological diversity of these miscellaneous bivalve species. Discriminant analysis provided a spatial visualization of the species morphometric variables that further evidenced their main shape features, the distinctness between some species and families (e.g. Pharidae and Cardiidae) and the morphological resemblance among some species belonging to other families (e.g. Veneridae and Tellinidae). Overall, this information is useful and has practical application in diverse research fields, including studies on systematics and taxonomy, physiology, biology, ecology, fisheries assessment and management.

The reproductive cycle of Acanthocardia tuberculata (Linnaeus, 1758) was studied in M’diq Bay. The gonadal development was determined by means of standard histological techniques, mean oocyte diameters and a condition index. Rough cockle is a gonochoric species with synchronous gonadal development and spawning in males and females. The sex ratio obtained was not significantly different to 1:1. Gametogenesis began in late winter (November) coinciding with the temperature drop. In June, with increasing sea water temperature, most of the population was spent and resting oocytes appeared dispersed in the gonad. Resting stage occurred from August to October, during which time sex could not be determined in 100% of the population. A. tuberculata showed a clear seasonality in its gametogenic cycle, with one spawning peak per year in June. Quantitative measurements of 6318 oocyte diameters indicated the patterns of development observed in the qualitative staging. The results obtained revealed the direct influence of temperature on the reproductive cycle. First sexual maturity occurred at 42.77 mm shell length. The information gathered in this study allowed preliminary management measures to be suggested for the fishery of this species, including a closed season during the main spawning season (May-June) and the establishment of a minimum landing size (at least 50 mm shell length) for A. tuberculata from the Moroccan Mediterranean coast.

This study reports a detailed description of the bycatch, discards and survival rates in the cuttlefish (Sepia officinalis) trap fishery off the Algarve coast (southern Portugal). A total of 86 fishing surveys involving 6,311 cuttlefish traps were performed between May and September from 2009 to 2014. Bycatch species were caught in 1,037 traps (bycatch catchability rate of 16.4%), comprising 1576 individuals with an overall weight of 268.3 kg. During the study period, bycatch CPUEs were 12.5 ind./50 traps and 2.1 kg/50 traps, with bycatch rates of 21.1% by number and 15.9% by weight. Thirty-four species (89.5% of bycatch taxa) were discarded at sea, corresponding to discard rates of 19.5% by number and 11.1% by weight. The short-snouted seahorse, Hippocampus hippocampus (L.), was the third most abundant bycatch species (11.6% No.; 0.4% kg) and the second most discarded (12.6% No.; 0.6% kg), being invariably discarded live and undamaged owing its conservation status. This markedly seasonal small-scale trap fishery constitutes a locally important socio-economic activity during spring and summer, characterised by low bycatch and discard rates, complemented by high survival rates of discards. Agência financiadora Interreg IVB-Atlantic Arc Programme European Union (EU) Fisheries Operational Programme MAR 2020 European Maritime and Fisheries Fund EMFF 2014-2020 info:eu-repo/semantics/publishedVersion

The present study aimed to investigate the response of macrobenthic assemblages along a gradient of metal contamination using a combination of uni- and multivariate methods focusing on their composition, structure and function. A total of six sites were established based on a preliminary survey, which identified three areas with different levels of contamination. These areas were defined as slightly contaminated (SC), moderately contaminated (MC) and highly contaminated (HC). Each area comprised two sites, sampled in four sampling surveys (September 2012, February, May and October of 2013). To investigate the response of the macrobenthic assemblages the number of individuals (N), number of taxa (S), Shannon–Weaver diversity (H′), Pielou's equitability (J′) and different distance-based multivariate measures of β-diversity (complementarity) were analysed. β-diversity as turnover was also analysed together with spatial and temporal changes in the trophic structure. A clear gradient of increasing contamination was consistently detected, but comparisons with available sediment quality guidelines indicated that adverse biological effects may be expected in all areas. This result suggests measuring concentrations of contaminants in the sediment per se may be insufficient to establish a clear link between ecological patterns and the contamination of the system. Also it highlights the difficulty of identifying reference areas in highly urbanized and industrialized estuaries. Only multivariate analysis (dbRDA; both using the taxonomic and trophic composition) and β-diversity as turnover showed a consistent response to metal contamination. Higher heterogeneity, mainly due to contribution of rare species (i.e. species present in a single sampling period), was observed in the least contaminated area (SC), decreasing towards the HC. In terms of the trophic function, a shift from a dominance of carnivores in the SC to the dominance of deposit-feeding organisms (and associations) along the contamination gradient was evident.

The present study reports morphometric relationships and discusses the relative growth in the banded murex (Hexaplex trunculus) and the purple dye murex (Bolinus brandaris) from the Ria Formosa lagoon (southern Portugal). A total of 11 morphometric parameters (eight linear variables: shell length, shell width, total aperture length, aperture length, aperture width, spire length, spire width and siphonal canal length; three ponderal variables: total weight, soft parts weight and shell weight) were analysed in both species. The analyses comprised numerous individuals of both sexes and with broad size ranges (H. trunculus: 10.7–82.8 mm shell length;B. brandaris: 14.6–107.7 mm shell length), fairly representative of the populations from the Ria Formosa lagoon. In general,B. brandarisexhibited greater morphological plasticity and higher variability in shell shape compared withH. trunculus. In both species, the vast majority of morphometric relationships displayed positive allometries, distantly followed by negative allometries and by isometries. AlthoughH. trunculusandB. brandarisare known to lack external sexual dimorphism, several morphometric relationships revealed significant differences in the type of growth between sexes, which should be further confirmed using more powerful techniques, such as geometric morphometric analyses of shell shape.

The bivalve dredge fleet, considered as one of the most important artisanal fleets due to the high value of the catches, is by far the most extensively studied among the Portuguese artisanal segment. Acknowledging the growing presence of marine phycotoxins in the waters, the present study explores their impact on the revenue of the fleet that operates along the coast of mainland Portugal. The results obtained using stochastic frontier analysis models enlighten the harmful impact of algae blooms on the activity of the artisanal dredge fleets. In particular, it was observed that in the Algarve region, where the frequency and the intensity of these episodes is higher, the sustainability of the dredge fishing activity is seriously compromised by the phycotoxins.

Although the bivalve dredge used on the Algarve coast (southern Portugal) is highly selective for the target species, in some periods of the year the bycatch can exceed the catch of the commercial species. The present study aimed to quantify the bycatch and discards, estimate damage and mortality, and propose management measures to minimize discards and mortality. A total of 15 fishing surveys (60 tows) were performed using two types of dredges (“DDredge” targeting Donax trunculus and “SDredge” targeting Spisula solida and Chamelea gallina). Of the 85257 individuals (392.4 kg) of 52 taxa that were caught, 73.4% belonged to the target species, 22.1% to commercially undersized target species and 4.5% to bycatch species. Bycatch rates were lower for SDredge (13.5% in number and 6.3% in weight) than for DDredge (46.0% in number and 32.9% in weight). Damage and mortality rates were also lower using SDredge (1.3% and 1.0% of the total catches, respectively) than using DDredge (4.0% and 2.8% of the total catches). Survival experiments revealed the diverse vulnerability of the taxa and confirmed the influence of the damage score on the mortality rate. The results gathered in the present study encourage the adoption of a bycatch reduction device to reduce both direct and indirect mortality., Aunque la draga de bivalvos utilizada en la costa del Algarve (sur de Portugal) es altamente selectiva para las especies objetivo, en algunos períodos del año la captura incidental puede exceder la captura de las especies comerciales. En este contexto, el presente estudio tuvo como objetivo cuantificar las capturas incidentales y los descartes, estimar el daño y la mortalidad, y proponer medidas de gestión para minimizar los descartes y la mortalidad. Se realizaron un total de 15 embarques (60 arrastres) utilizando dos tipos de dragas (“DDredge” dirigida a Donax trunculus y “SDredge” dirigida a Spisula solida y Chamelea gallina). En total, se capturaron 85257 individuos (392.4 kg) pertenecientes a 52 taxones, distribuidos entre especies objetivo (73.4%), especies objetivo por debajo de la talla legal (22.1%) y especies de captura incidental (4.5%). Las tasas de captura incidental fueron menores en SDredge (13.5% número y 6.3% peso) que en DDredge (46.0% número y 32.9% peso). Las tasas de daños y mortalidad también fueron menores usando SDredge (1.3% y 1.0% de las capturas totales) que usando DDredge (4.0% y 2.8% de las capturas totales). Los experimentos de supervivencia revelaron la diferente vulnerabilidad de los taxones y confirmaron la influencia del nivel de lesiones en la tasa de mortalidad. Los resultados del presente estudio fomentan la adopción de un dispositivo de reducción de capturas incidentales (BRD) para reducir la mortalidad directa e indirecta.

The exploitation of the common octopus Octopus vulgaris in Portugal increased 50% in the last 20 years, largely motivated by the depletion of many fish stocks. Recently, the biomass of this fishery resource sharply decreased in some areas causing serious concern among local fishermen and an effort is underway to advise on novel and sustainable management measures. In this context, the octopus pre-recruit aggregations along the Portuguese coast are identified using georeferenced fishery-independent data, from autumn and winter sampling between 1996 and 2008. The relationships between pre-recruit aggregations and several environmental variables are analyzed to characterize their essential habitats (EFH). Pre-recruits are distributed throughout the Portuguese coast aggregated in 8 distinct recruitment grounds located on the middle-shelf at 11–19 km from the coastline, which are characterized by average bottom depths of 65–110 m and are associated to major rivers and lagoon systems. Within each season pre-recruit abundance is much higher in the south region, while pre-recruit aggregations on the northwest coast showed high inter-annual and seasonal variation driven by environmental variability. The western zone adjacent to Ria Formosa lagoon (southern coast) was identified as the main recruitment ground for O. vulgaris along the Portuguese coast. This is supported by the higher abundance of pre-recruits and by the recurrence of their presence in this area over the years analyzed, both in autumn and winter. The effects of physical variables on pre-recruit abundance modelled with generalized additive models (GAM) showed important regional differences. Bottom salinity and river runoff are the environmental variables that have most impact on pre-recruit distribution and abundance on the west coast, regardless of any seasonal effects. On the other hand, temperature imposes distinct seasonal and regional limitations on pre-recruit distribution, both on the NW and S regions. Pre-recruit preferential habitat is characterized by bottom temperatures of 14 °C, salinity values around 36.0, low precipitation (average

Although the importance of the social, economic, environmental and traditional importance of artisanal fisheries is widely accepted, there is no single internationally accepted definition for this activity, since its characteristics differ among countries. Notwithstanding, it is also generally accepted that artisanal fisheries comprises a group of characteristics that clearly differ from those of the industrial fishing. In the present paper, an objective, simple and easy to use methodology is presented for the segmentation of fishing fleets by using a group of descriptors currently available in the European Union datasets. The numerical descriptors approach (NDA) is a score-based methodology that was applied to several EU fishing fleets from the Atlantic Area. The results obtained allow a more realistic segmentation of the European fishing fleet into artisanal (both coastal artisanal and small-scale fisheries) and non-artisanal than the current limit of 12 m vessels overall length. The procedure can be, and should be, refined and improved by the addition of new descriptors (e.g. operational range of the vessels and fishing effort, time spent at sea as well as other socio-economic indicators) when the necessary information becomes available for the entire European fishing fleet. The NDA represents a flexible tool that could be used at any geographical scale by adapting the final score and/or the numerical ranges of each descriptor.

Polybius henslowii Leach, 1820, a Portunid crab distributed from the British Isles to Morocco and the Mediterranean Sea is caught in high densities by many types of fishing gear and frequently thrown back to the sea. Along the northern coast of Portugal, P. henslowii is an important species discarded in beam trawl fishery. There are no quantitative estimations of discards and very little is known about its biology, information that is needed to value this species. The present work was conducted from March 2007 to December 2010 in order to improve the current knowledge of the reproductive biology of P. henslowii. By-catches were registered aboard commercial vessels that volunteered to participate in the study. In that period P. henslowii represented 57.3% of the total catch and was present in all hauls analysed. The target species, Palaemon serratus (Pennant, 1777), represented 1.2% of the total catch, showing the low selectivity of the fishing gear and the need for suppression of this gear to catch this shrimp species. Differences in size between sexes were found, with males being larger and heavier than females. Mature females occurred mainly in autumn and the carapace width at which 50% of the females reach maturity was estimated to be 37.8 mm, which could be set as the minimum landing size of this potential exploitable resource. A macroscopic ovarian maturity stages classification was proposed, allowing a rapid field assessment of female sexual maturity. This study fills a gap in the knowledge of a very important species discarded in beam trawl fishery that may be basis of further work.

The sword razor clam Ensis arcuatus is the most important commercial species of razor clam in Spain, and its fishery in the Ria de Pontevedra (Galicia, NW Spain) is the most productive. Despite the economic importance of this species, information on its biology is scarce. This study reports shell morphometric relationships, age, and growth rates of E. arcuatus in three fishing beds in the Ria de Pontevedra (Brensa, Bueu and Ons, located in respectively the inner, middle and outer zones of the ria), providing the first estimates of growth parameters for the species in the Iberian Peninsula. Growth was estimated by examination of surface growth rings and internal shell microgrowth patterns (acetate peel technique) that proved to be the most suitable method for growth estimate. Growth of E. arcuatus was slower in Bueu ( L ∞ = 140.4, k = 0.40) followed by Brensa ( L ∞ = 151.91, k = 0.40) and Ons ( L ∞ = 172.7, k = 0.33), and the clams reached commercial size in 1.7, 2.3 and 2.8 years in Ons, Brensa and Bueu, respectively. The differences in growth between sites in relation to environmental parameters are evaluated and the implications for the razor clam fishery are discussed.

The present study aimed to describe the reproductive cycle and estimate the size at sexual maturity of the Manila clam (Ruditapes philippinarum) in the Tagus Estuary (Portugal). Specimens were collected monthly from September 2013 to December 2015 during fishing surveys using bivalve dredges. The gametogenic cycle was described in detail using gonad histology and monitored throughout the study period by the monthly variation in the frequency of gonad maturation stages, mean gonadal index and mean oocyte diameter. This invasive population of R. philippinarum displayed synchronous gonadal development between sexes, with ripening occurring mainly in April and May followed by an extensive spawning period until November–December. Individuals reached the size at first sexual maturity at 29.4 mm in shell length (i.e. before 1 year old). Furthermore, the reproductive strategy, dynamics and potential were compared between the invasive R. philippinarum and the native congeneric carpet shell clam (Ruditapes decussatus). Overall, the data gathered in this study constitutes valuable baseline information to propose conservation strategies and implement management measures to minimize the harmful impacts caused by this invasive species on local ecosystems and native biodiversity, particularly over populations of autochthonous bivalves.

The pullet carpet shell Venerupis corrugata is an economically valuable species in several European countries, however, nowadays stocks are under high fishing pressure. Hatchery production of juveniles for release is a major contributor to strengthen the stock and consequently improve the sustainability of the natural stocks. This study aimed to determine the feasibility of rearing V. corrugata larvae with different larval densities (10, 40 and 200 larvae per mL) in a recirculating aquaculture system (RAS), compared with the traditional larval rearing methodology (Batch). The mean survival, growth and metamorphic rate of V. corrugata larvae in RAS was higher (11.1%; 71.3m; 21.6% respectively) than in the Batch system, in all tested densities. The larval growth was not affected by the initial density until 40 larvae per mL, however, 200 larvae per mL decreased the larval growth in length nearly 54m. The larval rearing time was shortened in 2days in the RAS system. The physical, chemical and microbiologic parameters suggested that the tested densities were not excessive to disturb the biofilter stability of RAS. The V. corrugata larval rearing performed at high larval stocking densities in RAS system present a reduction in the operating costs to produce this species. Marinaqua (PROMAR) and Reproseed (FP7-KBBE-2009) project and acknowledge Ciência 2008 program (FCT).

The surf Spisula solida and the striped venus Chamelea gallina clams support important fisheries in Europe. These fisheries have been affected by inter-annual fluctuations in stock abundance and recruitment failures. Aquaculture could contribute to address these problems through the production of larvae or juveniles for stock-enhancement programmes. In the present study, the prerequisites to produce these species in hatchery were established. Of the different methods used to obtain gametes (thermal stimulation, scarification and flow through), C. gallina spawned in the flow through only. By its turn, the best method for obtaining gametes for S. solida was stripping. Higher survivals of D-larvae were found at 15 and 17 degrees C. The greatest larval survival and growth rates were obtained from larvae fed Isochrysis aff. galbana (T-iso). First C. gallina and S. solida pediveliger larvae were found at day 8 and day 26 respectively. The presence of metamorphosed larvae found even in the unfed treatment for C. gallina and for S. solida is an advantage for aquaculture production. After metamorphosis, the S. solida juveniles' survival was quite low, whereas there was no mortality for C. gallina juveniles reared without substrate regardless the diet provided. Juveniles fed the binary diet (Chaetoceros calcitrans - C. cal + T.iso) and the monodiet T-iso showed relatively higher growth in shell length and weight than C. cal. The hatchery production of these two species was possible, however the results of this study showed that C. gallina can be more attractive for aquaculture than S. solida.

This paper provides a review of the literature on applications of the Driving forces, Pressure, State, Impact, Response (DPSIR) framework to fisheries. The interpretation given to each DPSIR category differs in existing studies, and as a result the indicators used to support fisheries management also vary considerably. This impairs comparisons concerning the state of different fishery systems, and does not provide a common base of knowledge concerning potential management measures that can be adopted in a given context. This paper clarifies the interpretation of each DPSIR category and proposes a set of indicators that can be applied in fishery contexts. The set of indicators proposed is also classified according to sustainability dimensions. It is argued that organising the indicators according to the DPSIR framework and sustainability dimensions (ecologic, economic, social and governance) is a positive contribution to serve as a guideline for future applications to adopt standardized indicators and improve fisheries management.

The present work presents an integrated comparative assessment of the sustainability of fishing tactics or métiers (combinations of area, season, fishing gear, and target species). An index, which includes biological, conservation, socioeconomic, and management criteria, was created for this purpose: the “Métier Sustainability Index” (MSI25). It was designed using the traffic lights approach and comprises 25 indicators that refer to the “health” of the fisheries. Additionally, the MSI25 provides an indication of the “certainty” of that information with regard to the data type/heterogeneity. Subsequently, the index was tested using data from six case studies (81 métiers) from the Mediterranean and the Atlantic. The index showed that 63.0% of the métiers were “sustainable”, 21.0% were “unsustainable” and 16.0% were “under pressure”; 59.3% of characterizations were considered as “certain”. The index evaluation showed significant differences between areas and gears. This paper considers the characteristics of the datasets used, the case management status, and the applicability of the index in improving the management of specific fisheries. Overall, the MSI25 was found to be a useful tool for the evaluation and management of highly heterogeneous fisheries and data from various sources and types. The data collection in Tabarca Marine Reserve was financed by the EU DG Fisheries through Project BIOMEX (QLRT-2001-00891). Data collection on the Croatian coast was carried out by the Institute of Oceanography and Fisheries through Project 001-0013077-0844. We gratefully acknowledge the Portuguese Directorate-General of Marine Resources and the project “Desarrollo sostenible de las pesquerías artesanales del Arco Atlántico” (PRESPO) under the INTERREG IVB Programme-Atlantic Area, co-financed by the EU (ERDF Programme) for providing the data for the Portuguese case study.

This study estimated the age of Hexaplex trunculus (Gastropoda: Muricidae) by analysing operculum growth marks. Surface striae and adventitious layers were counted in opercula of H. trunculus from the Ria Formosa Lagoon (southern Portugal) and from the Bizerte Lagoon (northern Tunisia), and in aquacultured individuals used for validation of the ageing technique. Operculum growth features were also compared between H. trunculus populations under contrasting environmental conditions (namely seawater temperature). Despite high inter-individual variability, all H. trunculus populations displayed a clear increasing trend in the number of striae and layers with increasing specimen size. The operculum marginal growth revealed that opercular deposition is not annual. Instead, a few growth marks are formed in the operculum each year, which was confirmed with reared specimens. In both ageing methods, considerable variation in the number of counts at a determined shell length indicates that operculum growth marks should be interpreted cautiously because they might not correspond accurately with individual age. Because of the subjectivity inherent to either method, counting striae and layers in opercula only provides rough age estimates of H. trunculus. published

The present study provides updated information on amphipod assemblages of the southern Portuguese coast, the most south-western part of continental Europe. The influence of depth and sediment type on the spatial distribution of shallow soft-bottom amphipods was tested by means of univariate and multivariate methods. Samples were collected down to 40 m depth within areas ranging from very fine sand to gravel. The ratio between density and diversity was found to increase with depth and from coarser to finer sediments. Both physical variables tested were found to play a major role in structuring amphipod assemblages. However, some dominance of depth was evident as samples were mainly separated according to this variable. Moreover, while only 15 taxa were common to all depth levels, 35 were collected from all sediment types. Both depth and sediment type may override the potential effects of geographical location, as samples from different areas along the southern Portuguese coast were biologically related. A peculiar habitat was sampled in this study: a maerl bed, which was confirmed to be a hotspot of density. Nevertheless, this habitat did not harbor a distinct amphipod assemblage but some taxa such as Caprella spp., Lembos websteri, lysianassids and Gammarella fucicola were preferentially collected there. The biogeographical analysis pointed out the occurrence of 8% of Mediterranean endemic species, confirming the influence of the Mediterranean Sea beyond the Strait of Gibraltar, and the Atlantic-Mediterranean feature of the amphipod fauna of this geographically relevant area. The present results support the need to interpret the spatial distribution patterns of marine species in relation to the combined effect of depth and sediment characteristics.

The present study reports the growth rate of the purple dye murex, Bolinus brandaris (Gastropoda: Muricidae), estimated from mark-recapture experiments. A total of 1067 specimens (shell length = 43.4±8.1 mm, range = 14.6−78.4 mm) were marked with Dymo® tape tags and released in a semi-intensive fish culture earthen pond. After a period at liberty ranging from almost two months to around two years, 288 individuals were recaptured (shell length = 67.4±6.2 mm, range = 45.3−88.6 mm), which corresponded to a recapture rate of 27.0%. At recapture, only one specimen had lost the tag (tag loss rate < 0.1%) and all remaining tags were intact and legible. Mean monthly growth rates were 0.9±1.0 mm in shell length, 0.4±0.5 mm in shell width and 0.7±0.7 g in total weight. Growth rates showed high inter-individual variability and an evident decreasing trend with specimen size. Comparison of growth rates with similar information available for other muricids confirmed that B. brandaris is a relatively slow-growing species. This provides valuable information for both fisheries management and for assessing the potential of B. brandaris as a candidate species for molluscan aquaculture.

Macrobenthic community changes were assessed in relation to different levels of fishing intensity following a before—after, control—impact experimental design with a control, a moderately impacted area, and a highly impacted area. Samples were collected before, immediately after, and 1, 2, 3, 7, 14, 30, and 120 days after fishing. Communities in fished areas showed short-term significant effects on abundance, number of species, biomass, and diversity 1–3 days after fishing, with fished areas presenting lower mean values than the control. The opposite pattern was found for the carnivore-to-suspension feeding ratio. The main taxonomic groups showed different responses to fishing. Only gastropod abundance and the abundance of the polychaete families Pectinariidae and Sabellidae showed persistent negative effects of fishing. The effects on these polychaete families confirms the sensitivity of sedentary and suspension feeders to fishing. Some variables presented slightly higher negative effects with f...

Near-shore benthic biotopes, in the 2–30 m depth range, were analyzed and mapped using a combination of biological, sedimentary and acoustic data to interrogate the utility of these methods. The surveyed area covered approximately 270 km2, along 80 km of the Southeast coast of Portugal. The acoustic data were acquired with a single beam ground discrimination system (QTC VIEW, Series V), connected to a dual frequency echo sounder (50 and 200 kHz). Sediment grain size and macrofaunal community data were obtained by grab sampling at 88 sites. The sedimentary and the biological data were subjected to classification and ordination analysis and the acoustic data obtained with the two frequencies were analyzed individually with the QTC IMPACT (v3.4) software and classified into acoustic classes. The affinity groups obtained with the three datasets were mapped using a Geographic Information System. The study area showed an inshore-offshore pattern with sands ranging from very fine to very coarse, revealing a sediment distribution in the near-shore shelf comprised by two main areas; a very fine/fine sand area up to 7–10 m depth and a very coarse/coarse sand area offshore. In turn, the biological data also showed an inshore-offshore pattern, identifying two main biological assemblages: fine/very fine sand and coarse/very coarse sand communities. Furthermore, the biological pattern clearly reflected the hydrodynamic conditions of the area, from highly hydrodynamic shallow depth to the calmer deeper areas. Accordingly, species richness and densities were lower at shallow areas than at deeper depth. The acoustic data identified the prevailing biosedimentary gradients along the inshore-offshore direction. Overall, the results obtained here showed that the acoustic system could identify two main areas based on sediment grain size, which closely related to the two main biological communities (groups A and B). This study indicates the importance of combining several layers of information in order to increase the spatial resolution of the main biotope distribution (validating the acoustic data) and detail their sub-divisions (ground-truth sampling). Furthermore, we show that designing ground-truth samples on the basis of the acoustic diversity data allows the biological data to “speak” for itself. In general, acoustic techniques are used as a means to optimize ground-truth sampling. This will only be valid if acoustics can capture all the essence of biotope heterogeneity. If this is not the case, special attention should be given when using broad scale methods (acoustic remote sensing) devoted to biotope mapping. This work was supported by the Portuguese FCT (Fundação para a Ciência e a Tecnologia) under the project “ACOSHELF: Coastal shelf ecosystem studies using acoustics” (POCI/MAR/56441/2004 and PPCDT/MAR/56441/04) and by CESAM own research funds. Our colleague Rui Marques gave invaluable help in preparing the acoustic system and in data collection. published

The present work aimed to identify the main environmental drivers shaping temporal and spatial dynamics of macrobenthic communities within a eutrophic coastal lagoon. Sediments in the Óbidos lagoon showed a gradient of increasing metal contamination from the inlet area to inner branches. The mid-lower lagoon area exhibited an intermediate contaminated condition between the inlet and upstream areas, suggesting that the effects of the organic loadings into the lagoon may be reflected until this area. This transitional feature was corroborated by biological data, with macrobenthic assemblages displaying characteristics of down- and upstream areas. Macrobenthic abundance peaked in winter, which was associated with a higher nutrient availability (mainly ammonium) and the proliferation of green macroalgae in mid-lower and inner lagoon areas. However, massive macroalgae growth resulted in a sharp decrease of macrobenthic diversity and abundance in spring, particularly where the higher amounts of decaying algae were detected. Higher dissimilarities between assemblages were detected during winter (and spring, for trophic composition), while in summer, differences were highly attenuated. The least contaminated area (close to the sea inlet) experienced smaller temporal variations for environmental variables, as well as the lowest temporal biological variability. This area was dominated by carnivores, which were related with increased salinity. Deposit-feeders were numerically dominant in the lagoon, being generally spread within organically enriched sandy and muddy areas. The high concentration of chlorophyll a and suspended particulate matter in water was reflected in the abundance of deposit-feeders/suspension-feeders, taking benefit of the high primary productivity. On the other hand, deposit-feeders/herbivores responded to the decay of macroalgae mats in the sediment. Biological associations varied with the biological data used (taxonomic versus trophic group composition; abundance versus biomass), highlighting the relevance of the combination of different data analysis' approaches. In general, BIOENV analysis indicated total phosphorus, biomass of Ulva, metals and organic carbon and nitrogen as being significantly influencing benthic patterns. On the other hand, discrepancies in ecological behaviours of some taxa were also detected in the present study stressing the need for additional studies on the relationships between macrobenthic communities and environmental variables. Implications of the present results for monitoring studies are discussed.

The karyotype of the common ragworm Hediste diversicolor (OF Muller 1776) (Poly- chaeta, Nereididae) was determined for the first time; it comprised 8 metacentric, 2 submetacentric and 4 subtelocentric chromosome pairs. In a few metaphases, we observed an easily distinguishable undersized supernumerary chromosome. Recent taxonomic revisions of the family Nereididae have highlighted the need for further studies in several genera. To understand the taxonomic relationships in this family, we carried out a comparative karyological analysis through multivariate analyses (prin- cipal component analysis and hierarchical cluster analysis), using morphological and structural fea- tures of karyotypes, between H. diversicolor and 10 other Nereididae species. This analysis showed the distinctiveness of H. limnicola, H. diversicolor and Nereis oligohalina, which could be explained by the presence of 3 or 4 morphological categories of chromosomes in these species. The remaining species presented more symmetrical karyotypes with only 2 morphological categories and were grouped in 2 main clusters, mainly due to different percentages of metacentric chromosomal pairs. This study highlights the importance of cytogenetics in taxonomic studies of polychaetes.