ATP-gated ion channels (P2X receptors) contain two hydrophobic segments that are presumed to span the plasma membrane (TM1 and TM2). Pairs of cysteines were introduced by mutagenesis into the rat P2X2 receptor, one in TM1 one in TM2, at positions where single substitutions have previously been shown to confer sensitivity to methanethiosulfonates. The receptors were expressed in HEK293 cells; interactions between the cysteines were sought by measuring the effects on ionic currents of dithiothreitol and methanethiosulfonates. Nine pairs gave normally functioning channels: F44C/I328C, F44C/N333C, F44C/L338C, Q37C/I328C, Q37C/N333C, Q37C/T336C, Q37C/L338C, G30C/I328C, G30C/N333C. None formed functionally detectable disulfide bonds. Currents at the F44C/L338C receptor had time course and ATP-sensitivity similar to those for the F44C mutation alone. Methyl-methanethiosulfonate bound to L338C but did not inhibit ionic current. Methyl-methanethiosulfonate inhibited currents at F44C, but not at F44C/L338C. Ethylammonium-methylthiosulfonate inhibited currents at both F44C and L338C, but not at F44C/L338C. It reversed the rapid current deactivation at F44C/L338C. The results suggest that a methanethiosulfonate binding to L338C prevents binding to F44C; this might indicate proximity of these two residues. Keywords: P2X receptors, electrophysiology, cysteine mutagenesis, sulfhydryl group, methanethiosulfonates Introduction P2X receptors are multimeric proteins that function as ATP receptors and membrane ion channels. An ion permeation pathway opens upon activation by extracellular ATP at concentrations in the low micromolar range. The subunits are 379–595 amino acids in length, with intracellular N- and C-termini, two membrane-spanning domains (TM1 and TM2), and an ectodomain of about 280 amino acids (North & Barnard, 1997). Current evidence suggests that three or perhaps six subunits form a channel (Nicke et al., 1998). The P2X receptor subunits are unrelated in sequence to any other proteins or domains. Approaches to understanding the modus operandi of these channels have therefore depended on site-directed mutagenesis combined with expression in heterologous cells and measurements of ionic currents. One of the most useful of such approaches has been cysteine mutagenesis. In the native receptor, the ectodomain of each protein has 10 cysteine residues, and their positions are completely conserved among all P2X receptor subunits. The normal function of the receptors, measured as the ability of ATP to open the ion channel, is unaffected by reducing agents such as dithiothreitol (DTT); this indicates that these cysteines are either not disulfided, or that they are disulfided but inaccessible to DTT (Rassendren et al., 1997; Clyne et al., 2002; Ennion & Evans, 2002). Substitution of these cysteines individually by alanine leads to the appearance of a free sulfhydryl group that can be labelled with biotinylated methanethiosulfonate (MTS) (Ennion & Evans, 2002) and systematic mutagenesis has been used to assign possible disulfide bonds in the native receptors (Clyne et al., 2002; Ennion & Evans, 2002). The absence of any action of DTT or MTS derivatives on the native receptor has permitted approaches in which new cysteines have been introduced by mutagenesis; the function of the receptor has then been probed with sulfhydryl reactive MTS compounds or silver (Rassendren et al., 1997; Egan et al., 1998; Stoop et al., 1999; Jiang et al., 2000; 2001; Haines et al., 2001). Such experiments have identified positions in TM2 where, after introduction of cysteine, one or more MTS compounds reduce the currents elicited by ATP (Rassendren et al., 1997; Egan et al., 1998). From comparing the effects of MTS compounds of different size and charge, and by measuring the relative effects on inward and outward currents, it has been inferred that Thr336 lies in the outer vestibule of the channel but close to the conducting pathway. Ile328 and Asn333 may also be in the outer vestibule. However, currents through channels with substitutions L338C and D349C were inhibited by the permeant cation ethylammonium-methanethiosulfonate (MTSEA), but not by the less permeant cation trimethylethylammonium-methanethiosulfonate (MTSET) or impermeant anion sulfonatoethyl-methanethiosulfonate (MTSES); this suggests that these positions are still accessible to the aqueous environment, but further towards the cell interior. Because D349C was more accessible when the channel had been opened, it was suggested that it lies internal to a channel ‘gate'. Positions in and around TM1 have also been identified at which the introduction of cysteine confers sensitivity to inhibition by MTS. A region some 15 amino acids towards the C-terminus from the end of TM1 (Ser65–Lys71) has been implicated in the binding of ATP. The attachment of negatively charged MTS compounds at I67C reduced the current evoked by ATP, but this was surmountable when the ATP concentration was increased. Within TM1 itself, G30C, Q37C and F44C substitutions result in channels blocked by the small neutral methyl-methanethiosulfonate (MTSM), but not by relatively larger, charged MTS compounds. V48C, positioned at the outer edge of TM1, shows block by all MTS compounds. Finally, in the double mutant V48C/I328C, ATP did not elicit any membrane current until the receptor has been treated with and reduced by DTT; this indicates that a disulfide bond formed between these two substituted cysteines prevents the protein movement necessary for channel opening. Other evidence also implicates the outer end of TM1 in channel gating (Jiang et al., 2001; Haines et al., 2001). The demonstration of disulfide formation between cysteines at Val48 and Ile328 is an important finding not only because it indicates movements necessary for channel opening, but also because it places clear constraints on the proximity of these residues within the protein (Cα – Cα