32 results on '"Wild, David L"'
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2. Exploiting molecular dynamics in Nested Sampling simulations of small peptides
3. Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis
4. Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000
5. Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis
6. High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation
7. An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching
8. KMD: An Open-Source Port of the ArrayExpress Microarray Database
9. A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves
10. Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure
11. Bayesian correlated clustering to integrate multiple datasets
12. Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
13. Biomarker discovery in microarray gene expression data with Gaussian processes
14. A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
15. Expectations from Structural Genomics Revisited: An Analysis of Structural Genomics Targets
16. Time‐series transcriptomics reveals a BBX32‐directed control of acclimation to high light in mature Arabidopsis leaves.
17. Modeling T-cell activation using gene expression profiling and state-space models
18. Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
19. The dynamic architecture of the metabolic switch in Streptomyces coelicolor
20. R/BHC: fast Bayesian hierarchical clustering for microarray data
21. Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs.
22. MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing.
23. Bringing numerous methods for expression and promoter analysis to a public cloud computing service.
24. CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data.
25. Accelerating Bayesian Hierarchical Clustering of Time Series Data with a Randomised Algorithm.
26. Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures.
27. CRANKITE: A fast polypeptide backbone conformation sampler.
28. Learning about protein hydrogen bonding by minimizing contrastive divergence.
29. Exhaustive Metropolis Monte Carlo sampling and analysis of polyalanine conformations adopted under the influence of hydrogen bonds.
30. Comment on “Efficient Monte Carlo trial moves for polypeptide simulations” [J. Chem. Phys. 123, 174905 (2005)].
31. Discovering transcriptional modules by Bayesian data integration.
32. Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks
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