181 results on '"Yujie Wu"'
Search Results
2. Adaptive spatiotemporal neural networks through complementary hybridization
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Yujie Wu, Bizhao Shi, Zhong Zheng, Hanle Zheng, Fangwen Yu, Xue Liu, Guojie Luo, and Lei Deng
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Science - Abstract
Abstract Processing spatiotemporal data sources with both high spatial dimension and rich temporal information is a ubiquitous need in machine intelligence. Recurrent neural networks in the machine learning domain and bio-inspired spiking neural networks in the neuromorphic computing domain are two promising candidate models for dealing with spatiotemporal data via extrinsic dynamics and intrinsic dynamics, respectively. Nevertheless, these networks have disparate modeling paradigms, which leads to different performance results, making it hard for them to cover diverse data sources and performance requirements in practice. Constructing a unified modeling framework that can effectively and adaptively process variable spatiotemporal data in different situations remains quite challenging. In this work, we propose hybrid spatiotemporal neural networks created by combining the recurrent neural networks and spiking neural networks under a unified surrogate gradient learning framework and a Hessian-aware neuron selection method. By flexibly tuning the ratio between two types of neurons, the hybrid model demonstrates better adaptive ability in balancing different performance metrics, including accuracy, robustness, and efficiency on several typical benchmarks, and generally outperforms conventional single-paradigm recurrent neural networks and spiking neural networks. Furthermore, we evidence the great potential of the proposed network with a robotic task in varying environments. With our proof of concept, the proposed hybrid model provides a generic modeling route to process spatiotemporal data sources in the open world.
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- 2024
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3. Dynamics of single-nuclei transcriptomic profiling of adipose tissue from diverse anatomical locations during mouse aging process
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Yujie Wu, Ying Sun, Long Chen, Xingyan Tong, Can Liu, Lu Lu, Rui Zhang, Siyuan Wang, Ziyu Chen, Jiaman Zhang, Ziyin Han, Bo Zeng, Mingzhou Li, and Long Jin
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Medicine ,Science - Abstract
Abstract Adipose tissue plays critical roles in an individual’s aging process. In this research, we use single-nucleus RNA sequencing to create highly detailed transcriptional maps of subcutaneous adipose tissue and visceral adipose tissue in young and aged mice. We comprehensively identify the various cell types within the white adipose tissue of mice, our study has elucidated seven distinct cell types within this tissue. Further analyses focus on adipocytes, fibro-adipogenic progenitors, and immune cells, revealing age-related declines in the synthetic metabolic activity of adipocytes, diminished immune regulation, and reduced maturation or proliferation of fibroblasts in undifferentiated adipocytes. We confirm the presence of distinct subpopulations of adipocytes, highlighting decreases in adipogenesis subgroups due to aging. Additionally, we uncover a reduction in immune cell subpopulations, driven by age-associated immune system dysregulation. Furthermore, pseudo-time analyses indicate that Adipocyte1 represents the 'nascent' phase of adipocyte development, while Adipocyte2 represents the 'mature' phase. We use cell–cell interaction to explore the age-dependent complexities of the interactions between FAPs and adipocytes, and observed increased expression of the inflammation-related Retn-Tlr4 interaction in older mice, while the anti-inflammatory Angpt1-Tek interaction was only detected in young mice. These transcriptional profiles serve as a valuable resource for understanding the functional genomics underlying metabolic disorders associated with aging in human adipose tissue.
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- 2024
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4. Direct Identification of O─O Bond Formation Through Three‐Step Oxidation During Water Splitting by Operando Soft X‐ray Absorption Spectroscopy
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Yu‐Cheng Huang, Yujie Wu, Ying‐Rui Lu, Jeng‐Lung Chen, Hong‐Ji Lin, Chien‐Te Chen, Chi‐Liang Chen, Chao Jing, Jing Zhou, Linjuan Zhang, Yanyong Wang, Wu‐Ching Chou, Shuangyin Wang, Zhiwei Hu, and Chung‐Li Dong
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conjugated chromium oxalate Anions [Cr(C2O4)3]3− ,Layered Double Hydroxides ,Operando soft X‐ray Spectroscopy ,Oxygen Evolution Reaction ,Oxyhydroxide ,Science - Abstract
Abstract Anionic redox allows the direct formation of O─O bonds from lattice oxygens and provides higher catalytic in the oxygen evolution reaction (OER) than does the conventional metal ion mechanism. While previous theories have predicted and experiments have suggested the possible O─O bond, it has not yet been directly observed in the OER process. In this study, operando soft X‐ray absorption spectroscopy (sXAS) at the O K‐edge and the operando Raman spectra is performed on layered double CoFe hydroxides (LDHs) after intercalation with [Cr(C2O4)3]3−, and revealed a three‐step oxidation process, staring from Co2+ to Co3+, further to Co4+ (3d6L), and ultimately leading to the formation of O─O bonds and O2 evolution above a threshold voltage (1.4 V). In contrast, a gradual oxidation of Fe is observed in CoFe LDHs. The OER activity exhibits a significant enhancement, with the overpotential decreasing from 300 to 248 mV at 10 mA cm−2, following the intercalation of [Cr(C2O4)3]3− into CoFe LDHs, underscoring a crucial role of anionic redox in facilitating water splitting.
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- 2024
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5. Multiscale micromechanics modeling of viscoelastic natural plant fibers
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Jie Li, Jian Wang, Miao Wang, Jinxin Tie, Xuefeng Gao, Yujie Wu, Jinhua Song, and Chen Xia
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natural plant fibers ,hierarchical structure ,micromechanics and homogenization ,Mori-Tanaka model ,Zakian inversion ,viscoelastic behavior ,Technology - Abstract
Natural plant fibers are hierarchical structures with multi-level microstructures. With advances in composite material science, these fibers have been widely used in various polymer products. Therefore, it is crucial to quantitatively understand the relationship between their microstructures and mechanical behavior. This paper utilizes the Mori-Tanaka micromechanics model, viscoelasticity theory, and Zakian’s inversion method to study the impact of plant fiber microstructure on the viscoelastic behavior of multiscale structures. At the microscopic scale, the macromolecular polymer (matrix) and cellulose (fiber) are first homogenized. The second homogenization involves the cell wall microstructure, and the third homogenization considers the porosity of the cell wall and lumen to predict the effective modulus of fiber bundles. By applying the principle of elastic-viscoelastic correspondence, the viscoelastic mechanical parameters of plant fibers are calculated. The study examines the effects of cellulose crystallinity and lumen porosity on the structural stiffness and viscoelastic properties of fibers, identifying these factors as key influences on the mechanical behavior of plant fibers. Given their significant economic potential, the feasibility of using tobacco plant fibers as bio-based materials is also explored.
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- 2024
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6. Nonuniform and pathway-specific laminar processing of spatial frequencies in the primary visual cortex of primates
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Tian Wang, Weifeng Dai, Yujie Wu, Yang Li, Yi Yang, Yange Zhang, Tingting Zhou, Xiaowen Sun, Gang Wang, Liang Li, Fei Dou, and Dajun Xing
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Science - Abstract
Abstract The neocortex comprises six cortical layers that play a crucial role in information processing; however, it remains unclear whether laminar processing is consistent across all regions within a single cortex. In this study, we demonstrate diverse laminar response patterns in the primary visual cortex (V1) of three male macaque monkeys when exposed to visual stimuli at different spatial frequencies (SFs). These response patterns can be categorized into two groups. One group exhibit suppressed responses in the output layers for all SFs, while the other type shows amplified responses specifically at high SFs. Further analysis suggests that both magnocellular (M) and parvocellular (P) pathways contribute to the suppressive effect through feedforward mechanisms, whereas amplification is specific to local recurrent mechanisms within the parvocellular pathway. These findings highlight the non-uniform distribution of neural mechanisms involved in laminar processing and emphasize how pathway-specific amplification selectively enhances representations of high-SF information in primate V1.
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- 2024
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7. The gut microbiota facilitate their host tolerance to extreme temperatures
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Ziguang Wang, Yujie Wu, Xinxin Li, Xiaowen Ji, and Wei Liu
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Gut microbiota ,Extreme temperatures ,Tolerance ,Insulin pathway ,Carbohydrate metabolism ,Microbiology ,QR1-502 - Abstract
Abstract Background Exposure to extreme cold or heat temperature is one leading cause of weather-associated mortality and morbidity in animals. Emerging studies demonstrate that the microbiota residing in guts act as an integral factor required to modulate host tolerance to cold or heat exposure, but common and unique patterns of animal-temperature associations between cold and heat have not been simultaneously examined. Therefore, we attempted to investigate the roles of gut microbiota in modulating tolerance to cold or heat exposure in mice. Results The results showed that both cold and heat acutely change the body temperature of mice, but mice efficiently maintain their body temperature at conditions of chronic extreme temperatures. Mice adapt to extreme temperatures by adjusting body weight gain, food intake and energy harvest. Fascinatingly, 16 S rRNA sequencing shows that extreme temperatures result in a differential shift in the gut microbiota. Moreover, transplantation of the extreme-temperature microbiota is sufficient to enhance host tolerance to cold and heat, respectively. Metagenomic sequencing shows that the microbiota assists their hosts in resisting extreme temperatures through regulating the host insulin pathway. Conclusions Our findings highlight that the microbiota is a key factor orchestrating the overall energy homeostasis under extreme temperatures, providing an insight into the interaction and coevolution of hosts and gut microbiota.
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- 2024
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8. Alternative Oxidase: From Molecule and Function to Future Inhibitors
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Jiye Li, Shiyun Yang, Yujie Wu, Ruina Wang, Yu Liu, Jiacun Liu, Zi Ye, Renjie Tang, Malcolm Whiteway, Quanzhen Lv, and Lan Yan
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Chemistry ,QD1-999 - Published
- 2024
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9. Hosts manipulate lifestyle switch and pathogenicity heterogeneity of opportunistic pathogens in the single-cell resolution
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Ziguang Wang, Shuai Li, Sheng Zhang, Tianyu Zhang, Yujie Wu, Anqi Liu, Kui Wang, Xiaowen Ji, Haiqun Cao, Yinglao Zhang, Eng King Tan, Yongcheng Wang, Yirong Wang, and Wei Liu
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host-microbe interactions ,bacterial single-cell RNA-seq ,lifestyle switch ,pathogenicity heterogeneity ,Serratia marcescens ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Host-microbe interactions are virtually bidirectional, but how the host affects their microbiome is poorly understood. Here, we report that the host is a critical modulator to regulate the lifestyle switch and pathogenicity heterogeneity of the opportunistic pathogens Serratia marcescens utilizing the Drosophila and bacterium model system. First, we find that Drosophila larvae efficiently outcompete S. marcescens and typically drive a bacterial switch from pathogenicity to commensalism toward the fly. Furthermore, Drosophila larvae reshape the transcriptomic and metabolic profiles of S. marcescens characterized by a lifestyle switch. More importantly, the host alters pathogenicity and heterogeneity of S. marcescens in the single-cell resolution. Finally, we find that larvae-derived AMPs are required to recapitulate the response of S. marcescens to larvae. Altogether, our findings provide an insight into the pivotal roles of the host in harnessing the life history and heterogeneity of symbiotic bacterial cells, advancing knowledge of the reciprocal relationships between the host and pathogen.
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- 2024
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10. Smartphone addiction habit is positively associated with coronary artery disease and its severity in Chinese adults: a case-control study
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Jun Zhu, Sibo Wang, Yujie Wu, Lingfeng Gu, Yao Ma, Yaxin Wang, and Liansheng Wang
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smartphone addiction ,coronary artery disease ,hypertension ,type 2 diabetes mellitus ,sleep quality ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundCoronary artery disease (CAD) has a high incidence and poor prognosis worldwide. It has been confirmed that smartphone addiction (SA) habit can increase the incidence of hypertension and obesity in adolescents. However, the association of SA with CAD and its severity in Chinese adults remains largely unknown.MethodsA total of 700 Chinese adults (aged 18–70 years) including 350 CAD patients and 350 control subjects were enrolled. The Smartphone Addiction Scale Short Version (SAS-SV) was used to measure SA habit, and the Pittsburgh sleep quality index (PSQI) was used to assess sleep quality. Multiple logistic regression was employed to analyze the relationship between SA habit and CAD.ResultsAfter adjusting for age, smoking, hypertension, type 2 diabetes mellitus, and other risk factors, there was a significant association between SA habit and CAD in adults (p 34) and low Gensini score group (≤34), respectively. Compared with low Gensini score group, patients in high Gensini score group were more likely to have SA habit (p = 0.049).ConclusionsThere is a positive association of SA habit with CAD and its severity in Chinese adults.
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- 2024
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11. The impact of altered dietary adenine concentrations on the gut microbiota in Drosophila
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Xianglin Yin, Qing Tong, Jingtao Wang, Jinfeng Wei, Zhenbo Qin, Yujie Wu, Ruidi Zhang, Baosheng Guan, and Hongbin Qiu
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adenine ,gut microbiome ,hyperuricaemia ,metabolic disease ,uric acid ,Microbiology ,QR1-502 - Abstract
The gut microbiota influences host metabolism and health, impacting diseases. Research into how diet affects gut microbiome dynamics in model organisms is crucial but underexplored. Herein, we examined how dietary adenine affects uric acid levels and the gut microbiota over five generations of Drosophila melanogaster. Wild-type W1118 flies consumed diets with various adenine concentrations (GC: 0%, GL: 0.05%, and GH: 0.10%), and their gut microbiota were assessed via Illumina MiSeq sequencing. Adenine intake significantly increased uric acid levels in the GH group > the GC group. Despite no significant differences in the alpha diversity indices, there were significant disparities in the gut microbiota health index (GMHI) and dysbiosis index (MDI) among the groups. Adenine concentrations significantly altered the diversity and composition of the gut microbiota. High adenine intake correlated with increased uric acid levels and microbial population shifts, notably affecting the abundances of Proteobacteria and Firmicutes. The gut microbiota phenotypes included mobile elements, gram-positive bacteria, biofilm-forming bacteria, and gram-negative bacteria. The significantly enriched KEGG pathways included ageing, carbohydrate metabolism, and the immune system. In conclusion, adenine intake increases uric acid levels, alters gut microbiota, and affects KEGG pathways in Drosophila across generations. This study highlights the impact of dietary adenine on uric acid levels and the gut microbiota, providing insights into intergenerational nutritional effects.
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- 2024
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12. The state of health professions students’ self-directed learning ability during online study and the factors that influence it
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Xiaoyue Xu, Ziyi Li, Louisa Mackay, Na Li, Yaheng Zhang, Yujie Wu, and Yang Zhang
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Online study ,Health professions students ,Self-directed learning ability ,Professional identity ,Special aspects of education ,LC8-6691 ,Medicine - Abstract
Abstract Background Universities have widely switched from traditional face-to-face classes to online instruction as a result of the epidemic. Self-directed learning is becoming the new norm for university students’ learning styles. The ability of health professions students to learn independently during online study directly impacts the effectiveness of online medical education. The ability to learn on their own initiative may be affected by health professions students’ professional identities, defined as their positive perceptions, evaluations, emotional experiences, and identity as professionals related to medicine. This study aimed to look into the current status and the factors that influence health professions students’ self-directed learning ability (SDLA) during online study and its relationship with professional identity. Methods This study was conducted from September to November 2022 at a medical school in East China. An online questionnaire was used to collect participants’ status of online learning, self-directed learning ability (SDLA), and professional identity. Results One thousand two hundred ninety-eight health professions students demonstrated intermediate self-directed learning ability during online study. In terms of teacher-student interaction (F = 14.778, P
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- 2024
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13. Temporal dendritic heterogeneity incorporated with spiking neural networks for learning multi-timescale dynamics
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Hanle Zheng, Zhong Zheng, Rui Hu, Bo Xiao, Yujie Wu, Fangwen Yu, Xue Liu, Guoqi Li, and Lei Deng
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Science - Abstract
Abstract It is widely believed the brain-inspired spiking neural networks have the capability of processing temporal information owing to their dynamic attributes. However, how to understand what kind of mechanisms contributing to the learning ability and exploit the rich dynamic properties of spiking neural networks to satisfactorily solve complex temporal computing tasks in practice still remains to be explored. In this article, we identify the importance of capturing the multi-timescale components, based on which a multi-compartment spiking neural model with temporal dendritic heterogeneity, is proposed. The model enables multi-timescale dynamics by automatically learning heterogeneous timing factors on different dendritic branches. Two breakthroughs are made through extensive experiments: the working mechanism of the proposed model is revealed via an elaborated temporal spiking XOR problem to analyze the temporal feature integration at different levels; comprehensive performance benefits of the model over ordinary spiking neural networks are achieved on several temporal computing benchmarks for speech recognition, visual recognition, electroencephalogram signal recognition, and robot place recognition, which shows the best-reported accuracy and model compactness, promising robustness and generalization, and high execution efficiency on neuromorphic hardware. This work moves neuromorphic computing a significant step toward real-world applications by appropriately exploiting biological observations.
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- 2024
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14. The neural origin for asymmetric coding of surface color in the primate visual cortex
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Yujie Wu, Minghui Zhao, Haoyun Deng, Tian Wang, Yumeng Xin, Weifeng Dai, Jiancao Huang, Tingting Zhou, Xiaowen Sun, Ning Liu, and Dajun Xing
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Science - Abstract
Abstract The coding privilege of end-spectral hues (red and blue) in the early visual cortex has been reported in primates. However, the origin of such bias remains unclear. Here, we provide a complete picture of the end-spectral bias in visual system by measuring fMRI signals and spiking activities in macaques. The correlated end-spectral biases between the LGN and V1 suggest a subcortical source for asymmetric coding. Along the ventral pathway from V1 to V4, red bias against green peaked in V1 and then declined, whereas blue bias against yellow showed an increasing trend. The feedforward and recurrent modifications of end-spectral bias were further revealed by dynamic causal modeling analysis. Moreover, we found that the strongest end-spectral bias in V1 was in layer 4C $$\beta$$ β . Our results suggest that end-spectral bias already exists in the LGN and is transmitted to V1 mainly through the parvocellular pathway, then embellished by cortical processing.
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- 2024
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15. Design and Simulation of a High-Responsivity Dielectric Metasurface Si-Based InGaAs Photodetector
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Hengyang Dong, Yujie Wu, Hongbo Zheng, Pandi Chen, Wenhao Deng, Liuhong Ma, Xinyuan Dong, Zhiyong Duan, and Mengke Li
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Si-based optical interconnection ,dielectric metasurface ,Si-based InGaAs photodetector ,high responsivity ,ART epitaxial technology ,Applied optics. Photonics ,TA1501-1820 - Abstract
A Si-based photodetector is the core device of Si-based optical interconnection; its material and performance are the key factors restricting its development. This paper conducts theoretical research on the issues of lattice mismatch between heterogeneous materials and low device responsivity in Si-based InGaAs photodetectors for the 1550 nm optical communication band. The material mismatch issue is addressed through the use of the high-aspect ratio trapping (ART) epitaxial technique, enabling the realization of high-performance Si-based III-V materials. By introducing a dielectric metasurface into the top layer of the structure, the light absorption efficiency is enhanced, realizing broadband optical absorption enhancement for Si-based photodetectors. This paper mainly focuses on designing the optimal parameters of the dielectric metasurface structure based on the finite-difference time-domain (FDTD) Solutions to achieve the performance analysis of a high-responsivity 1550 nm Si-based InGaAs photodetector. The results show that the quantum efficiency of the dielectric metasurface structure is theoretically estimated to be 88.8% and the response rate is 1.11 A/W, which is 2%~16% higher than that of the unetched structure in the whole band. The research results of this paper will provide new ideas for the development of novel, high-performance, and miniaturized Si-based photodetectors and lay a theoretical foundation for Si-based optical interconnection.
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- 2024
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16. The Effect of Short-Term Waterlogging Stress on the Response Mechanism of Photosynthetic Characteristics, Chlorophyll Fluorescence, and Yield Components during the Podding Stage in Peanuts
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Yujie Wu, Qingrong Ma, Zhigao Zhen, Ronghao Chu, and Chengda Hu
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peanut (Arachis hypogaea L.) ,waterlogging disaster ,simulation experiment ,photosynthesis ,chlorophyll fluorescence ,Agriculture - Abstract
In the context of global climate change, the frequency of waterlogging is increasing. Therefore, to elucidate the effects of waterlogging under real precipitation conditions on the physiological characteristics of peanuts and the underlying mechanics and to provide a theoretical basis for timely protective measures, this study involved a waterlogging disaster simulation experiment in the field environment and a waterlogging stress control experiment in the potting environment. It was found that sufficient water had a positive effect on the growth and development of peanuts (Arachis hypogaea L.) during the 3–5 days period at the beginning of waterlogging. However, as the duration of waterlogging increased, excess water inhibited the growth of peanuts, with a stronger inhibitory effect on the development of pods. A comparison of the two different experimental models found that in the potting environment, water circulation was not smooth, and the intensity of waterlogging was higher than in the field environment experiment, resulting in the effect of waterlogging being advanced by one observation stage (2 days) in the potting environment. Furthermore, using a novel fluorescence imaging system, an analysis of variations in the physiological characteristics of leaf sections demonstrated that the chlorophyll fluorescence in the leaves of the peanut plant exhibited a specific pattern in response to waterlogging stress.
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- 2024
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17. Soil Organic Matter and Bulk Density: Driving Factors in the Vegetation-Mediated Restoration of Coastal Saline Lands in North China
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Weiliu Li, Jingsong Li, Yujie Wu, Kai Guo, Xiaohui Feng, and Xiaojing Liu
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soil organic matter ,soil bulk density ,vegetation restoration ,coastal saline land ,Agriculture - Abstract
Coastal saline soils are an important soil resource that, when restored, can enhance arable land and preserve the natural ecology. With the aim of improving the use of coastal saline soils, we conducted a spot survey at Bohai coastal saline land to investigate the differences in soil properties between different vegetation types. The soil physical and chemical properties of various vegetation types, including Aeluropus sinensis, Imperata cylindrica, Tamarix chinensis, Lycium chinense, Hibiscus moscheutos, Helianthus annuus, Gossypium hirsutum, and Zea mays, were examined at two depth layers: 0–20 cm and 20–40 cm, and in two seasons, spring and autumn. The soil properties were compared with bare land as a control. The results indicated that the electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density of soils with vegetation cover were lower than those with bare land. On the other hand, soil pH, organic matter content, mean weight diameter, and saturated hydraulic conductivity were higher. The redundancy analysis results revealed a substantial positive correlation between soil pH, saturated hydraulic conductivity, water content, mean weight diameter, and organic matter content, as well as a significant positive correlation between soil electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density. Soil pH, saturated hydraulic conductivity, water content, mean weight diameter, organic matter content, and soil electrical conductivity, total soil salt content, sodium adsorption ratio, and bulk density were negatively correlated. The results of the structural equation model and variance decomposition showed that soil organic matter and bulk density were the key factors affecting the degree of soil salinization, and compared with their independent effects, their combined effect on soil salinization was greater. This study’s conclusions can provide a point of reference for further research on the mechanisms of soil improvement and desalinization in coastal saline land.
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- 2024
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18. Functional Divergence in the Affinity and Stability of Non-Canonical Cysteines and Non-Canonical Disulfide Bonds: Insights from a VHH and VNAR Study
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Mingce Xu, Zheng Zhao, Penghui Deng, Mengsi Sun, Cookson K. C. Chiu, Yujie Wu, Hao Wang, and Yunchen Bi
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single-domain antibodies ,disulfide bonds ,cysteines ,nanobodies ,intrabodies ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Single-domain antibodies, including variable domains of the heavy chains of heavy chain-only antibodies (VHHs) from camelids and variable domains of immunoglobulin new antigen receptors (VNARs) from cartilaginous fish, show the therapeutic potential of targeting antigens in a cytosol reducing environment. A large proportion of single-domain antibodies contain non-canonical cysteines and corresponding non-canonical disulfide bonds situated on the protein surface, rendering them vulnerable to environmental factors. Research on non-canonical disulfide bonds has been limited, with a focus solely on VHHs and utilizing only cysteine mutations rather than the reducing agent treatment. In this study, we examined an anti-lysozyme VNAR and an anti-BC2-tag VHH, including their non-canonical disulfide bond reduced counterparts and non-canonical cysteine mutants. Both the affinity and stability of the VNARs and VHHs decreased in the non-canonical cysteine mutants, whereas the reduced-state samples exhibited decreased thermal stability, with their affinity remaining almost unchanged regardless of the presence of reducing agents. Molecular dynamics simulations suggested that the decrease in affinity of the mutants resulted from increased flexibility of the CDRs, the disappearance of non-canonical cysteine–antigen interactions, and the perturbation of other antigen-interacting residues caused by mutations. These findings highlight the significance of non-canonical cysteines for the affinity of single-domain antibodies and demonstrate that the mutation of non-canonical cysteines is not equivalent to the disruption of non-canonical disulfide bonds with a reducing agent when assessing the function of non-canonical disulfide bonds.
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- 2024
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19. Longitudinal changes of oxidative stress and PON1 lactonase activity and status in older pregnant women undergoing assisted reproductive technology: a prospective nested case-control study
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Chenyu Jiang, Meng Chen, Yujie Wu, Huai Bai, Xinghui Liu, and Ping Fan
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Advanced maternal age ,Assisted reproductive technology ,Paraoxonase 1 ,Lactonase activity ,Genetic polymorphism ,Oxidative stress ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Background Childbearing in women with advanced maternal age (AMA) has increased the need for artificial reproductive technology (ART). ART and oxidative stress are associated with many pregnancy complications. Paraoxonase (PON) 1 is one of the key components responsible for antioxidative activity in high-density lipoprotein (HDL). This study aimed to investigate the longitudinal changes of oxidative stress and PON1 lactonase activity and status in older women undergoing ART. Methods This prospective nested case-control study included 129 control and 64 ART women. Blood samples were obtained respectively at different stages of pregnancy. PON1 level and lactonase activity were assessed using 7-O-diethylphosphoryl-3-cyano-4-methyl-7-hydroxycoumarin (DEPCyMC) and 5-thiobutyl butyrolactone (TBBL) as a substrate, respectively. A normalized lactonase activity (NLA) was estimated based on the ratio of TBBLase to DEPCyMCase activity. Serum total oxidant status (TOS), total antioxidant capacity (TAC), malondialdehyde (MDA), homocysteine (HCY), PON1 C-108T and Q192R genetic polymorphisms, and metabolic parameters were analyzed. Results Lactonase activity and level of PON1 gradually decreased with pregnancy progression, while glycolipid metabolism parameters and TAC levels increased with pregnancy progression or significantly raised during the 2nd and 3rd trimesters, and NLA of PON1, TOS, OSI, MDA, and HCY significantly increased before delivery in the ART and control groups. Compared with the control women, the ART women had substantially higher or relatively high lactonase activity and NLA of PON1 and TAC during pregnancy; higher triglyceride (TG), total cholesterol, low-density lipoprotein cholesterol, atherogenic index, apolipoprotein (apo) B, and apoB/apoA1 ratio in the 1st trimester; and higher fasting glucose, fasting insulin, homeostatic model assessment of insulin resistance, and TG levels before delivery. No significant differences were found in the frequencies of PON1 C-108T and Q192R genotypes and alleles between the ART and control groups. Conclusions Women with AMA undergoing ART had higher TAC, PON1 lactonase activity, and PON1 NLA than control women, suggesting increased compensatory antioxidant capacity in ART women, thus showing higher sensitivity to oxidative stress-related injury and diseases.
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- 2023
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20. TaMIR397-6A and -6B Homoeologs Encode Active miR397 Contributing to the Regulation of Grain Size in Hexaploid Wheat
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Putong Wang, Yujie Wu, Junhui Zhang, Jiao Si, Xiaoteng Wang, Zhongfa Jiao, Xiaodan Meng, Li Zhang, Fanrong Meng, and Yongchun Li
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microRNA ,grain filling ,target gene ,overexpression ,short tandem target mimic ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Wheat is one of the most important food crops globally, and understanding the regulation of grain size is crucial for wheat breeding to achieve a higher grain yield. MicroRNAs (miRNAs) play vital roles in plant growth and development. However, the miRNA-mediated mechanism underlying grain size regulation remains largely elusive in wheat. Here, we report the characterization and functional validation of a miRNA, TamiR397a, associated with grain size regulation in wheat. The function of three TaMIR397 homoeologs was determined through histochemical β-glucuronidase-dependent assay. MiRNA expression was detected using quantitative reverse transcription polymerase chain reaction (qRT-PCR), and the function of TamiR397a was validated through its transgenic overexpression and repression in wheat. It was found that TaMIR397-6A and TaMIR397-6B encode active TamiR397a. The expression profiling indicated that TamiR397a was differentially expressed in various tissues and gradually up-regulated during grain filling. The inhibition of TamiR397a perturbed grain development, leading to a decrease in grain size and weight. Conversely, the overexpression of TamiR397a resulted in increased grain size and weight by accelerating the grain filling process. Transcriptome analysis revealed that TamiR397a regulates a set of genes involved in hormone response, desiccation tolerance, regulation of cellular senescence, seed dormancy, and seed maturation biological processes, which are important for grain development. Among the down-regulated genes in the grains of the TamiR397a-overexpressing transgenic plants, 11 putative targets of the miRNA were identified. Taken together, our results demonstrate that TamiR397a is a positive regulator of grain size and weight, offering potential targets for breeding wheat with an increased grain yield.
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- 2024
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21. Research on Hull Form Design and Numerical Simulation of Sinkage and Trim for a New Shallow-Water Seismic Survey Vessel
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Ziyi Ye, Shaojuan Su, Yujie Wu, Fangxin Guo, Haibo Liu, and Qixiang Cheng
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shallow-water seismic survey vessel ,shallow-water effect ,sinkage and trim ,hull form design ,Naval architecture. Shipbuilding. Marine engineering ,VM1-989 ,Oceanography ,GC1-1581 - Abstract
When a ship sails in shallow water, it will show different hydrodynamic performance from that in deep water due to the limitations of water depth. The shallow water effect may lead to hull sinkage and trim, increasing the risk of bottoming or collision. In this study, a new design scheme of a shallow-water seismic survey vessel is proposed to solve the problems of traditional seismic survey vessels in shallow-water marine resources exploration and safety. The RANS (the Reynolds-Averaged Navier–Stokes) method combined with the Overset Mesh and DFBI (Dynamic Fluid Body Interaction) method is used for numerical simulation to analyze the influence of ship type, water depth, and speed on ship sinkage and trim, as well as the influence of the shallow-water ship’s attitude on resistance. The results show that with the decrease in water depth and the increase in speed, the pressure distribution around the hull becomes uneven, which leads to the aggravation of the sinkage and trim of the hull. In response to this problem, the shallow-water seismic survey vessel significantly improved the sinkage and trim of the hull in shallow water to ensure its safe navigation. The research also shows that navigation resistance can be effectively reduced by appropriately adjusting the ship’s attitude. Therefore, this study provides a reference for the development of shallow-water ships in the future.
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- 2024
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22. SD-YOLOv8: An Accurate Seriola dumerili Detection Model Based on Improved YOLOv8
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Mingxin Liu, Ruixin Li, Mingxin Hou, Chun Zhang, Jiming Hu, and Yujie Wu
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Seriola dumerili ,attention mechanism ,YOLOv8 ,deformable convolution ,small object detection ,Chemical technology ,TP1-1185 - Abstract
Accurate identification of Seriola dumerili (SD) offers crucial technical support for aquaculture practices and behavioral research of this species. However, the task of discerning S. dumerili from complex underwater settings, fluctuating light conditions, and schools of fish presents a challenge. This paper proposes an intelligent recognition model based on the YOLOv8 network called SD-YOLOv8. By adding a small object detection layer and head, our model has a positive impact on the recognition capabilities for both close and distant instances of S. dumerili, significantly improving them. We construct a convenient S. dumerili dataset and introduce the deformable convolution network v2 (DCNv2) to enhance the information extraction process. Additionally, we employ the bottleneck attention module (BAM) and redesign the spatial pyramid pooling fusion (SPPF) for multidimensional feature extraction and fusion. The Inner-MPDIoU bounding box regression function adjusts the scale factor and evaluates geometric ratios to improve box positioning accuracy. The experimental results show that our SD-YOLOv8 model achieves higher accuracy and average precision, increasing from 89.2% to 93.2% and from 92.2% to 95.7%, respectively. Overall, our model enhances detection accuracy, providing a reliable foundation for the accurate detection of fishes.
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- 2024
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23. Ibrutinib plus fludarabine, cyclophosphamide and rituximab (iFCR) as initial treatment in chronic lymphocytic leukemia/ small lymphocytic leukemia with or without TP53 aberrations: a prospective real-world study in Chinese cohort
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Yi Miao, Yeqin Sha, Yi Xia, Shuchao Qin, Rui Jiang, Luomengjia Dai, Hui Shen, Tonglu Qiu, Wei Wu, Jingyan Qiu, Yilian Yang, Chongyang Ding, Yujie Wu, Lei Fan, Wei Xu, Jianyong Li, and Huayuan Zhu
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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24. Analytical method for detecting outlier evaluators
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Yujie Wu, Sharon Curhan, Bernard Rosner, Gary Curhan, and Molin Wang
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Evaluator ,False discovery rate ,Outlier detection ,Quality control ,Reviewer ,Medicine (General) ,R5-920 - Abstract
Abstract Background Epidemiologic and medical studies often rely on evaluators to obtain measurements of exposures or outcomes for study participants, and valid estimates of associations depends on the quality of data. Even though statistical methods have been proposed to adjust for measurement errors, they often rely on unverifiable assumptions and could lead to biased estimates if those assumptions are violated. Therefore, methods for detecting potential ‘outlier’ evaluators are needed to improve data quality during data collection stage. Methods In this paper, we propose a two-stage algorithm to detect ‘outlier’ evaluators whose evaluation results tend to be higher or lower than their counterparts. In the first stage, evaluators’ effects are obtained by fitting a regression model. In the second stage, hypothesis tests are performed to detect ‘outlier’ evaluators, where we consider both the power of each hypothesis test and the false discovery rate (FDR) among all tests. We conduct an extensive simulation study to evaluate the proposed method, and illustrate the method by detecting potential ‘outlier’ audiologists in the data collection stage for the Audiology Assessment Arm of the Conservation of Hearing Study, an epidemiologic study for examining risk factors of hearing loss in the Nurses’ Health Study II. Results Our simulation study shows that our method not only can detect true ‘outlier’ evaluators, but also is less likely to falsely reject true ‘normal’ evaluators. Conclusions Our two-stage ‘outlier’ detection algorithm is a flexible approach that can effectively detect ‘outlier’ evaluators, and thus data quality can be improved during data collection stage.
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- 2023
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25. CYP2E1 C-1054T and 96-bp I/D genetic variations and risk of gestational diabetes mellitus in chinese women: a case-control study
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Yifu Pu, Qingqing Liu, Kaifeng Hu, Xinghui Liu, Huai Bai, Yujie Wu, Mi Zhou, and Ping Fan
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Gestational diabetes mellitus ,CYP2E1 ,Cytochrome P450 ,Genetic polymorphism ,Xenobiotic metabolism ,Oxidative stress ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Cytochrome P450 2E1 (CYP2E1) plays a key role in the metabolism of xenobiotic and endogenous low-molecular-weight compounds. This study aimed to determine if the genetic variations of 96-bp insertion/deletion (I/D) and C-1054T (rs2031920) in CYP2E1 were associated with the risk of gestational diabetes mellitus (GDM). Methods CYP2E1 polymorphisms were genotyped in a case-control study of 1,134 women with uncomplicated pregnancies and 723 women with GDM. The effects of genotype on the clinical, metabolic, and oxidative stress indices were assessed. Results The CYP2E1 C-1054T variant was associated with an increased risk of GDM based on the genotype, recessive, dominant, and allele genetic models (P
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- 2023
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26. Decision-Making Evaluation and Optimization Strategies for Construction EPC Project Developers Utilizing BIM Technology
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Yujie Wu, Xiaoming He, Tianyi Cui, and Mengze Wu
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
In the context of the advancing construction engineering field in China, there has been a significant increase in the adoption of building information modeling (BIM) technology within engineering–procurement–construction (EPC) projects. This emerging technology is expected to significantly influence the decision-making practices of professionals in the construction and engineering domain. Consequently, there is an urgent need for comprehensive research focused on construction management specifically pertaining to the effectiveness of construction developer management. This study examines seven representative EPC projects where BIM technology was implemented and it considers various factors that have the potential to influence project decision-making while taking into account time and cost considerations. A comprehensive multidimensional evaluation method that combines the analytic hierarchy process (AHP) and the fuzzy comprehensive evaluation method is introduced in this study. The results of this study emphasize that the efficiency enhancement strategies derived from the judgment indicator method demonstrate favorable practical outcomes. This research highlights the importance of a comprehensive evaluation method combining the AHP and the fuzzy comprehensive evaluation method to enhance decision-making efficiency for construction developer management staff.
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- 2024
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27. Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
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Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu, Jin Liu, Bowen Ke, and Cheng Zhou
- Subjects
human ,spinal cord ,single-nucleus RNA sequencing ,spatial transcriptomics ,neuronal clusters ,DRG ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Despite the recognized importance of the spinal cord in sensory processing, motor behaviors, and neural diseases, the underlying organization of neuronal clusters and their spatial location remain elusive. Recently, several studies have attempted to define the neuronal types and functional heterogeneity in the spinal cord using single-cell or single-nucleus RNA sequencing in animal models or developing humans. However, molecular evidence of cellular heterogeneity in the adult human spinal cord is limited. Here, we classified spinal cord neurons into 21 subclusters and determined their distribution from nine human donors using single-nucleus RNA sequencing and spatial transcriptomics. Moreover, we compared the human findings with previously published single-nucleus data of the adult mouse spinal cord, which revealed an overall similarity in the neuronal composition of the spinal cord between the two species while simultaneously highlighting some degree of heterogeneity. Additionally, we examined the sex differences in the spinal neuronal subclusters. Several genes, such as SCN10A and HCN1, showed sex differences in motor neurons. Finally, we classified human dorsal root ganglia (DRG) neurons using spatial transcriptomics and explored the putative interactions between DRG and spinal cord neuronal subclusters. In summary, these results illustrate the complexity and diversity of spinal neurons in humans and provide an important resource for future research to explore the molecular mechanisms underlying spinal cord physiology and diseases.
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- 2024
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28. A simplified prognostic score for T-cell large granular lymphocyte leukaemia
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Hailing Liu, Jingjing Guo, Lei Cao, Huayuan Zhu, Yi Miao, Xinyi Du, Yujie Wu, Wei Xu, Jianyong Li, and Lei Fan
- Subjects
Leukaemia ,lymphoproliferative disorders ,decision tree ,prognosis ,survival ,Medicine - Abstract
AbstractBackground T-cell large granular lymphocyte leukaemia (T-LGLL) generally has a favourable prognosis, but a small proportion of patients are facing a relatively short survival time. This study aimed to identify clinical factors associated with survival in patients with T-LGLL and develop a predictive model for guiding therapeutic decision-making.Materials and Methods We conducted a retrospective study on 120 patients with T-LGLL. Lasso regression was performed for feature selection followed by univariate and multivariate Cox regression analysis. A decision tree algorithm was employed to construct a model for predicting overall survival (OS) in T-LGLL.Results The median age of diagnosis for the entire cohort was 59 years, and 76.7% of patients reported disease-related symptoms. After a median follow-up of 75 months, the median OS was not reached. The 5-year OS rate was 82.2% and the 10-year OS rate was 63.8%. Multivariate analysis revealed that an Eastern Cooperative Oncology Group performance status over two and a platelet count below 100 × 109/L were independently associated with worse OS, leading to the development of a simplified decision tree model. The model’s performance was adequate when internally validated. The median OS of the high- and intermediate-risk- risk groups was 43 and 100 months respectively, whereas the median OS of the low-risk group was not reached. Furthermore, we found that immunosuppressive agent-based conventional treatment was unsatisfactory for our high-risk patients.Conclusions Our model is an easily applicable clinical scoring system for predicting OS in patients with T-LGLL. However, external validation is essential before implementing it widely.
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- 2023
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29. Effects of Different Intervertebral Space Heights on Nerve Root Tension during Posterior Lumbar Interbody Fusion
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Yujie Wu, Tong Zhu, and Zhiyi Fu
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Intervertebral Space Height ,Nerve Root ,Posterior Lumbar Interbody Fusion ,Tension ,Orthopedic surgery ,RD701-811 - Abstract
Objective There is no effective standard method to evaluate whether the nerve root tension is restored during lumbar decompression surgery, which is an important indicator for the recovery of nerve function. This study aimed to investigate the feasibility of intraoperative nerve root tension measurement and to confirm the correlation between nerve root tension and intervertebral space height. Methods A total of 54 consecutive patients (mean age, 54.3 years; range, 25–68 years) received posterior lumbar interbody fusion (PLIF) for lumbar disc herniation (LDH) with lumbar spinal stenosis and instability. The 110%, 120%, 130%, 140% height values of each lesion were calculated based on preoperative measurements of the intervertebral space height. The heights were intraoperatively expanded after the intervertebral disc was removed using the interbody fusion cage model. The tension value of nerve root was measured by pulling the nerve root for 5 mm with a self‐made measuring device. The nerve root tension value was measured before decompression, after discectomy at 100%, 110%, 120%, 130%, and 140% of the height of each intervertebral space, and after placement of the cage during intraoperative nerve root tension monitoring. Results The nerve root tension values at 100%, 110%, 120%, and 130% heights were significantly lower than those before decompression, and there was no statistical significance among the four groups. The nerve root tension value was significantly higher at 140% height and was statistically significant compared with that of 130% height. The nerve root tension value after cage placement was significantly lower than that before decompression (1.32 ± 0.22 N vs. 0.61 ± 0.17 N, p
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- 2023
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30. Enhanced Cathode Performance in Pr0.5Sr0.5FeO3−δ of Perovskite Catalytic Materials via Doping with VB Subgroup Elements (V, Nb, and Ta)
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Hongfei Chen, Zhe Lü, and Yujie Wu
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perovskite ,stability ,cathode catalyst ,oxygen adsorption ,impedance ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
Perovskite-style materials are cathode systems known for their stability in solid oxide fuel cells (SOFCs). Pr0.5Sr0.5FeO3−δ (PSF) exhibits excellent electrode performance in perovskite cathode systems at high temperatures. Via VB subgroup metals (V, Nb, and Ta) modifying the B-site, the oxidation and spin states of iron elements can be adjusted, thereby ultimately adjusting the cathode’s physicochemical properties. Theoretical predictions indicate that PSF has poor stability, but the relative arrangement of the three elements on the B-site can significantly improve this material’s properties. The modification of Nb has a large effect on the stability of PSF cathode materials, reaching a level of −2.746 eV. The surface structure of PSF becomes slightly more stable with an increase in the percentage of oxygen vacancy structures, but the structural instability persists. Furthermore, the differential charge density distribution and adsorption state density of the three modified cathode materials validate our adsorption energy prediction results. The initial and final states of the VB subgroup metal-doped PSF indicate that PSFN is more likely to complete the cathode surface adsorption reaction. Interestingly, XRD and EDX characterization are performed on the synthesized pure and Nb-doped PSF material, which show the orthorhombic crystal system of the composite theoretical model structure and subsequent experimental components. Although PSF exhibits strong catalytic activity, it is highly prone to decomposition and instability at high temperatures. Furthermore, PSFN, with the introduction of Nb, shows greater stability and can maintain its activity for the ORR. EIS testing clearly indicates that Nb most significantly improves the cathode. The consistency between the theoretical predictions and experimental validations indicates that Nb-doped PSF is a stable and highly active cathode electrode material with excellent catalytic activity.
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- 2024
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31. The Selective Removal of Bisphenol A Using a Magnetic Adsorbent Fused with Bisphenol A-Binding Peptides
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Yue Xu, Yujie Wu, Bharat Bhargawa, Soon Ho Hong, and Ik-Keun Yoo
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bisphenol A ,magnetic bead ,adsorption ,peptide ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
The potential of bisphenol A (BPA)-binding peptides fused to magnetic beads is demonstrated as novel adsorbents that are reusable and highly selective for BPA removal from aqueous environments, in which various interfering substances coexist. Magnetic beads harboring peptides (peptide beads) showed a higher BPA removal capacity (8.6 mg/g) than that of bare beads without peptides (2.0 mg/g). The BPA adsorption capacity of peptide beads increased with the number of peptides fused onto the beads, where monomeric, dimeric, or trimeric repeats of a BPA-binding peptide were fused to magnetic beads. The BPA-adsorbing beads were regenerated using a methanol–acetic acid mixture, and after six regeneration cycles, the adsorption capacity remained above 87% of its initial capacity. The selective removal of BPA was confirmed in the presence of BPA analogs with high structural similarity (bisphenol F and bisphenol S) or in synthetic wastewater. The present work is a pioneering study that investigates the selective affinity of peptides to remove specific organics with high selectivity from complex environmental matrices.
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- 2024
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32. Traditional use, phytochemistry and pharmacology of Viticis Fructus
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Xiangqing Meng, Hongrui Wang, Zhixuan Kuang, Yujie Wu, Xiaohui Su, Jinyi Wang, Ling Li, Chang Liu, and Min Jia
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Viticis fructus ,Traditional applications ,Anti-allergic ,Anti-cancer ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Ethnopharmacological relevance: Viticis Fructus (called Manjingzi in China) is the dried ripe fruits of the plant species Vitex trifolia subsp. litoralis Steenis and Vitex trifolia L. in the family Lamiaceae. Viticis Fructus has been used as a traditional Chinese medicine for thousands of years to treat illness such as colds, headache, vertigo, anesthesia, and hyperkinesias. More chemical constituents and medicinal effects have been discovered in Viticis Fructus with the development of modern technology.The aim of the review: This review aims to analyze the research progress of Viticis Fructus from the aspects of botany, ethnopharmacology, phytochemistry, and pharmacological activity, as well as to provide an outlook on the research and use prospects of Viticis Fructus. Material and methods: A comprehensive literature search using online databases such Science Direct, CNKI, Wiley online library, Spring Link, Web of Science, PubMed, Wanfang Data and SCI-Finder. In addition, information was obtained from local and foreign books on ethnobotany and ethnomedicine. Results: The application of Viticis Fructus as a medicine can be traced back to around 480 AD. So far, more than 190 compounds have been isolated from Viticis Fructus, including flavonoids, sterols, cyclic enol ether terpenoids, and diterpenoids. Modern pharmacological studies have shown that the extracts of Viticis Fructus have various pharmacological effects, such as anti-allergic, antioxidant, anti-inflammatory, anti-cancer, and anti-bacterial effects. Conclusion: As a widely used traditional medicine, Viticis Fructus is rich in chemical compositions and has an obvious biological activity. However, the application and pharmacological activity of Viticis Fructus have not been scientifically evaluated or convincing due to poor methodology, unclear results and lack of clinical data. Systematic and comprehensive research evaluations are needed to verify its pharmaceutical activity, clinical therapeutic efficacy and safety. As an important herbal medicine, it should be further explored to facilitate the development of new medicines and treatments for a variety of diseases.
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- 2023
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33. Myeloperoxidase G-463A and CYBA C242T genetic variants in gestational diabetes mellitus
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Chenyu Jiang, Mi Zhou, Huai Bai, Meng Chen, Chunyi Yang, Kaifeng Hu, Yujie Wu, Qingqing Liu, Yangyu Zhao, Xinghui Liu, and Ping Fan
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gestational diabetes mellitus ,cyba ,myeloperoxidase ,genetic polymorphism ,oxidative stress ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Physiology ,QP1-981 - Abstract
Oxidative stress plays an important role in the pathophysiology of gestational diabetes mellitus (GDM). We investigated the relationship between NADPH oxidase p22phox subunit (CYBA) C242T (rs4673) and myeloperoxidase (MPO) G-463A (rs2333227) genetic variants and GDM in 719 patients with GDM and 1205 control women. Clinical, metabolic, and oxidative stress parameters were analyzed. We found that frequencies of the A allele (15.6% vs 12.3%) and GA + AA genotype (28.5% vs 23.2%) of the MPO G-463A variation were significantly higher in patients with GDM than in the control women (OR = 1.318, 95% CI: 1.068–1.625, P = 0.010 for the dominant model; OR = 1.999, 95% CI: 1.040–3.843, P = 0.034 for the recessive model; OR = 1.320, 95% CI: 1.095–1.591, P = 0.004 for the allele model). Genotype GA + AA remained a significant predictor of GDM in a logistic regression model including age and BMI at delivery (OR = 1.282, 95% CI: 1.037‒1.583, P = 0.021). Furthermore, the ‒463A allele was associated with higher TG and the 242T allele was related to higher pre-pregnancy BMI and oxidative stress index in all subjects (P < 0.05). The 242T allele was also associated with higher homeostatic model assessment of insulin resistance but lower serum total antioxidant capacity in patients with GDM (P < 0.05). We conclude that the MPO G-463A, but not the CYBA C242T, genetic variation is associated with an increased risk of GDM in Chinese women. These two genetic polymorphisms may be linked to obesity, dyslipidemia, insulin resistance, and oxidative stress.
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- 2023
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34. Hypothermia evoked by stimulation of medial preoptic nucleus protects the brain in a mouse model of ischaemia
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Shuai Zhang, Xinpei Zhang, Haolin Zhong, Xuanyi Li, Yujie Wu, Jun Ju, Bo Liu, Zhenyu Zhang, Hai Yan, Yizheng Wang, Kun Song, and Sheng-Tao Hou
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Science - Abstract
Developing brain-protective hypothermia is a medical challenge. Here, the authors show that deep brain stimulation of a particular brain area is a new way to trigger the body into a hibernation-like state with reduced body temperature and brain protection in a mouse model of stroke.
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- 2022
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35. Supercritical carbon dioxide assisted impregnation and graft of polyamide acid into aramid fiber for formation of polar interface
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Yang Li, Gaoyi Xie, Rong Li, Yujie Wu, Changqin Chen, and Zhu Luo
- Subjects
Aramid fiber ,Polyamide acid ,Graft reaction ,Supercritical carbon dioxide ,Interfacial adhesion ,Mining engineering. Metallurgy ,TN1-997 - Abstract
Contrapose the high inertness of para-aramid fiber (AF) with high strength modulus, surface modification in a green and effective way is one of the main challenges currently faced by fiber reinforced composites engineers. In this study, AF was treated by a two-step process combining hot air treatment (250 °C, 1 h) and graft reaction of polyamide acid (PAA) assisted with supercritical carbon dioxide (scCO2). The ester group displayed on the fiber surface suggested the successful graft reaction between AF and PAA. Additionally, the auxiliary effect of scCO2 increases the surface roughness, resulting in a more uniform grafted layer on the modified fiber surface. Specifically, in the process of graft modification of AF with 5% PAA assisted by scCO2, the thickness of the grafted layer was about 100 nm. Meanwhile, a 50.15% increment of the interfacial shear strength indicated an obvious enhancements of surface adhesion. This study provides a feasible method for interfacial modification of AF, and further widens the application of scCO2 as an auxiliary process in the surface modification of AF.
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- 2022
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36. V1-bypassing suppression leads to direction-specific microsaccade modulation in visual coding and perception
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Yujie Wu, Tian Wang, Tingting Zhou, Yang Li, Yi Yang, Weifeng Dai, Yange Zhang, Chuanliang Han, and Dajun Xing
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Science - Abstract
How microsaccades modulate visual coding and perception remains incompletely understood. Here, the authors identify an emerging suppression specific to microsaccade directions that alters responses in macaque V2 and impacts perceptual decisions.
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- 2022
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37. The background assimilation effect: Facial emotional perception is affected by surrounding stimuli
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Yujie Wu and Haojiang Ying
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Psychology ,BF1-990 - Abstract
The perception of facial emotion is not only determined by the physical features of the face itself but also be influenced by the emotional information of the background or surrounding information. However, the details of such effect are not fully understood. Here, the authors tested the perceived emotion of a target face surrounded by stimuli with different levels of emotional valence. In Experiment 1, four types of objects were divided into three groups (negative, unpleasant flowers and unpleasant animals; mildly negative (neutral), houses; positive, pleasant flowers). In Experiment 2, three groups of surrounding faces with different social–emotional valence (negative, neutral, and positive) were formed with the memory of affective personal knowledge. The data from two experiments showed that the perception of facial emotion can be influenced and modulated by the emotional valence of the surrounding stimuli, which can be explained by assimilation: the positive stimuli increased the valence of a target face, while the negative stimuli comparatively decreased it. Furthermore, the neutral stimuli also increased the valence of the target, which could be explained by the social positive effect. Therefore, the process of assimilation is likely to be a high-level emotional cognition rather than a low-level visual perception. The results of this study may help us better understand face perception in realistic scenarios.
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- 2023
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38. Silk fibroin-based flexible pressure sensors: processing and application
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Muhan Chen, Junhong Liu, Yidi Hu, Yujie Wu, Chun-Yan Tang, Kai Ke, and Wei Yang
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silk fibroin ,flexible pressure sensor ,piezoelectric ,biodegradable ,healthcare ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
With the advent of the internet of things and artificial intelligence, flexible and portable pressure sensors have shown great application potential in human-computer interaction, personalized medicine and other fields. By comparison with traditional inorganic materials, flexible polymeric materials conformable to the human body are more suitable for the fabrication of wearable pressure sensors. Given the consumption of a huge amount of flexible wearable electronics in near future, it is necessary to turn their attention to biodegradable polymers for the fabrication of flexible pressure sensors toward the development requirement of green and sustainable electronics. In this paper, the structure and properties of silk fibroin (SF) are introduced, and the source and research progress of the piezoelectric properties of SF are systematically discussed. In addition, this paper summarizes the advance in the studies on SF-based capacitive, resistive, triboelectric, and piezoelectric sensors reported in recent years, and focuses on their fabrication methods and applications. Finally, this paper also puts forward the future development trend of high-efficiency fabrication and corresponding application of SF-based piezoelectric sensors. It offers new insights into the design and fabrication of green and biodegradable bioelectronics for in vitro and in vivo sensing applications.
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- 2024
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39. The Advancement and Prospects of the Tree Trunk Injection Technique in the Prevention and Control of Diseases and Pests
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Qingqing Shang, Hongcai Lu, Mengdi Yang, Yujie Wu, and Qing Chen
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crop protection ,tree trunk injection ,pesticide application ,Agriculture (General) ,S1-972 - Abstract
Traditional spraying of pesticides causes significant drift losses, and the residues of pesticides can also affect non-targeted organisms in the environment. Tree injection technology is a precise and targeted pesticide delivery method used in the prevention and treatment of tree and fruit tree pest infestations. It uses the tree’s xylem to transport the injected pesticides throughout the entire plant, reducing pesticide exposure in an open environment. This review summarizes the basic principles and development process of tree injection technology, compares its advantages with other application techniques, describes the development of injection equipment and key information to be aware of, and proposes suggestions for future research directions in injection application techniques.
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- 2024
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40. A framework for the general design and computation of hybrid neural networks
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Rong Zhao, Zheyu Yang, Hao Zheng, Yujie Wu, Faqiang Liu, Zhenzhi Wu, Lukai Li, Feng Chen, Seng Song, Jun Zhu, Wenli Zhang, Haoyu Huang, Mingkun Xu, Kaifeng Sheng, Qianbo Yin, Jing Pei, Guoqi Li, Youhui Zhang, Mingguo Zhao, and Luping Shi
- Subjects
Science - Abstract
Hybrid neural networks combine advantages of spiking and artificial neural networks in the context of computing and biological motivation. The authors propose a design framework with hybrid units for improved flexibility and efficiency of hybrid neural networks, and modulation of hybrid information flows.
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- 2022
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41. Identification and characterization of IgNAR and VNAR repertoire from the ocellate spot skate (Okamejei kenojei)
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Jianqing Wen, Jinyu Gong, Pengwei Li, Penghui Deng, Mengsi Sun, Yujie Wu, Chenxi Tian, Hao Wang, and Yunchen Bi
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IgNAR ,VNAR ,skate ,VNAR structure ,antibody diversity ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Elasmobranchs are crucial for comparative studies of evolution, as they belong to the most ancient vertebrate lineages that survived numerous extinction events and persist until today. The immunoglobulin new antigen receptor (IgNAR) found in sharks and heavy-chain-only antibody (HCAb) found in camelidae are products of convergent evolution. Although it was previously believed that IgNAR emerged 220 million years ago, before the divergence of sharks and skates, there is limited evidence to support this. In this study, we provide data supporting the existence of IgNAR in the ocellate spot skate (Okamejei kenojei) mononuclear cell transcriptome and peripheral blood serum. Additionally, we characterize the germline gene configuration of the ocellate spot skate IgNAR V domain. The ocellate spot skate IgNAR structure prediction and VNAR crystal structure exhibit high similarity to their shark counterparts. These data strongly suggest that IgNAR in both sharks and skates share a common ancestor. Sequencing of the ocellate spot skate VNAR repertoire provided crucial data for further understanding of the IgNAR generation. Notably, we discovered that approximately 99% of the ocellate spot skate VNARs belonged to type IV. This represents an exceptionally high proportion of type IV within the VNAR repertoire, which has not been documented in previously studied elasmobranchs. This unique characteristic of the ocellate spot skate VNAR adds essential structural diversity to the naïve VNAR library from elasmobranchs and could potentially benefit the development of pharmaceutical drugs.
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- 2023
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42. Abnormal dynamic functional connectivity of thalamic subregions in patients with first-episode, drug-naïve major depressive disorder
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Yanting Zheng, Yujie Wu, Yujie Liu, Danian Li, Xinyu Liang, Yaoping Chen, Hanyue Zhang, Yan Guo, Ruoxi Lu, Jinhui Wang, and Shijun Qiu
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major depressive disorder (MDD) ,dynamic functional connectivity ,thalamic subregion ,childhood trauma questionnaires ,magnetic resonance imaging (MRI) ,Psychiatry ,RC435-571 - Abstract
BackgroundRecent studies have shown that major depressive disorder (MDD) is associated with altered intrinsic functional connectivity (FC) of the thalamus; however, investigations of these alterations at a finer time scale and the level of thalamic subregions are still lacking.MethodsWe collected resting-state functional MRI data from 100 treatment-naïve, first-episode MDD patients and 99 age-, gender- and education-matched healthy controls (HCs). Seed-based whole-brain sliding window-based dFC analyses were performed for 16 thalamic subregions. Between-group differences in the mean and variance of dFC were determined using threshold-free cluster enhancement algorithm. For significant alterations, there relationships with clinical and neuropsychological variables were further examined via bivariate and multivariate correlation analyses.ResultsOf all thalamic subregions, only the left sensory thalamus (Stha) showed altered variance of dFC in the patients characterized by increases with the left inferior parietal lobule, left superior frontal gyrus, left inferior temporal gyrus, and left precuneus, and decreases with multiple frontal, temporal, parietal, and subcortical regions. These alterations accounted for, to a great extent, clinical, and neuropsychological characteristics of the patients as revealed by the multivariate correlation analysis. In addition, the bivariate correlation analysis revealed a positive correlation between the variance of dFC between the left Stha and right inferior temporal gurus/fusiform and childhood trauma questionnaires scores (r = 0.562, P < 0.001).ConclusionThese findings suggest that the left Stha is the most vulnerable thalamic subregion to MDD, whose dFC alterations may serve as potential biomarkers for the diagnosis of the disease.
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- 2023
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43. Opinions on power grid infrastructure planning with investment risks
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Kun Sheng, Chelun Xie, Jian Sha, Zhuo Zeng, Yuyou Liu, Chuanli Lei, Liang Chen, and Yujie Wu
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deep learning ,duration prediction ,feature extraction ,investment risk ,power grid planning ,General Works - Published
- 2023
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44. Quantitative Evaluation of Wavelet Analysis Method for Turbulent Flux Calculation of Non‐Stationary Series
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Yubin Li, Yujie Wu, Jie Tang, Ping Zhu, Zhiqiu Gao, and Yuanjian Yang
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non‐stationary turbulence ,eddy covariance ,wavelet analysis ,Mexican hat wavelet ,Morlet wavelet ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Abstract This study evaluates the uncertainties of turbulent flux calculation using eddy covariance (EC) and wavelet analysis (WA) methods. First, a non‐stationary data set is concocted by adding periodic waves and random perturbations which mimic the large eddies, turbulent intermittency, and asymmetry into an observational stationary data set, and the theoretical “true” fluxes are used to quantitatively evaluate the accuracy of these methods. Results show that EC and Morlet‐wavelet generate biases ranging 50%–100% of the “true” values at different non‐stationarity grades, whereas the Mexican hat (Mexhat) wavelet has a bias of about half of them. Furthermore, there is a high correlation of the Mexhat‐derived fluxes to the benchmark values, the regression slopes of the values of these two can be improved to almost 1 by adding a correction coefficient. The results suggest the potential of using the Mexhat‐wavelet method to calculate turbulent fluxes with high accuracy under non‐stationary conditions.
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- 2023
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45. Research Progress on Preparation and Application of Hyaluronic Acid
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Fangyun LU, Yujie WU, Jin HUANG, Xinxiao ZHANG, Daoying WANG, Ye ZOU, and Weimin XU
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hyaluronic acid ,physiological function ,preparation ,separation and purification ,application ,Food processing and manufacture ,TP368-456 - Abstract
Hyaluronic acid is a naturally occurring biopolymer possessing numerous functions within the body including wound repair, cell migration, and cell signaling. Due to its unique physical and chemical properties, it is widely used in health care products, cosmetics, and medicine.In 2021, hyaluronic acid is approved as a new resource food raw material in China, which has attracted widespread attention. Understanding its preparation, separation and purification methods is necessary to promote its industrial development.This article summarizes the physiological functions, preparation methods and preparation trends of HA from different sources, the effect of separation and purification method on HA purity, the application fields of hyaluronic acid, aiming to provide ideas for the development and comprehensive utilization of hyaluronic acid.
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- 2022
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46. Diversity and Distribution Characteristics of Culturable Bacteria in Burqin Glacier No. 18, Altay Mountains, China
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Mao Tian, Puchao Jia, Yujie Wu, Xue Yu, Shiyu Wu, Ling Yang, Binglin Zhang, Feiteng Wang, Guangxiu Liu, Tuo Chen, and Wei Zhang
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Burqin glacier No. 18 ,culturable bacteria ,diversity ,potential new species ,pigmented bacteria ,Biology (General) ,QH301-705.5 - Abstract
Ecosystems away from human disturbance provide an ideal paradigm for microbial ecology research. The Burqin glacier No. 18 in the Chinese Altay Mountains is such an ecosystem; however, there are no prior studies on the microbiology in the area. Here, we isolated 902 bacterial strains on the Burqin glacier No. 18 to determine the diversity and distribution characteristics of microorganisms. Isolated strains belonged to six phyla (in the order of dominance: Proteobacteria, Actinobacteria, Bacteroidetes, Cyanobacteria, Firmicutes, and Deinococcus-Thermus) and 90 genera. Our results also demonstrated the presence of a high proportion of potential new species (43%) in the Burqin glacier No. 18, and 67% of the potential new species were isolated at 25 °C. Species diversity varied among habitats, with the lowest diversity in surface ice and the highest diversity in the soil farthest from the glacier terminus. The pigmented colonies made up 52.7% of all isolates, with yellow-colored colonies being the most abundant (18.8%). This study indicates that the Burqin glacier No. 18 hosts rich bacterial strain diversity, and may represent a significant potential source of new functional and pigmented bacteria for the development of critical pharmaceuticals.
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- 2023
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47. In vitro evaluation of the inhibition potential of echinacoside on human cytochrome P450 isozymes
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Yujie Wu, Aiqing Qiao, Shu Lin, and Lijia Chen
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CYP1A2 ,CYP2E1 ,CYP3A4 ,CYP2C19 ,Herb-drug interaction ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background Echinacoside (ECH) possesses a wide range of biological activity. This present study analyzes the effect of ECH on cytochrome P450 isozymes (CYPs) activities of human liver microsomes. Methods The effect of ECH on CYPs enzyme activities were studied using the enzyme-selective substrates phenacetin (1A2), chlorzoxazone (2E1), S-mephenytoin (2C19), testosterone (3A4), coumarin (2A6), diclofenac (2C9), paclitaxel (2C8), and dextromethorphan (2D6). The IC50 values for CYP1A2, CYP2E1, CYP2C19, and CYP3A4 isoforms were examined to express the strength of inhibition. Further, the inhibition of CYPs was checked for time-dependent or not, and then fitted with competitive or non-competitive inhibition models. The corresponding parameters were also obtained. Results ECH caused inhibitions on CYP1A2, CYP2E1, CYP2C19 and CYP3A4 enzyme activities in HLMs with IC50 of 21.23, 19.15, 8.70 and 55.42 μM, respectively. The obtained results showed that the inhibition of ECH on CYP3A4 was time-dependent with the KI/K inact value of 6.63/0.066 min− 1·μM− 1. Moreover, ECH inhibited the activity of CYP1A2 and CYP2E1 via non-competitive manners (K i = 10.90 μM and K i = 14.40 μM, respectively), while ECH attenuated the CYP2C19 activity via a competitive manner (K i = 4.41 μM). Conclusions The results of this study indicate that ECH inhibits CYP1A2, CYP2E1, CYP2C19 and CYP3A4 activities in vitro. In vivo and clinical studies are warranted to verify the relevance of these interactions.
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- 2022
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48. BCL-2 expression promotes immunosuppression in chronic lymphocytic leukemia by enhancing regulatory T cell differentiation and cytotoxic T cell exhaustion
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Lu Liu, Xianfeng Cheng, Hui Yang, Senlin Lian, Yuegen Jiang, Jinhua Liang, Xiao Chen, Suo Mo, Yu Shi, Sishu Zhao, Jianyong Li, Runqiu Jiang, Dong-Hua Yang, and Yujie Wu
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Chronic lymphocytic leukemia ,T cells ,BCL-2 ,Single-cell RNA sequencing ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Chronic lymphocytic leukemia (CLL) results in increased susceptibility to infections. T cell dysfunction is not associated with CLL in all patients; therefore, it is important to identify CLL patients with T cell defects. The role of B-cell lymphoma-2 (BCL-2) in CLL has been explored; however, few studies have examined its role in T cells in CLL patients. Herein, we have investigated the regulatory role of BCL-2 in T cells in the CLL tumor microenvironment. Methods The expression of BCL-2 in T cells was evaluated using flow cytometry. The regulatory roles of BCL-2 were investigated using single-cell RNA sequencing (scRNA-seq) and verified using multi-parameter flow cytometry on CD4 and CD8 T cells. The clinical features of BCL-2 expression in T cells in CLL were also explored. Results We found a significant increase in BCL-2 expression in the T cells of CLL patients (n = 266). Single cell RNA sequencing (scRNA-seq) indicated that BCL-2+CD4+ T cells had the gene signature of increased regulatory T cells (Treg); BCL-2+CD8+ T cells showed the gene signature of exhausted cytotoxic T lymphocytes (CTL); and increased expression of BCL-2 was associated with T cell activation and cellular adhesion. The results from scRNA-seq were verified in peripheral T cells from 70 patients with CLL, wherein BCL-2+CD4+ T cells were enriched with Tregs and had higher expression of interleukin-10 and transforming growth factor-β than BCL-2−CD4+ T cells. BCL-2 expression in CD8+T cells was associated with exhausted cells (PD-1+Tim-3+) and weak expression of granzyme B and perforin. T cell–associated cytokine profiling revealed a negative association between BCL-2+ T cells and T cell activation. Decreased frequencies and recovery functions of BCL-2+T cells were observed in CLL patients in complete remission after treatment with venetoclax. Conclusion BCL-2 expression in the T cells of CLL patients is associated with immunosuppression via promotion of Treg abundance and CTL exhaustion.
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- 2022
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49. Brain-inspired global-local learning incorporated with neuromorphic computing
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Yujie Wu, Rong Zhao, Jun Zhu, Feng Chen, Mingkun Xu, Guoqi Li, Sen Song, Lei Deng, Guanrui Wang, Hao Zheng, Songchen Ma, Jing Pei, Youhui Zhang, Mingguo Zhao, and Luping Shi
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Science - Abstract
Global and local learning represent two distinct approaches to artificial intelligence. In this manuscript, Wu et al present a hybrid learning strategy, drawing from elements of both approaches, and implement it on a co-designed neuromorphic platform.
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- 2022
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50. Coding strategy for surface luminance switches in the primary visual cortex of the awake monkey
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Yi Yang, Tian Wang, Yang Li, Weifeng Dai, Guanzhong Yang, Chuanliang Han, Yujie Wu, and Dajun Xing
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Science - Abstract
How brightness is encoded in the visual cortex remains incompletely understood. By recording from macaque V1, the authors revealed a switch from surface to edge encoding that is mediated by widespread inhibition in the output layers of the cortex.
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- 2022
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