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Worldwide, increasing amounts of dams and weirs have been established in rivers in recent decades, often with drastic effects on their ecosystems. Between late 2009 and 2011, 16 large-scale dams were built in the main channels of the four largest rivers in South Korea, eight of these along the main channel of Nakdong River (300 km, 520 km in total). We studied the effect of these constructions on the fish community in the riparian zone based on intensive fish field surveys conducted in the littoral zone during 2007–2017, analysis of fishermen's catch data and molecular analysis of the diet of the keystone species, largemouth bass (Micropterus salmoides). Our results, based on RDA and GLM analyses, showed that environmental characteristics and fish species composition changed significantly with dam construction. Total fish abundance and biomass decreased after the start of the weir construction and fish richness decreased with time. The abundance and biomass of exotic fish decreased during construction but recovered afterwards, leading to higher proportions of exotics. Dominance and Shannon indices did not change significantly from before to after construction, while the Evenness index showed a significant decreasing trend. A comparison of the diet composition of largemouth bass showed decreasing genetic variation after construction. The changes in Functional Feeding Group (FFG) of the benthic communities at the study sites did not coincide with FFG changes in the prey items of largemouth bass, indicating a transition in feeding mode from before to after construction. In conclusion, the endemic and native fish species were most sensitive and showed lower resilience to disturbance by the large-scale dam construction than the translocated and exotic species, and the lake-like ecosystems after construction markedly improved the competitive capacity of these exotic fish over the native and endemic species in the riparian zone of the river.

Simple Summary Copepods are important components of marine coastal food chains, supporting fishery resources by providing prey items mainly for fish. Copepods interact with small microorganisms via feeding on phytoplankton. DNA methods can determine the gut contents of copepods and provide important information regarding how copepods interact with phytoplankton and bacteria. In the present study, we designed a method for extracting the gut content DNA from small-sized copepods that are important in coastal and brackish areas. Based on DNA analyses, Rhodobacteraceae, which is common in marine waters and sediments, was most abundant in the gut contents of the three copepod species (Acartia hudsonica, Sinocalanus tenellus, and Pseudodiaptomus inopinus). However, the detailed composition of bacteria was different among species and locations. The results suggested that environmental variables and species-specific feeding behaviour can affect the gut bacterial community. The bacteria play an important role in digestion and in the overall degradation and release of metabolites to the outside water. Further analyses with advanced methods regarding DNA isolation from small microorganisms and identification skills using a DNA library for better understanding of biological interactions and matter cycling in marine food webs are required. Abstract The gut bacterial communities of copepods can affect metabolic processes, and consequently, their activity can be related to the release of organic substances to the environment. Hence, they are important for organic matter cycling in marine coast food webs. However, information regarding the variation in gut bacterial communities based on copepod species and environmental variations is limited. We analysed the differences in gut bacterial communities from dominant copepod species, i.e., Acartia hudsonica, Sinocalanus tenellus, and Pseudodiaptomus inopinus, in a brackish reservoir. The core bacteria among the copepod species and locations consisted of the following main operational taxonomic units (OTUs): Novosphingobium capsulatum and the family Rhodobacteraceae belonging to Alphaproteobacteria, which is abundant in seawater and freshwater aquatic ecosystems as a zooplankton-associated bacterial community. The bacterial community composition of each copepod (except the core species) showed high variability. The bacterial community diversity differed depending on the copepod species and the sites’ environmental conditions, especially salinity, e.g., compositional variations in the bacterial community of P. inopinus were high at sites with low salinity. Therefore, the gut bacterial community of each copepod species responds differently to the environment.

Periphyton plays an important role in lake ecosystems processes, especially at low and intermediate nutrient levels where periphyton contribution to primary production can be similar to or exceed that of phytoplankton. Knowledge of how periphyton responds to key drivers such as climate change and nutrient enrichment is, therefore, crucial. We conducted a series of mesocosm experiments over four seasons to elucidate the responses of periphyton communities to nutrient (low and high, TN-0.33 mg L-1 TP-7.1 mu g L-1 and TN-2.40 mg L-1 TP-165 mu g L-1, respectively), temperature (ambient, IPCC A2 scenario and A2 + 50%) and plant type (two submerged macrophytes with different morphological structural complexity: Potamogeton crispus and Elodea canadensis, and their corresponding plastic imitations with similar size and structure). We found a noticeable seasonality in the abundance and composition of periphyton. In spring and summer, periphyton abundances were significantly higher in the turbid-high-nutrient state than in the clear-low-nutrient state, and in summer they were notably higher at ambient temperature than in climate scenario A2 and A2 + 50%. In contrast, periphyton abundances in autumn and winter were not influenced by nutrient and temperature, but they were notably higher on plants with a more complex morphological structure than simple ones. The genus composition of periphyton was significantly affected by nutrient-temperature interactions in all seasons and by plant type in winter. Moreover, periphyton functional composition exhibited noticeable seasonal change and responded strongly to nutrient enrichment and temperature rise in spring, summer, and autumn. Our results suggest that the effect of warming on periphyton abundance and composition in the different seasons varied with nutrient state and host plant type in these mesocosms, and similar results may likely be found under field conditions.

Chironomidae larvae play an important role in the food chain of river ecosystems in Korea, where it is dominant. However, detailed information on the diet of Chironomidae larvae are still lacking. The purpose of this study was to identify the gut contents of 4th instar larvae of a Chironomidae inhabiting four large-scale weirs (Sejong Weir, Juksan Weir, Gangjeong-Goryeong Weir, and Dalseong Weir) using a DNA meta-barcoding approach. We found that dominant Operational Taxonomic Unit (OUT) was assigned to Paractinolaimus sp. (Nematoda), and the sub-dominant OTU was assigned to Dicrotendipes fumidus (Chironomidae). The most common OTUs among the individuals included phytoplankton, such as Tetrahymena sp., D. armatus, Pseudopediastrum sp., Tetradesmus dimorphus, Biddulphia tridens, and Desmodesmus spp. We calculated the selectivity index (E&rsquo, ) and provided scientific evidence that Chironomidae larvae have a significant preference (E&rsquo, &gt, 0.5) for Desmodesmus armatus, E. minima, and T. dimorphus, while it does not show preference for other species found in its gut. Differences in physico-chemical factors, such as water quality, nutrients, Chl-a, and carbon concentrations, resulting from anthropogenic impacts (i.e., construction of large-scale weirs) as well as the particle size of prey organisms (small-sized single cell) and effects of chemicals (chemokinesis) could affect the feeding behavior of Chironomidae larvae.

We designed an experiment to analyze the gut content of Rotifera based on DNA barcoding and tested it on Asplanchna sp. in order to ensure that the DNA extracted from the rotifer species is from the food sources within the gut. We selected ethanol fixation (60%) to minimize the inflow effects of treated chemicals, and commercial bleach (the final concentration of 2.5%, for 210 s) to eliminate the extracellular DNA without damage to the lorica. Rotifers have different lorica structures and thicknesses. Therefore, we chose a pretreatment method based on Asplanchna sp., which is known to have weak durability. When we used the determined method on a reservoir water sample, we confirmed that the DNA fragments of Chlorophyceae, Diatomea, Cyanobacteria, and Ciliophora were removed. Given this result, Diatomea and cyanobacteria, detected from Asplanchna, can be considered as gut contents. However, bacteria were not removed by bleach, thus there was still insufficient information. Since the results of applying commercial bleach to rotifer species confirmed that pretreatment worked effectively for some species of rotifers food sources, in further studies, it is believed to be applicable to the gut contents analysis of more diverse rotifers species and better DNA analysis techniques by supplementing more rigorous limitations.

The study aims to assess the spatial distribution of benthic macroinvertebrate communities in response to the surrounding environmental factors related to land use and water quality. A total of 124 sites were surveyed at the Seomjin River basin in May and September 2017, respectively. We evaluated the abundance and composition of benthic macroinvertebrate communities based on nine subwatersheds. Subsequently, we compared the benthic information with the corresponding land use and water quality. To comprehensively explore the spatiotemporal distinction of benthic macroinvertebrate communities associated with those ambient conditions, we applied canonical correspondence analysis (CCA). The CCA results explicitly accounted for 61% of the explanatory variability, the first axis (45.5%) was related to land-use factors, and the second axis (15.5%) was related to water quality. As a result, the groups of benthic communities were distinctly characterized in relation to these two factors. It was found that land-use information is primarily an efficient proxy of ambient water quality conditions to determine benthic macroinvertebrates, such as Asellus spp., Gammarus spp., and Simulium spp. in a stream ecosystem. We also found that specific benthic families or genera within the same groups (Coleoptera, Diptera, Ephemeroptera, and Trichoptera) are also differentiated from ambient water quality changes as a secondary component. In particular, the latter pattern appeared to be closely associated with the impact of summer rainfall on the benthic community changes. Our study sheds light upon projecting benthic community structure in response to changes of land use and water quality. Finally, we conclude that easily accessible information, such as land-use data, aids in effectively characterizing the distribution of benthic macroinvertebrates, and thus enables us to rapidly assess stream health and integrity.

The complete mitochondrial genome of Stictochironomus akizukii (Tokunaga) was sequenced. The circular mitochondrial genome is 15,052 bp and consists of 13 protein-coding, 3 ribosomal RNAs, and 22 transfer RNA genes (GenBank accession no. MT185679). Results of maximum likelihood analysis showed that this species clustered with other species of the family Chironomidae. This study will contribute to the phylogenetics of genus Stictochironomus and the other genera of Chironomidae.

The length‐weight relationships (LWRs) for three freshwater fish species in catchment area of Hoiya River, Republic of Korea, were analyzed. Fish samples were collected quarterly using scoop‐nets (5 mm mesh size), casting nets (7 mm mesh size) from 2017 to 2018. For LWRs using the general equation from Froese (2006), the parameter b ranges from 3.14 (Oryzias latipes) to 3.37 (Iksookimia longicorpa). LWRs data of these two species have not yet been listed in FishBase.

Length-weight relationships of 4 fish species collected from a seagrass Zostera marina bed in Koje Bay on the southern coast of Korea were analyzed. The fish samples were captured using a seine net (mesh size 6mm) at water depth of approximately 1.5 meters during low tide. Fishes were collected 8 times from summer 2016 to spring 2017. The regression parameter b varied between 2.47 for Favonigobius gymnauchen and 3.03 for Ditrema temminckii temminckii.

The nonlinearity and complexity of coastal ecosystems often cause difficulties when analyzing spatial and temporal patterns of ecological traits. Environmental DNA (eDNA) monitoring has provided an alternative to overcoming the aforementioned issues associated with classical monitoring. We determined aquatic community taxonomic composition using eDNA based on a meta-barcoding approach that characterizes the general ecological features in the Gwangyang Bay coastal ecosystem. We selected the V9 region of the 18S rDNA gene (18S V9), primarily because of its broad range among eukaryotes. Our results produced more detailed spatial patterns in the study area previously categorized (inner bay, main channel of the bay and outer bay) by Kim et al. (2019). Specifically, the outer bay zone was clearly identified by CCA using genus-level identification of aquatic organisms based on meta-barcoding data. We also found significant relationships between environmental factors. Therefore, eDNA monitoring based on meta-barcoding approach holds great potential as a complemental monitoring tool to identify spatial taxonomic distribution patterns in coastal areas.

The use of separated overfire air (SOFA) has become a standard technique of air staging for NOx reduction in the coal-fired boiler and can also be applied to existing boilers by retrofit. This study was to optimize the air distribution for the proposed SOFA installation in a 500 MWe tangential-firing boiler that has 20 identical units in Korea. Using computational fluid dynamics (CFD) incorporating advanced coal combustion submodels, the reference case was established in good agreement with the design data, and different flow ratios of burner secondary air, close-coupled OFA (CCOFA), and SOFA were evaluated. Increasing the total OFA ratio effectively suppressed NO formation within the burner zone but had a negative impact on the boiler performance. With moderate air staging, NO reduction became active between the CCOFA and SOFA levels and, therefore, the OFA distribution could be optimized for the overall boiler performance. For total OFA ratios of 25% and 30% with respective burner zone stoichiometric ratios of 0.847 and 0.791, increasing the SOFA ratio to 15% and 20%, respectively, was ideal for decreasing the unburned carbon release and ash slagging as well as NO emission. Too high or low SOFA ratios rapidly increased the unburned carbon because of inefficient mixing between the strong air jets and char particles. Based on these ideal cases, the actual air distribution can be adjusted depending on the coal properties such as the ash slagging propensity.

Our study focuses on methodological comparison of plankton community composition in relation to ecological monitoring and assessment with data sampling. Recently, along with the advancement of monitoring techniques, metabarcoding has been widely used in the context of environmental DNA (eDNA). We examine the applicability of eDNA metabarcoding for effective monitoring and assessment of community composition, compared with conventional observation using microscopic identification in a coastal ecosystem, Gwangynag Bay in South Korea. Our analysis is based primarily on two surveys at a total of 15 study sites in early and late summer (June and September) of the year 2018. The results of our study demonstrate the similarity and dissimilarity of biological communities in composition, richness and diversity between eDNA metabarcoding and conventional microscopic identification. It is found that, overall, eDNA metabarcoding appears to provide a wider variety of species composition, while conventional microscopic identification depicts more distinct plankton communities in sites. Finally, we suggest that eDNA metabarcoding is a practically useful method and can be potentially considered as a valuable alternative for biological monitoring and diversity assessments.

Our study aims to identify the spatial characteristics of water quality and sediment conditions in relation to fisheries resources, since the productivity of fisheries resources is closely related to the ambient conditions of the resource areas. We collected water quality samples and sediment contaminants from twenty-one sites at Gwangyang Bay, Korea, in the summer of 2018. Our study sites covered the area from the Seomjin River estuary to the inner and outer bays. To spatially characterize physicochemical features of Gwangyang Bay, we used Self-Organizing Map (SOM), which is known as a robust and powerful tool of unsupervised neural networks for pattern recognition. The present environmental conditions of Gwangyang Bay were spatially characterized according to four different attributes of water quality and sediment contamination. From the results, we put emphasis on several interesting points: (i) the SOM manifests the dominant physicochemical attributes of each geographical zone associated with the patterns of water quality and sediment contamination, (ii) fish populations appear to be closely associated with their food sources (e.g., shrimps and crabs) as well as the ambient physicochemical conditions, and (iii) in the context of public health and ecosystem services, the SOM result can potentially offer guidance for fish consumption associated with sediment heavy metal contamination. The present study may have limitations in representing general features of Gwangyang Bay, given the inability of snapshot data to characterize a complex ecosystem. In this regard, consistent sampling and investigation are needed to capture spatial variation and to delineate the temporal dynamics of water quality, sediment contamination, and fish populations. However, the SOM application is helpful and useful as a first approximation of an environmental assessment for the effective management of fisheries resources.

In the Nakdong River, an estuary barrage was constructed in 1987, and it divided the freshwater and the seawater, resulting in a change in the ecosystem. To estimate the impact of barrage construction on fish assemblages, we evaluated 20 years of monitoring data before and after the construction of the estuary barrage, and evaluated the role of fishways. The barrage construction generated entire changes of fish assemblages. After construction, the number of fish species dropped sharply, and 36 species disappeared. Conversely, 18 species appeared at this site, including eight freshwater species, seven of which were exotic or translocated species. Barrage construction affected freshwater fish more severely than it did estuarine and marine species because of the existence of an estuarine environment below the barrage. We did not detect any evidence of recovery of fish assemblages. A total of 31 species were collected at fishways, and the number of individuals collected at each fishway was positively correlated with the amount of discharge from the estuary barrage, mean daily tide level, and water temperature. Migratory fish using a fishway had obvious occurrence periods. Therefore, the efficiency of fishway use can be increased if an appropriate management plan is prepared and implemented.

Summary The length–weight relationships (LWRs) for 19 freshwater fish species in Upo Wetland, South Korea, were analyzed. Fish samples were collected quarterly using scoop-nets (5 mm mesh), casting nets (7 mm mesh) and a fixed shore net (15 mm mesh) from 2007 to 2014. LWRs data for three species have not yet been listed in FishBase.

The complete mitochondrial genome of Favonigobius gymnauchen was sequenced. The circular mitochondrial genome is 16,480 bp and consists of 13 protein-coding, 2 ribosomal RNAs, and 13 transfer RNA genes (GenBank accession no. MN194589). Results of maximum likelihood analysis showed that this species clustered with other species of the family Gobbidae. This study will contribute to the phylogenetics of genus Favonigobius and the other genera of Gobiidae.

Summary The length-weight relationships (LWRs) for 10 freshwater fish species in catchment area of Busan Metropolitan City, South Korea, were analyzed. Fish samples were collected quarterly using scoop-nets (mesh 5 mm), casting nets (mesh 7 mm) and gill nets (mesh 20, 50 and 70 mm) from 2011 to 2016. LWRs data for seven of these species have not yet been listed in FishBase.

In this study, we examined the ontogenetic changes in prey selection pattern of largemouth bass Micropterus salmoides (Lacepede, 1802) in accordance with habitat type. The stomach contents of largemouth bass were analysed with respect to predator size classes for two different habitats (Nakdong River main channel and the Upo Wetlands tributary) in South Korea, that differed in the diversity of potential prey items. The diversity (H′) of invertebrate diet items in stomach of largemouth bass was found significantly different between the study sites. Small large mouth bass (100 mm in the river and >200 mm in the wet land system preferred fish as their prey. Results demonstrated variations in composition of prey items as influenced by habitat characteristics as well as habitat use type, contributed to the delayed ontogenetic diet shift in the largemouth bass population.

Vitellogenesis is a pivotal reproductive process of the yolk formation in crustaceans. Vitellogenin (VTG) is the precursor of main yolk proteins and synthesized by endogenous estrogens. The intertidal mud crab (Macrophthalmus japonicus) inhabits sediment and is a good indicator for assessing polluted benthic environments. The purpose of this study was to identify potential responses of M. japonicus VTG under environmental stresses caused by chemical pollutants, such as 1, 10, and 30 &micro, g L&minus, 1 concentrations in di(2-ethylhexyl) phthalate (DEHP), bisphenol A (BPA) and irgarol. We characterized the M. japonicus VTG gene and analyzed the transcriptional expression of VTG mRNA in M. japonicus exposed to various chemicals and exposure periods. A phylogenetic analysis revealed that the M. japonicus VTG clustered closely with Eriocheir sinensis (Chinese mitten crab) VTG, in contrast with another clade that included the VTG ortholog of other crabs. The basal level of VTG expression was the highest in the hepatopancreas and ovaries, and tissues. VTG expression significantly increased in the ovaries and hepatopancreas after 24 h exposure to DEHP. Increased responses of VTG transcripts were found in M. japonicus exposed to DEHP and BPA for 96 h, however, VTG expression decreased in both tissues after irgarol exposure. After an exposure of 7 d, VTG expression significantly increased in the ovaries and hepatopancreas for all concentrations of all chemicals. These results suggest that the crustacean embryogenesis and endocrine processes are impaired by the environmental chemical pollutants DEHP, BPA, and irgarol.