1. Identification and bioinformatic analysis of Aux/IAA family based on transcriptome data of Bletilla striata
- Author
-
Chen Ronghui, Shangguan Yanni, Huang Ceyin, Delin Xu, Wen Wei'e, Chun Li, Shiji Xiao, Lin Li, and Liu Houbo
- Subjects
0106 biological sciences ,0301 basic medicine ,Arabidopsis ,01 natural sciences ,Applied Microbiology and Biotechnology ,Bletilla striata ,Transcriptome ,genome-wide ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,Arabidopsis thaliana ,heterocyclic compounds ,Phylogeny ,Plant Proteins ,Genetics ,chemistry.chemical_classification ,biology ,Phylogenetic tree ,food and beverages ,Gene Expression Regulation, Developmental ,Aux/IAA gene family ,evolutionary analysis ,General Medicine ,Biological Evolution ,Plant Tubers ,Biotechnology ,Research Article ,Research Paper ,Genetic Markers ,lcsh:Biotechnology ,Bioengineering ,03 medical and health sciences ,Auxin ,lcsh:TP248.13-248.65 ,EST-SSR ,Gene family ,Amino Acid Sequence ,Orchidaceae ,Gene ,bioinformatic ,Indoleacetic Acids ,Sequence Homology, Amino Acid ,fungi ,Computational Biology ,biology.organism_classification ,030104 developmental biology ,chemistry ,Family based ,Dendrobium ,Sequence Alignment ,010606 plant biology & botany - Abstract
Auxin/Indole-3-Acetic Acid (Aux/IAA) genes are involved in auxin signaling pathway and play an important role in plant growth and development. However, many studies focus on Aux/IAA gene families and much less known in Bletilla striata. In this study, a total of 27 Aux/IAA genes (BsIAA1-27) were cloned from the transcriptome of Bletilla striata. Based on a phylogenetic analysis of the Aux/IAA protein sequences from B. striata, Arabidopsis thaliana and Dendrobium officinale, the Aux/IAA genes of B. striata (BsIAAs) were categorized into 2 subfamilies and 9 groups. While BsIAAs were more closer to those of D. officinale compared to A. thaliana. EST-SSR marker mining test showed that 4 markers could be stably amplified with obvious polymorphisms among 4 landraces. Our results suggested that BsIAAs were involved in the process of tuber development and provided insights into functional roles of Aux/IAA genes in B. striata and other plants., Graphical Abstract In this paper, we identified the 27 members of the Aux/IAA gene family which can be divided into 2 groups and 9 subfamilies. The similar branches of Aux/IAA proteins had the same or similar motifs, such as genes between BsIAA10 and BsIAA12, BsIAA11 and BsIAA13, BsIAA18 and BsIAA20, indicating that Aux/IAA proteins were conserved. Among them, BsIAAs were more closer to those of D. officinale compared to A. thaliana.
- Published
- 2019