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Bringing numerous methods for expression and promoter analysis to a public cloud computing service.

Authors :
Polański, Krzysztof
Gao, Bo
Mason, Sam A
Brown, Paul
Ott, Sascha
Denby, Katherine J
Wild, David L
Source :
Bioinformatics; 3/1/2018, Vol. 34 Issue 5, p884-886, 3p
Publication Year :
2018

Abstract

Summary: Every year, a large number of novel algorithms are introduced to the scientific community for a myriad of applications, but using these across different research groups is often troublesome, due to suboptimal implementations and specific dependency requirements. This does not have to be the case, as public cloud computing services can easily house tractable implementations within self-contained dependency environments, making the methods easily accessible to a wider public. We have taken 14 popular methods, the majority related to expression data or promoter analysis, developed these up to a good implementation standard and housed the tools in isolated Docker containers which we integrated into the CyVerse Discovery Environment, making these easily usable for a wide community as part of the CyVerse UK project. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
34
Issue :
5
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
128347225
Full Text :
https://doi.org/10.1093/bioinformatics/btx692