1. Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex
- Author
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John Merlino, Aaron E. Darling, Garry S. A. Myers, Mathieu Fourment, Piklu Roy Chowdhury, Steven P. Djordjevic, Elaine Cheong, Priyanka Hastak, and Thomas Gottlieb
- Subjects
0301 basic medicine ,Serotype ,Lineage (genetic) ,Epidemiology ,030106 microbiology ,Immunology ,E. coli ST131 clonal complex ,Drug resistance ,Biology ,medicine.disease_cause ,Microbiology ,Genome ,03 medical and health sciences ,Plasmid ,Virology ,Drug Discovery ,Escherichia coli ST8196 ,medicine ,Escherichia coli ,Genetics ,Phylogenetic tree ,qnrB4 ,Subclade ,Articles ,General Medicine ,bla CTX-M-15 ,ST131- H30Rx ,030104 developmental biology ,Infectious Diseases ,Parasitology ,Research Article - Abstract
The H30Rx subclade of Escherichia coli ST131 is a clinically important, globally dispersed pathogenic lineage that typically displays resistance to fluoroquinolones and extended spectrum β-lactams. Isolates EC233 and EC234, variants of ST131-H30Rx with a novel sequence type (ST) 8196, isolated from unrelated patients presenting with bacteraemia at a Sydney Hospital in 2014 are characterised here. EC233 and EC234 are phylogroup B2, serotype O25:H4A, and resistant to ampicillin, amoxicillin, cefoxitin, ceftazidime, ceftriaxone, ciprofloxacin, norfloxacin and gentamicin and are likely clonal. Both harbour an IncFII_2 plasmid (pSPRC_Ec234-FII) that carries most of the resistance genes on an IS26 associated translocatable unit, two small plasmids and a novel IncI1 plasmid (pSPRC_Ec234-I). SNP-based phylogenetic analysis of the core genome of representatives within the ST131 clonal complex places both isolates in a subclade with three clinical Australian ST131-H30Rx clade-C isolates. A MrBayes phylogeny analysis of EC233 and EC234 indicates ST8196 share a most recent common ancestor with ST131-H30Rx strain EC70 isolated from the same hospital in 2013. Our study identified genomic hallmarks that define the ST131-H30Rx subclade in the ST8196 isolates and highlights a need for unbiased genomic surveillance approaches to identify novel high-risk MDR E. coli pathogens that impact healthcare facilities.
- Published
- 2020
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