20 results on '"Rathbun SL"'
Search Results
2. Community level factors and racial inequities in delivery hospitalizations involving severe maternal morbidity in the United States, 2016-2019.
- Author
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Claridy MD, Hernandez-Green N, Rathbun SL, and Cordero JF
- Subjects
- Humans, Female, United States epidemiology, Adult, Pregnancy, Delivery, Obstetric statistics & numerical data, Young Adult, Ethnicity statistics & numerical data, Socioeconomic Factors, Adolescent, Morbidity, Pregnancy Complications epidemiology, Pregnancy Complications ethnology, White People statistics & numerical data, Hospitalization statistics & numerical data, Healthcare Disparities ethnology, Healthcare Disparities statistics & numerical data
- Abstract
The objective of this study was to evaluate the racial and ethnic disparities in delivery hospitalizations involving severe maternal morbidity (SMM) by location of residence and community income. We used the 2016 to 2019 Healthcare Cost and Utilization Project National Inpatient Sample. International Classification of Diseases, Tenth Revision, Clinical Modification codes were used to identify delivery hospitalizations with SMM. Using logistic regression models, we examined the association between race and ethnicity and delivery hospitalizations involving SMM. In adjusted analyses, the models were stratified by location of residence and community income and adjusted for patient and hospital characteristics. In rural areas, non-Hispanic Black women (AOR 1.50; 95% CI 1.25-1.79) and women of other races (AOR 1.32; 95% CI 1.03-1.69) had an increased odds of experiencing a delivery hospitalization involving SMM when compared to non-Hispanic White women. In micropolitan areas, non-Hispanic Black women (AOR 1.88; 95% CI 1.79-1.97), non-Hispanic Asian/Pacific Islander women (AOR 1.54; 95% CI 1.16-2.05), and women of other races (AOR 1.31; 95% CI 1.03-1.67) had an increased odds of experiencing a delivery hospitalization involving SMM when compared to non-Hispanic White women. Non-Hispanic Black women also had increased odds of experiencing a delivery hospitalization involving SMM in communities with the lowest income (quartile 1) (AOR 1.59; 95% CI 1.49-1.66), middle income (quartiles 2 and 3) (AOR 1.81; 95% CI 1.72-1.91), and highest income (AOR 2.09; 95% CI 1.90-2.29) when compared to non-Hispanic White women. We found that location of residence and community income are associated with racial and ethnic differences in SMM in the United States. These factors, outside of individual factors assessed in previous studies, provide a better understanding of some of the structural and systemic factors that may contribute to SMM., (© 2024. The Author(s).)
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- 2024
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3. Examining demographic and psychosocial factors related to self-weighing behavior during pregnancy and postpartum periods.
- Author
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Sanders SA, Wallace ML, Burke LE, Tapia AL, Rathbun SL, Casas AD, Gary-Webb TL, Davis EM, and Méndez DD
- Abstract
Black childbearing individuals in the US experience a higher risk of postpartum weight retention (PPWR) compared to their White counterparts. Given that PPWR is related to adverse health outcomes, it is important to investigate predictors of weight-related health behaviors, such as self-weighing (i.e., using a scale at home). Regular self-weighing is an evidence-based weight management strategy, but there is minimal insight into sociodemographic factors related to frequency. The Postpartum Mothers Mobile Study (PMOMS) facilitated longitudinal ambulatory weight assessments to investigate racial inequities in PPWR. Our objective for the present study was to describe self-weighing behavior during and after pregnancy in the PMOMS cohort, as well as related demographic and psychosocial factors. Applying tree modeling and multiple regression, we examined self-weighing during and after pregnancy. Participants (N = 236) were 30.2 years old on average (SD = 4.7), with the majority being college-educated (53.8%, n = 127), earning at least $30,000 annually (61.4%, n = 145), and self-identifying as non-Hispanic White (NHW; 68.2%, n = 161). Adherence to regular self-weighing (at least once weekly) was highest among participants during pregnancy, with a considerable decline after giving birth. Low-income Black participants (earning < $30,000) were significantly less likely to reach a completion rate of ≥ 80% during pregnancy (AOR = 0.10) or the postpartum period (AOR = 0.16), compared to NHW participants earning at least $30,000 annually. Increases in perceived stress were associated with decreased odds of sustained self-weighing after delivery (AOR = 0.79). Future research should consider behavioral differences across demographic intersections, such as race and socioeconomic status, and the impact on efficacy of self-weighing., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Author(s).)
- Published
- 2023
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4. Examining reactivity to intensive longitudinal ecological momentary assessment: 12-month prospective study.
- Author
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Cajita MI, Rathbun SL, Shiffman S, Kline CE, Imes CC, Zheng Y, Ewing LJ, and Burke LE
- Subjects
- Humans, Prospective Studies, Self Report, Hunger, Ecological Momentary Assessment, Feeding Behavior
- Abstract
Purpose: To examine the association between intensive, longitudinal ecological momentary assessment (EMA) and self-reported eating behaviors., Methods: Secondary analysis of the EMPOWER study-a 12-month observational study that examined the microprocesses of relapse following intentional weight loss using smartphone-administered EMA-was conducted. Participants were asked to complete four types of EMA surveys using a mobile app. For this analysis, only the number of completed random EMA surveys was used. Using linear mixed-effects modeling, we analyzed whether the number of completed random EMA surveys was associated with changes in self-reported dietary restraint, dietary disinhibition, and susceptibility to hunger measured using the Three-Factor Eating Questionnaire (TFEQ)., Results: During the 12-month study, 132 participants completed a mean of 1062 random EMA surveys (range: 673-1362). The median time it took for participants to complete random EMA surveys was 20 s and 90% of random EMA surveys were completed within 46 s. The number of completed random EMA surveys was not significantly associated with the TFEQ scores., Conclusions: Intensive longitudinal EMA did not influence self-reported eating behaviors. The findings suggest that EMA can be used to frequently assess real-world eating behaviors with minimal concern about assessment reactivity. Nonetheless, care must be taken when designing EMA surveys-particularly when using self-reported outcome measures., Level of Evidence: Level III, prospective observational study., (© 2023. The Author(s).)
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- 2023
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5. Direct wastewater extraction as a simple and effective method for SARS-CoV-2 surveillance and COVID-19 community-level monitoring.
- Author
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Lott MEJ, Norfolk WA, Dailey CA, Foley AM, Melendez-Declet C, Robertson MJ, Rathbun SL, and Lipp EK
- Abstract
Wastewater surveillance has proven to be an effective tool to monitor the transmission and emergence of infectious agents at a community scale. Workflows for wastewater surveillance generally rely on concentration steps to increase the probability of detection of low-abundance targets, but preconcentration can substantially increase the time and cost of analyses while also introducing additional loss of target during processing. To address some of these issues, we conducted a longitudinal study implementing a simplified workflow for SARS-CoV-2 detection from wastewater, using a direct column-based extraction approach. Composite influent wastewater samples were collected weekly for 1 year between June 2020 and June 2021 in Athens-Clarke County, Georgia, USA. Bypassing any concentration step, low volumes (280 µl) of influent wastewater were extracted using a commercial kit, and immediately analyzed by RT-qPCR for the SARS-CoV-2 N1 and N2 gene targets. SARS-CoV-2 viral RNA was detected in 76% (193/254) of influent samples, and the recovery of the surrogate bovine coronavirus was 42% (IQR: 28%, 59%). N1 and N2 assay positivity, viral concentration, and flow-adjusted daily viral load correlated significantly with per-capita case reports of COVID-19 at the county-level (ρ = 0.69-0.82). To compensate for the method's high limit of detection (approximately 10
6 -107 copies l-1 in wastewater), we extracted multiple small-volume replicates of each wastewater sample. With this approach, we detected as few as five cases of COVID-19 per 100 000 individuals. These results indicate that a direct-extraction-based workflow for SARS-CoV-2 wastewater surveillance can provide informative and actionable results., Competing Interests: None declared., (© The Author(s) 2023. Published by Oxford University Press on behalf of FEMS.)- Published
- 2023
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6. Trends in Stress Throughout Pregnancy and Postpartum Period During the COVID-19 Pandemic: Longitudinal Study Using Ecological Momentary Assessment and Data From the Postpartum Mothers Mobile Study.
- Author
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Omowale SS, Casas A, Lai YH, Sanders SA, Hill AV, Wallace ML, Rathbun SL, Gary-Webb TL, Burke LE, Davis EM, and Mendez DD
- Abstract
Background: Stress is associated with adverse birth and postpartum health outcomes. Few studies have longitudinally explored racial differences in maternal stress in a birthing population in the United States during the ongoing COVID-19 pandemic., Objective: This study aimed to do the following: (1) assess changes in reported stress before, during, and after initial emergency declarations (eg, stay-at-home orders) were in place due to the COVID-19 pandemic, and (2) assess Black-White differences in reported stress in a pregnant and postpartum population from Southwestern Pennsylvania., Methods: We leveraged data from the ongoing Postpartum Mothers Mobile Study (PMOMS), which surveys participants in real time throughout the pregnancy and postpartum periods via ecological momentary assessment (EMA) and smartphone technology. We analyzed data from a subset of PMOMS participants (n=85) who were either Black or White, and who submitted EMA responses regarding stress between November 1, 2019, and August 31, 2020, the time frame of this study. We divided data into four phases based on significant events during the COVID-19 pandemic: "pre" phase (baseline), "early" phase (first case of COVID-19 reported in United States), "during" phase (stay-at-home orders), and "post" phase (stay-at-home orders eased). We assessed mean stress levels at each phase using linear mixed-effects models and post hoc contrasts based on the models., Results: Overall mean stress (0=not at all to 4=a lot) during the pre phase was 0.8 for Black and White participants (range for Black participants: 0-3.9; range for White participants: 0-2.8). There was an increase of 0.3 points (t
5649 =5.2, P<.001) in the during phase as compared with the pre phase, and an increase of 0.2 points (t5649 =3.1, P=.002) in the post phase compared with the pre phase (n=85). No difference was found between Black and White participants in the change in mean stress from the pre phase to the during phase (overall change predicted for the regression coefficient=-0.02, P=.87). There was a significant difference between Black and White participants in the change in mean stress from the during phase to the post phase (overall change predicted for the regression coefficient=0.4, P<.001)., Conclusions: There was an overall increase in mean stress levels in this subset of pregnant and postpartum participants during the same time as the emergency declarations/stay-at-home orders in the United States. Compared to baseline, mean stress levels remained elevated when stay-at-home orders eased. We found no significant difference in the mean stress levels by race. Given that stress is associated with adverse birth outcomes and postpartum health, stress induced by the ongoing COVID-19 pandemic may have adverse implications for birthing populations in the United States., International Registered Report Identifier (irrid): RR2-10.2196/13569., (©Serwaa S Omowale, Andrea Casas, Yu-Hsuan Lai, Sarah A Sanders, Ashley V Hill, Meredith L Wallace, Stephen L Rathbun, Tiffany L Gary-Webb, Lora E Burke, Esa M Davis, Dara D Mendez. Originally published in JMIR Mental Health (https://mental.jmir.org), 21.09.2021.)- Published
- 2021
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7. Spatial Analysis of the 2017 Outbreak of Hemorrhagic Disease and Physiographic Region in the Eastern United States.
- Author
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Casey CL, Rathbun SL, Stallknecht DE, and Ruder MG
- Subjects
- Animals, Appalachian Region epidemiology, Bluetongue virus isolation & purification, Bluetongue virus pathogenicity, Geography, Hemorrhagic Disease Virus, Epizootic isolation & purification, Hemorrhagic Disease Virus, Epizootic pathogenicity, Hemorrhagic Disorders epidemiology, Hemorrhagic Disorders etiology, United States epidemiology, Deer virology, Disease Outbreaks statistics & numerical data, Disease Outbreaks veterinary, Hemorrhagic Disorders veterinary, Hemorrhagic Disorders virology, Spatial Analysis
- Abstract
Hemorrhagic disease (HD) is considered one of the most significant infectious diseases of white-tailed deer in North America. Investigations into environmental conditions associated with outbreaks suggest drought conditions are strongly correlated with outbreaks in some regions of the United States. However, during 2017, an HD outbreak occurred in the Eastern United States which appeared to be associated with a specific physiographic region, the Appalachian Plateau, and not drought conditions. The objective of this study was to determine if reported HD in white-tailed deer in 2017 was correlated with physiographic region. There were 456 reports of HD from 1605 counties across 26 states and 12 physiographic regions. Of the 93 HD reports confirmed by virus isolation, 76.3% (71/93) were identified as EHDV-2 and 66.2% (47/71) were from the Appalachian Plateau. A report of HD was 4.4 times more likely to occur in the Appalachian Plateau than not in 2017. Autologistic regression models suggested a statistically significant spatial dependence. The underlying factors explaining this correlation are unknown, but may be related to a variety of host, vector, or environmental factors. This unique outbreak and its implications for HD epidemiology highlight the importance for increased surveillance and reporting efforts in the future.
- Published
- 2021
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8. Clinical management of an outbreak of nutritionally variant streptococcus endophthalmitis following intravitreal bevacizumab injection.
- Author
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Barnes AC, Rathbun SL, Kuthyar S, Hubbard GB 3rd, Bergstrom C, Yeh S, and Iyer MN
- Abstract
Background: The management of an outbreak of endophthalmitis associated with intravitreal bevacizumab represents a challenging real-time process involving identification of cases, treatment and mitigation measures during the outbreak. We summarize the clinical presentation and management of a cluster of endophthalmitis cases from contaminated bevacizumab, in addition to mathematical probabilistic assessment of the number of cases that define an outbreak., Methods: A retrospective study was conducted to assess the management of an endophthalmitis outbreak after intravitreal bevacizumab (IVB) administration. Demographic data, clinical information, individual patient management and public health reporting measures were reviewed. Outcomes of patients who received prophylactic antibiotics for endophthalmitis prevention were also reviewed. Binomial tail probability calculations were performed to determine the likelihood of clusters of endophthalmitis that could inform when an outbreak was evolving that would warrant more public health notification measures and communication., Results: Forty-five eyes of 42 patients who received IVB from a single batch were reviewed. Four cases of endophthalmitis from Granulicatella adiacens, a nutritionally-variant Streptococcus species, were treated successfully with intravitreal antibiotics ± vitrectomy. Thirty-four of the remaining 41 eyes were treated with prophylactic intravitreal vancomycin with no additional cases of endophthalmitis. Outbreak management also included CDC, ASRS and public health authority notification. Binominal tail probabilities demonstrated the rarity of clusters from a single batch (i.e. ~ 1/10,000 for 2 cases; 1/2 million for 3 cases). However, given the U.S. scale of IVB administration, there is an 87% chance of a cluster ≧ 2 and a 1% chance of a cluster ≧ 3 cases annually, which may guide outbreak management. A process diagram was developed to incorporate patient management and public health measures when an outbreak is suspected., Conclusion: Intravitreal antibiotics and vitrectomy were effective in the individual management of cases of endophthalmitis, and no serious adverse events occurred with prophylactic intravitreal vancomycin for at-risk eyes. Best practices for outbreaks should be evaluated, given their likelihood within the U.S. and the sight-threatening consequences of endophthalmitis.
- Published
- 2021
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9. Effectiveness of neuraminidase inhibitors to prevent mortality in patients with laboratory-confirmed avian influenza A H7N9.
- Author
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Cheng W, Pan A, Rathbun SL, Ge Y, Xiao Q, Martinez L, Ling F, Liu S, Wang X, Yu Z, Ebell MH, Li C, Handel A, Chen E, and Shen Y
- Subjects
- Adult, Aged, Female, Humans, Influenza, Human mortality, Laboratories, Male, Middle Aged, Antiviral Agents therapeutic use, Influenza A Virus, H7N9 Subtype, Influenza, Human drug therapy, Influenza, Human virology, Neuraminidase antagonists & inhibitors
- Abstract
Objectives: Avian influenza virus A(H7N9) remains a threat to humans and has great potential to cause a pandemic in the foreseeable future. Antiviral treatment with neuraminidase inhibitors has been recommended to treat patients with H7N9 infection as early as possible, although evidence-based research on their effectiveness for H7N9 infection is lacking., Methods: Data from all laboratory-confirmed cases of H7N9 infection in Zhejiang Province between 2013 and 2017 were retrieved, and time-dependent survival models were used to evaluate the effectiveness of treatment with neuraminidase inhibitors to reduce the risk of mortality., Results: The final optimal model found no significant association (odds ratio 1.29, 95% confidence interval 0.78-2.15) between time to treatment with neuraminidase inhibitors and survival after controlling for age and white blood cell count. Sensitivity analyses with multiple imputation for missing data concurred with the primary analysis., Conclusions: No association was found between treatment with neuraminidase inhibitors and survival in patients with H7N9 infection using various adjusted models and sensitivity analyses of missing data imputations., (Published by Elsevier Ltd.)
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- 2021
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10. Understanding Pregnancy and Postpartum Health Using Ecological Momentary Assessment and Mobile Technology: Protocol for the Postpartum Mothers Mobile Study.
- Author
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Mendez DD, Sanders SA, Karimi HA, Gharani P, Rathbun SL, Gary-Webb TL, Wallace ML, Gianakas JJ, Burke LE, and Davis EM
- Abstract
Background: There are significant racial disparities in pregnancy and postpartum health outcomes, including postpartum weight retention and cardiometabolic risk. These racial disparities are a result of a complex interplay between contextual, environmental, behavioral, and psychosocial factors., Objective: This protocol provides a description of the development and infrastructure for the Postpartum Mothers Mobile Study (PMOMS), designed to better capture women's daily experiences and exposures from late pregnancy through 1 year postpartum. The primary aims of PMOMS are to understand the contextual, psychosocial, and behavioral factors contributing to racial disparities in postpartum weight and cardiometabolic health, with a focus on the daily experiences of stress and racism, as well as contextual forms of stress (eg, neighborhood stress and structural racism)., Methods: PMOMS is a longitudinal observation study that is ancillary to an existing randomized control trial, GDM
2 (Comparison of Two Screening Strategies for Gestational Diabetes). PMOMS uses an efficient and cost-effective approach for recruitment by leveraging the infrastructure of GDM2 , facilitating enrollment of participants while consolidating staff support from both studies. The primary data collection method is ecological momentary assessment (EMA) and through smart technology (ie, smartphones and scales). The development of the study includes: (1) the pilot phase and development of the smartphone app; (2) feedback and further development of the app including selection of key measures; and (3) implementation, recruitment, and retention., Results: PMOMS aims to recruit 350 participants during pregnancy, to be followed through the first year after delivery. Recruitment and data collection started in December 2017 and are expected to continue through September 2020. Initial results are expected in December 2020. As of early May 2019, PMOMS recruited a total of 305 participants. Key strengths and features of PMOMS have included data collection via smartphone technology to reduce the burden of multiple on-site visits, low attrition rate because of participation in an ongoing trial in which women are already motivated and enrolled, high EMA survey completion and the use of EMA as a unique data collection method to understand daily experiences, and shorter than expected timeframe for enrollment because of the infrastructure of the GDM2 trial., Conclusions: This protocol outlines the development of the PMOMS, one of the first published studies to use an ongoing EMA and mobile technology protocol during pregnancy and throughout 1 year postpartum to understand the health of childbearing populations and enduring racial disparities in postpartum weight and cardiometabolic health. Our findings will contribute to the improvement of data collection methods, particularly the role of EMA in capturing multiple exposures and knowledge in real time. Furthermore, the results of the study will inform future studies investigating weight and cardiometabolic health during pregnancy and the postpartum period, including how social determinants produce population disparities in these outcomes., International Registered Report Identifier (irrid): DERR1-10.2196/13569., (©Dara D Mendez, Sarah A Sanders, Hassan A Karimi, Pedram Gharani, Stephen L Rathbun, Tiffany L Gary-Webb, Meredith L Wallace, John J Gianakas, Lora E Burke, Esa M Davis. Originally published in JMIR Research Protocols (http://www.researchprotocols.org), 26.06.2019.)- Published
- 2019
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11. Bidirectional Relationships Between Weight Change and Sleep Apnea in a Behavioral Weight Loss Intervention.
- Author
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Kline CE, Burke LE, Sereika SM, Imes CC, Rockette-Wagner B, Mendez DD, Strollo PJ, Zheng Y, Rathbun SL, and Chasens ER
- Subjects
- Adult, Aged, Female, Humans, Linear Models, Longitudinal Studies, Male, Middle Aged, Obesity complications, Overweight complications, Sleep Apnea, Obstructive diagnosis, Sleep Apnea, Obstructive therapy, Treatment Outcome, Obesity therapy, Overweight therapy, Sleep Apnea, Obstructive etiology, Weight Loss, Weight Reduction Programs
- Abstract
Objective: To examine the bidirectional relationship between weight change and obstructive sleep apnea (OSA) in the context of a behavioral weight loss intervention., Patients and Methods: Adults who were overweight or obese (N=114) participated in a 12-month behavioral weight loss intervention from April 17, 2012, through February 9, 2015. The apnea-hypopnea index (AHI), a marker of the presence and severity of OSA, was assessed at baseline, 6 months, and 12 months. Linear mixed models evaluated the effect of weight change on the AHI and the effect of OSA (AHI ≥5) on subsequent weight loss. Secondary analyses evaluated the effect of OSA on intervention attendance, meeting daily calorie goals, and accelerometer-measured physical activity., Results: At baseline, 51.8% of the sample (n=59) had OSA. Adults who achieved at least 5% weight loss had an AHI reduction that was 2.1±0.9 (adjusted mean ± SE) events/h greater than those with less than 5% weight loss (P<.05). Adults with OSA lost a mean ± SE of 2.2%±0.9% less weight during the subsequent 6-month interval compared with those without OSA (P=.02). Those with OSA were less adherent to daily calorie goals (mean ± SE: 25.2%±3.3% vs 34.8%±3.4% of days; P=.006) and had a smaller increase in daily activity (mean ± SE: 378.3±353.7 vs 1060.1±377.8 steps/d; P<.05) over 12 months than those without OSA., Conclusion: Behaviorally induced weight loss in overweight/obese adults was associated with significant AHI reduction. However, the presence of OSA was associated with blunted weight loss, potentially via reduced adherence to behaviors supporting weight loss. These results suggest that OSA screening before attempting weight loss may be helpful to identify who may benefit from additional behavioral counseling., (Copyright © 2018 Mayo Foundation for Medical Education and Research. All rights reserved.)
- Published
- 2018
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12. Law Accommodating Nonmotorized Road Users and Pedestrian Fatalities in Florida, 1975 to 2013.
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Porter JM, Rathbun SL, Bryan SJ, Arseniadis K, Caldwell LP, Corso PS, Lee JM, and Davis M
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- Accidents, Traffic legislation & jurisprudence, Adolescent, Adult, Aged, Child, Child, Preschool, Female, Florida epidemiology, Humans, Infant, Infant, Newborn, Interrupted Time Series Analysis, Interviews as Topic, Male, Middle Aged, Pedestrians statistics & numerical data, United States epidemiology, Young Adult, Accidents, Traffic mortality, Pedestrians legislation & jurisprudence
- Abstract
Objectives: To examine the effect of Florida's adoption of Statute 335.065-a law requiring the routine accommodation of nonmotorized road users (i.e., a "Complete Streets" policy)-on pedestrian fatalities and to identify factors influencing its implementation., Methods: We used a multimethod design (interrupted time-series quasi-experiment and interviews) to calculate Florida's pedestrian fatality rates from 1975 to 2013-39 quarters before and 117 quarters after adoption of the law. Using statistical models, we compared Florida with regional and national comparison groups. Semistructured interviews were conducted with 10 current and former Florida transportation professionals in 2015., Results: Florida's pedestrian fatality rates decreased significantly-by at least 0.500% more each quarter-after Statute 335.065 was adopted, resulting in more than 3500 lives saved across 29 years. Interviewees described supports and challenges associated with implementing the law., Conclusions: Florida Statute 335.065 is associated with a 3-decade decrease in pedestrian fatalities. The study also reveals factors that influenced the implementation and effectiveness of the law. Public Health Implications. Transportation policies-particularly Complete Streets policies-can have significant, quantifiable impacts on population health. Multimethod designs are valuable approaches to policy evaluations.
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- 2018
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13. Ecological Momentary Assessment in Behavioral Research: Addressing Technological and Human Participant Challenges.
- Author
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Burke LE, Shiffman S, Music E, Styn MA, Kriska A, Smailagic A, Siewiorek D, Ewing LJ, Chasens E, French B, Mancino J, Mendez D, Strollo P, and Rathbun SL
- Subjects
- Adult, Female, Humans, Male, Smartphone, Weight Reduction Programs methods, Behavioral Research methods, Ecological Momentary Assessment
- Abstract
Background: Ecological momentary assessment (EMA) assesses individuals' current experiences, behaviors, and moods as they occur in real time and in their natural environment. EMA studies, particularly those of longer duration, are complex and require an infrastructure to support the data flow and monitoring of EMA completion., Objective: Our objective is to provide a practical guide to developing and implementing an EMA study, with a focus on the methods and logistics of conducting such a study., Methods: The EMPOWER study was a 12-month study that used EMA to examine the triggers of lapses and relapse following intentional weight loss. We report on several studies that informed the implementation of the EMPOWER study: (1) a series of pilot studies, (2) the EMPOWER study's infrastructure, (3) training of study participants in use of smartphones and the EMA protocol and, (4) strategies used to enhance adherence to completing EMA surveys., Results: The study enrolled 151 adults and had 87.4% (132/151) retention rate at 12 months. Our learning experiences in the development of the infrastructure to support EMA assessments for the 12-month study spanned several topic areas. Included were the optimal frequency of EMA prompts to maximize data collection without overburdening participants; the timing and scheduling of EMA prompts; technological lessons to support a longitudinal study, such as proper communication between the Android smartphone, the Web server, and the database server; and use of a phone that provided access to the system's functionality for EMA data collection to avoid loss of data and minimize the impact of loss of network connectivity. These were especially important in a 1-year study with participants who might travel. It also protected the data collection from any server-side failure. Regular monitoring of participants' response to EMA prompts was critical, so we built in incentives to enhance completion of EMA surveys. During the first 6 months of the 12-month study interval, adherence to completing EMA surveys was high, with 88.3% (66,978/75,888) completion of random assessments and around 90% (23,411/25,929 and 23,343/26,010) completion of time-contingent assessments, despite the duration of EMA data collection and challenges with implementation., Conclusions: This work informed us of the necessary preliminary steps to plan and prepare a longitudinal study using smartphone technology and the critical elements to ensure participant engagement in the potentially burdensome protocol, which spanned 12 months. While this was a technology-supported and -programmed study, it required close oversight to ensure all elements were functioning correctly, particularly once human participants became involved., (©Lora E Burke, Saul Shiffman, Edvin Music, Mindi A Styn, Andrea Kriska, Asim Smailagic, Daniel Siewiorek, Linda J Ewing, Eileen Chasens, Brian French, Juliet Mancino, Dara Mendez, Patrick Strollo, Stephen L Rathbun. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 15.03.2017.)
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- 2017
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14. K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries.
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Jangid K, Kao MH, Lahamge A, Williams MA, Rathbun SL, and Whitman WB
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- Seawater microbiology, Water Microbiology, Algorithms, Bacteria genetics, Genomic Library, RNA, Bacterial genetics, RNA, Ribosomal, 16S genetics
- Abstract
K-shuff is a new algorithm for comparing the similarity of gene sequence libraries, providing measures of the structural and compositional diversity as well as the significance of the differences between these measures. Inspired by Ripley's K-function for spatial point pattern analysis, the Intra K-function or IKF measures the structural diversity, including both the richness and overall similarity of the sequences, within a library. The Cross K-function or CKF measures the compositional diversity between gene libraries, reflecting both the number of OTUs shared as well as the overall similarity in OTUs. A Monte Carlo testing procedure then enables statistical evaluation of both the structural and compositional diversity between gene libraries. For 16S rRNA gene libraries from complex bacterial communities such as those found in seawater, salt marsh sediments, and soils, K-shuff yields reproducible estimates of structural and compositional diversity with libraries greater than 50 sequences. Similarly, for pyrosequencing libraries generated from a glacial retreat chronosequence and Illumina® libraries generated from US homes, K-shuff required >300 and 100 sequences per sample, respectively. Power analyses demonstrated that K-shuff is sensitive to small differences in Sanger or Illumina® libraries. This extra sensitivity of K-shuff enabled examination of compositional differences at much deeper taxonomic levels, such as within abundant OTUs. This is especially useful when comparing communities that are compositionally very similar but functionally different. K-shuff will therefore prove beneficial for conventional microbiome analysis as well as specific hypothesis testing., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
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15. Obesity affects short-term folate pharmacokinetics in women of childbearing age.
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da Silva VR, Hausman DB, Kauwell GP, Sokolow A, Tackett RL, Rathbun SL, and Bailey LB
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- Adolescent, Adult, Body Mass Index, Female, Folic Acid administration & dosage, Folic Acid blood, Humans, Neural Tube Defects etiology, Obesity complications, Pregnancy, Risk Factors, Dietary Supplements, Folic Acid pharmacokinetics, Neural Tube Defects prevention & control, Obesity blood, Prenatal Care methods
- Abstract
Maternal folate status and body mass index (BMI) are independent risk factors for neural tube defects (NTD). Population-based studies have identified an inverse association between serum folate and BMI, after adjusting for intake. The objective of this intervention study was to compare the relationship between BMI and the short-term pharmacokinetic response to an oral dose of folic acid. Healthy obese (BMI 30.0 kg m(-2); n=16) and normal-weight (BMI 18.5-24.9 kg m(-2); n=16) women of childbearing age (18-35 years) were administered a single oral dose of folic acid (400 μg). Blood samples were collected over a 10-h period to evaluate the serum folate response. Fasting baseline serum folate was lower in the obese group (P=0.005); in contrast, red blood cell folate was higher (P=0.05). Area-under-the-curve for the absorption phase (0-3 h) and peak serum folate concentrations were lower in obese versus normal-weight women (P<0.005). Overall serum folate response (0-10 h) was lower in obese versus normal-weight women (repeated-measures ANOVA, P=0.001). Data suggest body distribution of folate is significantly affected by obesity, and, should pregnancy occur, may reduce the amount of folate available to the developing embryo. These findings provide additional support for a BMI-adjusted folic acid intake recommendation for NTD risk reduction.
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- 2013
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16. Changes in the concentrations of biochemical indicators of diet and nutritional status of pregnant women across pregnancy trimesters in Trujillo, Peru, 2004-2005.
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Horton DK, Adetona O, Aguilar-Villalobos M, Cassidy BE, Pfeiffer CM, Schleicher RL, Caldwell KL, Needham LL, Rathbun SL, Vena JE, and Naeher LP
- Subjects
- Adult, Carotenoids blood, Cryptoxanthins, Developing Countries, Female, Fetal Blood chemistry, Humans, Iron, Dietary blood, Linear Models, Lutein blood, Lycopene, Micronutrients blood, Micronutrients deficiency, Nutrition Surveys, Peru, Pregnancy, Selenium blood, Socioeconomic Factors, Surveys and Questionnaires, Vitamin A blood, Xanthophylls blood, Young Adult, Zeaxanthins, beta Carotene blood, Diet, Nutritional Status, Pregnancy Trimesters physiology
- Abstract
Background: In developing countries, deficiencies in essential micronutrients are common, particularly in pregnant women. Although, biochemical indicators of diet and nutrition are useful to assess nutritional status, few studies have examined such indicators throughout pregnancy in women in developing countries., Methods: The primary objective of this study was to assess the nutritional status of 78 Peruvian women throughout pregnancy for 16 different nutritional indicators including fat-soluble vitamins and carotenoids, iron-status indicators, and selenium. Venous blood samples from which serum was prepared were collected during trimesters one (n = 78), two (n = 65), three (n = 62), and at term via the umbilical cord (n = 52). Questionnaires were completed to determine the demographic characteristics of subjects. Linear mixed effects models were used to study the associations between each maternal indicator and the demographic characteristics., Results: None of the women were vitamin A and E deficient at any stage of pregnancy and only 1/62 women (1.6%) was selenium deficient during the third trimester. However, 6.4%, 44% and 64% of women had ferritin levels indicative of iron deficiency during the first, second and third trimester, respectively. Statistically significant changes (p ≤ 0.05) throughout pregnancy were noted for 15/16 nutritional indicators for this Peruvian cohort, with little-to-no association with demographic characteristics. Three carotenoids (beta-carotene, beta-cryptoxanthin and trans-lycopene) were significantly associated with education status, while trans-lycopene was associated with age and beta-cryptoxanthin with SES (p < 0.05). Concentrations of retinol, tocopherol, beta-cryptoxanthin, lutein + zeaxanthin and selenium were lower in cord serum compared with maternal serum (p < 0.05). Conversely, levels of iron status indicators (ferritin, transferrin saturation and iron) were higher in cord serum (p < 0.05)., Conclusion: The increasing prevalence of iron deficiency throughout pregnancy in these Peruvian women was expected. It was surprising though not to find deficiencies in other nutrients. The results highlight the importance of continual monitoring of women throughout pregnancy for iron deficiency which could be caused by increasing fetal needs and/or inadequate iron intake as pregnancy progresses.
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- 2013
- Full Text
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17. Radionuclide activity concentrations in forest surface fuels at the Savannah River Site.
- Author
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Hejl AM, Ottmar RD, Timothy Jannik G, Eddy TP, Rathbun SL, Commodore AA, Pearce JL, and Naeher LP
- Subjects
- South Carolina, Environmental Monitoring methods, Radioisotopes analysis, Rivers chemistry, Water Pollutants, Radioactive analysis
- Abstract
Background/objective: A study was undertaken at the United States Department of Energy's Savannah River Site (SRS), Aiken, South Carolina to investigate radionuclide activity concentrations in litter and duff from select areas at SRS. Litter (i.e. vegetative debris) and duff (i.e. highly decomposed vegetative debris) can often be the major fuels consumed during prescribed burns and have potential to release radiological contaminants into the environment., Methods: Repeated samples from 97 locations were collected systematically across SRS and analyzed for radionuclide activity. Radionuclide activity concentrations found in litter and duff were compared. As spatial trends were of interest, spatial distributions of radionuclide activity concentrations found in litter and duff and spatial dependency amongst the data were explored., Results: (7)Be, (40)K, and (137)Cs showed statistically significant proportional differences between litter and duff samples. Duff sample concentrations for (137)Cs (p < 0.0001) and (40)K (p = 0.0015) were statistically higher compared to litter samples. (7)Be activity concentrations were statistically higher in litter as compared to duff (p < 0.0001). For (40)K litter and duff samples, spatial correlation tests were not significant at p = 0.05 and the maps did not indicate any apparent high concentrations centered near possible radionuclide sources (i.e. SRS facilities). For (7)Be litter samples, significant spatial correlation was calculated (p = 0.0085). No spatial correlation was evident in the (7)Be duff samples (p = 1.0000) probably due to small sample size (n = 7). (137)Cs litter and duff samples showed significant spatial correlations (p < 0.0001 and p < 0.0001, respectively)., Conclusions: To date, few studies characterize radionuclide activity concentrations in litter and duff, and to our knowledge none present spatial analysis. Key findings show that across SRS, (137)Cs is the primary radionuclide of concern, with the highest number of samples reported above MDC in litter (51.4%) and duff samples (83.2%). However, (137)Cs litter and duff spatial trends in the maps generated from the kriging parameters do not appear to directly link the areas with higher activity concentrations with SRS facilities. The results found herein provide valuable baseline monitoring data for future studies of forest surface fuels and can be used to evaluate changes in radioactivity in surface fuels in the southeast region of the U.S., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2013
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18. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.
- Author
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Singleton DR, Furlong MA, Rathbun SL, and Whitman WB
- Subjects
- Monte Carlo Method, Sequence Analysis, DNA, Bioreactors, Gene Library, Genes, rRNA, RNA, Ribosomal, 16S genetics, Soil Microbiology
- Abstract
To determine the significance of differences between clonal libraries of environmental rRNA gene sequences, differences between homologous coverage curves, CX(D), and heterologous coverage curves, CXY(D), were calculated by a Cramér-von Mises-type statistic and compared by a Monte Carlo test procedure. This method successfully distinguished rRNA gene sequence libraries from soil and bioreactors and correctly failed to find differences between libraries of the same composition.
- Published
- 2001
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19. On spatiotemporal patchiness and the coexistence of five species of Chronogaster (Nematoda: Chronogasteridae) in a riparian wetland.
- Author
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Ettema CH, Rathbun SL, and Coleman DC
- Abstract
Spatiotemporal patchiness in the soil environment is thought to be crucial for the maintenance of soil biodiversity. It provides diverse microhabitats (allowing resource partitioning), and presents these in a complex mosaic, such that competitors may be spatially and temporally separated (promoting patch dynamics). The objective of our study was to assess the importance of patch dynamics for the maintenance of landscape-level nematode diversity. The spatiotemporal aggregation patterns in populations of five species of the bacterivorous genus Chronogaster were analyzed for a 0.7-ha riparian wetland, during four seasons, using geostatistical methods (spatiotemporal variograms, cross-correlograms, and log-normal kriging). We found that for the three most abundant species, aggregation was significant over distances of 13-39 m, with intraspecific aggregation stronger than interspecific aggregation. In addition, species patterns appeared to be temporally dynamic: local population declines alternated with local blooms at different sites and seasons. One species was consistently present at the same few sites, but the other species showed gradual temporal decreases and increases at different locations in the wetland. Combining nematode patterns with information on soil resource distributions and Chronogaster ecology, indicated that both soil resource patchiness and repeated, but largely unpredictable, disturbances caused by local soil moisture fluctuations could promote landscape-level Chronogaster diversity by providing ample 'probability refuges.' Local species populations, reduced by competition, predation and drought, could recolonize patches either through the awakening of local dormant 'seed populations,' or through limited passive dispersal by wind, water, and phoresis. We suggest that the spatiotemporal Chronogaster data provide preliminary evidence for the importance of patch dynamics in maintaining soil nematode diversity.
- Published
- 2000
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20. Association between results of ambulatory electrocardiography and development of cardiomyopathy during long-term follow-up of Doberman pinschers.
- Author
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Calvert CA, Jacobs GJ, Smith DD, Rathbun SL, and Pickus CW
- Subjects
- Age Factors, Animals, Cardiomyopathy, Dilated diagnosis, Cardiomyopathy, Dilated physiopathology, Cohort Studies, Dog Diseases mortality, Dog Diseases physiopathology, Dogs, Echocardiography veterinary, Female, Heart Failure mortality, Heart Failure veterinary, Heart Rate, Linear Models, Male, Prognosis, Sex Factors, Ventricular Premature Complexes diagnosis, Ventricular Premature Complexes physiopathology, Cardiomyopathy, Dilated veterinary, Dog Diseases diagnosis, Electrocardiography, Ambulatory veterinary, Ventricular Premature Complexes veterinary
- Abstract
Objective: To characterize ambulatory electrocardiographic results of overtly healthy Doberman Pinschers and determine associations between those results and development of dilated cardiomyopathy., Design: Cohort study., Animals: 114 (58 male, 56 female) overtly healthy Doberman Pinschers without echocardiographic evidence of cardiac disease on initial examination., Procedure: Echocardiograms and 24-hour ambulatory electrocardiograms (Holter recordings) were obtained initially and at variable intervals. The status (live vs dead) of all dogs was known at least 2 years and as long as 10 years after initial examination (mean [+/- SD] follow-up time, 4.33 +/- 1.84 years). Associations between development of dilated cardiomyopathy and number of ventricular premature contractions (VPC), age, and sex were determined., Results: 55 dogs (48%) did not have VPC on initial Holter recordings, and only 8 dogs had > 50 VPC/24 hours. The likelihood that a dog would have VPC was associated with increasing age and being male. At least 1 VPC/24 hours, and in particular, > 50 VPC/24 hours or > or = 1 couplet or triplet of VPC/24 hours, were predictive of subsequent development of dilated cardiomyopathy. Fifty-four dogs (47%) developed dilated cardiomyopathy; 12 were still alive at the end of the study, and 42 had died. Twenty-five of these 42 dogs died after the onset of congestive heart failure (CHF), 15 died suddenly before the onset of overt CHF, and 2 died of noncardiac causes. More males developed dilated cardiomyopathy than females, and dogs that died suddenly were approximately 1 year younger than those that developed CHF., Conclusions and Clinical Relevance: Results of high-quality Holter recordings may be used to identify overtly healthy Doberman Pinschers that are at a high risk for dilated cardiomyopathy.
- Published
- 2000
- Full Text
- View/download PDF
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