39 results on '"Pamme N"'
Search Results
2. Suspension Temperature as a Rheological Control Parameter in Magnetic Separation
- Author
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Sandulyak, A. V., Samdulyak, D. A., Ershova, V. A., Polismakova, M. N., Sandulyak, A. A., and Pamme, N.
- Published
- 2020
- Full Text
- View/download PDF
3. Actual Role of the Magnetic Susceptibility of Particles in Magnetophoresis (Magnetic Separation)
- Author
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Sandulyak, A. V., Polismakova, M. N., Sandulyak, A. A., Snedkov, A. B., Ershova, V. A., Sandulyak, D. A., and Pamme, N.
- Published
- 2020
- Full Text
- View/download PDF
4. Sample introduction interface for on-chip nucleic acid-based analysis of Helicobacter pylori from stool samples
- Author
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Mosley, O, Melling, L, Tarn, MD, Kemp, C, Esfahani, MMN, Pamme, N, Shaw, KJ, Mosley, O, Melling, L, Tarn, MD, Kemp, C, Esfahani, MMN, Pamme, N, and Shaw, KJ
- Abstract
We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). Efficient cell lysis and DNA extraction were achieved using stored reagents, reconstituted upon sample addition. Clinical stool samples were analysed using the device and successful amplification of a H. pylori specific target was achieved.
- Published
- 2016
5. Novel Microgels Fabricated On Microfluidic Devices
- Author
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Lu, B, Georgiou, T, Pamme, N, and 4th Micro and Nano Flows Conference (MNF2014)
- Subjects
Microgels ,Flow focusing ,Microfluidics ,T-junction ,Polymerisation ,Droplets - Abstract
This paper was presented at the 4th Micro and Nano Flows Conference (MNF2014), which was held at University College, London, UK. The conference was organised by Brunel University and supported by the Italian Union of Thermofluiddynamics, IPEM, the Process Intensification Network, the Institution of Mechanical Engineers, the Heat Transfer Society, HEXAG - the Heat Exchange Action Group, and the Energy Institute, ASME Press, LCN London Centre for Nanotechnology, UCL University College London, UCL Engineering, the International NanoScience Community, www.nanopaprika.eu. Microgels are micrometer sized particles consisting of a polymer network that show potential for the delivery of both hydrophilic and hydrophobic drugs. Microfluidic devices provide an excellent format for the generation of monodispersed droplets due to the precise manipulation of fluids and flow rates within the microchannels. Microfluidic droplet generation chips were therefore designed using T-junction and flow focusing geometries in glass. For microgel synthesis, monomers, crosslinker and initiator were added to the dispersed phase and water was used as the continuous phase. Controlled formation of monodisperse droplets was achieved with both geometries and droplets were collected off-chip for photopolymerisation. Three types of microgel were formed using this setup: poly(ethylene glycol) diacrylate, poly(propylene glycol) diacrylate, and tetrahydropyran acrylate - ethylene glycol dimethacrylate (THPA-EGDMA) microgels. THPA is a novel material for microgels that can be turned from hydrophobic to amphiphilic by hydrolysation. THPA-EGDMA microgels in particular demonstrated a strong response to pH changes due to the build-up of electrostatic force under high pH, showing potential for the encapsulation and release of drugs.
- Published
- 2014
6. Microfluidic device for the rapid coating of magnetic cells with polyelectrolytes
- Author
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Tarn M., Fakhrullin R., Paunov V., and Pamme N.
- Subjects
Biomaterials ,Magnetophoresis ,Microfluidic ,Cyborg cells ,Magnetic materials ,Polyelectrolytes - Abstract
We demonstrate a rapid method of coating a layer of polymer onto magnetically modified yeast cells, so-called cyborg cells, in continuous flow within a microfluidic chamber. Laminar flow streams of polyelectrolyte and washing buffers were generated across the chamber, and the magnetic cells were deflected sequentially through the co-flowing streams via an external magnet, allowing polyelectrolyte deposition onto the cells immediately followed by the washing step, all in less than 90 s. This simple deposition technique shows promise for the functionalization of such cyborg cells for applications including bioelectronics, bioanalysis, and toxicity screening, while the addition of more reagent streams would enable the fabrication of multilayered capsules. © 2013 Elsevier B.V.
- Published
- 2013
7. Microscreening toxicity system based on living magnetic yeast and gradient chips
- Author
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García-Alonso J., Fakhrullin R., Paunov V., Shen Z., Hardege J., Pamme N., Haswell S., and Greenway G.
- Subjects
Magnetic retention ,Microfluidic devices ,Toxicity screening ,GFP reporter yeast - Abstract
There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations. © 2010 Springer-Verlag.
- Published
- 2011
8. The generation of multi-laminar reagent streams for rapid, sequential (bio)chemical reactions on magnetic particles in a continuous flow microreactor
- Author
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Tarn, MD, Peyman, SA, Vojtisek, M, Iles, A, Pamme, N, and 2nd Micro and Nano Flows Conference (MNF2009)
- Subjects
Multi-laminar flow ,Magnetic particles ,Continuous flow ,Immunoassays ,DNA hybridisation - Abstract
This paper was presented at the 2nd Micro and Nano Flows Conference (MNF2009), which was held at Brunel University, West London, UK. The conference was organised by Brunel University and supported by the Institution of Mechanical Engineers, IPEM, the Italian Union of Thermofluid dynamics, the Process Intensification Network, HEXAG - the Heat Exchange Action Group and the Institute of Mathematics and its Applications. We demonstrate a versatile microfluidic system for performing rapid, consecutive (bio)chemical reactions in continuous flow. Surface-functionalised magnetic microparticles are introduced into a chamber and pulled, via a magnet, across a series of laminar flow streams containing different reagents, thus performing multiple sequential reactions on the particles’ surface. Such a continuous flow method eliminates many of the inefficiencies associated with batch techniques, such as the time-consuming, laborious sequential reaction and washing steps, to yield a system that can perform analyses far more rapidly and with less reagent volume than conventional methods. This innovative device has been applied to a two-reaction step mouse IgG sandwich immunoassay and one- and two-reaction step DNA hybridisation assays, all of which were completed within one minute. These results pave the way for a multi-purpose microreactor that can perform a variety of analytical and synthetic processes. This study is funded by the Engineering and Physical Sciences Research Council (EPSRC).
- Published
- 2009
9. Temperature-based tuning of magnetic particle separation by on-chip free-flow magnetophoresis
- Author
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Tarn, MD, Robert, D, Peyman, SA, Iles, A, Wilhelm, C, Pamme, N, and 2nd Micro and Nano Flows Conference (MNF2009)
- Subjects
Magnetophoresis ,Temperature dependence ,Viscosity ,Magnetic particles ,Continuous flow ,Separation - Abstract
This paper was presented at the 2nd Micro and Nano Flows Conference (MNF2009), which was held at Brunel University, West London, UK. The conference was organised by Brunel University and supported by the Institution of Mechanical Engineers, IPEM, the Italian Union of Thermofluid dynamics, the Process Intensification Network, HEXAG - the Heat Exchange Action Group and the Institute of Mathematics and its Applications. Free-flow magnetophoresis provides a fast and efficient means of continuous flow magnetic separation for the detection of biological analytes, due to the wide variety of magnetic particle surface properties available for binding specific targets. Here, we investigate the effect of temperature changes on the deflection behaviour of magnetic particles in a microfluidic magnetophoresis separation chamber. It was found that the extent of deflection was greatly increased at higher temperatures due to decreased solution viscosity and thus reduced resistance against particle motion. This concept was used to improve the resolution of the separation of 2.8 μm and 1 μm diameter magnetic particles. Hence, controlling the temperature of the separation system provides a simple but highly effective means of enhancing magnetic separation efficiency. This concept could also be applied to the temperature-based tuning of microparticle trajectories in many others types of continuous flow processes, such as those using optical, electrical or acoustic forces. This study is funded by the Engineering and Physical Sciences Research Council (EPSRC).
- Published
- 2009
10. Generation and manipulation of magnetic droplets
- Author
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Alhetlani, E, Iles, A, Pamme, N, and 2nd Micro and Nano Flows Conference (MNF2009)
- Subjects
Splitting ,Multiphase ,Deflection ,Magnetic droplets - Abstract
This paper was presented at the 2nd Micro and Nano Flows Conference (MNF2009), which was held at Brunel University, West London, UK. The conference was organised by Brunel University and supported by the Institution of Mechanical Engineers, IPEM, the Italian Union of Thermofluid dynamics, the Process Intensification Network, HEXAG - the Heat Exchange Action Group and the Institute of Mathematics and its Applications. The continuous flow generation and downstream manipulation of magnetic droplets inside a microfluidic device was investigated. Magnetic droplets were generated from aqueous ferrofluids in organic oil phase using T-junction and flow-focusing geometries in glass microfluidic devices. Due to the hydrophilic nature of glass surfaces, it was necessary to apply a hydrophobic coating in the form fluorocarbons. The size of the magnetic droplets and distance between them were controlled by adjusting the relative flow velocities of ferrofluid and oil carrier liquid. Two modes of droplet manipulation were investigated by placing small permanent magnets in the vicinity of the microfluidic channels: (i) droplet deflection across a flow chamber which could be used for sorting of droplets based on the magnetic field applied and (ii) droplet splitting at a branching junction resulting in two daughter droplets of high and low magnetite content. This study is funded by The University of Kuwait.
- Published
- 2009
11. Solvent processing of PMMA and COC chips for bonding devices with optical quality surfaces
- Author
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Verpoorte, S., Andersson-Svahn, H., Emnéus, J., Pamme, N., Ogilvie, I.R.J., Sieben, V.J., Floquet, C.F.A., Zmijan, R., Mowlem, M.C., Morgan, H., Verpoorte, S., Andersson-Svahn, H., Emnéus, J., Pamme, N., Ogilvie, I.R.J., Sieben, V.J., Floquet, C.F.A., Zmijan, R., Mowlem, M.C., and Morgan, H.
- Abstract
Many prototype microfluidic devices are manufactured by some form of micromachining or injection molding which often leaves poor quality surface. This work presents a simple method that both significantly reduces surface roughness of microfluidic chips and at the same time is used to bond devices. The method has been tested on devices made from poly(methyl methacrylate) (PMMA) and cyclic olefin copolymer (COC). The technique uses a solvent vapour exposure process which creates an irreversible bond between two substrates. It also re-flows the material, producing surfaces with optical quality.
- Published
- 2010
12. Magnetically actuated particle-based procedures in continuous flow
- Author
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Tarn M., Peyman S., Fakhrullin R., Iles A., Paunov V., Pamme N., Tarn M., Peyman S., Fakhrullin R., Iles A., Paunov V., and Pamme N.
- Abstract
We demonstrate a versatile multilaminar flow microfluidic device in which magnetic particles are used as mobile supports for performing two important applications, namely (i) a clinically relevant sandwich immunoassay, and (ii) polye-lectrolyte coating of templates towards the fabrication of microcapsules for drug delivery applications. Furthermore, we demonstrate the use of a different force, diamagnetic repulsion, for deflecting polystyrene particles through a reagent stream with a view to performing multilaminar flow studies on diamagnetic material such as polymer particles and cells.
13. Microfluidic device for the rapid coating of magnetic cells with polyelectrolytes
- Author
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Tarn M., Fakhrullin R., Paunov V., Pamme N., Tarn M., Fakhrullin R., Paunov V., and Pamme N.
- Abstract
We demonstrate a rapid method of coating a layer of polymer onto magnetically modified yeast cells, so-called cyborg cells, in continuous flow within a microfluidic chamber. Laminar flow streams of polyelectrolyte and washing buffers were generated across the chamber, and the magnetic cells were deflected sequentially through the co-flowing streams via an external magnet, allowing polyelectrolyte deposition onto the cells immediately followed by the washing step, all in less than 90 s. This simple deposition technique shows promise for the functionalization of such cyborg cells for applications including bioelectronics, bioanalysis, and toxicity screening, while the addition of more reagent streams would enable the fabrication of multilayered capsules. © 2013 Elsevier B.V.
14. Microscreening toxicity system based on living magnetic yeast and gradient chips
- Author
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García-Alonso J., Fakhrullin R., Paunov V., Shen Z., Hardege J., Pamme N., Haswell S., Greenway G., García-Alonso J., Fakhrullin R., Paunov V., Shen Z., Hardege J., Pamme N., Haswell S., and Greenway G.
- Abstract
There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations. © 2010 Springer-Verlag.
15. Microscreening toxicity system based on living magnetic yeast and gradient chips
- Author
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García-Alonso J., Fakhrullin R., Paunov V., Shen Z., Hardege J., Pamme N., Haswell S., Greenway G., García-Alonso J., Fakhrullin R., Paunov V., Shen Z., Hardege J., Pamme N., Haswell S., and Greenway G.
- Abstract
There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations. © 2010 Springer-Verlag.
16. Microfluidic device for the rapid coating of magnetic cells with polyelectrolytes
- Author
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Tarn M., Fakhrullin R., Paunov V., Pamme N., Tarn M., Fakhrullin R., Paunov V., and Pamme N.
- Abstract
We demonstrate a rapid method of coating a layer of polymer onto magnetically modified yeast cells, so-called cyborg cells, in continuous flow within a microfluidic chamber. Laminar flow streams of polyelectrolyte and washing buffers were generated across the chamber, and the magnetic cells were deflected sequentially through the co-flowing streams via an external magnet, allowing polyelectrolyte deposition onto the cells immediately followed by the washing step, all in less than 90 s. This simple deposition technique shows promise for the functionalization of such cyborg cells for applications including bioelectronics, bioanalysis, and toxicity screening, while the addition of more reagent streams would enable the fabrication of multilayered capsules. © 2013 Elsevier B.V.
17. Magnetically actuated particle-based procedures in continuous flow
- Author
-
Tarn M., Peyman S., Fakhrullin R., Iles A., Paunov V., Pamme N., Tarn M., Peyman S., Fakhrullin R., Iles A., Paunov V., and Pamme N.
- Abstract
We demonstrate a versatile multilaminar flow microfluidic device in which magnetic particles are used as mobile supports for performing two important applications, namely (i) a clinically relevant sandwich immunoassay, and (ii) polye-lectrolyte coating of templates towards the fabrication of microcapsules for drug delivery applications. Furthermore, we demonstrate the use of a different force, diamagnetic repulsion, for deflecting polystyrene particles through a reagent stream with a view to performing multilaminar flow studies on diamagnetic material such as polymer particles and cells.
18. Gendered farmer perceptions towards soil nutrition and willingness to pay for a cafetière-style filter system for in-situ soil testing: Evidence from Central Kenya.
- Author
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Kamau P, Ndirangu I, Richardson S, Pamme N, and Gitaka J
- Abstract
Soil nutrition is a key pillar in agricultural productivity. However, point-of-need testing for soil nutrition is not readily available in resource-limited settings such as Kenya. We set out to study the perceived need for soil testing among farmers in this country. A group of 547 farmers from Murang'a and Kiambu counties in central Kenya were recruited through multi-stage sampling to help assess the perceptions and willingness to pay (WTP) toward a prototype technology for surveillance of in-situ soil nutrition. The technology is based on a cafetière-style filter system for extraction and a microfluidic paper-based analytical device (μPAD) for nutrient readout. We employed the double bounded choice contingent valuation method (CVM) to analyze the willingness of farmers to accept and pay for the prototype if the technology was available on the market. It was found that currently, only 1.5 % of farmers carry out soil testing. The high costs of analysis at testing centers, which are often far from the farmers, are among the main reasons contributing to the majority of farmers not testing their soils. The farmers surveyed were generally willing to make their soil data publicly accessible, especially to extension officers. CVM showed that uncontrolled WTP had a 94.24 % premium above KSh1,000 ($6.60) incurred by using the existing rapid testing method. Factoring the control variables and disaggregating the model into gender categories, the findings showed that youth, women, and men had WTP values of KSh1,612.53 ($10.75), KSh1,558.68 ($10.39), and KSh1,504.83 ($10.03), respectively, indicating that farmers can indeed pay for the convenience to test their soils in situ . Through the democratization of soil nutrition data, extension agents can enhance the improvement of agricultural productivity, which implies that farmers can commercialize their agricultural activities., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
- Full Text
- View/download PDF
19. Multi-repeat sequences identification using genome mining techniques for developing highly sensitive molecular diagnostic assay for the detection of Chlamydia trachomatis .
- Author
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Shiluli C, Kamath S, N Kanoi B, Kimani R, Maina M, Waweru H, Kamita M, Ndirangu I, M Abkallo H, Oduor B, Pamme N, Dupaty J, M Klapperich C, Raju Lolabattu S, and Gitaka J
- Abstract
Chlamydia trachomatis ( C. trachomatis ) is a common sexually transmitted infection (STI). In 2019, the World Health Organization reported about 131 million infections. The majority of infected patients are asymptomatic with cases remaining undetected. It is likely that missed C. trachomatis infections contribute to preventable adverse health outcomes in women and children. Consequently, there is an urgent need of developing efficient diagnostic methods. In this study, genome-mining approaches to identify identical multi-repeat sequences (IMRS) distributed throughout the C. trachomatis genome were used to design a primer pair that would target regions in the genome. Genomic DNA was 10-fold serially diluted (100pg/μL to 1×10
-3 pg/μL) and used as DNA template for PCR reactions. The gold standard PCR using 16S rRNA primers was also run as a comparative test, and products were resolved on agarose gel. The novel assay, C. trachomatis IMRS-PCR, had an analytical sensitivity of 4.31 pg/µL, representing better sensitivity compared with 16S rRNA PCR (9.5 fg/µL). Our experimental data demonstrate the successful development of lateral flow and isothermal assays for detecting C. trachomatis DNA with potential use in field settings. There is a potential to implement this concept in miniaturized, isothermal, microfluidic platforms, and laboratory-on-a-chip diagnostic devices for reliable point-of-care testing., Competing Interests: No competing interests were disclosed., (Copyright: © 2024 Shiluli C et al.)- Published
- 2024
- Full Text
- View/download PDF
20. Integration of IFAST-based nucleic acid extraction and LAMP for on-chip rapid detection of Agroathelia rolfsii in soil.
- Author
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Changtor P, Rodriguez-Mateos P, Buddhachat K, Wattanachaiyingcharoen W, Iles A, Kerdphon S, Yimtragool N, and Pamme N
- Subjects
- Surface Tension, Nucleic Acid Amplification Techniques methods, DNA, DNA Primers, Sensitivity and Specificity, Nucleic Acids, Biosensing Techniques
- Abstract
Agroathelia rolfsii (A. rolfsii) is a fungal infection and poses a significant threat to over 500 plant species worldwide. It can reduce crop yields drastically resulting in substantial economic losses. While conventional detection methods like PCR offer high sensitivity and specificity, they require specialized and expensive equipment, limiting their applicability in resource-limited settings and in the field. Herein, we present an integrated workflow with nucleic acid extraction and isothermal amplification in a lab-on-a-chip cartridge based on immiscible filtration assisted by surface tension (IFAST) to detect A. rolfsii fungi in soil for point-of-need application. Our approach enabled both DNA extraction of A. rolfsii from soil and subsequent colorimetric loop-mediated isothermal amplification (LAMP) to be completed on a single chip, termed IFAST-LAMP. LAMP primers targeting ITS region of A. rolfsii were newly designed and tested. Two DNA extraction methods based on silica paramagnetic particles (PMPs) and three LAMP assays were compared. The best-performing assay was selected for on-chip extraction and detection of A. rolfsii from soil samples inoculated with concentrations of 3.75, 0.375 and 0.0375 mg fresh weight per 100-g soil (%FW). The full on-chip workflow was achieved within a 1-h turnaround time. The platform was capable of detecting as low as 3.75 %FW at 2 days after inoculation and down to 0.0375 %FW at 3 days after inoculation. The IFAST-LAMP could be suitable for field-applicability for A. rolfsii detection in low-resource settings., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
21. Improving gonorrhoea molecular diagnostics: Genome mining-based identification of identical multi-repeat sequences (IMRS) in Neisseria gonorrhoeae .
- Author
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Shiluli C, Kamath S, Kanoi BN, Kimani R, Maina M, Waweru H, Kamita M, Ndirangu I, Abkallo HM, Oduor B, Pamme N, Dupaty J, Klapperich CM, Lolabattu SR, and Gitaka J
- Abstract
Background: Curable sexually transmitted infections (STIs), such as Neisseria gonorrhoeae ( N. gonorrhoeae ), are a major cause of poor pregnancy outcomes. The infection is often asymptomatic in pregnant women, and a syndrome-based approach of testing leads to a missed diagnosis. Culture followed by microscopy is inadequate and time-consuming. The gold standard nucleic acid amplification tests require advanced infrastructure settings, whereas point-of-care tests are limited to immunoassays with sensitivities and specificities insufficient to accurately diagnose asymptomatic cases. This necessitates the development and validation of assays that are fit for purpose., Methods: We identified new diagnostic target biomarker regions for N. gonorrhoeae using an algorithm for genome mining of identical multi-repeat sequences (IMRS). These were then developed as DNA amplification primers to design better diagnostic assays. To test the primer pair, genomic DNA was 10-fold serially diluted (100 pg/μL to 1 × 10
-3 pg/μL) and used as DNA template for PCR reactions. The gold standard PCR using 16S rRNA primers was also run as a comparative test, and both assay products were resolved on 1% agarose gel., Results: Our newly developed N. gonorrhoeae IMRS-PCR assay had an analytical sensitivity of 6 fg/μL representing better sensitivity than the 16S rRNA PCR assay with an analytical sensitivity of 4.3096 pg/μL. The assay was also successfully validated using clinical urethral swab samples. We further advanced this technique by developing an isothermal IMRS, which was both reliable and sensitive for detecting cultured N. gonorrhoeae isolates at a concentration of 38 ng/μL. Combining isothermal IMRS with a low-cost lateral flow assay, we were able to detect N. gonorrhoeae amplicons at a starting concentration of 100 pg/μL., Conclusion: Therefore, there is a potential to implement this concept within miniaturized, isothermal, microfluidic platforms, and laboratory-on-a-chip diagnostic devices for highly reliable point-of-care testing., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 Published by Elsevier Ltd.)- Published
- 2024
- Full Text
- View/download PDF
22. Development and validation of spectrophotometric method and paper-based microfluidic devices for the quantitative determination of Amoxicillin in pure form and pharmaceutical formulations.
- Author
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Oday J, Hadi H, Hashim P, Richardson S, Iles A, and Pamme N
- Abstract
There is a growing need for easy-to-use, low cost and portable quantitative assays to determine active pharmaceutical ingredients in the pharmaceutical industry. Here, we developed a batch spectrophotometric method and a method employing a paper-based microfluidic device for the estimation of Amoxicillin (AMX) in pure solution and pharmaceutical preparations. The detection depends on the coupling reaction of Amoxicillin with diazotized sulfadimidine (DSDM) in an alkaline medium. The yellow azo dye reaction product was measured at λ
max 425 nm and linearity was observed from 2 to 30 mg L-1 with a detection limit of 0.32 mg L-1 and a quantification limit of 1.2 mg L-1 was found. The reaction was then transferred onto the paper-based microfluidic device and a plateau change in color intensity was found above 10 mg L-1 . Thus, the paper-based microfluidic device can be applied for the semi-quantitative determination of Amoxicillin in pure solution and commercial pharmaceutical products for rapid screening., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)- Published
- 2024
- Full Text
- View/download PDF
23. Development of a dual-flow tissue perfusion device for modeling the gastrointestinal tract-brain axis.
- Author
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Baldwin L, Jones EJ, Iles A, Carding SR, Pamme N, Dyer CE, and Greenman J
- Abstract
Despite the large number of microfluidic devices that have been described over the past decade for the study of tissues and organs, few have become widely adopted. There are many reasons for this lack of adoption, primarily that devices are constructed for a single purpose or because they are highly complex and require relatively expensive investment in facilities and training. Here, we describe a microphysiological system (MPS) that is simple to use and provides fluid channels above and below cells, or tissue biopsies, maintained on a disposable, poly(methyl methacrylate), carrier held between polycarbonate outer plates. All other fittings are standard Luer sizes for ease of adoption. The carrier can be coated with cells on both sides to generate membrane barriers, and the devices can be established in series to allow medium to flow from one cell layer to another. Furthermore, the carrier containing cells can be easily removed after treatment on the device and the cells can be visualized or recovered for additional off-chip analysis. A 0.4 μ m membrane with cell monolayers proved most effective in maintaining separate fluid flows, allowing apical and basal surfaces to be perfused independently. A panel of different cell lines (Caco-2, HT29-MTX-E12, SH-SY5Y, and HUVEC) were successfully maintained in the MPS for up to 7 days, either alone or on devices connected in series. The presence of tight junctions and mucin was expressed as expected by Caco-2 and HT-29-MTX-E12, with Concanavalin A showing uniform staining. Addition of Annexin V and PI showed viability of these cells to be >80% at 7 days. Bacterial extracellular vesicles (BEVs) produced by Bacteroides thetaiotaomicron and labeled with 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbo-cyanine perchlorate (DiD) were used as a model component of the human colonic microbiota and were visualized translocating from an apical surface containing Caco-2 cells to differentiated SH-SY5Y neuronal cells cultured on the basal surface of connected devices. The newly described MPS can be easily adapted, by changing the carrier to maintain spheroids, pieces, or slices of biopsy tissue and joined in series to study a variety of cell and tissue processes. The cell layers can be made more complex through the addition of multiple cell types and/or different patterning of extracellular matrix and the ability to culture cells adjacent to one another to allow study of cell:cell transfer, e.g., passive or active drug transfer, virus or bacterial entry or BEV uptake and transfer., Competing Interests: The authors have no conflicts to disclose., (© 2023 Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
24. Immobilised-enzyme microreactors for the identification and synthesis of conjugated drug metabolites.
- Author
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Doyle B, Madden LA, Pamme N, and Jones HS
- Abstract
The study of naturally circulating drug metabolites has been a focus of interest, since these metabolites may have different therapeutic and toxicological effects compared to the parent drug. The synthesis of metabolites outside of the human body is vital in order to conduct studies into the pharmacological activities of drugs and bioactive compounds. Current synthesis methods require significant purification and separation efforts or do not provide sufficient quantities for use in pharmacology experiments. Thus, there is a need for simple methods yielding high conversions whilst bypassing the requirement for a separation. Here we have developed and optimised flow chemistry methods in glass microfluidic reactors utilising surface-immobilised enzymes for sulfonation (SULT1a1) and glucuronidation (UGT1a1). Conversion occurs in flow, the precursor and co-factor are pumped through the device, react with the immobilised enzymes and the product is then simply collected at the outlet with no separation from a complex biological matrix required. Conversion only occurred when both the correct co-factor and enzyme were present within the microfluidic system. Yields of 0.97 ± 0.26 μg were obtained from the conversion of resorufin into resorufin sulfate over 2 h with the SULT1a1 enzyme and 0.47 μg of resorufin glucuronide over 4 h for UGT1a1. This was demonstrated to be significantly more than static test tube reactions at 0.22 μg (SULT1a1) and 0.19 μg (UGT1a1) over 4 h. With scaling out and parallelising, useable quantities of hundreds of micrograms for use in pharmacology studies can be synthesised simply., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2023
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- View/download PDF
25. Integrated microscale immiscible phase extraction and isothermal amplification for colorimetric detection of Neisseria gonorrhoeae.
- Author
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Rodriguez-Mateos P, Ngamsom B, Ameyo D, Wakaba P, Shiluli C, Iles A, Gitaka J, and Pamme N
- Subjects
- Humans, Neisseria gonorrhoeae genetics, Colorimetry, Chlamydia trachomatis genetics, Gonorrhea diagnosis, Gonorrhea prevention & control, Chlamydia Infections diagnosis, Sexually Transmitted Diseases diagnosis, Sexually Transmitted Diseases epidemiology
- Abstract
Gonorrhea is the second most common sexually transmitted infection (STI) with around 87 million cases worldwide estimated in 2016 by the World Health Organization. With over half of the cases being asymptomatic, potential life-threatening complications and increasing numbers of drug-resistant strains, routine monitoring of prevalence and incidence of infections are key preventive measures. Whilst gold standard qPCR tests have excellent accuracy, they are neither affordable nor accessible in low-resource settings. In this study, we developed a lab-on-a-chip platform based on microscale immiscible filtration to extract, concentrate and purify Neisseria gonorrhoeae DNA with an integrated detection assay based on colorimetric isothermal amplification. The platform was capable of detecting as low as 500 copies/mL from spiked synthetic urine and showed no cross-reactivity when challenged with DNAs from other common STIs. The credit card-size device allows DNA extraction and purification without power or centrifuges, and the detection reaction only needs a low-tech block heater, providing a straightforward and visual positive/negative result within 1 h. These advantages offer great potential for accurate, affordable and accessible monitoring of gonorrhea infection in resource-poor settings., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
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26. A sample-to-answer COVID-19 diagnostic device based on immiscible filtration and CRISPR-Cas12a-assisted detection.
- Author
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Ngamsom B, Iles A, Kamita M, Kimani R, Wakaba P, Rodriguez-Mateos P, Mungai M, Dyer CE, Walter C, Gitaka J, and Pamme N
- Abstract
In response to the ongoing coronavirus disease 2019 (COVID-19) pandemic and disparities of vaccination coverage in low-and middle-income countries, it is vital to adopt a widespread testing and screening programme, combined with contact tracing, to monitor and effectively control the infection dispersion in areas where medical resources are limited. This work presents a lab-on-a-chip device, namely 'IFAST-LAMP-CRISPR', as an affordable, rapid and high-precision molecular diagnostic means for detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). The herein proposed 'sample-to-answer' platform integrates RNA extraction, amplification and molecular detection with lateral flow readout in one device. The microscale dimensions of the device containing immiscible liquids, coupled with the use of silica paramagnetic beads and guanidine hydrochloride, streamline sample preparation (including RNA extraction, concentration and purification) in 15 min with minimal hands-on steps. The pre-amplification in combination with CRISPR-Cas12a detection assays targeting the nucleoprotein (N) gene achieved visual identification of ≥ 470 copies mL
-1 genomic SARS-CoV-2 samples in 45 min. On-chip assays showed the ability to isolate and detect SARS-CoV-2 RNA from 100 genome copies mL-1 of replication-deficient viral particles in 1 h. This simple, affordable and integrated platform demonstrated a visual, faster, and yet specificity- and sensitivity-comparable alternative to the costly gold-standard reverse transcription-polymerase chain reaction (RT-PCR) assay, requiring only a simple heating source. Initial testing illustrates the platform viability both on nasopharyngeal swab and saliva samples collected using the easily accessible Swan-brand cigarette filter, providing a complete workflow for COVID-19 diagnostics in low-resource settings., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this article, (© 2022 The Authors.)- Published
- 2022
- Full Text
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27. Citizen-led sampling to monitor phosphate levels in freshwater environments using a simple paper microfluidic device.
- Author
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Richardson S, Iles A, Rotchell JM, Charlson T, Hanson A, Lorch M, and Pamme N
- Subjects
- Cell Phone, Humans, Limit of Detection, Paper, Rivers chemistry, Fresh Water analysis, Microfluidic Analytical Techniques instrumentation, Phosphates analysis
- Abstract
Contamination of waterways is of increasing concern, with recent studies demonstrating elevated levels of antibiotics, antidepressants, household, agricultural and industrial chemicals in freshwater systems. Thus, there is a growing demand for methods to rapidly and conveniently monitor contaminants in waterways. Here we demonstrate how a combination of paper microfluidic devices and handheld mobile technology can be used by citizen scientists to carry out a sustained water monitoring campaign. We have developed a paper-based analytical device and a 3 minute sampling workflow that requires no more than a container, a test device and a smartphone app. The contaminant measured in these pilots are phosphates, detectable down to 3 mg L-1. Together these allow volunteers to successfully carry out cost-effective, high frequency, phosphate monitoring over an extended geographies and periods., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2021
- Full Text
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28. Spheroid-on-chip microfluidic technology for the evaluation of the impact of continuous flow on metastatic potential in cancer models in vitro .
- Author
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Collins T, Pyne E, Christensen M, Iles A, Pamme N, and Pires IM
- Abstract
The majority of cancer deaths are linked to tumor spread, or metastasis, but 3D in vitro metastasis models relevant to the tumor microenvironment (including interstitial fluid flow) remain an area of unmet need. Microfluidics allows us to introduce controlled flow to an in vitro cancer model to better understand the relationship between flow and metastasis. Here, we report new hybrid spheroid-on-chip in vitro models for the impact of interstitial fluid flow on cancer spread. We designed a series of reusable glass microfluidic devices to contain one spheroid in a microwell under continuous perfusion culture. Spheroids derived from established cancer cell lines were perfused with complete media at a flow rate relevant to tumor interstitial fluid flow. Spheroid viability and migratory/invasive capabilities were maintained on-chip when compared to off-chip static conditions. Importantly, using flow conditions modeled in vitro , we are the first to report flow-induced secretion of pro-metastatic factors, in this case cytokines vascular endothelial growth factor and interleukin 6. In summary, we have developed a new, streamlined spheroid-on-chip in vitro model that represents a feasible in vitro alternative to conventional murine in vivo metastasis assays, including complex tumor environmental factors, such as interstitial fluid flow, extracellular matrices, and using 3D models to model nutrient and oxygen gradients. Our device, therefore, constitutes a robust alternative to in vivo early-metastasis models for determination of novel metastasis biomarkers as well as evaluation of therapeutically relevant molecular targets not possible in in vivo murine models., (© 2021 Author(s).)
- Published
- 2021
- Full Text
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29. Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens.
- Author
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van Belkum A, Almeida C, Bardiaux B, Barrass SV, Butcher SJ, Çaykara T, Chowdhury S, Datar R, Eastwood I, Goldman A, Goyal M, Happonen L, Izadi-Pruneyre N, Jacobsen T, Johnson PH, Kempf VAJ, Kiessling A, Bueno JL, Malik A, Malmström J, Meuskens I, Milner PA, Nilges M, Pamme N, Peyman SA, Rodrigues LR, Rodriguez-Mateos P, Sande MG, Silva CJ, Stasiak AC, Stehle T, Thibau A, Vaca DJ, and Linke D
- Abstract
Infectious diseases are an existential health threat, potentiated by emerging and re-emerging viruses and increasing bacterial antibiotic resistance. Targeted treatment of infectious diseases requires precision diagnostics, especially in cases where broad-range therapeutics such as antibiotics fail. There is thus an increasing need for new approaches to develop sensitive and specific in vitro diagnostic (IVD) tests. Basic science and translational research are needed to identify key microbial molecules as diagnostic targets, to identify relevant host counterparts, and to use this knowledge in developing or improving IVD. In this regard, an overlooked feature is the capacity of pathogens to adhere specifically to host cells and tissues. The molecular entities relevant for pathogen-surface interaction are the so-called adhesins. Adhesins vary from protein compounds to (poly-)saccharides or lipid structures that interact with eukaryotic host cell matrix molecules and receptors. Such interactions co-define the specificity and sensitivity of a diagnostic test. Currently, adhesin-receptor binding is typically used in the pre-analytical phase of IVD tests, focusing on pathogen enrichment. Further exploration of adhesin-ligand interaction, supported by present high-throughput "omics" technologies, might stimulate a new generation of broadly applicable pathogen detection and characterization tools. This review describes recent results of novel structure-defining technologies allowing for detailed molecular analysis of adhesins, their receptors and complexes. Since the host ligands evolve slowly, the corresponding adhesin interaction is under selective pressure to maintain a constant receptor binding domain. IVD should exploit such conserved binding sites and, in particular, use the human ligand to enrich the pathogen. We provide an inventory of methods based on adhesion factors and pathogen attachment mechanisms, which can also be of relevance to currently emerging pathogens, including SARS-CoV-2, the causative agent of COVID-19.
- Published
- 2021
- Full Text
- View/download PDF
30. Microfluidic-Based Electrochemical Immunosensing of Ferritin.
- Author
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Garg M, Christensen MG, Iles A, Sharma AL, Singh S, and Pamme N
- Subjects
- Electrochemistry, Electrodes, Graphite, Humans, Lab-On-A-Chip Devices, Limit of Detection, Nanotechnology, Biosensing Techniques, Electrochemical Techniques, Ferritins analysis, Microfluidics
- Abstract
Ferritin is a clinically important biomarker which reflects the state of iron in the body and is directly involved with anemia. Current methods available for ferritin estimation are generally not portable or they do not provide a fast response. To combat these issues, an attempt was made for lab-on-a-chip-based electrochemical detection of ferritin, developed with an integrated electrochemically active screen-printed electrode (SPE), combining nanotechnology, microfluidics, and electrochemistry. The SPE surface was modified with amine-functionalized graphene oxide to facilitate the binding of ferritin antibodies on the electrode surface. The functionalized SPE was embedded in the microfluidic flow cell with a simple magnetic clamping mechanism to allow continuous electrochemical detection of ferritin. Ferritin detection was accomplished via cyclic voltammetry with a dynamic linear range from 7.81 to 500 ng·mL
-1 and an LOD of 0.413 ng·mL-1 . The sensor performance was verified with spiked human serum samples. Furthermore, the sensor was validated by comparing its response with the response of the conventional ELISA method. The current method of microfluidic flow cell-based electrochemical ferritin detection demonstrated promising sensitivity and selectivity. This confirmed the plausibility of using the reported technique in point-of-care testing applications at a much faster rate than conventional techniques.- Published
- 2020
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31. "Learning on a chip:" Microfluidics for formal and informal science education.
- Author
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Rackus DG, Riedel-Kruse IH, and Pamme N
- Abstract
Microfluidics is a technique for the handling of small volumes of liquids on the order of picoliters to nanoliters and has impact for miniaturized biomedical science and fundamental research. Because of its multi- and interdisciplinary nature (i.e., combining the fields of biology, chemistry, physics, and engineering), microfluidics offers much potential for educational applications, both at the university level as well as primary and secondary education. Microfluidics is also an ideal "tool" to enthuse and educate members of the general public about the interdisciplinary aspects of modern sciences, including concepts of science, technology, engineering, and mathematics subjects such as (bio)engineering, chemistry, and biomedical sciences. Here, we provide an overview of approaches that have been taken to make microfluidics accessible for formal and informal learning. We also point out future avenues and desired developments. At the extreme ends, we can distinguish between projects that teach how to build microfluidic devices vs projects that make various microscopic phenomena (e.g., low Reynolds number hydrodynamics, microbiology) accessible to learners and the general public. Microfluidics also enables educators to make experiments low-cost and scalable, and thereby widely accessible. Our goal for this review is to assist academic researchers working in the field of microfluidics and lab-on-a-chip technologies as well as educators with translating research from the laboratory into the lecture hall, teaching laboratory, or public sphere.
- Published
- 2019
- Full Text
- View/download PDF
32. Stereolithographic 3D printing of extrinsically self-healing composites.
- Author
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Sanders P, Young AJ, Qin Y, Fancey KS, Reithofer MR, Guillet-Nicolas R, Kleitz F, Pamme N, and Chin JM
- Abstract
We demonstrate for the first time the direct stereolithographic 3D printing of an extrinsically self-healing composite, comprised of commercial photocurable resin modified with anisole and PMMA-filled microcapsules. The composites demonstrate solvent-welding based autonomous self-healing to afford 87% recovery of the initial critical toughness. This work illustrates the potential of stereolithographic printing to fabricate self-healing composites with user-defined structures, avoiding the need for extensive rheological optimization of printing inks, like in direct-write 3D printing. Importantly, this work also demonstrates the inclusion of microcapsules into 3D printing resins to incorporate additional functionality into printed composites, which could be adapted for applications beyond self-healing materials.
- Published
- 2019
- Full Text
- View/download PDF
33. Magnetic Particle Plug-Based Assays for Biomarker Analysis.
- Author
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Phurimsak C, Tarn MD, and Pamme N
- Abstract
Conventional immunoassays offer selective and quantitative detection of a number of biomarkers, but are laborious and time-consuming. Magnetic particle-based assays allow easy and rapid selection of analytes, but still suffer from the requirement of tedious multiple reaction and washing steps. Here, we demonstrate the trapping of functionalised magnetic particles within a microchannel for performing rapid immunoassays by flushing consecutive reagent and washing solutions over the trapped particle plug. Three main studies were performed to investigate the potential of the platform for quantitative analysis of biomarkers: (i) a streptavidin-biotin binding assay; (ii) a sandwich assay of the inflammation biomarker, C-reactive protein (CRP); and (iii) detection of the steroid hormone, progesterone (P4), towards a competitive assay. Quantitative analysis with low limits of detection was demonstrated with streptavidin-biotin, while the CRP and P4 assays exhibited the ability to detect clinically relevant analytes, and all assays were completed in only 15 min. These preliminary results show the great potential of the platform for performing rapid, low volume magnetic particle plug-based assays of a range of clinical biomarkers via an exceedingly simple technique.
- Published
- 2016
- Full Text
- View/download PDF
34. Lab-on-a-chip workshop activities for secondary school students.
- Author
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Esfahani MM, Tarn MD, Choudhury TA, Hewitt LC, Mayo AJ, Rubin TA, Waller MR, Christensen MG, Dawson A, and Pamme N
- Abstract
The ability to engage and inspire younger generations in novel areas of science is important for bringing new researchers into a burgeoning field, such as lab-on-a-chip. We recently held a lab-on-a-chip workshop for secondary school students, for which we developed a number of hands-on activities that explained various aspects of microfluidic technology, including fabrication (milling and moulding of microfluidic devices, and wax printing of microfluidic paper-based analytical devices, so-called μPADs), flow regimes (gradient formation via diffusive mixing), and applications (tissue analysis and μPADs). Questionnaires completed by the students indicated that they found the workshop both interesting and informative, with all activities proving successful, while providing feedback that could be incorporated into later iterations of the event.
- Published
- 2016
- Full Text
- View/download PDF
35. On-chip processing of particles and cells via multilaminar flow streams.
- Author
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Tarn MD, Lopez-Martinez MJ, and Pamme N
- Subjects
- Animals, Arabidopsis cytology, Arabidopsis physiology, Cell Adhesion, Diffusion, Eukaryotic Cells cytology, Eukaryotic Cells physiology, Humans, Magnetic Fields, Microfluidics instrumentation, Optical Tweezers, Particle Size, Biomechanical Phenomena physiology, Microfluidic Analytical Techniques, Microfluidics methods, Rheology methods
- Abstract
The processing of particles, cells, and droplets for reactions, analyses, labeling, and coating is an important aspect of many microfluidic workflows. However, performing multi-step processes is typically a laborious and time-consuming endeavor. By exploiting the laminar nature of flow within microchannels, such procedures can benefit in terms of both speed and simplicity. This can be achieved either by manipulating the flow streams around the objects of interest, particularly for the localized perfusion of cells, or by manipulating the objects themselves within the streams via a range of forces. Here, we review the variety of methods that have been employed for performing such "multilaminar flow" procedures on particles, cells, and droplets.
- Published
- 2014
- Full Text
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36. Microfluidic platforms for performing surface-based clinical assays.
- Author
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Tarn MD and Pamme N
- Subjects
- Humans, Immunologic Tests, Microchip Analytical Procedures, Microfluidics, Immunoassay, Microfluidic Analytical Techniques
- Abstract
The need for fast, specific and portable diagnostic systems for clinical assays has, in recent years, led to an explosion of research into microfluidic chip-based immunoassays towards rapid point-of-care analysis. Such devices exploit small dimensions, superior fluidic control and low reagent volumes to allow a number of clinically important procedures to be achieved with improvements on conventional methods, many of which rely on the surface-based binding of antigens to antibodies. Here, we discuss recent developments and innovations in the area of on-chip surface-based immunoassays and provide an outlook on the potential of such platforms for future diagnostics.
- Published
- 2011
- Full Text
- View/download PDF
37. Microscreening toxicity system based on living magnetic yeast and gradient chips.
- Author
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García-Alonso J, Fakhrullin RF, Paunov VN, Shen Z, Hardege JD, Pamme N, Haswell SJ, and Greenway GM
- Subjects
- Dose-Response Relationship, Drug, Green Fluorescent Proteins, Microfluidic Analytical Techniques instrumentation, Toxicity Tests, Yeasts genetics, Industrial Waste analysis, Magnetics, Microfluidic Analytical Techniques methods, Yeasts metabolism
- Abstract
There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations.
- Published
- 2011
- Full Text
- View/download PDF
38. Rapid, multistep on-chip DNA hybridisation in continuous flow on magnetic particles.
- Author
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Vojtísek M, Iles A, and Pamme N
- Subjects
- Base Sequence, Biotin, DNA chemistry, DNA genetics, DNA Probes genetics, Fluorescent Dyes, Intercalating Agents, Magnetics, Streptavidin, DNA analysis, Microfluidic Analytical Techniques instrumentation, Nucleic Acid Hybridization
- Abstract
DNA hybridisation is an important tool for bioanalytical research and clinical diagnostics; conventional methods, however, require long incubation times and numerous washing steps, rendering the procedure time consuming and labour intensive. In this paper, we report on a rapid method for DNA hybridisation and isolation within a microfluidic device, where all reaction and washing steps are performed in continuous flow in an automated fashion within less than two minutes. Magnetic particles were used as a solid support and manipulated through laminar flow streams containing reagents and buffers by means of an external magnet. Thus, hybridisation, washing, intercalation, fluorescence detection and isolation were performed in continuous flow on the surface of the particles. Initially, the sensitivity of the system was investigated for a one-step DNA hybridisation of Alexa Fluor 555 labelled target DNA to a capture probe immobilised on the particle surface. Hybridisation and washing steps were performed in half a minute and target DNA was readily detected down to 20 nmol L(-1). Then a two-step assay, label-free DNA hybridisation followed by intercalation with PicoGreen was performed. All reaction and washing steps were carried out in continuous flow with a total assay time of about 1 min. This is a significant reduction in procedural time compared to conventional methods and opens the door for developing fully automated continuous flow integrated DNA analysis platforms., (2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
39. On-chip diamagnetic repulsion in continuous flow.
- Author
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Tarn MD, Hirota N, Iles A, and Pamme N
- Abstract
We explore the potential of a microfluidic continuous flow particle separation system based on the repulsion of diamagnetic materials from a high magnetic field. Diamagnetic polystyrene particles in paramagnetic manganese (II) chloride solution were pumped into a microfluidic chamber and their deflection behaviour in a high magnetic field applied by a superconducting magnet was investigated. Two particle sizes (5 and 10 μm) were examined in two concentrations of MnCl
2 (6 and 10%). The larger particles were repelled to a greater extent than the smaller ones, and the effect was greatly enhanced when the particles were suspended in a higher concentration of MnCl2 . These findings indicate that the system could be viable for the separation of materials of differing size and/or diamagnetic susceptibility, and as such could be suitable for the separation and sorting of small biological species for subsequent studies.- Published
- 2009
- Full Text
- View/download PDF
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