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The Delta Smelt is a largely zooplank­tivorous, endangered fish endemic to the San Francisco Estuary (the estuary). High flows increase the availability of fresh and brackish water habitat for Delta Smelt, but also may mobilize contaminants, potentially increasing toxicological stress. Here, we examine the association between contaminants and Delta Smelt health across contrasting water year types and flow-related management actions. Our study spanned the fall season of three years: 1 dry year (2018) bracketed by 2 wet years (2017 and 2019) and coincided with several management actions meant to benefit Delta Smelt. We collected field water from six sites in the estuary that encompass the freshwater and low-salinity habitat of Delta Smelt and analyzed the water for contaminant concentrations. After a 96-hour exposure to the field water, we assessed cultured Delta Smelt survival and the histopathological condition of the gill and liver. Insecticides, particularly fipronil metabolites, were the most prevalent contaminants detected in 2017 and 2018, and a variety of contaminants associated with the rice harvest were detected in 2019. No acute toxicity was observed during any exposure, but we observed negative effects in the livers of Delta Smelt exposed to agricultural water from the Toe Drain and Cache Slough during a 2019 pulse flow action, which coincided with elevated detections and concentrations of organic pesticides. Other noteworthy sub-lethal effects, likely occurring in response to contaminant mixtures, included severe gill lesions in Delta Smelt exposed to Decker Island water in 2019. In the drier year of 2018, lesions were generally mild or absent. Thus, the trade-offs between increased habitat availability and contaminant loading may provide one explanation for why Delta Smelt abundance does not consistently respond positively to outflow.

During January and February 2022, a huge spike in the cases of COVID-19 was recorded in the Khyber Pakhtunkhwa (KP) province of Pakistan prompting the civil administration to institute new restrictions. To investigate the underlying causes of this surge, the regional Public Health Reference Lab (PHRL) launched a screening effort throughout the Province's remote and urban areas. Herein, we present our survey results during the peak months of the pandemic. The data indicated the prevalence of highly transmissible delta- and Omicron-like virus variants, which may explain the rise in positive cases. Phylogenetic analysis revealed the genetic association between the sequences from this study and those found in Pakistan as well as from geographically distant countries, suggesting a complex evolutionary history. For screening, we deployed an easy-to-use single primer-based polymerase chain reaction (PCR) assay to identify the circulation of SARS-CoV-2. The assay was validated using clinical swabs of COVID-19 patients and obtained consistent results with Sanger sequencing. Our survey identified a patient simultaneously infected with two variants of concern, indicating the presence of the Deltacron variant, although we cannot discount the possibility of sequencing errors. We recommend that SARS-CoV-2 be continuously monitored to detect single nucleotide polymorphisms (SNPs) that are causally linked to the emergence of new lineages. Our method provides a rapid and cost-effective detection assay for SARS-CoV-2 in a resource-constrained setting. [ABSTRACT FROM AUTHOR]

Rabbit viral haemorrhagic disease (RVHD) is a fatal threat to rabbits causing long-term problems and significant economic losses. In the current study, RVHD was identified and characterised in naturally infected rabbits in order to assess the genetic diversity of RHDV circulating in different Egyptian provinces from January 2019 to January 2022. Nineteen suspected samples were collected from outbreaks that occurred in nine provinces during 2019-2022. Ten liver samples out of nineteen were positive in the slide and plate haemagglutination (HA) test. HA titres ranged from 5 log2 to 12 log2. RHDV-positive liver homogenates were confirmed with RT-PCR and histopathology. Further characterisation of the selected four viral strains was performed by nucleotide sequencing of VP60 gene. Based on nucleotide sequence analysis, three isolates were identified as RHDV2 strains, while one isolate was assigned as RHDV1 strain. [ABSTRACT FROM AUTHOR]

Mangrove forests are critical coastal ecosystems that provide great socio‐ecological services, which are also highly vulnerable to climate change, particularly to sea level rise (SLR). Here we assess changes in mangrove forests in four distinct river/tide/wave‐dominant large deltas along the Indo‐Pacific coast based on 1,336 remote sensing images by machine learning techniques. We find that mangroves are migrating seaward at a rate of 18% ± 12% m/yr, which can offset landward mangroves loss, 67% of which caused by land use conversion. The fact that mangroves are expanding seaward with accretion rates exceeding SLR suggests that climate change has not yet triggered substantial loss in deltaic mangrove forests. Assuming that present environmental conditions do not change and that sediment and organic deposition in the deltaic topsets match SLR rates, we project that 90% of deltaic mangrove forests may start to retreat after 132–194 years. Early inundation of mangroves will occur in wave‐dominated delta. Plain Language Summary: Mangrove forests provide significant ecological and societal services, and mitigation global warming. However, large‐scale loss in mangroves could be induced by anthropogenic drivers and sea level rise (SLR). Our study based on deltas along the Indo‐Pacific coast, highlight that mangroves are expanding seaward at a rate of 18% ± 12% m/yr, indicating that there is little impacts from SLR and has not been substantial loss in mangrove forests in these deltas so far. Mangrove expansion here can efficiently offset 67% landward mangrove losses indicates that our new model project that 90% of mangrove shorelines will may start retreating within 132–194 years. We conclude that favoring mangroves expansion seaward would enhance coastal protection and reduce the need of landward mangrove restoration. Key Points: Mangroves along typical deltas are expanding seaward of about 18% ± 12% m/yr, indicating that there is little impacts from sea level riseMangrove expansion here can efficiently offset 67% landward mangrove lossesNew model project that 90% of mangrove fringes may start retreating within 132–194 years, and wave‐dominated delta present early inundation [ABSTRACT FROM AUTHOR]

River sediment supply (Qs) and longshore sediment transport (LST) are recognized as two paramount controls on river delta morphodynamics and stratigraphy. We employed the Delft3D model to simulate the evolution of deltas from fluvial to wave‐dominated conditions, revealing the interplay between river‐ and wave‐driven sediment quantities. Wave‐influenced deltas may show alternating accumulation and retreat patterns driven by avulsions and wave‐induced sediment diffusion, posing coastal management challenges. Deltas with higher wave energy evolve under a fine balance between river supply and intense wave‐mediated sediment redistribution and are highly vulnerable under conditions of sediment reduction. Reducing Qs by ∼40%–70%, common in modern dammed rivers, can rapidly shift bypass from ∼0 to 1 (no bypass to complete bypass). This leads to accelerated diffusion and potential sediment loss in modern deltas. The study highlights the importance of accurately computing sediment quantities in real‐world deltas for improved management, especially under increasing anthropogenic and climatic pressures. Plain Language Summary: Ocean waves, like proficient sculptors, shape the meeting points of rivers and seas—where deltas are created. Under the power of ocean waves, the sediments transported by rivers are organized into distinct patterns. Using an advanced computer model, our research unveils how this interplay affects the physical form of these deltas and their functioning. In certain conditions, the sediment carried by waves can jump over the river mouth and move further along the coastline, contributing to stretching the delta and inducing erosion. Currently, river sediments are getting blocked behind river dams, depriving deltas of their sediment nourishment. As sediment supply decreases, powerful waves at the sea erode deltas more easily, endangering ecosystems, human communities and infrastructure. Because deltas are facing challenges from climate change and increased human activities, informed and innovative management strategies based on better knowledge of natural processes are needed to preserve these valuable coastal regions. Key Points: Deltas transition from avulsion‐dominated with localized depocenters to more diffuse and alongshore‐deflected wave‐dominated depocentersBypass increases and trapping decreases abruptly when longshore transport (LST) at the river mouth equals river sediment transport (Qs)LST under large‐scale blocking due to mouth bar and shoreface adjustment feeds wave‐dominated updrift beach ridge plains (strandplains) [ABSTRACT FROM AUTHOR]

Background: Determination of SARS-CoV-2 variant is significant to prevent the spreads of COVID-19 disease. Methods: We aimed to evaluate the variants of SARS-CoV-2 rate in positive patients in Kanuni Sultan Suleyman Training and Research Hospital (KSS-TRH), Istanbul, Türkiye between 1st January and 30th November 2021 by using RT-PCR method. Results: Herein, 825,169 patients were evaluated (male:58.53% and female:41.47%) whether COVID-19 positive or not [(+):21.3% and (−):78.7%] and 175,367 patient was described as positive (53.2%-female and 46.8%-male) by RT-PCR. COVID-19 positive rate is observed highest in the 6–15- and 66–75-year age range. The frequencies were obtained as SARS-CoV-2 positive (without mutation of B.1.1.7 [B.1.1.7 (U.K), E484K, L452R, B.1.351 (S. Africa/Brazil) spike mutations] as 66.1% (n: 115,899), B.1.1.7 Variant as 23.2% (n:40,686), Delta mutation (L452R) variant as 9.8% (n:17,182), B.1.351 variant as 0.8% (n:1370) and E484K as 0.1% (n: 230). In April 2021, general SARS-CoV-2 and B.1.1.7 variant were dominantly observed. Up to July 2021, B.1.617.2 (Delta variant/ Indian variant) and E484K has been not observed. B.1.351 variant of SARS-CoV-2 has been started in February 2021 at the rarest ratio and March 2021 is the top point. September 2021 is the pick point of E484K. African/Brazil variant of SARS-CoV-2 has been started in February 2021 at the rarest ratio and March 2021 is the top point. September 2021 is the pick point of E484K. When the gender type is compared within the variants, women were found to be more prevalent in all varieties. Conclusions: The meaning of these mutations is very important to understand the transmission capacity of the COVID-19 disease, pandemic episode, and diagnosis of the virus with mutation types. Understanding the variant type is important for monitoring herd immunity and the spread of the disease. [ABSTRACT FROM AUTHOR]

Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19), led to a global pandemic from 2020. In Thailand, five waves of outbreaks were recorded, with the fourth and fifth waves driven by the Delta and Omicron variants, resulting in over 20,000 new confirmed cases daily at their peaks. Methods: This cross-sectional study investigated the associations between clinical symptoms, vaccination status, antibody responses, and post-COVID-19 sequelae in COVID-19 patients. Plasma samples and clinical data were collected from participants admitted to hospitals in Thailand between July 2021 and August 2022, with follow-ups conducted for one year. The study included 110 participants infected with either the Delta (n = 46) or Omicron (n = 64) variants. Virus genotypes were confirmed by RT-PCR of nasal swab RNA and partial nucleotide sequencing of the S gene. IgG and IgA antibody levels against the receptor-binding domain (RBD) of SARS-CoV-2 Delta and Omicron variants were measured in plasma samples using ELISA. Results: Pneumonia was found to be associated with Delta variant infections, while sore throat, congestion or runny nose, and headache were linked to Omicron infections. Vaccination with fewer than two doses and diabetes mellitus were significantly associated with higher disease severity. Specific IgG and IgA antibodies against the RBD of the Delta variant generally rose by day 14 and were maintained for up to two months, whereas the pattern of antibody response to the Omicron variant was less clear. Antibody risings were found to be positively associated with pneumonia, certain underlying conditions (obesity, hypertension, dyslipidemia, and diabetes mellitus), and age ≥ 60 years. Delta variant infections were associated with forgetfulness, hair loss, and headache during the 1-year post-infection period. Females were more likely to experience hair loss, forgetfulness, and joint pain, while older age was associated with joint pain. Conclusions: This study enhances our understanding of SARS-CoV-2 infections in Thais, particularly concerning the Delta and Omicron variants. The findings can inform public health planning and response strategies for future outbreaks of SARS-CoV-2 or other emerging viral diseases. [ABSTRACT FROM AUTHOR]

Background: The global pandemic caused by SARS‐CoV‐2 has underlined the significance of strict genomic surveillance to track virus evolution and the possible emergence of new variants, particularly in densely populated countries like Bangladesh. This study outlines a strategic framework of genomic surveillance to track the evolution of the virus in Bangladesh between June 2021 and December 2022 through the National SARS‐CoV‐2 Variant Surveillance (NSVS) program involving collaboration across 4 major institutes and 13 hospitals nationwide. Methods: We aimed to capture the variants of SARS‐CoV‐2 throughout the country utilizing standardized procedures, modern sequencing technology, and stringent quality control, promoting data accuracy and the timely detection of new variants of concern. We sequenced over 2200 genomes, documenting the prevalence of the Delta variant initially, followed by the emergence of Omicron variants BA.1, BA.2, BA.5, and XBB, each affecting transmission rates and vaccine efficacy differently. Results: The clinical manifestations of the variants differed, with some symptoms occurring more frequently in Delta cases and vice versa. Vaccinated individuals were more affected by Omicron cases compared to Delta cases. These variants were responsible for two major COVID‐19 waves in the country, each with significant clinical effects. Phylogenetic analyses placed the local SARS‐CoV‐2 variants within a global context, indicating the Delta variant likely entered from India and Omicron from Europe. Conclusion: This research highlights the significance of collaborative surveillance strategies for guiding public health choices and the critical role of genomic analysis in monitoring virus evolution, shaping targeted pandemic responses. Bangladesh's contributions significantly enhance global insight into COVID‐19's genomic evolution. [ABSTRACT FROM AUTHOR]

Background: Oral candidiasis has been documented in patients with SARS-CoV-2 infection, with varying prevalence rates across geographic regions and patient demographics. This study aimed to ascertain the incidence, characteristics, and risk factors associated with the development of oral candidiasis in patients hospitalized for SARS-CoV-2 infection in a tertiary infectious diseases hospital in Romania. Methods: A retrospective analysis was conducted on adult patients hospitalized between March 2020 and December 2022 with moderate or severe forms of SARS-CoV-2 infection, for whom a culture of lingual scrapings for Candida spp. was performed. Results: A total of 294 patients were deemed eligible for inclusion in the analysis, with an incidence rate of oral candidiasis of 17.0%. The incidence of oral candidiasis was 4.2 times higher in patients with severe forms of SARS-CoV-2 infection compared to those with moderate forms. Patients with a diagnosis of COVID-19 and oral candidiasis were more likely to receive antibiotics (98.0% vs. 86.1%, p = 0.017) and corticosteroids (100% vs. 83.6%, p = 0.003) than those without oral candidiasis. These findings were associated with a 19% higher relative risk of developing oral candidiasis for patients who received corticosteroid therapy compared to those who did not, and a 13% higher relative risk for those who were administered antibiotics compared to those who were not. The presence of respiratory insufficiency increased the odds of oral candidiasis association 4.7-fold (88.0% vs. 61.1%, p < 0.001). Conclusions: Although the data have been analyzed retrospectively, we have shown that individuals with severe forms of COVID-19 exhibited an elevated risk of developing oral candidiasis. The administration of antibiotics and corticosteroids was identified as a positive predictor for the development of oral candidiasis. The data presented here suggest that a key aspect of the therapeutic management of patients with SARS-CoV-2 infection should include the implementation of preventive measures to minimize the risk of secondary fungal infections. [ABSTRACT FROM AUTHOR]

Rabbit viral haemorrhagic disease (RVHD) is a fatal threat to rabbits causing long-term problems and significant economic losses. In the current study, RVHD was identified and characterised in naturally infected rabbits in order to assess the genetic diversity of RHDV circulating in different Egyptian provinces from January 2019 to January 2022. Nineteen suspected samples were collected from out-breaks that occurred in nine provinces during 2019–2022. Ten liver samples out of nineteen were positive in the slide and plate haemagglutination (HA) test. HA titres ranged from 5 log2 to 12 log2. RHDV-positive liver homogenates were confirmed with RT-PCR and histopathology. Further characterisation of the selected four viral strains was performed by nucleotide sequencing of VP60 gene. Based on nucleotide sequence analysis, three isolates were identified as RHDV2 strains, while one isolate was assigned as RHDV1 strain.

Abstract The emergence of the SARS-CoV-2 virus led to a global pandemic, prompting extensive research efforts to understand its molecular biology, transmission dynamics, and pathogenesis. Recombination events have been increasingly recognized as significant contributor to the virus’s diversity and evolution, potentially leading to the emergence of novel strains with altered biological properties. Indeed, recombinant lineages such as the XBB variant and its descendants have subsequently dominated globally. Therefore, continued surveillance and monitoring of viral genome diversity are crucial to identify and understand the emergence and spread of novel strains. Through routine genomic surveillance of SARS-CoV-2 cases in Norway, we discovered a SARS-CoV-2 recombination event in a long-term infected immunocompromised COVID-19 (coronavirus disease) patient. A deeper investigation showed several recombination events between two distinct lineages of the virus, namely AY.98.1 and BA.5, that resulted in a single novel recombinant viral strain with a unique genetic signature. Our data is consistent with the presence of several concomitant recombinants in the patient, suggesting that these events occur frequently in vivo. This study underscores the importance of continued tracking of viral diversity and the potential impact of recombination events on the evolution of the SARS-CoV-2 virus.

Abstract Background Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19), led to a global pandemic from 2020. In Thailand, five waves of outbreaks were recorded, with the fourth and fifth waves driven by the Delta and Omicron variants, resulting in over 20,000 new confirmed cases daily at their peaks. Methods This cross-sectional study investigated the associations between clinical symptoms, vaccination status, antibody responses, and post-COVID-19 sequelae in COVID-19 patients. Plasma samples and clinical data were collected from participants admitted to hospitals in Thailand between July 2021 and August 2022, with follow-ups conducted for one year. The study included 110 participants infected with either the Delta (n = 46) or Omicron (n = 64) variants. Virus genotypes were confirmed by RT-PCR of nasal swab RNA and partial nucleotide sequencing of the S gene. IgG and IgA antibody levels against the receptor-binding domain (RBD) of SARS-CoV-2 Delta and Omicron variants were measured in plasma samples using ELISA. Results Pneumonia was found to be associated with Delta variant infections, while sore throat, congestion or runny nose, and headache were linked to Omicron infections. Vaccination with fewer than two doses and diabetes mellitus were significantly associated with higher disease severity. Specific IgG and IgA antibodies against the RBD of the Delta variant generally rose by day 14 and were maintained for up to two months, whereas the pattern of antibody response to the Omicron variant was less clear. Antibody risings were found to be positively associated with pneumonia, certain underlying conditions (obesity, hypertension, dyslipidemia, and diabetes mellitus), and age ≥ 60 years. Delta variant infections were associated with forgetfulness, hair loss, and headache during the 1-year post-infection period. Females were more likely to experience hair loss, forgetfulness, and joint pain, while older age was associated with joint pain. Conclusions This study enhances our understanding of SARS-CoV-2 infections in Thais, particularly concerning the Delta and Omicron variants. The findings can inform public health planning and response strategies for future outbreaks of SARS-CoV-2 or other emerging viral diseases.

Abstract Background Determination of SARS-CoV-2 variant is significant to prevent the spreads of COVID-19 disease. Methods We aimed to evaluate the variants of SARS-CoV-2 rate in positive patients in Kanuni Sultan Suleyman Training and Research Hospital (KSS-TRH), Istanbul, Türkiye between 1st January and 30th November 2021 by using RT-PCR method. Results Herein, 825,169 patients were evaluated (male:58.53% and female:41.47%) whether COVID-19 positive or not [( +):21.3% and (−):78.7%] and 175,367 patient was described as positive (53.2%-female and 46.8%-male) by RT-PCR. COVID-19 positive rate is observed highest in the 6–15- and 66–75-year age range. The frequencies were obtained as SARS-CoV-2 positive (without mutation of B.1.1.7 [B.1.1.7 (U.K), E484K, L452R, B.1.351 (S. Africa/Brazil) spike mutations] as 66.1% (n: 115,899), B.1.1.7 Variant as 23.2% (n:40,686), Delta mutation (L452R) variant as 9.8% (n:17,182), B.1.351 variant as 0.8% (n:1370) and E484K as 0.1% (n: 230). In April 2021, general SARS-CoV-2 and B.1.1.7 variant were dominantly observed. Up to July 2021, B.1.617.2 (Delta variant/ Indian variant) and E484K has been not observed. B.1.351 variant of SARS-CoV-2 has been started in February 2021 at the rarest ratio and March 2021 is the top point. September 2021 is the pick point of E484K. African/Brazil variant of SARS-CoV-2 has been started in February 2021 at the rarest ratio and March 2021 is the top point. September 2021 is the pick point of E484K. When the gender type is compared within the variants, women were found to be more prevalent in all varieties. Conclusions The meaning of these mutations is very important to understand the transmission capacity of the COVID-19 disease, pandemic episode, and diagnosis of the virus with mutation types. Understanding the variant type is important for monitoring herd immunity and the spread of the disease.

Aim: To study the manifestations of the COVID-19 epidemic and the clinical and epidemiological characteristics of adult patients with a new coronavirus infection during the dominance of the Delta SARS-COV-2 in the Russian Federation.Materials and Methods: Study included patients aged ≥18 years with a laboratory-confirmed diagnosis of COVID-19, detected in the period from 09/01/2021 to 11/30/2021 (n= 2 619 298) in 85 Russian regions.Results: There were 2 periods of rise and decline in the COVID-19 incidence and mortality during the spread of the Delta SARS-CoV-2 in Russia: June-September and OctoberDecember 2021 (Wald – Wolfowitz criterion, p

Abstract Naumure Multipurpose Project (NMP) featuring a 169 m high Concrete Face Rock Filled Dam (CFRD) is the proposed reservoir project in the West Rapti River with an installed capacity of 218.34 MW. Most of the rivers in Nepal carry significant sediment loads that will consequently catalyze reservoir sedimentation. This phenomenon prevails as the primary factor in reducing reservoirs useful life, making ineffective for both flood control and hydroelectricity generation. Ultimately, such process of sedimentation has adverse impacts on projects economic feasibility and long-term sustainability. Therefore, the objective of this research was to examine the expected sediment deposition pattern in the NMP reservoir throughout its operational period by employing 1D HEC-RAS model to simulate the sedimentation process. The model was simulated for 10, 20, 30, 40 and 50 years. Yang’s equation as a sediment transport function, Active layer as a bed sorting method and Toffaleti as a fall velocity method were best suited for the river reach. The delta deposition was formed between 11 km and 22 km upstream of the dam region in the Jhimruk river, with the sediment deposition depth reaching peaks of about 23 m, 38 m, 39 m, 41 m and 49 m in 10, 20, 30, 40 and 50 years, respectively. Similarly, the delta deposition was formed between 13 km and 33 km upstream of dam region in the Madi river, with the sediment deposition depth reaching peaks of about 47 m, 62 m, 60 m, 68 m and 75 m in 10, 20, 30, 40 and 50 years respectively. Headcutting of delta deposition occurred between 20 and 30 year due to high flood during low stage of reservoir. Furthermore, the study revealed that about 6.22%, 11.61%, 15.94%, 22.96% and 25.65% of the storage capacity of NMP reservoir will be depleted in 10, 20, 30, 40 and 50 years respectively.

Naumure Multipurpose Project (NMP) featuring a 169 m high Concrete Face Rock Filled Dam (CFRD) is the proposed reservoir project in the West Rapti River with an installed capacity of 218.34 MW. Most of the rivers in Nepal carry significant sediment loads that will consequently catalyze reservoir sedimentation. This phenomenon prevails as the primary factor in reducing reservoirs useful life, making ineffective for both flood control and hydroelectricity generation. Ultimately, such process of sedimentation has adverse impacts on projects economic feasibility and long-term sustainability. Therefore, the objective of this research was to examine the expected sediment deposition pattern in the NMP reservoir throughout its operational period by employing 1D HEC-RAS model to simulate the sedimentation process. The model was simulated for 10, 20, 30, 40 and 50 years. Yang's equation as a sediment transport function, Active layer as a bed sorting method and Toffaleti as a fall velocity method were best suited for the river reach. The delta deposition was formed between 11 km and 22 km upstream of the dam region in the Jhimruk river, with the sediment deposition depth reaching peaks of about 23 m, 38 m, 39 m, 41 m and 49 m in 10, 20, 30, 40 and 50 years, respectively. Similarly, the delta deposition was formed between 13 km and 33 km upstream of dam region in the Madi river, with the sediment deposition depth reaching peaks of about 47 m, 62 m, 60 m, 68 m and 75 m in 10, 20, 30, 40 and 50 years respectively. Headcutting of delta deposition occurred between 20 and 30 year due to high flood during low stage of reservoir. Furthermore, the study revealed that about 6.22%, 11.61%, 15.94%, 22.96% and 25.65% of the storage capacity of NMP reservoir will be depleted in 10, 20, 30, 40 and 50 years respectively. [ABSTRACT FROM AUTHOR]

Background: In previous studies, there was an increase in mortality with secondary coinfections in all COVID-19 variants. However, no prior study has explored the association of coinfection with outcomes of hospitalized patients among the COVID-19 variants (Alpha, Delta, and Omicron). Methods: This observational cohort study involved 21,186 patients hospitalized with COVID-19 in 25 hospitals in Texas. Patients were divided into groups by surges of COVID-19: Alpha (November 1, 2020–February 10, 2021), Delta (July 10, 2021–October 14, 2021), and Omicron (December 21, 2021–March 3, 2022). Data were collected from electronic health records using methodology from the Viral Respiratory Illness Universal Study COVID-19 registry (NCT04323787) of COVID-19 hospitalizations. Multivariable Cox-proportional hazard regression model assessed the adjusted effect of different surge periods on mortality. Results: Bacterial coinfections varied among hospitalization surges associated with Alpha (8.5%), Delta (11.7%), and Omicron (11.9%) variants. Adjusted analyses showed a higher 30-day and 90-day mortality in all variants when coinfections were present compared with isolated COVID-19 infection. In particular, 30-day and 90-day mortality were significantly worse with Delta compared to Alpha and Omicron. Conclusions: All variants were associated with a higher mortality when bacterial coinfections were present. Delta was associated with a higher risk-adjusted mortality at 30 days and thereafter. [ABSTRACT FROM AUTHOR]

The relationship between pangolin-CoV and SARS-CoV-2 has been a subject of debate. Further evidence of a special relationship between the two viruses can be found by the fact that all known COVID-19 viruses have an abnormally hard outer shell (low M disorder, i.e., low content of intrinsically disordered residues in the membrane (M) protein) that so far has been found in CoVs associated with burrowing animals, such as rabbits and pangolins, in which transmission involves virus remaining in buried feces for a long time. While a hard outer shell is necessary for viral survival, a harder inner shell could also help. For this reason, the N disorder range of pangolin-CoVs, not bat-CoVs, more closely matches that of SARS-CoV-2, especially when Omicron is included. The low N disorder (i.e., low content of intrinsically disordered residues in the nucleocapsid (N) protein), first observed in pangolin-CoV-2017 and later in Omicron, is associated with attenuation according to the Shell-Disorder Model. Our experimental study revealed that pangolin-CoV-2017 and SARS-CoV-2 Omicron (XBB.1.16 subvariant) show similar attenuations with respect to viral growth and plaque formation. Subtle differences have been observed that are consistent with disorder-centric computational analysis. [ABSTRACT FROM AUTHOR]

Long, J.H.; Hanebuth, T.J.J.; Durica, J.T., and Hawkes, A.D., 2024. Late Holocene stratigraphy and sedimentary facies distribution of an anthropogenically modified delta plain (Santee River Delta, South Carolina, U.S.A.). Journal of Coastal Research, 40(4), 623–646. Charlotte (North Carolina), ISSN 0749-0208. The Santee River of South Carolina has the second largest watershed in the eastern United States and forms the largest river-fed delta along the U.S. east coast. Anthropogenic modifications to the delta plain of the Santee River, and in many coastal environments within the region, have significantly altered the natural configurations of floodplains, channels, and shorelines. This study incorporated historic and modern state-of-the-art data sets and methods to evaluate the sediment distribution within the modern delta plain as well as the record of environmental change throughout the late Holocene as it is preserved within the subsurface stratigraphy. The study incorporated high-resolution seismo-acoustic and bathymetric data, detailed sediment core analysis, accelerator mass spectrometry 14C dating, micropaleontological analysis, and surface sediment samples to define geomorphic zones based on dominant depositional processes related to fluvial discharge, tides, and waves. Tidal- and wave-influenced conditions were established in the delta plain by around 3 kyr BP and continued into historic times, when the construction of rice fields across most of the delta plain fixed channel positions and isolated floodplains from flood-related sedimentation. Sediment distribution in the modern delta plain is significantly influenced by the maintained network of artificial canals and embankments associated with these historic fields. The influence of these modifications can also be seen within the stratigraphy beneath the delta plain, recording local changes in deposition and erosion that resulted from a modification in water circulation and sediment supply. [ABSTRACT FROM AUTHOR]

Throughout the COVID-19 pandemic, the emergence of new viral variants has challenged public health efforts, often evading antibody responses generated by infections and vaccinations. This immune escape has led to waves of breakthrough infections, raising questions about the efficacy and durability of immune protection. Here we focus on the impact of SARS-CoV-2 Delta and Omicron spike mutations on ACE-2 receptor binding, protein stability, and immune response evasion. Delta and Omicron variants had 3–5 times higher binding affinities to ACE-2 than the ancestral strain (KDwt = 23.4 nM, KDDelta = 8.08 nM, KDBA.1 = 4.77 nM, KDBA.2 = 4.47 nM). The pattern recognition molecule mannose-binding lectin (MBL) has been shown to recognize the spike protein. Here we found that MBL binding remained largely unchanged across the variants, even after introducing mutations at single glycan sites. Although MBL binding decreased post-vaccination, it increased by 2.6-fold upon IgG depletion, suggesting a compensatory or redundant role in immune recognition. Notably, we identified two glycan sites (N717 and N801) as potentially essential for the structural integrity of the spike protein. We also evaluated the antibody and T cell responses. Neutralization by serum immunoglobulins was predominantly mediated by IgG rather than IgA and was markedly impaired against the Delta (5.8-fold decrease) and Omicron variants BA.1 (17.4-fold) and BA.2 (14.2-fold). T cell responses, initially conserved, waned rapidly within 3 months post-Omicron infection. Our data suggests that immune imprinting may have hindered antibody and T cell responses toward the variants. Overall, despite decreased antibody neutralization, MBL recognition and T cell responses were generally unaffected by the variants. These findings extend our understanding of the complex interplay between viral adaptation and immune response, underscoring the importance of considering MBL interactions, immune imprinting, and viral evolution dynamics in developing new vaccine and treatment strategies.

ObjectiveTo establish lactate and glucose differences between affected and non-affected limbs in cats with feline arterial thromboembolism (FATE). To evaluate the correlation between these values and survival to discharge as well as congestive heart failure (CHF).MethodsBlood glucose and lactate concentrations were prospectively obtained on admission from client-owned FATE cats and client-owned cats presented for other conditions. The glucose and lactate concentrations of the front limbs (or non-affected) and the hind limbs (or affected) were measured. Lactate (Δlactate) and glucose (Δglucose) differences between the two limbs were calculated.ResultsThe FATE group and control groups included 18 and 41 cats, respectively. The median age of the cats within the FATE group and control groups was 9.5 years and 5 years, respectively. The median Δlactate was significantly higher in the FATE group than in the control group (7.2 mmol/L versus 0.1 mmol/L, respectively; p ≤ 0.01). The median Δglucose was significantly higher in the FATE group than in the control group (155 mg/dL versus 3 mg/dL, respectively; p ≤ 0.01). A diagnosis of FATE was made using a ∆lactate cutoff of 2.2 mmol/L (100% sensitivity and 95% specificity) or a ∆glucose cutoff of 41 mg/dL (100% sensitivity and specificity). There was no correlation between Δlactate and Δglucose and survival to discharge. A higher ∆glucose was significantly associated with concurrent CHF (p = 0.01).ConclusionBoth Δlactate and Δglucose were accurate diagnostic tools for cats with FATE. Neither were correlated with survival to discharge. Higher Δglucose values were significantly associated with the presence of CHF.

Study region: The Minjiang River, located on the western side of the Taiwan Strait of East Asia, serves as a typical mountain river estuary system. Study focus: This research investigates the impact of reduced sediment discharge on the geomorphological changes in the Minjiang River estuary delta and its adjacent coasts. By integrating 45 years of shoreline data and nautical chart bathymetry, the study quantitatively delineates tempo-spatial change patterns and reveals the rapid response mechanisms to sediment discharge decrease. New hydrological insights for the region: The study demonstrates that the sandy shoreline near the Minjiang River estuary exhibits distinct tempo-spatial evolution patterns primarily due to decreased sediment discharge. The estuarine transition zone shows greater coastal resilience, with shoals providing essential sediment sources for development, while the shoreline south of the transition zone experiences progressively delayed erosion. The Minjiang River delta reacts swiftly to decreased sediment discharge, with a response time of significantly under ten years. Despite the temporary influence of extreme weather events such as typhoons on erosion states, continuous sediment discharge decrease remains the dominant factor. These insights highlight the heightened sensitivity and rapid adaptability of mountain rivers to environmental shifts, providing significant implications for understanding the repercussions of human activities on estuarine geomorphological alterations.

During January and February 2022, a huge spike in the cases of COVID-19 was recorded in the Khyber Pakhtunkhwa (KP) province of Pakistan prompting the civil administration to institute new restrictions. To investigate the underlying causes of this surge, the regional Public Health Reference Lab (PHRL) launched a screening effort throughout the Province’s remote and urban areas. Herein, we present our survey results during the peak months of the pandemic. The data indicated the prevalence of highly transmissible delta- and Omicron-like virus variants, which may explain the rise in positive cases. Phylogenetic analysis revealed the genetic association between the sequences from this study and those found in Pakistan as well as from geographically distant countries, suggesting a complex evolutionary history. For screening, we deployed an easy-to-use single primer-based polymerase chain reaction (PCR) assay to identify the circulation of SARS-CoV-2. The assay was validated using clinical swabs of COVID-19 patients and obtained consistent results with Sanger sequencing. Our survey identified a patient simultaneously infected with two variants of concern, indicating the presence of the Deltacron variant, although we cannot discount the possibility of sequencing errors. We recommend that SARS-CoV-2 be continuously monitored to detect single nucleotide polymorphisms (SNPs) that are causally linked to the emergence of new lineages. Our method provides a rapid and cost-effective detection assay for SARS-CoV-2 in a resource-constrained setting.

Since emerging in late 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has repeatedly crossed the species barrier with natural infections reported in various domestic and wild animal species. The emergence and global spread of SARS-CoV-2 variants of concern (VOCs) has expanded the range of susceptible host species. Previous experimental infection studies in cattle using Wuhan-like SARS-CoV-2 isolates suggested that cattle were not likely amplifying hosts for SARS-CoV-2. However, SARS-CoV-2 sero- and RNA-positive cattle have since been identified in Europe, India, and Africa. Here, we investigated the susceptibility and transmission of the Delta and Omicron SARS-CoV-2 VOCs in cattle. Eight Holstein calves were co-infected orally and intranasally with a mixed inoculum of SARS-CoV-2 VOCs Delta and Omicron BA.2. Twenty-four hours post-challenge, two sentinel calves were introduced to evaluate virus transmission. The co-infection resulted in a high proportion of calves shedding SARS-CoV-2 RNA at 1- and 2-days post-challenge (DPC). Extensive tissue distribution of SARS-CoV-2 RNA was observed at 3 and 7 DPC and infectious virus was recovered from two calves at 3 DPC. Next-generation sequencing revealed that only the SARS-CoV-2 Delta variant was detected in clinical samples and tissues. Similar to previous experimental infection studies in cattle, we observed only limited seroconversion and no clear evidence of transmission to sentinel calves. Together, our findings suggest that cattle are more permissive to infection with SARS-CoV-2 Delta than Omicron BA.2 and Wuhan-like isolates but, in the absence of horizontal transmission, are not likely to be reservoir hosts for currently circulating SARS-CoV-2 variants.

The southwestern region of Nigeria, primarily inhabited by the Yoruba people, has a significant Muslim population with a rich history dating back centuries. The establishment of mosques and the spread of Islam in the region was a gradual process that led to the formation of the League of Imams and Alfa in Yorubaland, Edo, and Delta (RābiTah) in 1962. This research examines the history, role, and challenges faced by the RābiTah in advance the interests of Muslims in the region. The research method used is a doctrinal approach with qualitative methods to collect and analyze information related to RābiTah. The study found that, over the years, RābiTah has achieved essential accomplishments such as becoming a respected regional Muslim league, holding annual meetings, resolving disputes, and providing awards to deserving individuals. However, the RābiTah also faced challenges, including encroachments on the Imam's authority, tribalism, political interference, and disputes among the ulama. Additionally, preferences for foreign religious rules and divisions among native clerics posed obstacles to RābiTah's goals. The implications of these findings suggest that to overcome these challenges and achieve its goals, RābiTah must prioritize unity among ulema, establish a governing body for Islamic teachings, learn from international Islamic organizations, advocate for the welfare of Imams, and increase public visibility through educational programs and outreach activities. Hopefully, these recommendations will help Rābitah strengthen its role and contribution to Muslims in the southwest region of Nigeria.

Many cell fate decisions are determined transcriptionally. Accordingly, some fate specification is prevented by Inhibitor of DNA-binding (Id) proteins that interfere with DNA binding by master regulatory transcription factors. We show that the Drosophila Id protein Extra macrochaetae (Emc) also affects developmental decisions by regulating caspase activity. Emc, which prevents proneural bHLH transcription factors from specifying neural cell fate, also prevents homodimerization of another bHLH protein, Daughterless (Da), and thereby maintains expression of the Death-Associated Inhibitor of Apoptosis (diap1) gene. Accordingly, we found that multiple effects of emc mutations on cell growth and on eye development were all caused by activation of caspases. These effects included acceleration of the morphogenetic furrow, failure of R7 photoreceptor cell specification, and delayed differentiation of non-neuronal cone cells. Within emc mutant clones, Notch signaling was elevated in the morphogenetic furrow, increasing morphogenetic furrow speed. This was associated with caspase-dependent increase in levels of Delta protein, the transmembrane ligand for Notch. Posterior to the morphogenetic furrow, elevated Delta cis-inhibited Notch signaling that was required for R7 specification and cone cell differentiation. Growth inhibition of emc mutant clones in wing imaginal discs also depended on caspases. Thus, emc mutations reveal the importance of restraining caspase activity even in non-apoptotic cells to prevent abnormal development, in the Drosophila eye through effects on Notch signaling.

El objetivo de este trabajo es actualizar y mejorar la cartografía existente sobre la distribución espacial de los bosques nativos de la provincia de Buenos Aires. Se desarrolló en el marco de un proyecto de transferencia ejecutado por investigadores del sistema científico tecnológico nacional para la Dirección de Bosques del Ministerio de Ambiente de la Provincia de Buenos Aires. El proyecto se enfocó en diseñar y llevar adelante una metodología para identificar y delimitar coberturas de bosque nativo uniformes para toda la provincia. Para actualizar la cartografía se usó una combinación de información relevada a campo con la interpretación visual de series multitemporales de imágenes ópticas de alta resolución, generalizada usando algoritmos de aprendizaje automático alimentados con información derivada de series de imágenes satelitales multiespectrales Sentinel-2. Los productos obtenidos se evaluaron por medio de la matriz de contingencia calculada a partir de datos etiquetados a campo. Se detalla la metodología utilizada para la clasificación automática, incluyendo la de etiquetado de puntos de entrenamiento, la información espectral empleada para alimentar los clasificadores, la selección de la metodología de clasificación en sí, los detalles del posprocesamiento para cada formación boscosa y la evaluación de los productos finales obtenidos. La delimitación obtenida excluye 235182 ha de las 968397 ha del mapeo vigente —que consideramos no correspondientes a bosque nativo— e incorpora 187512 ha de bosque nativo que no habían sido mapeadas antes. Así, la superficie total de bosque nativo mapeada en la provincia se redujo en 4.9%. La evaluación, realizada mediante 719 puntos etiquetados a campo, asigna una exactitud global de 0.89 y un índice kappa de 0.85 a la clasificación obtenida. Esto indica que la metodología propuesta es adecuada para delimitar bosques nativos en la provincia.

Abstract Mangrove forests are critical coastal ecosystems that provide great socio‐ecological services, which are also highly vulnerable to climate change, particularly to sea level rise (SLR). Here we assess changes in mangrove forests in four distinct river/tide/wave‐dominant large deltas along the Indo‐Pacific coast based on 1,336 remote sensing images by machine learning techniques. We find that mangroves are migrating seaward at a rate of 18% ± 12% m/yr, which can offset landward mangroves loss, 67% of which caused by land use conversion. The fact that mangroves are expanding seaward with accretion rates exceeding SLR suggests that climate change has not yet triggered substantial loss in deltaic mangrove forests. Assuming that present environmental conditions do not change and that sediment and organic deposition in the deltaic topsets match SLR rates, we project that 90% of deltaic mangrove forests may start to retreat after 132–194 years. Early inundation of mangroves will occur in wave‐dominated delta.

Abstract River sediment supply (Qs) and longshore sediment transport (LST) are recognized as two paramount controls on river delta morphodynamics and stratigraphy. We employed the Delft3D model to simulate the evolution of deltas from fluvial to wave‐dominated conditions, revealing the interplay between river‐ and wave‐driven sediment quantities. Wave‐influenced deltas may show alternating accumulation and retreat patterns driven by avulsions and wave‐induced sediment diffusion, posing coastal management challenges. Deltas with higher wave energy evolve under a fine balance between river supply and intense wave‐mediated sediment redistribution and are highly vulnerable under conditions of sediment reduction. Reducing Qs by ∼40%–70%, common in modern dammed rivers, can rapidly shift bypass from ∼0 to 1 (no bypass to complete bypass). This leads to accelerated diffusion and potential sediment loss in modern deltas. The study highlights the importance of accurately computing sediment quantities in real‐world deltas for improved management, especially under increasing anthropogenic and climatic pressures.

Summary: Background: Mouse models that recapitulate key features of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection are important tools for understanding complex interactions between host genetics, immune responses, and SARS-CoV-2 pathogenesis. Little is known about how predominantly cellular (Th1 type) versus humoral (Th2 type) immune responses influence SARS-CoV-2 dynamics, including infectivity and disease course. Methods: We generated knock-in (KI) mice expressing human ACE2 (hACE2) and/or human TMPRSS2 (hTMPRSS2) on Th1-biased (C57BL/6; B6) and Th2-biased (BALB/c) genetic backgrounds. Mice were infected intranasally with SARS-CoV-2 Delta (B.1.617.2) or Omicron BA.1 (B.1.1.529) variants, followed by assessment of disease course, respiratory tract infection, lung histopathology, and humoral and cellular immune responses. Findings: In both B6 and BALB/c mice, hACE2 expression was required for infection of the lungs with Delta, but not Omicron BA.1. Disease severity was greater in Omicron BA.1-infected hTMPRSS2-KI and double-KI BALB/c mice compared with B6 mice, and in Delta-infected double-KI B6 and BALB/c mice compared with hACE2-KI mice. hACE2-KI B6 mice developed more severe lung pathology and more robust SARS-CoV-2-specific splenic CD8 T cell responses compared with hACE2-KI BALB/c mice. There were no notable differences between the two genetic backgrounds in plasma cell, germinal center B cell, or antibody responses to SARS-CoV-2. Interpretation: SARS-CoV-2 Delta and Omicron BA.1 infection, disease course, and CD8 T cell response are influenced by the host genetic background. These humanized mice hold promise as important tools for investigating the mechanisms underlying the heterogeneity of SARS-CoV-2-induced pathogenesis and immune response. Funding: This work was funded by NIH U19 AI142790-02S1, the GHR Foundation, the Arvin Gottleib Foundation, and the Overton family (to SS and EOS); Prebys Foundation (to SS); NIH R44 AI157900 (to KJ); and by an American Association of Immunologists Career Reentry Fellowship (FASB).

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of coronavirus disease (COVID-19), rapidly spread across the globe in 2019. With the emergence of the Omicron variant, COVID-19 shifted into an endemic phase. Given the anticipated rise in cases during the fall and winter seasons, the strategy of implementing seasonal booster vaccines for COVID-19 is becoming increasingly valuable to protect public health. This practice already exists for seasonal influenza vaccines to combat annual influenza seasons. Our goal was to investigate an easily modifiable vaccine platform for seasonal use against SARS-CoV-2. In this study, we evaluated the genetically modified influenza virus ΔNA(RBD) as an intranasal vaccine candidate for COVID-19. This modified virus was engineered to replace the coding sequence for the neuraminidase (NA) protein with a membrane-anchored form of the receptor binding domain (RBD) protein of SARS-CoV-2. We designed experiments to assess the protection of ΔNA(RBD) in K18-hACE2 mice using lethal (Delta) and non-lethal (Omicron) challenge models. Controls of COVID-19 mRNA vaccine and our lab’s previously described intranasal virus like particle vaccine were used as comparisons. Immunization with ΔNA(RBD) expressing ancestral RBD elicited high anti-RBD IgG levels in the serum of mice, high anti-RBD IgA in lung tissue, and improved survival after Delta variant challenge. Modifying ΔNA(RBD) to express Omicron variant RBD shifted variant-specific antibody responses and limited viral burden in the lungs of mice after Omicron variant challenge. Overall, this data suggests that ΔNA(RBD) could be an effective intranasal vaccine platform that generates mucosal and systemic immunity towards SARS-CoV-2.

BackgroundMost research on severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants focuses on initial symptomatology with limited longer-term data. We characterized prevalences of prolonged symptoms 3 months post-SARS-CoV-2 infection across 3 variant time-periods (pre-Delta, Delta, and Omicron).MethodsThis multicenter prospective cohort study of adults with acute illness tested for SARS-CoV-2 compared fatigue severity, fatigue symptoms, organ system-based symptoms, and ≥3 symptoms across variants among participants with a positive ("COVID-positive") or negative SARS-CoV-2 test ("COVID-negative") at 3 months after SARS-CoV-2 testing. Variant periods were defined by dates with ≥50% dominant strain. We performed multivariable logistic regression modeling to estimate independent effects of variants adjusting for sociodemographics, baseline health, and vaccine status.ResultsThe study included 2402 COVID-positive and 821 COVID-negative participants. Among COVID-positives, 463 (19.3%) were pre-Delta, 1198 (49.9%) Delta, and 741 (30.8%) Omicron. The pre-Delta COVID-positive cohort exhibited more prolonged severe fatigue (16.7% vs 11.5% vs 12.3%; P = .017) and presence of ≥3 prolonged symptoms (28.4% vs 21.7% vs 16.0%; P < .001) compared with the Delta and Omicron cohorts. No differences were seen in the COVID-negatives across time-periods. In multivariable models adjusted for vaccination, severe fatigue and odds of having ≥3 symptoms were no longer significant across variants.ConclusionsProlonged symptoms following SARS-CoV-2 infection were more common among participants infected during pre-Delta than with Delta and Omicron; however, these differences were no longer significant after adjusting for vaccination status, suggesting a beneficial effect of vaccination on risk of long-term symptoms. Clinical Trials Registration. NCT04610515.

This study analyzed the role of electric charge in human viral infections. Examples of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), dengue, Ebola, influenza A, and respiratory syncytial virus (RSV) are presented. Charge distribution in SARS-CoV-2 and electrostatic interactions of SARS-CoV-2 with its receptor, angiotensin-converting enzyme 2 (ACE2), were evaluated, and the mean time required for respired SARS-CoV-2 virus attachment was evaluated. The virus–cell attachment modality of all of the above viruses was calculated. The impact of electric charge on other viral-related processes, such as replication of virion material, release, and immune response, was also discussed. Special charge conditions in virus treatments were also indicated.

The article is devoted to the stylometric analysis of stories written by Jorge Luis Borges and Adolfo Bioy Casares under the common pseudonym Honorio Bustos Domecq. The work poses two questions: 1) Is Bustos Domecq’s style different from the writing style of Borges and Bioy Casares? 2) What is the share of influence of each of the co-authors on the formation of Bustos Domecq's style? To solve research problems, it is used Delta method, one of the most reliable stylometric tools to date; as well as the support vector machine, a common machine learning method that is used to solve classification problems. It turns out that Bustos Domecq's style differs from the style of the stories of Borges and Bioy Casares. However, in the texts of Bustos Domecq the authorial signal of Bioy Casares predominates, which is revealed on the basis of both stylometric and historical-literary analysis. The influence of Borges is more clearly manifested only in the first stories (1940s), when Bioy Caceres is a literary disciple of Borges, and in the second half of the 1960s, at a time of serious emotional upheavals for Borges, as well as his world recognition. Analysis of the topics of the stories, where Borges's authorial signal predominates, also confirms the results of stylometric experiments: the story “The Long Search for Tai An”, as well as the first texts of the collection The Chronicles of Bustos Domec “Tribute to Cesar Paladion”, “An Evening with Ramon Bonavena” and others really correspond to the poetics of Borges.

The estuarine delta is a densely populated and economically developed region, and its land use change research is of great significance for regional economic and social development. In this paper, the remote sensing images from 1987 to 2019 are classified, and the digital coastline system is used to analyze the change rate of coastline, and then explore the relationship between the two and the influencing factors. The results indicate that: From 1987 to 2019, the area of construction land, wetlands, and aquaculture ponds increased, with the area of construction land increasing by 57.34 km2, while the area of cultivated land, terrestrial vegetation, and water bodies decreased. From 1987 to 2019, the annual average rate of shoreline advancement was 33.90 m/a, and the direction of shoreline development was seaward extension, indicating that the shoreline was in a state of growth. The change of coastline is strongly associated with the change of land use type. This study provides reference for the protection and utilization of natural resources in the Qin River Delta.

Objectives: Studies have shown temporal changes in post-acute sequelae of COVID-19 (PASC) prevalence for early SARS-CoV-2 variants, although often lacking controls. This prospective study assesses the prevalence of symptoms in Delta- and Omicron-infected cases up to 12 months compared with population controls. Methods: Adult participants filled out surveys every 3 months (T0-T12) between July 2021 and August 2023. Cases were recruited with a positive SARS-CoV-2 test during the Delta or Omicron domination. Population controls were randomly invited from the Dutch Personal Records Database. Participants indicated the presence of 13 PASC-associated symptoms, and severity scores of fatigue, cognitive impairment, dyspnea, and pain. PASC prevalence was defined as the excess prevalence of havingat least one PASC-associated symptom in cases compared with population controls. Results: PASC prevalence was 34.3% at T3 and decreased to 21.7% at T12 for Delta and decreased from 18.7% at T3 to 16.7% at T12 for Omicron. At T12, the difference between Delta and Omicron was not significant. Delta cases generally had higher excess symptom scores for fatigue, dyspnea, and cognitive impairment than Omicron. Conclusions: In the first 9 months after infection, PASC prevalence was higher for Delta than Omicron, but the difference reduced over time and approximated after 12 months.

We seek to completely revise current models of airborne transmission of respiratory viruses by providing never-before-seen atomic-level views of the SARS-CoV-2 virus within a respiratory aerosol. Our work dramatically extends the capabilities of multiscale computational microscopy to address the significant gaps that exist in current experimental methods, which are limited in their ability to interrogate aerosols at the atomic/molecular level and thus obscure our understanding of airborne transmission. We demonstrate how our integrated data-driven platform provides a new way of exploring the composition, structure, and dynamics of aerosols and aerosolized viruses, while driving simulation method development along several important axes. We present a series of initial scientific discoveries for the SARS-CoV-2 Delta variant, noting that the full scientific impact of this work has yet to be realized.

Background and Objectives: The aim of the present work was to compare the characteristics of delta and omicron variants of COVID-19 infection in pregnant women, the association of infection with comorbidity, clinical manifestation of the disease, type of delivery, and pregnancy outcome. Material and Methods: The study was designed as an observational, retrospective study of a single center. The analysis included the cohort of women who had SARS-CoV-2 infection during pregnancy and/or childbirth in the period from 1 March 2020 to 30 June 2023. Results: Out of a total of 675 pregnant women with SARS-CoV-2 infection, 130 gave birth with the delta and 253 with the omicron variant. In our retrospective analysis, pregnant women with both SARS-CoV-2 variants had a mild clinical history in most cases. In the omicron period, a significantly lower incidence of pregnancy loss (p < 0.01) and premature birth (p = 0.62) admission of mothers and newborns to the intensive care unit (p < 0.05) was recorded. Conclusions: In our retrospective analysis, pregnant women with COVID-19 infection generally exhibited a milder clinical manifestation with both variants (delta and omicron) of the viral infection. During the delta-dominant period, ten percent of affected pregnant women experienced a severe clinical history. However, during the omicron-dominant period infection, a significantly lower incidence of complications, pregnancy loss, preterm delivery, and admission of mothers and neonates to the intensive care unit was recorded. This can be partly explained by the greater presence of pregnant women with natural or induced vaccine immunity. [ABSTRACT FROM AUTHOR]

It is important to understand real-world BNT162b2 COVID-19 vaccine effectiveness (VE), especially among racial and ethnic minority groups. We performed a test-negative case-control study to measure BNT162b2 COVID-19 VE in the prevention of COVID-19-associated acute respiratory illness (ARI) hospitalizations at two Atlanta hospitals from May 2021–January 2023 and adjusted for potential confounders by multivariate analysis. Among 5139 eligible adults with ARI, 2763 (53.8%) were enrolled, and 1571 (64.5%) were included in the BNT162b2 analysis. The median age was 58 years (IQR, 44–68), 889 (56.6%) were female, 1034 (65.8%) were African American, 359 (22.9%) were White, 56 (3.6%) were Hispanic ethnicity, 645 (41.1%) were SARS-CoV-2-positive, 412 (26.2%) were vaccinated with a primary series, and 273 (17.4%) had received ≥1 booster of BNT162b2. The overall adjusted VE of the BNT162b2 primary series was 58.5% (95% CI 46.0, 68.1), while the adjusted VE of ≥1 booster was 78.9% (95% CI 70.0, 85.1). The adjusted overall VE of primary series for African American/Black individuals was 64.0% (95% CI 49.9, 74.1) and 82.7% (95% CI 71.9, 89.4) in those who received ≥1 booster. When analysis was limited to the period of Omicron predominance, overall VE of the primary series decreased with widened confidence intervals (24.5%, 95% CI −4.5, 45.4%), while VE of ≥1 booster was maintained at 60.9% (95% CI 42.0, 73.6). BNT162b2 primary series and booster vaccination provided protection against COVID-19-associated ARI hospitalization among a predominantly African American population. [ABSTRACT FROM AUTHOR]

Brain oscillations in humans play a role in a wide range of cognitive processes, including navigation and memory. The oscillatory dynamics contributing to successful spatial memory recall in humans are not well-understood. To investigate specific oscillatory frequency bands during the recall process in human navigation, we recorded electroencephalographic (EEG) activity during a recall trial in healthy young adults (n = 15) following the learning of a goal location in a Virtual Water Maze task. We compared this to the activity during the same trial length, in a group of participants who did not learn a target location and navigated freely but were time-matched to the learning group (non-learning, n = 15). We compared relative power in Delta (2-4Hz), Theta (5-7Hz), Alpha (8-12Hz), Beta (15-29Hz), and Gamma (30-40Hz) bands across the scalp. We found that delta and theta activity were greater during recall in our learning group, as opposed to our non-learning group. We also demonstrated clear suppression in the alpha band at posterior sites during memory-guided navigation compared to our non-learning group. Additionally, when goal-directed navigation switches to focused searching behavior, power becomes greater at the frontal region; with increases in the delta and theta bands reflecting this strategy change. There was also greater beta and gamma activity at posterior sites in our learning group. We discuss the results further in terms of the possible roles and functions of these oscillations during human navigation and hope this exploratory analysis can provide hypotheses for future spatial navigation and memory work. [ABSTRACT FROM AUTHOR]

Background: The study was conducted in the various districts of Punjab, Pakistan, to ascertain the incidence and epidemiology of SARS-CoV-2 variants circulating in the population during the fifth wave of COVID-19. Method: A total of 9603 nasopharyngeal swab samples of suspected patients were collected from the different districts of Punjab from December 2021 to April 2022. In the BSL-3 facility, an auto-extractor (Uni-medica) was used to extract the RNA genome. Viral detection and quantification were performed using real-time reverse transcriptase PCR. Multiplex PCR was used to target different mutations of the spike protein in order to identify SARS-CoV-2 variants. Results: 711 samples were found to be positive from a total of 9603. The Omicron variant of concern (VOC) was the predominant lineage of SARS-CoV-2 circulating at the time of sampling. Ninety-one percent proportion of COVID-19 was caused by the Omicron, followed by the wild variant (3.80%) and Delta (68.11%). Men were found to have a greater Omicron prevalence (47.96%) than women (42.05%). Furthermore, compared to older individuals (32.07%) and younger kids (10.55%), adults had the higher percentage of Omicron (47.39%). Conclusion: This study brought attention to the Omicron variant's circulation in Punjab Province, Pakistan, during the COVID-19 fifth wave. [ABSTRACT FROM AUTHOR]

Background: The effects of SARS-CoV-2 have varied between significant waves of hospitalization. Research question: Are cardiovascular complications different among the first, delta and omicron waves of hospitalized COVID-19 pneumonia patients? Study design and methods: This was a multi-centre retrospective study of patients hospitalized with SARS-CoV-2 pneumonia: 632 were hospitalized during the first wave (March–July 2020), 1013 during the delta wave (September 2020–March 2021), and 323 during the omicron wave (January 2022–July 2022). Patients were stratified by wave and occurrence of cardiovascular events. Results: Among all hospitalized patients with cardiovascular events, patients in the omicron wave were younger (62.4 ± 14 years) than patients in the first wave (67.4 ± 7.8 years) and the delta wave (66.9 ± 12.6 years) and had a higher proportion of non-Hispanic White people than in the first wave (78.6% vs. 61.7%). For COVID19 patients who suffered from cardiovascular events, the omicron wave patients had significantly higher neutrophil/lymphocyte ratio, white blood cell and platelet counts when compared to the first wave. Omicron wave patients had significantly lower albumin and B-type natriuretic peptide levels (only 5.8% of the first wave and 14.6% of the delta wave) when compared to either the first wave or delta wave patients. In COVID-19 patients who suffered cardiovascular events during hospitalization, mortality rate in the omicron wave (26.8%) was significantly lower than the first wave (48.3%), time to mortality for non-survivors of COVID-19 patients who suffered cardiovascular events was significantly longer in the omicron wave (median 16 days) than in the first wave (median 10 days). Conclusions: Younger and white patients were affected with cardiovascular complications more often by the omicron variant. Despite higher neutrophil/ lymphocyte ratio and WBC counts, the omicron patients with cardiovascular events showed lower heart injuries, lower mortality and longer time to mortality for non-survivors when compared to the first and delta waves. [ABSTRACT FROM AUTHOR]

The SARS-CoV-2 Omicron variant became predominant in Turkey in January 2022, coinciding with a rise in SARS-CoV-2–associated hospitalizations. Material and methods. Patients diagnosed with COVID-19 were collected by the infection control committee through an active surveillance program for COVID-19 throughout the pandemic. The hospitalization rate was included in the model to evaluate the relationship between each wave period and disease severity. The basic demographic data of the patients, and the potential risk factors such as comorbid diseases, and laboratory findings were included in the analysis. Results. The rate of patients who were positive in August (26.8%) was found to be significantly lower than in February (45.9%) (p<.001). The proportion of inpatient patients treatment in August (2.3%) was found to be significantly higher than in February (1.2%) (p<.001). In addition, in the omicron variant patients' wave, the neutrophil/lymphocyte ratio was 5.31; and it was observed to be significantly higher than that of the patients (Median = 3.95) in the delta variant wave (p=.023). Discussion. These results provide clinicians with information about the clinical course of COVID-19 patients and are very important for appropriate clinical decision-making in these patients. It is critical to continue to update COVID-19 management protocols based on the latest research. [ABSTRACT FROM AUTHOR]

This study analyzed the role of electric charge in human viral infections. Examples of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), dengue, Ebola, influenza A, and respiratory syncytial virus (RSV) are presented. Charge distribution in SARS-CoV-2 and electrostatic interactions of SARS-CoV-2 with its receptor, a ngiotensin-converting enzyme 2 (ACE2), were evaluated, and the mean time required for respired SARS-CoV-2 virus attachment was evaluated. The virus–cell attachment modality of all of the above viruses was calculated. The impact of electric charge on other viral-related processes, such as replication of virion material, release, and immune response, was also discussed. Special charge conditions in virus treatments were also indicated. [ABSTRACT FROM AUTHOR]

Studies have reported increased rates of long-term neuropsychiatric sequelae after SARS-CoV-2 infection using electronic health-record (EHR) data; however, the majority were conducted before Omicron and booster rollout. We estimated the long-term risks and excess burdens of pre–specified new-incident neuropsychiatric diagnoses after Delta versus Omicron BA.1/2 infection in a highly-vaccinated and boosted cohort of adult Singaporeans. The national SARS-CoV-2 testing registry was used to construct cohorts of Singaporean adults infected during periods of Delta and Omicron BA.1/2 predominance and a contemporaneous test-negative control group. New-incident neuropsychiatric diagnoses recorded in the national health care claims database were identified up to 300 days postinfection. Risks and excess burden were estimated using a doubly robust competing-risks survival analysis. 104 179 and 375 903 infected cases were assigned to Delta and Omicron cohorts and compared against test-negative controls (Delta: N = 666 575 and Omicron: N = 619 379). Elevated risk of cognition or memory disorders was consistently reported across Omicron (Adjusted hazards ratio [aHR], 1.24; 95% CI, 1.12–1.38) and Delta cohorts (aHR, 1.63; 95% CI, 1.39–1.92). Delta-variant infection was associated with an increased risk of anosmia or dysgeusia (aHR, 4.53; 95% CI, 2.78–7.41) and psychosis (aHR, 1.65; 95% CI, 1.22–2.22). By contrast, Omicron-variant infection was associated with a risk of abnormal involuntary movements (aHR, 1.93; 95% CI, 1.32–2.83). Risks of neuropsychiatric sequelae predominantly accrued in hospitalized individuals. A modestly increased risk of cognition and memory disorders at 300 days after SARS-CoV-2 infection was observed among adult Singaporeans infected during the Delta/Omicron BA.1/2 transmission. There was no overall increased risk of neuropsychiatric sequelae observed across other domains. Variant-specific differences were also observed in individual neuropsychiatric sequelae, including an elevated risk of anosmia or dysgeusia after Delta-variant infection. [ABSTRACT FROM AUTHOR]

Introduction: Attentional enhancement has often been identified as the central* cognitive mechanism underlying the benefits of mindfulness meditation. However, the extent to which this enhancement is observable in the neural processes underlying long-term meditation is unclear. This current study aimed to examine differences in attentional performance between meditators and controls (non-meditators) using a visual oddball task with concurrent electroencephalography (EEG) recordings. Methods: Thirty-four participants were recruited, including 16 meditators and 18 healthy controls, who were non-meditators. The participants completed a visual oddball task, using visual stimuli, and EEG recording. Results: Self-reports revealed that meditators had higher mindful attention scores than did the control group. The behavioral results showed that the meditators demonstrated faster reaction times than the non-meditators did. Neural findings indicated a higher P2 amplitude in the meditators than in the controls. The meditators demonstrated a significantly higher P3 in the target trials than in the distractor trials, which was not observed in the controls. Additionally, the time-frequency analysis demonstrated that the delta and theta powers in the meditators were significantly higher than those in the controls. Conclusions: The study suggests the meditators exhibited greater attentional performance than the controls did, as revealed by EEG and behavioral measures. This study extends previous research on the effects of mindfulness meditation on attention and adds to our understanding of the effects of long-term mindfulness meditation. [ABSTRACT FROM AUTHOR]

Objectives: To investigate multi-dose and timings of COVID-19 vaccines in preventing antenatal infection. Design: Prospective observational study investigating primary vaccinations, boosters, antenatal COVID-19 infections, neutralizing antibody (Nab) durability, and cross-reactivity to Delta and Omicron variants of concern (VOCs). Results: Ninety-eight patients completed primary vaccination prepregnancy (29.6%) and antenatally (63.3%), 24.2% of whom had antenatal COVID-19, while 7.1% were unvaccinated (28.6% had antenatal COVID-19). None had severe COVID-19. Prepregnancy vaccination resulted in vaccination-to-infection delay of 23.3 weeks, which extended to 45.2 weeks with a booster, compared to 16.9 weeks following antenatal vaccination (P < 0.001). Infections occurred at 26.2 weeks gestation in women vaccinated prepregnancy compared to 36.2 weeks gestation in those vaccinated during pregnancy (P < 0.007). The risk of COVID-19 infection was higher without antenatal vaccination (hazard ratio [HR] 14.6, P = 0.05) and after prepregnancy vaccination without a booster (HR 10.4, P = 0.002). Antenatal vaccinations initially led to high Nab levels, with mild waning but subsequent rebound. Significant Nab enhancement occurred with a third-trimester booster. Maternal-neonatal Nab transfer was efficient (transfer ratio >1), and cross-reactivity to VOCs was observed. Conclusion: Completing vaccination during any trimester delays COVID-19 infection and maintains effective neutralizing activity throughout pregnancy, with robust cross-reactivity to VOCs and efficient maternal-neonatal transfer.

IntroductionCOVID-19 is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a virus notable for its rapid mutation rate, which has led to the emergence of various variants such as Delta and Omicron, each with potentially different levels of transmissibility and virulence. Therefore, this study aims to compare clinical charactheristics and markers associated with the severity of COVID-19 in hospitalized patients from western Mexico who were infected with the Delta and Omicron variants of SARS-CoV-2.MethodsThis cross-sectional study involved 66 patients hospitalized for COVID-19, diagnosed by RT-qPCR. SARS-CoV-2 variants were identified through whole genome sequencing using the COVIDseq platform from Illumina. Upon admission, patients underwent a clinical history assessment, blood gas analysis, and blood biometry. Additionally, several tests and markers were measured, including the percentage of neutralizing antibodies, erythrocyte sedimentation rate (ESR), interleukin-6 (IL-6), tumor necrosis factor-alpha (TNFα), D-dimer, lactate dehydrogenase (LDH), C-reactive protein (CRP), and ferritin.Results and discussionPatients hospitalized with the Omicron were found to be older, compared to those infected with the Delta (64 vs. 54 years, p = 0.006). Additionally, a higher proportion of male patients were observed in the Omicron compared to the Delta (p = 0.029). Both Omicron and Delta variants were associated with lymphopenia, although the lymphocyte count was lower in Omicron (0.9 vs. 0.56 10x3/L; p = 0.007). The COVID-GRAM scale indicated a high risk for severe disease in both groups, but the score was higher in Omicron compared to Delta (157 vs. 128 points; p = 0.0004). Patients infected with Omicron exhibited a lower percentage of neutralizing antibodies than those with Delta (35.99 vs. 81%; p < 0.05), regardless of their vaccination status. Among the markers assessed, globular ESR was found to be lower in Omicron compared to Delta (30.5 vs. 41.5 mm/h; p = 0.001), while ferritin levels were higher in patients infected with the Omicron (1,359 vs. 960.6 μg/L; p = 0.007). In patients with severe COVID-19, markers such as lymphopenia, neutralizing antibody levels, ferritin, and COVID-GRAM scores are elevated in the Omicron variant, while only the leukocyte count and ESR for the Delta variant.

We present a novel quantitative test of a 50-year-old hypothesis which asserts that river delta morphology is determined by the balance between river and marine influence. We define three metrics to capture the first-order morphology of deltas (shoreline roughness, number of distributary channel mouths, and presence/absence of spits), and use a recently developed sediment flux framework to quantify the river-marine influence. Through analysis of simulated and field deltas we quantitatively demonstrate the relationship between sediment flux balance and delta morphology and show that the flux balance accounts for at least 35% of the variance in the number of distributary channel mouths and 42% of the variance in the shoreline roughness for real-world and simulated deltas. We identify a tipping point in the flux balance where wave influence halts distributary channel formation and show how this explains morphological transitions in real world deltas.

The present study evaluated the effects of compounds targeting extrasynaptic δ subunit-containing γ-aminobutyric acid type A receptors (δ*-GABAARs) to interrogate the role of tonic inhibition in the development of antinociceptive tolerance caused by repeated morphine administration. We investigated the effect of subchronic or acute treatment with non-steroidal positive allosteric modulators (PAMs) of δ*-GABAARs, such as 2-261, on the morphine-antinociceptive tolerance. Mice were treated twice daily with morphine for 9 days and antinociception was measured using the hot water tail immersion test. Co-treatment with 2-261 and morphine prevented morphine-antinociceptive tolerance and acute administration of 2-261 on day 9 was sufficient to reverse the tolerance. Other compounds with activity at δ*-GABAARs also reversed morphine tolerance, whereas an enaminone that lacked activity at δ*-GABAARs did not. Acute administration of 2-261 did not cause an additive or synergistic antinociceptive effect when combined with an acute submaximal dose of morphine. We then used Cre/LoxP recombination to generate GABAA δ-subunit knockout mice to corroborate the pharmacological results. Observations of male δ-knockout mice demonstrated that the δ*-GABAARs was necessary for 2-261 modulation of both analgesic tolerance and somatic withdrawal symptoms produced by subchronic morphine. While female mice still benefited from the positive effects of 2-261, the δ-subunit was not necessary for these effects, highlighting a distinction of the different pathways that could have implications for some of the sex-related differences seen in human opioid-induced outcomes. Consequently, subtype-specific allosteric modulators of GABAARs may warrant further investigation as pharmacological targets to manage tolerance and withdrawal from opioids.