1. A combined literature and in silico analysis enlightens the role of the NDRG family in the gut
- Author
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Nikhil Thapar, Conor J. McCann, Manon van Engeland, Erwin Brosens, Simone L. Schonkeren, Nathalie Vaes, Veerle Melotte, Alexander Koch, Robert M.W. Hofstra, and Clinical Genetics
- Subjects
EXPRESSION ,0301 basic medicine ,Colorectal cancer ,In silico ,Tumor suppressors ,Biophysics ,Muscle Proteins ,Cell Cycle Proteins ,Nerve Tissue Proteins ,HUMAN COLON-CARCINOMA ,Biology ,Biochemistry ,COLORECTAL-CANCER ,CELL-PROLIFERATION ,03 medical and health sciences ,medicine ,Animals ,Humans ,Computer Simulation ,Epithelial–mesenchymal transition ,Molecular Biology ,Gastrointestinal Neoplasms ,N-MYC ,Tumor Suppressor Proteins ,DOWNSTREAM-REGULATED GENE-1 ,Intestinal tract ,N-myc downstream-regulated gene ,Intracellular Signaling Peptides and Proteins ,Neural crest ,Cancer ,medicine.disease ,EPITHELIAL-MESENCHYMAL TRANSITION ,Embryonic stem cell ,Review Literature as Topic ,030104 developmental biology ,Cancer research ,Biomarker (medicine) ,METASTASIS SUPPRESSOR NDRG1 ,TUMOR INVASION ,STOOL DNA TEST ,Biomarkers ,Function (biology) - Abstract
Background The N-Myc Downstream-Regulated Gene (NDRG) family comprises four members that function in cellular processes like proliferation and differentiation. While NDRG1 and NDRG2 are extensively studied, knowledge regarding NDRG3 and NDRG4, despite its recognition as a well-established early-detection marker for colorectal cancer (Cologuard®), is sparse. Scope of review To summarize expression, biomarker potential and functional mechanisms of the NDRGs in the developing, mature and cancerous gut, we combine current literature and in silico analyses from the TCGA-database, GTEX Project, E14.5 mouse intestine and enteric neural crest cells, and an RNA-sequencing time-series of human embryonic colonic samples. Major conclusions This study reveals that all members display a differential expression pattern in the gut and that NDRG1, NDRG2 and NDRG4 (1) can serve as biomarker for colorectal cancer and (2) have tumor suppressive properties mainly affecting cell proliferation and epithelial-mesenchymal transition. General significance Similar effects of the NDRGs on the key-hallmarks of cancer, could implicate analogous functions in other tissue/cancer types.
- Published
- 2018
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