340 results on '"Pike, G. Bruce"'
Search Results
2. Plug-and-Play Latent Feature Editing for Orientation-Adaptive Quantitative Susceptibility Mapping Neural Networks
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Gao, Yang, Xiong, Zhuang, Shan, Shanshan, Liu, Yin, Rong, Pengfei, Li, Min, Wilman, Alan H, Pike, G. Bruce, Liu, Feng, and Sun, Hongfu
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Quantitative susceptibility mapping (QSM) is a post-processing technique for deriving tissue magnetic susceptibility distribution from MRI phase measurements. Deep learning (DL) algorithms hold great potential for solving the ill-posed QSM reconstruction problem. However, a significant challenge facing current DL-QSM approaches is their limited adaptability to magnetic dipole field orientation variations during training and testing. In this work, we propose a novel Orientation-Adaptive Latent Feature Editing (OA-LFE) module to learn the encoding of acquisition orientation vectors and seamlessly integrate them into the latent features of deep networks. Importantly, it can be directly Plug-and-Play (PnP) into various existing DL-QSM architectures, enabling reconstructions of QSM from arbitrary magnetic dipole orientations. Its effectiveness is demonstrated by combining the OA-LFE module into our previously proposed phase-to-susceptibility single-step instant QSM (iQSM) network, which was initially tailored for pure-axial acquisitions. The proposed OA-LFE-empowered iQSM, which we refer to as iQSM+, is trained in a self-supervised manner on a specially-designed simulation brain dataset. Comprehensive experiments are conducted on simulated and in vivo human brain datasets, encompassing subjects ranging from healthy individuals to those with pathological conditions. These experiments involve various MRI platforms (3T and 7T) and aim to compare our proposed iQSM+ against several established QSM reconstruction frameworks, including the original iQSM. The iQSM+ yields QSM images with significantly improved accuracies and mitigates artifacts, surpassing other state-of-the-art DL-QSM algorithms., Comment: 13pages, 9figures
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- 2023
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3. Correcting for T1 bias in Magnetization Transfer Saturation (MTsat) Maps Using Sparse-MP2RAGE
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Rowley, Christopher D., Nelson, Mark C., Campbell, Jennifer S. W., Leppert, Ilana R., Pike, G. Bruce, and Tardif, Christine L.
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Physics - Medical Physics - Abstract
Purpose: Magnetization transfer saturation (MTsat) mapping is commonly used to examine the macromolecular content of brain tissue. This study compared variable flip angle (VFA) T1 mapping against compressed sensing (cs)MP2RAGE T1 mapping for accelerating MTsat imaging. Methods: VFA, MP2RAGE and csMP2RAGE were compared against inversion recovery (IR) T1 in a phantom at 3 Tesla. The same 1 mm VFA, MP2RAGE and csMP2RAGE protocols were acquired in four healthy subjects to compare the resulting T1 and MTsat. Bloch-McConnell simulations were used to investigate differences between the phantom and in vivo T1 results. Finally, ten healthy controls were imaged twice with the csMP2RAGE MTsat protocol to quantify repeatability. Results: The MP2RAGE and csMP2RAGE protocols were 13.7% and 32.4% faster than the VFA protocol, respectively. All approaches provided accurate T1 values (<5% difference) in the phantom, but the accuracy of the T1 times was more impacted by differences in T2 for VFA than for MP2RAGE. In vivo, VFA generated longer T1 times than MP2RAGE and csMP2RAGE. Simulations suggest that the bias in the T1 values between VFA and IR-based approaches (MP2RAGE and IR) could be explained by the MT-effects from the inversion pulse. In the test-retest experiment, we found that the csMP2RAGE has a minimum detectable change of 3% for T1 mapping and 7.9% for MTsat imaging. Conclusions: We demonstrated that csMP2RAGE can be used in place of VFA T1 mapping in an MTsat protocol. Furthermore, a shorter scan time and high repeatability can be achieved using the csMP2RAGE sequence., Comment: 23 pages, 7 figures, 2 tables
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- 2023
4. Using BOLD-fMRI to Compute the Respiration Volume per Time (RTV) and Respiration Variation (RV) with Convolutional Neural Networks (CNN) in the Human Connectome Development Cohort
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Addeh, Abdoljalil, Vega, Fernando, Williams, Rebecca J, Golestani, Ali, Pike, G. Bruce, and MacDonald, M. Ethan
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Electrical Engineering and Systems Science - Signal Processing ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
In many fMRI studies, respiratory signals are unavailable or do not have acceptable quality. Consequently, the direct removal of low-frequency respiratory variations from BOLD signals is not possible. This study proposes a one-dimensional CNN model for reconstruction of two respiratory measures, RV and RVT. Results show that a CNN can capture informative features from resting BOLD signals and reconstruct realistic RV and RVT timeseries. It is expected that application of the proposed method will lower the cost of fMRI studies, reduce complexity, and decrease the burden on participants as they will not be required to wear a respiratory bellows., Comment: 6 pages, 5 figures
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- 2023
5. Dual-encoded magnetization transfer and diffusion imaging and its application to tract-specific microstructure mapping
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Leppert, Ilana R, Bontempi, Pietro, Rowley, Christopher D, Campbell, Jennifer SW, Nelson, Mark C, Schiavi, Simona, Pike, G Bruce, Daducci, Alessandro, and Tardif, Christine L
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Physics - Medical Physics - Abstract
We present a novel dual-encoded magnetization transfer (MT) and diffusion-weighted sequence and demonstrate its potential to resolve distinct properties of white matter fiber tracts at the sub-voxel level. The sequence was designed and optimized for maximal MT contrast efficiency. The resulting whole brain 2.6 mm isotropic protocol to measure tract-specific MT ratio (MTR) has a scan time under 7 minutes. Ten healthy subjects were scanned twice to assess repeatability. Two different analysis methods were contrasted: a technique to extract tract-specific MTR using Convex Optimization Modeling for Microstructure Informed Tractography (COMMIT), a global optimization technique; and conventional MTR tractometry. The results demonstrate that the tract-specific method can reliably resolve the MT ratios of major white matter fiber pathways and is less affected by partial volume effects than conventional multi-modal tractometry. Dual-encoded MT and diffusion is expected to both increase the sensitivity to microstructure alterations of specific tracts due to disease, ageing or learning, as well as lead to weighted structural connectomes with more anatomical specificity., Comment: 26 pages, 7 figures
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- 2023
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6. Optimization of acquisition parameters for cortical inhomogeneous magnetization transfer (ihMT) imaging using a rapid gradient echo readout
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Rowley, Christopher D., Campbell, Jennifer S. W., Leppert, Ilana R., Nelson, Mark C., Pike, G. Bruce, and Tardif, Christine L.
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Physics - Medical Physics - Abstract
Purpose: Imaging biomarkers with increased myelin specificity are needed to better understand the complex progression of neurological disorders. Inhomogeneous magnetization transfer (ihMT) imaging is an emergent technique that has a high degree of specificity for myelin content but suffers from low signal-to-noise ratio (SNR). This study used simulations to determine optimal sequence parameters for ihMT imaging for use in high-resolution cortical mapping. Methods: MT-weighted cortical image intensity and ihMT SNR were simulated using modified Bloch equations for a range of sequence parameters. The acquisition time was limited to 4.5 min/volume. A custom MT-weighted RAGE sequence with center-out k-space encoding was used to enhance SNR at 3 Tesla. Pulsed MT imaging was studied over a range of saturation parameters and the impact of the turbo-factor on effective ihMT was investigated. 1 mm isotropic ihMTsat maps were generated in 25 healthy adults using an optimized protocol. Results: Greater SNR was observed for larger number of bursts consisting of 6-8 saturation pulses each, combined with a high readout turbo-factor. However, that protocol suffered from a point spread function that was more than twice the nominal resolution. For high-resolution cortical imaging, we selected a protocol with a higher effective resolution at the cost of a lower SNR. We present the first group-average ihMTsat whole-brain map at 1 mm isotropic resolution. Conclusion: This study presents the impact of saturation and excitation parameters on ihMTsat SNR and resolution. We demonstrate the feasibility of high-resolution cortical myelin imaging using ihMTsat in less than 20 minutes.
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- 2023
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7. Instant tissue field and magnetic susceptibility mapping from MR raw phase using Laplacian enabled deep neural networks
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Gao, Yang, Xiong, Zhuang, Fazlollahi, Amir, Nestor, Peter J, Vegh, Viktor, Nasrallah, Fatima, Winter, Craig, Pike, G. Bruce, Crozier, Stuart, Liu, Feng, and Sun, Hongfu
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Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Medical Physics - Abstract
Quantitative susceptibility mapping (QSM) is a valuable MRI post-processing technique that quantifies the magnetic susceptibility of body tissue from phase data. However, the traditional QSM reconstruction pipeline involves multiple non-trivial steps, including phase unwrapping, background field removal, and dipole inversion. These intermediate steps not only increase the reconstruction time but amplify noise and errors. This study develops a large-stencil Laplacian preprocessed deep learning-based neural network for near instant quantitative field and susceptibility mapping (i.e., iQFM and iQSM) from raw MR phase data. The proposed iQFM and iQSM methods were compared with established reconstruction pipelines on simulated and in vivo datasets. In addition, experiments on patients with intracranial hemorrhage and multiple sclerosis were also performed to test the generalization of the novel neural networks. The proposed iQFM and iQSM methods yielded comparable results to multi-step methods in healthy subjects while dramatically improving reconstruction accuracies on intracranial hemorrhages with large susceptibilities. The reconstruction time was also substantially shortened from minutes using multi-step methods to only 30 milliseconds using the trained iQFM and iQSM neural networks.
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- 2021
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8. A systematic review of preclinical and clinical transcranial ultrasound neuromodulation and opportunities for functional connectomics
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Pellow, Carly, Pichardo, Samuel, and Pike, G Bruce
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- 2024
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9. Reproducibility of cerebellar involvement as quantified by consensus structural MRI biomarkers in advanced essential tremor
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Wang, Qing, Aljassar, Meshal, Bhagwat, Nikhil, Zeighami, Yashar, Evans, Alan C., Dagher, Alain, Pike, G. Bruce, Sadikot, Abbas F., and Poline, Jean-Baptiste
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- 2023
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10. The effect of transcranial ultrasound pulse repetition frequency on sustained inhibition in the human primary motor cortex: A double-blind, sham-controlled study
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Zadeh, Ali K., Raghuram, Hrishikesh, Shrestha, Shirshak, Kibreab, Mekale, Kathol, Iris, Martino, Davide, Pike, G. Bruce, Pichardo, Samuel, and Monchi, Oury
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- 2024
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11. Accelerating Quantitative Susceptibility Mapping using Compressed Sensing and Deep Neural Network
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Gao, Yang, Cloos, Martijn, Liu, Feng, Crozier, Stuart, Pike, G. Bruce, and Sun, Hongfu
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Quantitative susceptibility mapping (QSM) is an MRI phase-based post-processing method that quantifies tissue magnetic susceptibility distributions. However, QSM acquisitions are relatively slow, even with parallel imaging. Incoherent undersampling and compressed sensing reconstruction techniques have been used to accelerate traditional magnitude-based MRI acquisitions; however, most do not recover the full phase signal due to its non-convex nature. In this study, a learning-based Deep Complex Residual Network (DCRNet) is proposed to recover both the magnitude and phase images from incoherently undersampled data, enabling high acceleration of QSM acquisition. Magnitude, phase, and QSM results from DCRNet were compared with two iterative and one deep learning methods on retrospectively undersampled acquisitions from six healthy volunteers, one intracranial hemorrhage and one multiple sclerosis patients, as well as one prospectively undersampled healthy subject using a 7T scanner. Peak signal to noise ratio (PSNR), structural similarity (SSIM) and region-of-interest susceptibility measurements are reported for numerical comparisons. The proposed DCRNet method substantially reduced artifacts and blurring compared to the other methods and resulted in the highest PSNR and SSIM on the magnitude, phase, local field, and susceptibility maps. It led to 4.0% to 8.8% accuracy improvements in deep grey matter susceptibility than some existing methods, when the acquisition was accelerated four times. The proposed DCRNet also dramatically shortened the reconstruction time by nearly 10 thousand times for each scan, from around 80 hours using conventional approaches to only 30 seconds., Comment: 10 figures
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- 2021
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12. Detecting monocyte trafficking in an animal model of glioblastoma using R2* and quantitative susceptibility mapping
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Yang, Runze, Hamilton, A. Max, Sun, Hongfu, Rawji, Khalil S., Sarkar, Susobhan, Mirzaei, Reza, Pike, G. Bruce, Yong, V. Wee., and Dunn, Jeff F.
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- 2023
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13. xQSM: Quantitative Susceptibility Mapping with Octave Convolutional and Noise Regularized Neural Networks
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Gao, Yang, Zhu, Xuanyu, Moffat, Bradford A., Glarin, Rebecca, Wilman, Alan H., Pike, G. Bruce, Crozier, Stuart, Liu, Feng, and Sun, Hongfu
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Quantitative susceptibility mapping (QSM) is a valuable magnetic resonance imaging (MRI) contrast mechanism that has demonstrated broad clinical applications. However, the image reconstruction of QSM is challenging due to its ill-posed dipole inversion process. In this study, a new deep learning method for QSM reconstruction, namely xQSM, was designed by introducing modified state-of-the-art octave convolutional layers into the U-net backbone. The xQSM method was compared with recentlyproposed U-net-based and conventional regularizationbased methods, using peak signal to noise ratio (PSNR), structural similarity (SSIM), and region-of-interest measurements. The results from a numerical phantom, a simulated human brain, four in vivo healthy human subjects, a multiple sclerosis patient, a glioblastoma patient, as well as a healthy mouse brain showed that the xQSM led to suppressed artifacts than the conventional methods, and enhanced susceptibility contrast, particularly in the ironrich deep grey matter region, than the original U-net, consistently. The xQSM method also substantially shortened the reconstruction time from minutes using conventional iterative methods to only a few seconds., Comment: 37 pages, 10 figures, 3 table
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- 2020
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14. Harmonizing brain magnetic resonance imaging methods for vascular contributions to neurodegeneration
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Smith, Eric E, Biessels, Geert Jan, De Guio, François, de Leeuw, Frank Erik, Duchesne, Simon, Düring, Marco, Frayne, Richard, Ikram, M Arfan, Jouvent, Eric, MacIntosh, Bradley J, Thrippleton, Michael J, Vernooij, Meike W, Adams, Hieab, Backes, Walter H, Ballerini, Lucia, Black, Sandra E, Chen, Christopher, Corriveau, Rod, DeCarli, Charles, Greenberg, Steven M, Gurol, M Edip, Ingrisch, Michael, Job, Dominic, Lam, Bonnie YK, Launer, Lenore J, Linn, Jennifer, McCreary, Cheryl R, Mok, Vincent CT, Pantoni, Leonardo, Pike, G Bruce, Ramirez, Joel, Reijmer, Yael D, Romero, Jose Rafael, Ropele, Stefan, Rost, Natalia S, Sachdev, Perminder S, Scott, Christopher JM, Seshadri, Sudha, Sharma, Mukul, Sourbron, Steven, Steketee, Rebecca ME, Swartz, Richard H, van Oostenbrugge, Robert, van Osch, Matthias, van Rooden, Sanneke, Viswanathan, Anand, Werring, David, Dichgans, Martin, and Wardlaw, Joanna M
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Biomedical and Clinical Sciences ,Clinical Sciences ,Neurodegenerative ,Biomedical Imaging ,Brain Disorders ,Neurosciences ,Neurological ,Cerebrovascular disease ,Stroke ,Dementia ,Magnetic resonance imaging ,Radiology ,Genetics ,Biological psychology - Abstract
IntroductionMany consequences of cerebrovascular disease are identifiable by magnetic resonance imaging (MRI), but variation in methods limits multicenter studies and pooling of data. The European Union Joint Program on Neurodegenerative Diseases (EU JPND) funded the HARmoNizing Brain Imaging MEthodS for VaScular Contributions to Neurodegeneration (HARNESS) initiative, with a focus on cerebral small vessel disease.MethodsSurveys, teleconferences, and an in-person workshop were used to identify gaps in knowledge and to develop tools for harmonizing imaging and analysis.ResultsA framework for neuroimaging biomarker development was developed based on validating repeatability and reproducibility, biological principles, and feasibility of implementation. The status of current MRI biomarkers was reviewed. A website was created at www.harness-neuroimaging.org with acquisition protocols, a software database, rating scales and case report forms, and a deidentified MRI repository.ConclusionsThe HARNESS initiative provides resources to reduce variability in measurement in MRI studies of cerebral small vessel disease.
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- 2019
15. Direct machine learning reconstruction of respiratory variation waveforms from resting state fMRI data in a pediatric population
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Addeh, Abdoljalil, Vega, Fernando, Medi, Prathistith Raj, Williams, Rebecca J., Pike, G. Bruce, and MacDonald, M. Ethan
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- 2023
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16. Effects of prenatal alcohol exposure on neurobehavioural development and volume of rostral cingulate cortex subregions
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Aghamohammadi-Sereshki, Arash, McMorris, Carly A., Gibbard, W. Ben, Tortorelli, Christina, Pike, G. Bruce, and Lebel, Catherine
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Pediatric research ,Alcoholic beverages -- Psychological aspects -- Health aspects ,Prenatal influences -- Psychological aspects -- Health aspects ,Cingulate cortex -- Health aspects -- Psychological aspects ,Health ,Psychology and mental health - Abstract
Background: Maternal alcohol consumption during pregnancy can have widespread and long-lasting effects on children's cognition, behaviour, brain function and structure. The pregenual anterior cingulate cortex (ACC) and the anterior midcingulate cortex (MCC) mediate emotional and cognitive behaviours that are affected by prenatal alcohol exposure. However, the neurobehavioural development of the pregenual ACC and anterior MCC has not been examined in people with prenatal alcohol exposure. Methods: We recruited 30 children and adolescents with prenatal alcohol exposure and 50 age- and gender-matched unexposed controls. We acquired structural MRI data sets on a 3 T scanner. We manually delineated 2 areas of the rostral cingulate cortex--the pregenual ACC and the anterior MCC--and compared them between groups. We measured behavioural and emotional problems using the Behaviour Assessment System for Children, 2nd Edition, Parent Rating Scale, and then explored their associations with rostral cingulate cortex volumes. Results: Intracranial-normalized volumes of the right pregenual ACC and the right total rostral cingulate cortex were significantly smaller in individuals with prenatal alcohol exposure than in unexposed controls. The volume of the right anterior MCC had a significant positive association with scores on the Internalizing Problems scale in individuals with prenatal alcohol exposure. Limitations: This study was cross-sectional, and detailed information about the timing and amount of exposure was not always available. Conclusion: Prenatal alcohol exposure is associated with lower volumes in the right pregenual ACC. This finding may underlie some of the emotional and behavioural problems experienced by individuals with prenatal alcohol exposure., Introduction The first well-known reports of the dystrophic and teratogenic effects of alcohol were published in the late 1960s (1) and early 1970s. (2,3) Since then, a growing body of [...]
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- 2022
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17. Genetic architecture of subcortical brain structures in 38,851 individuals
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Satizabal, Claudia L, Adams, Hieab HH, Hibar, Derrek P, White, Charles C, Knol, Maria J, Stein, Jason L, Scholz, Markus, Sargurupremraj, Muralidharan, Jahanshad, Neda, Roshchupkin, Gennady V, Smith, Albert V, Bis, Joshua C, Jian, Xueqiu, Luciano, Michelle, Hofer, Edith, Teumer, Alexander, van der Lee, Sven J, Yang, Jingyun, Yanek, Lisa R, Lee, Tom V, Li, Shuo, Hu, Yanhui, Koh, Jia Yu, Eicher, John D, Desrivières, Sylvane, Arias-Vasquez, Alejandro, Chauhan, Ganesh, Athanasiu, Lavinia, Rentería, Miguel E, Kim, Sungeun, Hoehn, David, Armstrong, Nicola J, Chen, Qiang, Holmes, Avram J, den Braber, Anouk, Kloszewska, Iwona, Andersson, Micael, Espeseth, Thomas, Grimm, Oliver, Abramovic, Lucija, Alhusaini, Saud, Milaneschi, Yuri, Papmeyer, Martina, Axelsson, Tomas, Ehrlich, Stefan, Roiz-Santiañez, Roberto, Kraemer, Bernd, Håberg, Asta K, Jones, Hannah J, Pike, G Bruce, Stein, Dan J, Stevens, Allison, Bralten, Janita, Vernooij, Meike W, Harris, Tamara B, Filippi, Irina, Witte, A Veronica, Guadalupe, Tulio, Wittfeld, Katharina, Mosley, Thomas H, Becker, James T, Doan, Nhat Trung, Hagenaars, Saskia P, Saba, Yasaman, Cuellar-Partida, Gabriel, Amin, Najaf, Hilal, Saima, Nho, Kwangsik, Mirza-Schreiber, Nazanin, Arfanakis, Konstantinos, Becker, Diane M, Ames, David, Goldman, Aaron L, Lee, Phil H, Boomsma, Dorret I, Lovestone, Simon, Giddaluru, Sudheer, Le Hellard, Stephanie, Mattheisen, Manuel, Bohlken, Marc M, Kasperaviciute, Dalia, Schmaal, Lianne, Lawrie, Stephen M, Agartz, Ingrid, Walton, Esther, Tordesillas-Gutierrez, Diana, Davies, Gareth E, Shin, Jean, Ipser, Jonathan C, Vinke, Louis N, Hoogman, Martine, Jia, Tianye, Burkhardt, Ralph, Klein, Marieke, Crivello, Fabrice, Janowitz, Deborah, Carmichael, Owen, Haukvik, Unn K, Aribisala, Benjamin S, and Schmidt, Helena
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Biological Sciences ,Genetics ,Brain Disorders ,Mental Health ,Neurosciences ,Human Genome ,2.1 Biological and endogenous factors ,Neurological ,Adult ,Aged ,Animals ,Brain ,Cohort Studies ,Drosophila melanogaster ,Genetic Variation ,Genome-Wide Association Study ,Humans ,Magnetic Resonance Imaging ,Middle Aged ,Neurodevelopmental Disorders ,Organ Size ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
Subcortical brain structures are integral to motion, consciousness, emotions and learning. We identified common genetic variation related to the volumes of the nucleus accumbens, amygdala, brainstem, caudate nucleus, globus pallidus, putamen and thalamus, using genome-wide association analyses in almost 40,000 individuals from CHARGE, ENIGMA and UK Biobank. We show that variability in subcortical volumes is heritable, and identify 48 significantly associated loci (40 novel at the time of analysis). Annotation of these loci by utilizing gene expression, methylation and neuropathological data identified 199 genes putatively implicated in neurodevelopment, synaptic signaling, axonal transport, apoptosis, inflammation/infection and susceptibility to neurological disorders. This set of genes is significantly enriched for Drosophila orthologs associated with neurodevelopmental phenotypes, suggesting evolutionarily conserved mechanisms. Our findings uncover novel biology and potential drug targets underlying brain development and disease.
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- 2019
18. Instant tissue field and magnetic susceptibility mapping from MRI raw phase using Laplacian enhanced deep neural networks
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Gao, Yang, Xiong, Zhuang, Fazlollahi, Amir, Nestor, Peter J, Vegh, Viktor, Nasrallah, Fatima, Winter, Craig, Pike, G. Bruce, Crozier, Stuart, Liu, Feng, and Sun, Hongfu
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- 2022
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19. Visceral adiposity is associated with metabolic profiles predictive of type 2 diabetes and myocardial infarction
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Raheem, Javeria, Sliz, Eeva, Shin, Jean, Holmes, Michael V., Pike, G. Bruce, Richer, Louis, Gaudet, Daniel, Paus, Tomas, and Pausova, Zdenka
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- 2022
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20. Promise and pitfalls of g-ratio estimation with MRI
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Campbell, Jennifer S. W., Leppert, Ilana R., Boudreau, Mathieu, Narayanan, Sridar, Duval, Tanguy, Cohen-Adad, Julien, Pike, G. Bruce, and Stikov, Nikola
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Physics - Medical Physics ,Physics - Biological Physics ,Quantitative Biology - Quantitative Methods - Abstract
The fiber g-ratio is the ratio of the inner to the outer diameter of the myelin sheath of a myelinated axon. It has a limited dynamic range in healthy white matter, as it is optimized for speed of signal conduction, cellular energetics, and spatial constraints. In vivo imaging of the g-ratio in health and disease would greatly increase our knowledge of the nervous system and our ability to diagnose, monitor, and treat disease. MRI based g-ratio imaging was first conceived in 2011, and expanded to be feasible in full brain with preliminary results in 2013. This manuscript reviews the growing g-ratio imaging literature and speculates on future applications. It details the methodology for imaging the g-ratio with MRI, and describes the known pitfalls and challenges in doing so., Comment: This is the accepted version, accepted by NeuroImage. It contains minor revisions suggested by reviewers
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- 2017
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21. Analysis and visualization of the effect of multiple sclerosis on biological brain age.
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Romme, Catharina J. A., Stanley, Emma A. M., Mouches, Pauline, Wilms, Matthias, Pike, G. Bruce, Metz, Luanne M., and Forkert, Nils D.
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CONVOLUTIONAL neural networks ,MAGNETIC resonance imaging ,OLDER patients ,DISEASE relapse ,DEEP learning - Abstract
ntroduction: The rate of neurodegeneration in multiple sclerosis (MS) is an important biomarker for disease progression but can be challenging to quantify. The brain age gap, which quantifies the difference between a patient's chronological and their estimated biological brain age, might be a valuable biomarker of neurodegeneration in patients with MS. Thus, the aim of this study was to investigate the value of an image-based prediction of the brain age gap using a deep learning model and compare brain age gap values between healthy individuals and patients with MS. Methods: A multi-center dataset consisting of 5,294 T1-weighted magnetic resonance images of the brain from healthy individuals aged between 19 and 89 years was used to train a convolutional neural network (CNN) for biological brain age prediction. The trained model was then used to calculate the brain age gap in 195 patients with relapsing remitting MS (20--60 years). Additionally, saliency maps were generated for healthy subjects and patients with MS to identify brain regions that were deemed important for the brain age prediction task by the CNN Results: Overall, the application of the CNN revealed accelerated brain aging with a larger brain age gap for patients with MS with a mean of 6.98 ± 7.18 years in comparison to healthy test set subjects (0.23 ± 4.64 years). The brain age gap for MS patients was weakly to moderately correlated with age at disease onset (ρ = 0.299, p < 0.0001), EDSS score (ρ = 0.206, p = 0.004), disease duration (ρ = 0.162, p = 0.024), lesion volume (ρ = 0.630, p < 0.0001), and brain parenchymal fraction (ρ = 0.718, p < 0.0001). The saliency maps indicated significant differences in the lateral ventricle (p < 0.0001), insula (p < 0.0001), third ventricle (p < 0.0001), and fourth ventricle (p = 0.0001) in the right hemisphere. In the left hemisphere, the inferior lateral ventricle (p < 0.0001) and the third ventricle (p < 0.0001) showed significant differences. Furthermore, the Dice similarity coefficient showed the highest overlap of salient regions between the MS patients and the oldest healthy subjects, indicating that neurodegeneration is accelerated in this patient cohort. Discussion: In conclusion, the results of this study show that the brain age gap is a valuable surrogate biomarker to measure disease progression in patients with multiple sclerosis [ABSTRACT FROM AUTHOR]
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- 2024
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22. Cells and Molecules Underpinning Cannabis-Related Variations in Cortical Thickness during Adolescence.
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Navarri, Xavier, Robertson, Derek N., Charfi, Iness, Wünnemann, Florian, Fernandes do Nascimento, Antônia Sâmia, Trottier, Giacomo, Leclerc, Sévérine, Andelfinger, Gregor U., Di Cristo, Graziella, Richer, Louis, Pike, G. Bruce, Pausova, Zdenka, Piñeyro, Graciela, and Paus, Tomáš
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BRAIN cortical thickness ,MAGNETIC resonance imaging ,GENE expression ,TEENAGE boys ,FRONTAL lobe ,ADOLESCENCE - Abstract
During adolescence, cannabis experimentation is common, and its association with interindividual variations in brain maturation well studied. Cellular and molecular underpinnings of these system-level relationships are, however, unclear. We thus conducted a three-step study. First, we exposed adolescent male mice to Δ-9-tetrahydrocannabinol (THC) or a synthetic cannabinoid WIN 55,212-2 (WIN) and assessed differentially expressed genes (DEGs), spine numbers, and dendritic complexity in their frontal cortex. Second, in human (male) adolescents, we examined group differences in cortical thickness in 34 brain regions, using magnetic resonance imaging, between those who experimented with cannabis before age 16 (n = 140) and those who did not (n = 327). Finally, we correlated spatially these group differences with gene expression of human homologs of mouse-identified DEGs. The spatial expression of 13 THC-related human homologs of DEGs correlated with cannabis-related variations in cortical thickness, and virtual histology revealed coexpression patterns of these 13 genes with cell-specific markers of astrocytes, microglia, and a type of pyramidal cells enriched in dendrite-regulating genes. Similarly, the spatial expression of 18 WIN-related human homologs of DEGs correlated with group differences in cortical thickness and showed coexpression patterns with the same three cell types. Gene ontology analysis indicated that 37 THC-related human homologs are enriched in neuron projection development, while 33 WIN-related homologs are enriched in processes associated with learning and memory. In mice, we observed spine loss and lower dendritic complexity in pyramidal cells of THC-exposed animals (vs controls). Experimentation with cannabis during adolescence may influence cortical thickness by impacting glutamatergic synapses and dendritic arborization. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Neuropsychiatric symptoms: Risk factor or disease marker? A study of structural imaging biomarkers of Alzheimer's disease and incident cognitive decline.
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Guan, Dylan X., Rehman, Tanaeem, Nathan, Santhosh, Durrani, Romella, Potvin, Olivier, Duchesne, Simon, Pike, G. Bruce, Smith, Eric E., and Ismail, Zahinoor
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DISEASE risk factors ,ALZHEIMER'S disease ,MAGNETIC resonance imaging ,ENTORHINAL cortex ,COGNITION disorders - Abstract
Neuropsychiatric symptoms (NPS) are risk factors for Alzheimer's disease (AD) but can also manifest secondary to AD pathology. Mild behavioral impairment (MBI) refers to later‐life emergent and persistent NPS that may mark early‐stage AD. To distinguish MBI from NPS that are transient or which represent psychiatric conditions (non‐MBI NPS), we investigated the effect of applying MBI criteria on NPS associations with AD structural imaging biomarkers and incident cognitive decline. Data for participants (n = 1273) with normal cognition (NC) or mild cognitive impairment (MCI) in the National Alzheimer's Coordinating Center Uniform Data Set were analyzed. NPS status (MBI, non‐MBI NPS) was derived from the Neuropsychiatric Inventory Questionnaire and psychiatric history. Normalized measures of bilateral hippocampal (HPC) and entorhinal cortex (EC) volume, and AD meta‐region of interest (ROI) mean cortical thickness were acquired from T1‐weighted magnetic resonance imaging scans. Multivariable linear and Cox regressions examined NPS associations with imaging biomarkers and incident cognitive decline, respectively. MBI was associated with lower volume and cortical thickness in all ROIs in both NC and MCI, except for EC volume in NC. Non‐MBI NPS were only associated with lower HPC volume in NC. Although both of the NPS groups showed higher hazards for MCI/dementia than No NPS, MBI participants showed more rapid decline. Although both types of NPS were linked to HPC atrophy, only NPS that emerged and persisted in later‐life, consistent with MBI criteria, were related to AD neurodegenerative patterns beyond the HPC. Moreover, MBI predicted faster progression to dementia than non‐MBI NPS. [ABSTRACT FROM AUTHOR]
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- 2024
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24. The effect of Transcranial Ultrasound Pulse Repetition Frequency on Sustained Inhibition in the Human Primary Motor Cortex: A Double-Blind, Sham-Controlled Study
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K.Zadeh, Ali, primary, Raghuram, Hrishikesh, additional, Shrestha, Shirshak, additional, Kibreab, Mekale, additional, Kathol, Iris, additional, Martino, Davide, additional, Pike, G. Bruce, additional, Pichardo, Samuel, additional, and Monchi, Oury, additional
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- 2024
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25. Ultrasound and neuroinflammation: immune modulation via the heat shock response
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Seasons, Graham M., primary, Pellow, Carly, additional, Kuipers, Hedwich F., additional, and Pike, G. Bruce, additional
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- 2024
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26. The Brain in Motion II Study: study protocol for a randomized controlled trial of an aerobic exercise intervention for older adults at increased risk of dementia
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Krüger, Renata L., Clark, Cameron M., Dyck, Adrienna M., Anderson, Todd J., Clement, Fiona, Hanly, Patrick J., Hanson, Heather M., Hill, Michael D., Hogan, David B., Holroyd-Leduc, Jayna, Longman, R. Stewart, McDonough, Meghan, Pike, G. Bruce, Rawling, Jean M., Sajobi, Tolulope, and Poulin, Marc J.
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- 2021
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27. Maternal cigarette smoking during pregnancy predicts drug use via externalizing behavior in two community‐based samples of adolescents
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Lotfipour, Shahrdad, Ferguson, Eamonn, Leonard, Gabriel, Miettunen, Jouko, Perron, Michel, Pike, G Bruce, Richer, Louis, Séguin, Jean R, Veillette, Suzanne, Jarvelin, Marjo‐Riitta, Moilanen, Irma, Mäki, Pirjo, Nordström, Tanja, Pausova, Zdenka, Veijola, Juha, and Paus, Tomáš
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Clinical and Health Psychology ,Public Health ,Health Sciences ,Psychology ,Clinical Research ,Prevention ,Social Determinants of Health ,Behavioral and Social Science ,Tobacco ,Drug Abuse (NIDA only) ,Conditions Affecting the Embryonic and Fetal Periods ,Violence Research ,Youth Violence ,Substance Misuse ,Tobacco Smoke and Health ,Women's Health ,Pediatric ,Pregnancy ,Perinatal Period - Conditions Originating in Perinatal Period ,2.2 Factors relating to the physical environment ,Good Health and Well Being ,Adolescent ,Adolescent Behavior ,Canada ,Child ,Cross-Sectional Studies ,Female ,Finland ,Humans ,Internal-External Control ,Male ,Prenatal Exposure Delayed Effects ,Risk Factors ,Smoking ,Substance-Related Disorders ,Addiction ,adolescence ,attention deficit hyperactivity disorder ,drug experimentation ,externalizing behavior ,maternal smoking ,tobacco exposure ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Substance Abuse ,Public health ,Clinical and health psychology - Abstract
Background and aimsPrenatal exposure to maternal cigarette smoking (PEMCS) is associated with a higher probability of substance use in adolescence. We explore if externalizing behavior mediates this relationship, while controlling for a number of potential covariates of this mediation process.MethodsWe used data obtained in two geographically distinct community samples of adolescents. The first (cross-sectional) sample consisted of 996 adolescents (12-18 years of age) recruited from the Saguenay Youth Study (SYS) in Canada (47% with PEMCS). The second (longitudinal) sample consisted of 1141 adolescents (49% with PEMCS) from the Northern Finland Birth Cohort (NFBC1986). In both samples, externalizing behavior and substance use were assessed during adolescence. In the NFBC1986 cohort, externalizing behavior was also assessed in childhood.ResultsIn both populations, PEMCS is associated with a higher likelihood of adolescent drug experimentation. In the NFBC1986 cohort, exposed (versus non-exposed) adolescents experiment with an extra 1.27 [B = 0.24, 95% confidence intervals (CI) = 0.15, 0.33 P
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- 2014
28. The human brain connectome weighted by the myelin content and total intra-axonal cross-sectional area of white matter tracts
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Nelson, Mark C., primary, Royer, Jessica, additional, Lu, Wen Da, additional, Leppert, Ilana R., additional, Campbell, Jennifer S. W., additional, Schiavi, Simona, additional, Jin, Hyerang, additional, Tavakol, Shahin, additional, Vos de Wael, Reinder, additional, Rodriguez-Cruces, Raul, additional, Pike, G. Bruce, additional, Bernhardt, Boris C., additional, Daducci, Alessandro, additional, Misic, Bratislav, additional, and Tardif, Christine L., additional
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- 2023
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29. Persistence of neuropsychiatric symptoms and dementia prognostication: A comparison of three operational case definitions of mild behavioral impairment
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Guan, Dylan X., primary, Smith, Eric E., additional, Pike, G. Bruce, additional, and Ismail, Zahinoor, additional
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- 2023
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30. Image-encoded biological and non-biological variables may be used as shortcuts in deep learning models trained on multisite neuroimaging data
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Souza, Raissa, primary, Wilms, Matthias, additional, Camacho, Milton, additional, Pike, G Bruce, additional, Camicioli, Richard, additional, Monchi, Oury, additional, and Forkert, Nils D, additional
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- 2023
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31. Dual-encoded magnetization transfer and diffusion imaging and its application to tract-specific microstructure mapping
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Leppert, Ilana R., primary, Bontempi, Pietro, additional, Rowley, Christopher D., additional, Campbell, Jennifer S.W., additional, Nelson, Mark C., additional, Schiavi, Simona, additional, Pike, G. Bruce, additional, Daducci, Alessandro, additional, and Tardif, Christine L., additional
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- 2023
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32. Genetic variants for head size share genes and pathways with cancer
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Amouyel, Philippe, Arfanakis, Konstantinos, Aribisala, Benjamin S., Bastin, Mark E., Chauhan, Ganesh, Chen, Christopher, Cheng, Ching-Yu, de Jager, Philip L., Deary, Ian J., Fleischman, Debra A., Gottesman, Rebecca F., Gudnason, Vilmundur, Hilal, Saima, Hofer, Edith, Janowitz, Deborah, Jukema, J. Wouter, Liewald, David C.M., Lopez, Lorna M., Lopez, Oscar, Luciano, Michelle, Martinez, Oliver, Niessen, Wiro J., Nyquist, Paul, Rotter, Jerome I., Rundek, Tatjana, Sacco, Ralph L., Schmidt, Helena, Tiemeier, Henning, Trompet, Stella, van der Grond, Jeroen, Völzke, Henry, Wardlaw, Joanna M., Yanek, Lisa, Yang, Jingyun, Agartz, Ingrid, Alhusaini, Saud, Almasy, Laura, Ames, David, Amunts, Katrin, Andreassen, Ole A., Armstrong, Nicola, Bernard, Manon, Blangero, John, Blanken, Laura M.E., Boks, Marco P., Boomsma, Dorret I., Brickman, Adam M., Brodaty, Henry, Buckner, Randy L., Buitelaar, Jan K., Cannon, Dara M., Carr, Vaughan J., Catts, Stanley V., Chakravarty, M. Mallar, Chen, Qiang, Ching, Christopher R.K., Corvin, Aiden, Crespo-Facorro, Benedicto, Curran, Joanne E., Davies, Gareth E., de Geus, Eco J.C., de Zubicaray, Greig I., den Braber, Anouk, Desrivières, Sylvane, Dillman, Allissa, Djurovic, Srdjan, Drevets, Wayne C., Duggirala, Ravi, Ehrlich, Stefan, Erk, Susanne, Espeseth, Thomas, Fedko, Iryna O., Fernández, Guillén, Fisher, Simon E., Foroud, Tatiana M., Ge, Tian, Giddaluru, Sudheer, Glahn, David C., Goldman, Aaron L., Green, Robert C., Greven, Corina U., Grimm, Oliver, Hansell, Narelle K., Hartman, Catharina A., Hashimoto, Ryota, Heinz, Andreas, Henskens, Frans, Hibar, Derrek P., Ho, Beng-Choon, Hoekstra, Pieter J., Holmes, Avram J., Hoogman, Martine, Hottenga, Jouke-Jan, Hulshoff Pol, Hilleke E., Jablensky, Assen, Jenkinson, Mark, Jia, Tianye, Jöckel, Karl-Heinz, Jönsson, Erik G., Kim, Sungeun, Klein, Marieke, Kochunov, Peter, Kwok, John B., Lawrie, Stephen M., Le Hellard, Stephanie, Lemaître, Hervé, Loughland, Carmel, Marquand, Andre F., Martin, Nicholas G., Martinot, Jean-Luc, Matarin, Mar, Mathalon, Daniel H., Mather, Karen A., Mattay, Venkata S., McDonald, Colm, McMahon, Francis J., McMahon, Katie L., E, Rebekah, McWhirter, Mecocci, Patrizia, Melle, Ingrid, Meyer-Lindenberg, Andreas, Michie, Patricia T., Milaneschi, Yuri, Morris, Derek W., Mowry, Bryan, Nho, Kwangsik, Nichols, Thomas E., Nöthen, Markus N., Olvera, Rene L., Oosterlaan, Jaap, Ophoff, Roel A., Pandolfo, Massimo, Pantelis, Christos, Pappa, Irene, Penninx, Brenda, Pike, G. Bruce, Rasser, Paul E., Rentería, Miguel E., Reppermund, Simone, Rietschel, Marcella, Risacher, Shannon L., Romanczuk-Seiferth, Nina, Rose, Emma Jane, Sachdev, Perminder S., Sämann, Philipp G., Saykin, Andrew J., Schall, Ulrich, Schofield, Peter R., Schramm, Sara, Schumann, Gunter, Scott, Rodney, Shen, Li, Sisodiya, Sanjay M., Soininen, Hilkka, Sprooten, Emma, Srikanth, Velandai, Steen, Vidar M., Strike, Lachlan T., Thalamuthu, Anbupalam, Toga, Arthur W., Tooney, Paul, Tordesillas-Gutiérrez, Diana, Turner, Jessica A., Valdés Hernández, Maria del C., van der Meer, Dennis, Van der Wee, Nic J.A., Van Haren, Neeltje E.M., van 't Ent, Dennis, Veltman, Dick J., Walter, Henrik, Weinberger, Daniel R., Weiner, Michael W., Wen, Wei, Westlye, Lars T., Westman, Eric, Winkler, Anderson M., Woldehawariat, Girma, Wright, Margaret J., Wu, Jingqin, Knol, Maria J., Poot, Raymond A., Evans, Tavia E., Satizabal, Claudia L., Mishra, Aniket, Sargurupremraj, Muralidharan, van der Auwera, Sandra, Duperron, Marie-Gabrielle, Jian, Xueqiu, Hostettler, Isabel C., van Dam-Nolen, Dianne H.K., Lamballais, Sander, Pawlak, Mikolaj A., Lewis, Cora E., Carrion-Castillo, Amaia, van Erp, Theo G.M., Reinbold, Céline S., Shin, Jean, Scholz, Markus, Håberg, Asta K., Kämpe, Anders, Li, Gloria H.Y., Avinun, Reut, Atkins, Joshua R., Hsu, Fang-Chi, Amod, Alyssa R., Lam, Max, Tsuchida, Ami, Teunissen, Mariël W.A., Aygün, Nil, Patel, Yash, Liang, Dan, Beiser, Alexa S., Beyer, Frauke, Bis, Joshua C., Bos, Daniel, Bryan, R. Nick, Bülow, Robin, Caspers, Svenja, Catheline, Gwenaëlle, Cecil, Charlotte A.M., Dalvie, Shareefa, Dartigues, Jean-François, DeCarli, Charles, Enlund-Cerullo, Maria, Ford, Judith M., Franke, Barbara, Freedman, Barry I., Friedrich, Nele, Green, Melissa J., Haworth, Simon, Helmer, Catherine, Hoffmann, Per, Homuth, Georg, Ikram, M. Kamran, Jack, Clifford R., Jr., Jahanshad, Neda, Jockwitz, Christiane, Kamatani, Yoichiro, Knodt, Annchen R., Li, Shuo, Lim, Keane, Longstreth, W.T., Macciardi, Fabio, Mäkitie, Outi, Mazoyer, Bernard, Medland, Sarah E., Miyamoto, Susumu, Moebus, Susanne, Mosley, Thomas H., Muetzel, Ryan, Mühleisen, Thomas W., Nagata, Manabu, Nakahara, Soichiro, Palmer, Nicholette D., Pausova, Zdenka, Preda, Adrian, Quidé, Yann, Reay, William R., Roshchupkin, Gennady V., Schmidt, Reinhold, Schreiner, Pamela J., Setoh, Kazuya, Shapland, Chin Yang, Sidney, Stephen, St Pourcain, Beate, Stein, Jason L., Tabara, Yasuharu, Teumer, Alexander, Uhlmann, Anne, van der Lugt, Aad, Vernooij, Meike W., Werring, David J., Windham, B. Gwen, Witte, A. Veronica, Wittfeld, Katharina, Yang, Qiong, Yoshida, Kazumichi, Brunner, Han G., Le Grand, Quentin, Sim, Kang, Stein, Dan J., Bowden, Donald W., Cairns, Murray J., Hariri, Ahmad R., Cheung, Ching-Lung, Andersson, Sture, Villringer, Arno, Paus, Tomas, Cichon, Sven, Calhoun, Vince D., Crivello, Fabrice, Launer, Lenore J., White, Tonya, Koudstaal, Peter J., Houlden, Henry, Fornage, Myriam, Matsuda, Fumihiko, Grabe, Hans J., Ikram, M. Arfan, Debette, Stéphanie, Thompson, Paul M., Seshadri, Sudha, and Adams, Hieab H.H.
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- 2024
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33. Distinct characteristics and severity of brain magnetic resonance imaging lesions in women and men with multiple sclerosis assessed using verified texture analysis measures
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Hosseinpour, Zahra, primary, Oladosu, Olayinka, additional, Liu, Wei-qiao, additional, Pike, G. Bruce, additional, Yong, V. Wee, additional, Metz, Luanne M., additional, and Zhang, Yunyan, additional
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- 2023
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34. CEREBROVASCULAR REACTIVITY IN CEREBRAL AMYLOID ANGIOPATHY
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Beaudin, Andrew E., McCreary, Cheryl R., Mazerolle, Erin L., Gee, Myrlene, Sharma, Breni, Subotic, Arsenije, Zwiers, Angela, Cox, Emily, Nelles, Krista, Charlton, Anna, Frayne, Richard, Ismail, Zahinoor, Beaulieu, Christian, Jickling, Glen C., Camicioli, Richard, Pike, G. Bruce, and Smith, Eric E.
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- 2024
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35. Linear Coupling between Cerebral Blood Flow and Oxygen Consumption in Activated Human Cortex
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Hoge, Richard D., Atkinson, Jeff, Gill, Brad, Crelier, Gérard R., Marrett, Sean, and Pike, G. Bruce
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- 1999
36. Correspondence between BOLD fMRI task response and cerebrovascular reactivity across the cerebral cortex
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Williams, Rebecca J., primary, Specht, Jacinta L., additional, Mazerolle, Erin L., additional, Lebel, R. Marc, additional, MacDonald, M. Ethan, additional, and Pike, G. Bruce, additional
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- 2023
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37. Subcortical volumes in cerebral amyloid angiopathy compared with Alzheimer’s disease and controls
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Chen, Chih-Hao, primary, Khnaijer, Mary Klir, additional, Beaudin, Andrew E., additional, McCreary, Cheryl R., additional, Gee, Myrlene, additional, Saad, Feryal, additional, Frayne, Richard, additional, Ismail, Zahinoor, additional, Pike, G. Bruce, additional, Camicioli, Richard, additional, and Smith, Eric E., additional
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- 2023
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38. A biologically informed polygenic score of neuronal plasticity moderates the association between cognitive aptitudes and cortical thickness in adolescents
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Navarri, Xavier, primary, Vosberg, Daniel E., additional, Shin, Jean, additional, Richer, Louis, additional, Leonard, Gabriel, additional, Pike, G. Bruce, additional, Banaschewski, Tobias, additional, Bokde, Arun L.W., additional, Desrivières, Sylvane, additional, Flor, Herta, additional, Grigis, Antoine, additional, Garavan, Hugh, additional, Gowland, Penny, additional, Heinz, Andreas, additional, Brühl, Rüdiger, additional, Martinot, Jean-Luc, additional, Martinot, Marie-Laure Paillère, additional, Artiges, Eric, additional, Nees, Frauke, additional, Orfanos, Dimitri Papadopoulos, additional, Poustka, Luise, additional, Hohmann, Sarah, additional, Fröhner, Juliane H., additional, Smolka, Michael N., additional, Vaidya, Nilakshi, additional, Walter, Henrik, additional, Whelan, Robert, additional, Schumann, Gunter, additional, Pausova, Zdenka, additional, and Paus, Tomáš, additional
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- 2023
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39. A biologically informed polygenic score of neuronal plasticity moderates the association between cognitive aptitudes and cortical thickness in adolescents
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Navarri, Xavier, Vosberg, Daniel E., Shin, Jean, Richer, Louis, Leonard, Gabriel, Pike, G. Bruce, Banaschewski, Tobias, Bokde, Arun L.W., Desrivières, Sylvane, Flor, Herta, Grigis, Antoine, Garavan, Hugh, Gowland, Penny, Heinz, Andreas, Brühl, Rüdiger, Martinot, Jean-Luc, Paillère Martinot, Marie-Laure, Artiges, Eric, Nees, Frauke, Orfanos, Dimitri Papadopoulos, Poustka, Luise, Hohmann, Sarah, Fröhner, Juliane H., Smolka, Michael N., Vaidya, Nilakshi, Walter, Henrik, Whelan, Robert, Schumann, Gunter, Pausova, Zdenka, Paus, Tomáš, Navarri, Xavier, Vosberg, Daniel E., Shin, Jean, Richer, Louis, Leonard, Gabriel, Pike, G. Bruce, Banaschewski, Tobias, Bokde, Arun L.W., Desrivières, Sylvane, Flor, Herta, Grigis, Antoine, Garavan, Hugh, Gowland, Penny, Heinz, Andreas, Brühl, Rüdiger, Martinot, Jean-Luc, Paillère Martinot, Marie-Laure, Artiges, Eric, Nees, Frauke, Orfanos, Dimitri Papadopoulos, Poustka, Luise, Hohmann, Sarah, Fröhner, Juliane H., Smolka, Michael N., Vaidya, Nilakshi, Walter, Henrik, Whelan, Robert, Schumann, Gunter, Pausova, Zdenka, and Paus, Tomáš
- Abstract
Although many studies of the adolescent brain identified positive associations between cognitive abilities and cortical thickness, little is known about mechanisms underlying such brain-behavior relationships. With experience-induced plasticity playing an important role in shaping the cerebral cortex throughout life, it is likely that some of the inter-individual variations in cortical thickness could be explained by genetic variations in relevant molecular processes, as indexed by a polygenic score of neuronal plasticity (PGS-NP). Here, we studied associations between PGS-NP, cognitive abilities, and thickness of the cerebral cortex, estimated from magnetic resonance images, in the Saguenay Youth Study (SYS, 533 females, 496 males: age=15.0 ± 1.8 years of age; cross-sectional), and the IMAGEN Study (566 females, 556 males; between 14 and 19 years; longitudinal). Using Gene Ontology, we first identified 199 genes implicated in neuronal plasticity, which mapped to 155,600 single nucleotide polymorphisms (SNPs). Second, we estimated their effect sizes from an educational attainment meta-GWAS to build a PGS-NP. Third, we examined a possible moderating role of PGS-NP in the relationship between performance intelligence quotient (PIQ), and its subtests, and the thickness of 34 cortical regions. In SYS, we observed a significant interaction between PGS-NP and object assembly vis-à-vis thickness in male adolescents (p = 0.026). A median-split analysis showed that, in males with a ‘high’ PGS-NP, stronger associations between object assembly and thickness were found in regions with larger age-related changes in thickness (r = 0.55, p = 0.00075). Although the interaction between PIQ and PGS-NP was non-significant (p = 0.064), we performed a similar median-split analysis. Again, in the high PGS-NP males, positive associations between PIQ and thickness were observed in regions with larger age-related changes in thickness (r = 0.40, p = 0.018). In the IMAGEN cohort, we did not r
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- 2023
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40. The Unresolved Methodological Challenge of Detecting Neuroplastic Changes in Astronauts
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Burles, Ford, primary, Williams, Rebecca, additional, Berger, Lila, additional, Pike, G. Bruce, additional, Lebel, Catherine, additional, and Iaria, Giuseppe, additional
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- 2023
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41. Relevance of transcranial modeling in the planning of neurostimulation with low intensity focused ultrasound for deep targets
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Pichardo, Samuel, primary, Nankoo, Jean-Francois, additional, Zadeh, Ali K., additional, Darmani, Ghazaleh, additional, Martino, Davide, additional, Monchi, Oury, additional, Chen, Robert, additional, and Pike, G. Bruce, additional
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- 2023
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42. Detecting monocyte trafficking in an animal model of glioblastoma using R2* and quantitative susceptibility mapping
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Yang, Runze, primary, Hamilton, A. Max, additional, Sun, Hongfu, additional, Rawji, Khalil S., additional, Sarkar, Susobhan, additional, Mirzaei, Reza, additional, Pike, G. Bruce, additional, Yong, V. Wee., additional, and Dunn, Jeff F., additional
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- 2022
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43. Permanent tissue damage in multiple sclerosis lesions is associated with reduced pre-lesion myelin and axon volume fractions
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Tagge, Ian J., Leppert, Ilana R., Fetco, Dumitru, Campbell, Jennifer S. W., Rudko, David A., Brown, Robert A., Stikov, Nikola, Pike, G. Bruce, Giacomini, Paul S., Arnold, Douglas L., Narayanan, Sridar, Tagge, Ian J., Leppert, Ilana R., Fetco, Dumitru, Campbell, Jennifer S. W., Rudko, David A., Brown, Robert A., Stikov, Nikola, Pike, G. Bruce, Giacomini, Paul S., Arnold, Douglas L., and Narayanan, Sridar
- Abstract
Background: The use of advanced magnetic resonance imaging (MRI) techniques in MS research has led to new insights in lesion evolution and disease outcomes. It has not yet been determined if, or how, pre-lesional abnormalities in normal-appearing white matter (NAWM) relate to the long-term evolution of new lesions. Objective: To investigate the relationship between abnormalities in MRI measures of axonal and myelin volume fractions (AVF and MVF) in NAWM preceding development of black-hole (BH) and non-BH lesions in people with MS. Methods: We obtained magnetization transfer and diffusion MRI at 6-month intervals in patients with MS to estimate MVF and AVF during lesion evolution. Lesions were classified as either BH or non-BH on the final imaging visit using T1 maps. Results: Longitudinal data from 97 new T2 lesions from 9 participants were analyzed; 25 lesions in 8 participants were classified as BH 6–12 months after initial appearance. Pre-lesion MVF, AVF, and MVF/AVF were significantly lower, and T1 was significantly higher, in the lesions that later became BHs (p < 0.001) compared to those that did not. No significant pre-lesion abnormalities were found in non-BH lesions (p > 0.05). Conclusion: The present work demonstrated that pre-lesion abnormalities are associated with worse long-term lesion-level outcome.
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- 2022
44. Identification of neurovascular changes associated with cerebral amyloid angiopathy from subject-specific hemodynamic response functions
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Williams, Rebecca J, Goodyear, Bradley G, Peca, Stefano, McCreary, Cheryl R, Frayne, Richard, Smith, Eric E, and Pike, G Bruce
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- 2017
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45. Subcortical volumes in cerebral amyloid angiopathy compared with Alzheimer's disease and controls.
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Chih-Hao Chen, Khnaijer, Mary Klir, Beaudin, Andrew E., McCreary, Cheryl R., Gee, Myrlene, Saad, Feryal, Frayne, Richard, Ismail, Zahinoor, Pike, G. Bruce, Camicioli, Richard, and Smith, Eric E.
- Subjects
CEREBRAL amyloid angiopathy ,ALZHEIMER'S disease ,WHITE matter (Nerve tissue) ,CEREBELLAR cortex ,ALZHEIMER'S patients ,GLOBUS pallidus - Abstract
Background: Previous reports have suggested that patients with cerebral amyloid angiopathy (CAA) may harbor smaller white matter, basal ganglia, and cerebellar volumes compared to age-matched healthy controls (HC) or patients with Alzheimer's disease (AD). We investigated whether CAA is associated with subcortical atrophy. Methods: The study was based on the multi-site Functional Assessment of Vascular Reactivity cohort and included 78 probable CAA (diagnosed according to the Boston criteria v2.0), 33 AD, and 70 HC. Cerebral and cerebellar volumes were extracted from brain 3D T1-weighted MRI using FreeSurfer (v6.0). Subcortical volumes, including total white matter, thalamus, basal ganglia, and cerebellum were reported as proportion (%) of estimated total intracranial volume. White matter integrity was quantified by the peak width of skeletonized mean diffusivity. Results: Participants in the CAA group were older (74.0 ± 7.0, female 44%) than the AD (69.7 ± 7.5, female 42%) and HC (68.8 ± 7.8, female 69%) groups. CAA participants had the highest white matter hyperintensity volume and worse white matter integrity of the three groups. After adjusting for age, sex, and study site, CAA participants had smaller putamen volumes (mean differences, -0.024% of intracranial volume; 95% confidence intervals, -0.041% to -0.006%; p = 0.005) than the HCs but not AD participants (-0.003%; -0.024 to 0.018%; p = 0.94). Other subcortical volumes including subcortical white matter, thalamus, caudate, globus pallidus, cerebellar cortex or cerebellar white matter were comparable between all three groups. Conclusion: In contrast to prior studies, we did not find substantial atrophy of subcortical volumes in CAA compared to AD or HCs, except for the putamen. Differences between studies may reflect heterogeneity in CAA presenting syndromes or severity. [ABSTRACT FROM AUTHOR]
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- 2023
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46. Detecting monocyte trafficking in an animal model of glioblastoma using R2* and quantitative susceptibility mapping.
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Yang, Runze, Hamilton, A. Max, Sun, Hongfu, Rawji, Khalil S., Sarkar, Susobhan, Mirzaei, Reza, Pike, G. Bruce, Yong, V. Wee., and Dunn, Jeff F.
- Subjects
IRON oxide nanoparticles ,CD14 antigen ,GLIOBLASTOMA multiforme ,FERRIC oxide ,ANIMAL models in research ,NATURAL immunity - Abstract
Background: The role of tumor-associated macrophages (TAMs) in glioblastoma (GBM) disease progression has received increasing attention. Recent advances have shown that TAMs can be re-programmed to exert a pro-inflammatory, anti-tumor effect to control GBMs. However, imaging methods capable of differentiating tumor progression from immunotherapy treatment effects have been lacking, making timely assessment of treatment response difficult. We showed that tracking monocytes using iron oxide nanoparticle (USPIO) with MRI can be a sensitive imaging method to detect therapy response directed at the innate immune system. Methods: We implanted syngeneic mouse glioma stem cells into C57/BL6 mice and treated the animals with either niacin (a stimulator of innate immunity) or vehicle. Animals were imaged using an anatomical MRI sequence, R
2 * mapping, and quantitative susceptibility mapping (QSM) before and after USPIO injection. Results: Compared to vehicles, niacin-treated animals showed significantly higher susceptibility and R2 * , representing USPIO and monocyte infiltration into the tumor. We observed a significant reduction in tumor size in the niacin-treated group 7 days later. We validated our MRI results with flow cytometry and immunofluoresence, which showed that niacin decreased pro-inflammatory Ly6C high monocytes in the blood but increased CD16/32 pro-inflammatory macrophages within the tumor, consistent with migration of these pro-inflammatory innate immune cells from the blood to the tumor. Conclusion: MRI with USPIO injection can detect therapeutic responses of innate immune stimulating agents before changes in tumor size have occurred, providing a potential complementary imaging technique to monitor cancer immunotherapies. Manuscript highlight: We show that iron oxide nanoparticles (USPIOs) can be used to label innate immune cells and detect the trafficking of pro-inflammatory monocytes into the glioblastoma. This preceded changes in tumor size, making it a more sensitive imaging technique. [ABSTRACT FROM AUTHOR]- Published
- 2023
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47. Accelerating quantitative susceptibility and R2* mapping using incoherent undersampling and deep neural network reconstruction
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Gao, Yang, primary, Cloos, Martijn, additional, Liu, Feng, additional, Crozier, Stuart, additional, Pike, G. Bruce, additional, and Sun, Hongfu, additional
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- 2021
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48. Early post‐treatment blood oxygenation level‐dependent responses to emotion processing associated with clinical response to pharmacological treatment in major depressive disorder
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Williams, Rebecca J., primary, Brown, Elliot C., additional, Clark, Darren L., additional, Pike, G. Bruce, additional, and Ramasubbu, Rajamannar, additional
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- 2021
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49. Effects of copy number variations on brain structure and risk for psychiatric illness: Large-scale studies from the ENIGMA working groups on CNVs
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Sønderby, Ida E, Ching, Christopher R K, Ayesa-Arriola, Rosa, Thompson, Paul M, Bearden, Carrie E, Andreassen, Ole A, Group, ENIGMA-CNV Working, 2 Deletion Syndrome Working Group, ENIGMA 22q11., Bernard, Manon, Blackburn, Nicholas B, Bøen, Rune, de Geus, Eco, de Zwarte, Sonja M C, Bakker, Geor, Forti, Marta Di, Frei, Oleksandr, Fukunaga, Masaki, Hehir-Kwa, Jayne Y, Hillegers, Manon H J, Hoffmann, Per, Homuth, Georg, Jahanshad, Neda, Koops, Sanne, Kumar, Kuldeep, Bassett, Anne S, Kikuchi, Masataka, Le Hellard, Stephanie, Leu, Costin, Murray, Robin M, Naerland, Terje, Nyberg, Lars, Ophoff, Roel A, Pike, G Bruce, Sando, Sigrid B, Shin, Jean, Boomsma, Dorret I, Shumskaya, Elena, Sisodiya, Sanjay M, Steen, Vidar M, Teumer, Alexander, Uhlmann, Anne, Wright, Margaret J, Antshel, Kevin M, Campbell, Linda E, Crossley, Nicolas A, Crowley, T Blaine, Bülow, Robin, Daly, Eileen, Fiksinski, Ania M, Forsyth, Jennifer K, Fremont, Wanda, Goodrich-Hunsaker, Naomi J, Gudbrandsen, Maria, Jonas, Rachel K, Kates, Wendy R, Lin, Amy, McCabe, Kathryn L, Butcher, Nancy J, Moss, Hayley, Murphy, Declan G, Murphy, Kieran C, Owen, Michael J, Ruparel, Kosha, Simon, Tony J, van Amelsvoort, Therese, Vorstman, Jacob A S, Calhoun, Vince D, Caspers, Svenja, Chow, Eva W C, Cichon, Sven, Thomopoulos, Sophia I, Ciufolini, Simone, Craig, Michael C, Crespo-Facorro, Benedicto, Cunningham, Adam C, Dale, Anders M, Dazzan, Paola, de Zubicaray, Greig I, Djurovic, Srdjan, Doherty, Joanne L, Donohoe, Gary, van der Meer, Dennis, Draganski, Bogdan, Durdle, Courtney A, Ehrlich, Stefan, Emanuel, Beverly S, Espeseth, Thomas, Fisher, Simon E, Ge, Tian, Glahn, David C, Grabe, Hans J, Gur, Raquel E, Sun, Daqiang, Gutman, Boris A, Haavik, Jan, Håberg, Asta K, Hansen, Laura A, Hashimoto, Ryota, Hibar, Derrek P, Holmes, Avram J, Hottenga, Jouke-Jan, Hulshoff Pol, Hilleke E, Jalbrzikowski, Maria, Villalon-Reina, Julio E, Knowles, Emma E M, Kushan, Leila, Linden, David E J, Liu, Jingyu, Lundervold, Astri J, Martin-Brevet, Sandra, Martínez, Kenia, Mather, Karen A, Mathias, Samuel R, McDonald-McGinn, Donna M, Agartz, Ingrid, McRae, Allan F, Medland, Sarah E, Moberget, Torgeir, Modenato, Claudia, Monereo Sánchez, Jennifer, Moreau, Clara A, Mühleisen, Thomas W, Paus, Tomas, Pausova, Zdenka, Prieto, Carlos, Amunts, Katrin, Ragothaman, Anjanibhargavi, Reinbold, Céline S, Reis Marques, Tiago, Repetto, Gabriela M, Reymond, Alexandre, Roalf, David R, Rodriguez-Herreros, Borja, Rucker, James J, Sachdev, Perminder S, Schmitt, James E, Arango, Celso, Schofield, Peter R, Silva, Ana I, Stefansson, Hreinn, Stein, Dan J, Tamnes, Christian K, Tordesillas-Gutiérrez, Diana, Ulfarsson, Magnus O, Vajdi, Ariana, van 't Ent, Dennis, van den Bree, Marianne B M, Armstrong, Nicola J, Vassos, Evangelos, Vázquez-Bourgon, Javier, Vila-Rodriguez, Fidel, Walters, G Bragi, Wen, Wei, Westlye, Lars T, Wittfeld, Katharina, Zackai, Elaine H, Stefánsson, Kári, Jacquemont, Sebastien, the ENIGMA-CNV Working Group, the ENIGMA 22q11.2 Deletion Syndrome Working Group, Stochastics, Biological Psychology, APH - Mental Health, APH - Methodology, APH - Personalized Medicine, APH - Health Behaviors & Chronic Diseases, ENIGMA-CNV Working Group, ENIGMA 22q11.2 Deletion Syndrome Working Group, and Universidad de Cantabria
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Review Article ,genetics [Mental Disorders] ,0302 clinical medicine ,genetics-first approach ,pathology [Brain] ,Multicenter Studies as Topic ,Copy-number variation ,Review Articles ,education.field_of_study ,brain structural imaging ,Radiological and Ultrasound Technology ,genetics [Neurodevelopmental Disorders] ,Mental Disorders ,neurodevelopmental disorders ,05 social sciences ,growth & development [Brain] ,Brain ,pathology [Mental Disorders] ,Cognition ,Human brain ,diffusion tensor imaging ,Magnetic Resonance Imaging ,diagnostic imaging [Neurodevelopmental Disorders] ,medicine.anatomical_structure ,psychiatric disorders ,Neurology ,Anatomy ,medicine.medical_specialty ,Brain development ,DNA Copy Number Variations ,Population ,Neuroimaging ,Biology ,050105 experimental psychology ,03 medical and health sciences ,evolution ,medicine ,pathology [Neurodevelopmental Disorders] ,Humans ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,Deletion syndrome ,copy number variant ,ddc:610 ,genetics‐first approach ,education ,Psychiatry ,diagnostic imaging [Brain] ,Neurology (clinical) ,Working group ,030217 neurology & neurosurgery ,diagnostic imaging [Mental Disorders] - Abstract
The Enhancing NeuroImaging Genetics through Meta‐Analysis copy number variant (ENIGMA‐CNV) and 22q11.2 Deletion Syndrome Working Groups (22q‐ENIGMA WGs) were created to gain insight into the involvement of genetic factors in human brain development and related cognitive, psychiatric and behavioral manifestations. To that end, the ENIGMA‐CNV WG has collated CNV and magnetic resonance imaging (MRI) data from ~49,000 individuals across 38 global research sites, yielding one of the largest studies to date on the effects of CNVs on brain structures in the general population. The 22q‐ENIGMA WG includes 12 international research centers that assessed over 533 individuals with a confirmed 22q11.2 deletion syndrome, 40 with 22q11.2 duplications, and 333 typically developing controls, creating the largest‐ever 22q11.2 CNV neuroimaging data set. In this review, we outline the ENIGMA infrastructure and procedures for multi‐site analysis of CNVs and MRI data. So far, ENIGMA has identified effects of the 22q11.2, 16p11.2 distal, 15q11.2, and 1q21.1 distal CNVs on subcortical and cortical brain structures. Each CNV is associated with differences in cognitive, neurodevelopmental and neuropsychiatric traits, with characteristic patterns of brain structural abnormalities. Evidence of gene‐dosage effects on distinct brain regions also emerged, providing further insight into genotype–phenotype relationships. Taken together, these results offer a more comprehensive picture of molecular mechanisms involved in typical and atypical brain development. This “genotype‐first” approach also contributes to our understanding of the etiopathogenesis of brain disorders. Finally, we outline future directions to better understand effects of CNVs on brain structure and behavior., The enhancing neuroimaging genetics through meta‐analysis (ENIGMA) copy number variant (CNV) and 22q11.2 Working Groups focus on gaining insight into how rare genetic variants affect human brain development, cognition, and behavior. The two ENIGMA working groups have collated CNV and brain‐imaging data from numerous individuals, gathered by numerous international research centers, and analyzed this data with standardized processing and analysis pipelines. Future directions for the ENIGMA CNV and 22q11.2 working groups are to analyze CNVs with larger sample sizes and more imaging modalities to better understand how rare genetic variants affect the brain, and their clinical and behavioral consequences.
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- 2021
50. 1q21.1 distal copy number variants are associated with cerebral and cognitive alterations in humans
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Sønderby, Ida E., van der Meer, Dennis, Moreau, Clara, Kaufmann, Tobias, Walters, G Bragi, Ellegaard, Maria, Abdellaoui, Abdel, Ames, David, Amunts, Katrin, Andersson, Micael, Armstrong, Nicola J., Bernard, Manon, Blackburn, Nicholas B., Blangero, John, Boomsma, Dorret I., Brodaty, Henry, Brouwer, Rachel M., Bülow, Robin, Bøen, Rune, Cahn, Wiepke, Calhoun, Vince D., Caspers, Svenja, Ching, Christopher R K, Cichon, Sven, Ciufolini, Simone, Crespo-Facorro, Benedicto, Curran, Joanne E., Dale, Anders M., Dalvie, Shareefa, Dazzan, Paola, de Geus, Eco J C, de Zubicaray, Greig I., de Zwarte, Sonja M C, Desrivieres, Sylvane, Doherty, Joanne L., Donohoe, Gary, Draganski, Bogdan, Ehrlich, Stefan, Eising, Else, Espeseth, Thomas, Fejgin, Kim, Fisher, Simon E., Fladby, Tormod, Frei, Oleksandr, Frouin, Vincent, Fukunaga, Masaki, Gareau, Thomas, Ge, Tian, Glahn, David C., Grabe, Hans J., Groenewold, Nynke A., Gústafsson, Ómar, Haavik, Jan, Haberg, Asta K., Hall, Jeremy, Hashimoto, Ryota, Hehir-Kwa, Jayne Y., Hibar, Derrek P., Hillegers, Manon H J, Hoffmann, Per, Holleran, Laurena, Holmes, Avram J., Homuth, Georg, Hottenga, Jouke-Jan, Hulshoff Pol, Hilleke E., Ikeda, Masashi, Jahanshad, Neda, Jockwitz, Christiane, Johansson, Stefan, Jönsson, Erik G., Jørgensen, Niklas R., Kikuchi, Masataka, Knowles, Emma E M, Kumar, Kuldeep, Le Hellard, Stephanie, Leu, Costin, Linden, David E J, Liu, Jingyu, Lundervold, Arvid, Lundervold, Astri Johansen, Maillard, Anne M., Martin, Nicholas G., Martin-Brevet, Sandra, Mather, Karen A., Mathias, Samuel R., McMahon, Katie L., McRae, Allan F., Medland, Sarah E., Meyer-Lindenberg, Andreas, Moberget, Torgeir, Modenato, Claudia, Sánchez, Jennifer Monereo, Morris, Derek W., Mühleisen, Thomas W., Murray, Robin M., Nielsen, Jacob, Nordvik, Jan E., Nyberg, Lars, Loohuis, Loes M Olde, Ophoff, Roel A., Owen, Michael J., Paus, Tomas, Pausova, Zdenka, Peralta, Juan M., Pike, G Bruce, Prieto, Carlos, Quinlan, Erin B., Reinbold, Céline S, Marques, Tiago Reis, Rucker, James J H, Sachdev, Perminder S., Sando, Sigrid B., Schofield, Peter R., Schork, Andrew J., Schumann, Gunter, Shin, Jean, Shumskaya, Elena, Silva, Ana I., Sisodiya, Sanjay M., Steen, Vidar M., Stein, Dan J., Strike, Lachlan T., Suzuki, Ikuo K., Tamnes, Christian K., Teumer, Alexander, Thalamuthu, Anbupalam, Tordesillas-Gutiérrez, Diana, Uhlmann, Anne, Ulfarsson, Magnus O., van 't Ent, Dennis, van den Bree, Marianne B M, Vanderhaeghen, Pierre, Vassos, Evangelos, Wen, Wei, Wittfeld, Katharina, Wright, Margaret J., Agartz, Ingrid, Djurovic, Srdjan, Westlye, Lars T., Stefansson, Hreinn, Stefansson, Kari, Jacquemont, Sébastien, Thompson, Paul M., Andreassen, Ole A., Sønderby, Ida E., van der Meer, Dennis, Moreau, Clara, Kaufmann, Tobias, Walters, G Bragi, Ellegaard, Maria, Abdellaoui, Abdel, Ames, David, Amunts, Katrin, Andersson, Micael, Armstrong, Nicola J., Bernard, Manon, Blackburn, Nicholas B., Blangero, John, Boomsma, Dorret I., Brodaty, Henry, Brouwer, Rachel M., Bülow, Robin, Bøen, Rune, Cahn, Wiepke, Calhoun, Vince D., Caspers, Svenja, Ching, Christopher R K, Cichon, Sven, Ciufolini, Simone, Crespo-Facorro, Benedicto, Curran, Joanne E., Dale, Anders M., Dalvie, Shareefa, Dazzan, Paola, de Geus, Eco J C, de Zubicaray, Greig I., de Zwarte, Sonja M C, Desrivieres, Sylvane, Doherty, Joanne L., Donohoe, Gary, Draganski, Bogdan, Ehrlich, Stefan, Eising, Else, Espeseth, Thomas, Fejgin, Kim, Fisher, Simon E., Fladby, Tormod, Frei, Oleksandr, Frouin, Vincent, Fukunaga, Masaki, Gareau, Thomas, Ge, Tian, Glahn, David C., Grabe, Hans J., Groenewold, Nynke A., Gústafsson, Ómar, Haavik, Jan, Haberg, Asta K., Hall, Jeremy, Hashimoto, Ryota, Hehir-Kwa, Jayne Y., Hibar, Derrek P., Hillegers, Manon H J, Hoffmann, Per, Holleran, Laurena, Holmes, Avram J., Homuth, Georg, Hottenga, Jouke-Jan, Hulshoff Pol, Hilleke E., Ikeda, Masashi, Jahanshad, Neda, Jockwitz, Christiane, Johansson, Stefan, Jönsson, Erik G., Jørgensen, Niklas R., Kikuchi, Masataka, Knowles, Emma E M, Kumar, Kuldeep, Le Hellard, Stephanie, Leu, Costin, Linden, David E J, Liu, Jingyu, Lundervold, Arvid, Lundervold, Astri Johansen, Maillard, Anne M., Martin, Nicholas G., Martin-Brevet, Sandra, Mather, Karen A., Mathias, Samuel R., McMahon, Katie L., McRae, Allan F., Medland, Sarah E., Meyer-Lindenberg, Andreas, Moberget, Torgeir, Modenato, Claudia, Sánchez, Jennifer Monereo, Morris, Derek W., Mühleisen, Thomas W., Murray, Robin M., Nielsen, Jacob, Nordvik, Jan E., Nyberg, Lars, Loohuis, Loes M Olde, Ophoff, Roel A., Owen, Michael J., Paus, Tomas, Pausova, Zdenka, Peralta, Juan M., Pike, G Bruce, Prieto, Carlos, Quinlan, Erin B., Reinbold, Céline S, Marques, Tiago Reis, Rucker, James J H, Sachdev, Perminder S., Sando, Sigrid B., Schofield, Peter R., Schork, Andrew J., Schumann, Gunter, Shin, Jean, Shumskaya, Elena, Silva, Ana I., Sisodiya, Sanjay M., Steen, Vidar M., Stein, Dan J., Strike, Lachlan T., Suzuki, Ikuo K., Tamnes, Christian K., Teumer, Alexander, Thalamuthu, Anbupalam, Tordesillas-Gutiérrez, Diana, Uhlmann, Anne, Ulfarsson, Magnus O., van 't Ent, Dennis, van den Bree, Marianne B M, Vanderhaeghen, Pierre, Vassos, Evangelos, Wen, Wei, Wittfeld, Katharina, Wright, Margaret J., Agartz, Ingrid, Djurovic, Srdjan, Westlye, Lars T., Stefansson, Hreinn, Stefansson, Kari, Jacquemont, Sébastien, Thompson, Paul M., and Andreassen, Ole A.
- Abstract
Low-frequency 1q21.1 distal deletion and duplication copy number variant (CNV) carriers are predisposed to multiple neurodevelopmental disorders, including schizophrenia, autism and intellectual disability. Human carriers display a high prevalence of micro- and macrocephaly in deletion and duplication carriers, respectively. The underlying brain structural diversity remains largely unknown. We systematically called CNVs in 38 cohorts from the large-scale ENIGMA-CNV collaboration and the UK Biobank and identified 28 1q21.1 distal deletion and 22 duplication carriers and 37,088 non-carriers (48% male) derived from 15 distinct magnetic resonance imaging scanner sites. With standardized methods, we compared subcortical and cortical brain measures (all) and cognitive performance (UK Biobank only) between carrier groups also testing for mediation of brain structure on cognition. We identified positive dosage effects of copy number on intracranial volume (ICV) and total cortical surface area, with the largest effects in frontal and cingulate cortices, and negative dosage effects on caudate and hippocampal volumes. The carriers displayed distinct cognitive deficit profiles in cognitive tasks from the UK Biobank with intermediate decreases in duplication carriers and somewhat larger in deletion carriers-the latter potentially mediated by ICV or cortical surface area. These results shed light on pathobiological mechanisms of neurodevelopmental disorders, by demonstrating gene dose effect on specific brain structures and effect on cognitive function.
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- 2021
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