562 results on '"Baril P"'
Search Results
2. Singlet Geminal Wavefunctions
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Johnson, Paul A., Moisset, Jean-David, Gratton, Marianne, Baril, Émile, Plourde, Marc-Antoine, Lefebvre, Mathis, Kerleaux, Marianne, Ayers, Paul W., Cassam-Chenaï, Patrick, De Baerdemacker, Stijn, and Van Neck, Dimitri
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Physics - Chemical Physics - Abstract
Wavefunction forms based on products of electron pairs are usually constructed as closed-shell singlets, which is insufficient when the molecular state has a nonzero spin or when the chemistry is determined by $d$- or $f-$electrons. A set of two-electron forms are considered as explicit couplings of second-quantized operators to open-shell singlets. Geminal wavefunctions are constructed and their structure is elaborated. Numerical results for small model systems clearly demonstrate improvement over closed-shell singlet pairs.
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- 2024
3. The ascent lattice on Dyck paths
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Baril, Jean-Luc, Bousquet-Mélou, Mireille, Kirgizov, Sergey, and Naima, Mehdi
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Mathematics - Combinatorics ,05A15 - Abstract
In the Stanley lattice defined on Dyck paths of size $n$, cover relations are obtained by replacing a valley $DU$ by a peak $UD$. We investigate a greedy version of this lattice, first introduced by Chenevi\`ere, where cover relations replace a factor $DU^k D$ by $U^kD^2$. By relating this poset to another poset recently defined by Nadeau and Tewari, we prove that this still yields a lattice, which we call the ascent lattice $L_n$. We then count intervals in $L_n$. Their generating function is found to be algebraic of degree $3$. The proof is based on a recursive decomposition of intervals involving two catalytic parameters. The solution of the corresponding functional equation is inspired by recent work on the enumeration of walks confined to a quadrant. We also consider the order induced in $L_{mn}$ on $m$-Dyck paths, that is, paths in which all ascent lengths are multiples of $m$, and on mirrored $m$-Dyck paths, in which all descent lengths are multiples of $m$. The first poset $L_{m,n}$ is still a lattice for any $m$, while the second poset $L'_{m,n}$ is only a join semilattice when $m>1$. In both cases, the enumeration of intervals is still described by an equation in two catalytic variables. Interesting connections arise with the sylvester congruence of Hivert, Novelli and Thibon, and again with walks confined to a quadrant. We combine the latter connection with probabilistic results to give asymptotic estimates of the number of intervals in both $L_{m,n}$ and $L'_{m,n}$. Their form implies that the generating functions of intervals are no longer algebraic, nor even D-finite, when $m>1$., Comment: 35 pages
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- 2024
4. Kummer theory for function fields
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Boudreau, Félix Baril and Perucca, Antonella
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Mathematics - Number Theory ,11R18, 11R32, 11R58, 11R60, 11T22 - Abstract
We develop Kummer theory for algebraic function fields in finitely many transcendental variables. We consider any finitely generated Kummer extension (possibly, over a cyclotomic extension) of an algebraic function field, and describe the structure of its Galois group. Our results show in a precise sense how the questions of computing the degrees of these extensions and of computing the group structures of their Galois groups reduce to the corresponding questions for the Kummer extensions of their constant fields., Comment: 14 pages
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- 2024
5. Flattened Catalan Words
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Baril, Jean-Luc, Harris, Pamela E., and Ramírez, José L.
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Mathematics - Combinatorics ,05A15, 05A19 - Abstract
In this work, we define flattened Catalan words as Catalan words whose runs of weak ascents have leading terms that appear in weakly increasing order. We provide generating functions, formulas, and asymptotic expressions for the number of flattened Catalan words based on the number of runs of ascents (descents), runs of weak ascents (descents), $\ell$-valleys, valleys, symmetric valleys, $\ell$-peaks, peaks, and symmetric peaks., Comment: arXiv admin note: substantial text overlap with arXiv:2404.05672
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- 2024
6. Comparing Motion Distortion Between Vehicle Field Deployments
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Samson, Nicolas, Baril, Dominic, Lépine, Julien, and Pomerleau, François
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Computer Science - Robotics - Abstract
Recent advances in autonomous driving for uncrewed ground vehicles (UGVs) have spurred significant development, particularly in challenging terrains. This paper introduces a classification system assessing various UGV deployments reported in the literature. Our approach considers motion distortion features that include internal UGV features, such as mass and speed, and external features, such as terrain complexity, which all influence the efficiency of models and navigation systems. We present results that map UGV deployments relative to vehicle kinetic energy and terrain complexity, providing insights into the level of complexity and risk associated with different operational environments. Additionally, we propose a motion distortion metric to assess UGV navigation performance that does not require an explicit quantification of motion distortion features. Using this metric, we conduct a case study to illustrate the impact of motion distortion features on modeling accuracy. This research advocates for creating a comprehensive database containing many different motion distortion features, which would contribute to advancing the understanding of autonomous driving capabilities in rough conditions and provide a validation framework for future developments in UGV navigation systems., Comment: Accepted to the IEEE ICRA Workshop on Field Robotics 2024
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- 2024
7. The Fine-Grained Complexity of Graph Homomorphism Problems: Towards the Okrasa and Rz\k{a}\.zewski Conjecture
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Baril, Ambroise, Couceiro, Miguel, and Lagerkvist, Victor
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Computer Science - Computational Complexity ,Mathematics - Combinatorics - Abstract
In this paper we are interested in the fine-grained complexity of deciding whether there is a homomorphism from an input graph $G$ to a fixed graph $H$ (the $H$-Coloring problem). The starting point is that these problems can be viewed as constraint satisfaction problems (CSPs), and that (partial) polymorphisms of binary relations are of paramount importance in the study of complexity classes of such CSPs. Thus, we first investigate the expressivity of binary symmetric relations $E_H$ and their corresponding (partial) polymorphisms pPol($E_H$). For irreflexive graphs we observe that there is no pair of graphs $H$ and $H'$ such that pPol($E_H$) $\subseteq$ pPol($E_{H'}$), unless $E_{H'}= \emptyset$ or $H =H'$. More generally we show the existence of an $n$-ary relation $R$ whose partial polymorphisms strictly subsume those of $H$ and such that CSP($R$) is NP-complete if and only if $H$ contains an odd cycle of length at most $n$. Motivated by this we also describe the sets of total polymorphisms of nontrivial cliques, odd cycles, as well as certain cores, and we give an algebraic characterization of projective cores. As a by-product, we settle the Okrasa and Rz\k{a}\.zewski conjecture for all graphs of at most 7 vertices.
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- 2024
8. Enumerating runs, valleys, and peaks in Catalan words
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Baril, Jean-Luc, Harris, Pamela E., Harry, Kimberly J., McClinton, Matt, and Ramírez, José L.
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Mathematics - Combinatorics ,05A15, 05A19 - Abstract
We provide generating functions, formulas, and asymptotic expressions for the number of Catalan words based on the number of runs of ascents (descents), runs of weak ascents (descents), $\ell$-valleys, valleys, symmetric valleys, $\ell$-peaks, peaks, and symmetric peaks. We also establish some bijections with restricted Dyck paths and ordered trees that transports some statistics.
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- 2024
9. Grand zigzag knight's paths
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Baril, Jean-Luc, Hassler, Nathanaël, Kirgizov, Sergey, and Ramírez, José L.
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
We study the enumeration of different classes of grand knight's paths in the plane. In particular, we focus on the subsets of zigzag knight's paths that are subject to constraints. These constraints include ending at $y$-coordinate 0, bounded by a horizontal line, confined within a tube, among other considerations. We present our results using generating functions or direct closed-form expressions. We derive asymptotic results, finding approximations for quantities such as the probability that a zigzag knight's path stays in some area of the plane, or for the average of the altitude of such a path. Additionally, we exhibit some bijections between grand zigzag knight's paths and some pairs of compositions., Comment: 17 pages, 9 figures
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- 2024
10. The Combinatorics of Motzkin Polyominoes
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Baril, Jean-Luc, Kirgizov, Sergey, Ramírez, José L., and Villamizar, Diego
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
A word $w=w_1\cdots w_n$ over the set of positive integers is a Motzkin word whenever $w_1=\texttt{1}$, $1\leq w_k\leq w_{k-1}+1$, and $w_{k-1}\neq w_{k}$ for $k=2, \dots, n$. It can be associated to a $n$-column Motzkin polyomino whose $i$-th column contains $w_i$ cells, and all columns are bottom-justified. We reveal bijective connections between Motzkin paths, restricted Catalan words, primitive \L{}ukasiewicz paths, and Motzkin polyominoes. Using the aforementioned bijections together with classical one-to-one correspondence with Dyck paths avoiding $UDU$s, we provide generating functions with respect to the length, area, semiperimeter, value of the last symbol, and number of interior points of Motzkin polyominoes. We give asymptotics and closed-form expressions for the total area, total semiperimeter, sum of the last symbol values, and total number of interior points over all Motzkin polyominoes of a given length. We also present and prove an engaging trinomial relation concerning the number of cells lying at different levels and first terms of the expanded $(1+x+x^2)^n$., Comment: 21 pages, 11 figures
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- 2024
11. Saturation-Aware Angular Velocity Estimation: Extending the Robustness of SLAM to Aggressive Motions
- Author
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Deschênes, Simon-Pierre, Baril, Dominic, Boxan, Matěj, Laconte, Johann, Giguère, Philippe, and Pomerleau, François
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Computer Science - Robotics - Abstract
We propose a novel angular velocity estimation method to increase the robustness of Simultaneous Localization And Mapping (SLAM) algorithms against gyroscope saturations induced by aggressive motions. Field robotics expose robots to various hazards, including steep terrains, landslides, and staircases, where substantial accelerations and angular velocities can occur if the robot loses stability and tumbles. These extreme motions can saturate sensor measurements, especially gyroscopes, which are the first sensors to become inoperative. While the structural integrity of the robot is at risk, the resilience of the SLAM framework is oftentimes given little consideration. Consequently, even if the robot is physically capable of continuing the mission, its operation will be compromised due to a corrupted representation of the world. Regarding this problem, we propose a way to estimate the angular velocity using accelerometers during extreme rotations caused by tumbling. We show that our method reduces the median localization error by 71.5 % in translation and 65.5 % in rotation and reduces the number of SLAM failures by 73.3 % on the collected data. We also propose the Tumbling-Induced Gyroscope Saturation (TIGS) dataset, which consists of outdoor experiments recording the motion of a lidar subject to angular velocities four times higher than other available datasets. The dataset is available online at https://github.com/norlab-ulaval/Norlab_wiki/wiki/TIGS-Dataset., Comment: 7 pages, 7 figures, submitted to the 2024 IEEE International Conference on Robotics and Automation (ICRA2024), Yokohama, Japan
- Published
- 2023
12. Arithmetic rank bounds for abelian varieties over function fields
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Boudreau, Félix Baril, Gillibert, Jean, and Levin, Aaron
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Mathematics - Number Theory ,Mathematics - Algebraic Geometry ,11G10, 14D10 (Primary) 14G25, 14H40, 14K15 (Secondary) - Abstract
It follows from the Grothendieck-Ogg-Shafarevich formula that the rank of an abelian variety (with trivial trace) defined over the function field of a curve is bounded by a quantity which depends on the genus of the base curve and on bad reduction data. Using a function field version of classical $\ell$-descent techniques, we derive an arithmetic refinement of this bound, extending previous work of the second and third authors from elliptic curves to abelian varieties, and improving on their result in the case of elliptic curves. When the abelian variety is the Jacobian of a hyperelliptic curve, we produce a more explicit $2$-descent map. Then we apply this machinery to studying points on the Jacobians of certain genus $2$ curves over $k(t)$, where $k$ is some perfect base field of characteristic not $2$., Comment: 19 pages. Minor changes in the exposition
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- 2023
13. DRIVE: Data-driven Robot Input Vector Exploration
- Author
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Baril, Dominic, Deschênes, Simon-Pierre, Coupal, Luc, Goffin, Cyril, Lépine, Julien, Giguère, Philippe, and Pomerleau, François
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Computer Science - Robotics - Abstract
An accurate motion model is a fundamental component of most autonomous navigation systems. While much work has been done on improving model formulation, no standard protocol exists for gathering empirical data required to train models. In this work, we address this issue by proposing Data-driven Robot Input Vector Exploration (DRIVE), a protocol that enables characterizing uncrewed ground vehicles (UGVs) input limits and gathering empirical model training data. We also propose a novel learned slip approach outperforming similar acceleration learning approaches. Our contributions are validated through an extensive experimental evaluation, cumulating over 7 km and 1.8 h of driving data over three distinct UGVs and four terrain types. We show that our protocol offers increased predictive performance over common human-driven data-gathering protocols. Furthermore, our protocol converges with 46 s of training data, almost four times less than the shortest human dataset gathering protocol. We show that the operational limit for our model is reached in extreme slip conditions encountered on surfaced ice. DRIVE is an efficient way of characterizing UGV motion in its operational conditions. Our code and dataset are both available online at this link: https://github.com/norlab-ulaval/DRIVE., Comment: 8 pages, 7 figures, 1 table, accepted for publication at the 2024 IEEE International Conference on Robotics and Automation (ICRA2024), Yokohama, Japan
- Published
- 2023
14. A lattice on Dyck paths close to the Tamari lattice
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Baril, Jean-Luc, Kirgizov, Sergey, and Naima, Mehdi
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
We introduce a new poset structure on Dyck paths where the covering relation is a particular case of the relation inducing the Tamari lattice. We prove that the transitive closure of this relation endows Dyck paths with a lattice structure. We provide a trivariate generating function counting the number of Dyck paths with respect to the semilength, the numbers of outgoing and incoming edges in the Hasse diagram. We deduce the numbers of coverings, meet and join irreducible elements. As a byproduct, we present a new involution on Dyck paths that transports the bistatistic of the numbers of outgoing and incoming edges into its reverse. Finally, we give a generating function for the number of intervals, and we compare this number with the number of intervals in the Tamari lattice.
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- 2023
15. Adelic perturbation of rational functions and applications
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Boudreau, Félix Baril, Holmes, Erik, and Nguyen, Khoa D.
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Mathematics - Number Theory ,Primary: 11J25, 13F25. Secondary: 37P35 - Abstract
Let $\sum a_nx^n\in\bar{\mathbb{Q}}[[x]]$ be the power series representation of a rational function and let $f:\ \{0,1,\ldots\}\rightarrow \bar{\mathbb{Q}}$ be a so-called almost quasi-polynomial. Under a necessary stability condition, we prove that $\sum f(n)a_nx^n$ satisfies the P\'olya-Carlson dichotomy: it is either a rational function or it cannot be extended analytically to a strictly larger domain than its disk of convergence. This latter property is much stronger than being transcendental. The first application and motivation of our result is the solution of a conjecture by Byszewski-Cornelissen. This gives a complete understanding of the analytic continuation behavior of the Artin-Mazur zeta function associated to a dynamical system on an abelian variety. Further applications include the solution of a conjecture by Bell-Miles-Ward and a significant case of an open problem by Royals-Ward., Comment: 20 pages
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- 2023
16. Publisher Correction: The net electrostatic potential and hydration of ABCG2 affect substrate transport
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Gose, Tomoka, Aitken, Heather M., Wang, Yao, Lynch, John, Rampersaud, Evadnie, Fukuda, Yu, Wills, Medb, Baril, Stefanie A., Ford, Robert C., Shelat, Anang, O’Mara, Megan L., and Schuetz, John D.
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- 2024
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17. Prevalence of pulmonary tuberculosis and HIV infections and risk factors associated to tuberculosis in detained persons in Antananarivo, Madagascar
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Rakotomanana, Fanjasoa, Dreyfus, Anou, Randrianarisoa, Mirella M., Raberahona, Mihaja, Chevallier, Elodie, Andriamasy, Harizaka E., Bernardson, Barivola A., Ranaivomanana, Paulo, Ralaitsilanihasy, Francklin, Rasoamaharo, Miangaly, Randrianirisoa, Sandro A. N., Razafindranaivo, Turibio A., Rakotobe, Liva, Ratefiharimanana, Andosoa, Randriamanana, Daniella A., Rakotondrazanany, Harolalaina, Cauchoix, Bertrand, Baril, Laurence, Rakotosamimanana, Niaina, and Randremanana, Rindra V.
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- 2024
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18. Tropicalization of Schemes and Sheaves
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Boudreau, Félix Baril and Garay, Cristhian
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Mathematics - Algebraic Geometry ,Mathematics - Combinatorics ,16Y60, 14T10, 06A11, 22A26 - Abstract
Motivated by the definition of tropical schemes and the schematic tropicalization of algebraic varieties defined over a non-Archimedean field, we introduce an algebraic process for the tropicalization of schemes and Zariski sheaves of rings and of modules over them. For us, tropicalization is understood in the broader sense of a process that associates idempotent algebraic objects to the usual ones from algebraic geometry. This goal is achieved by first building the affine case and then globalizing the construction in a functorial way for a fixed affine open covering of a given scheme. Our constructions are possible thanks to the algebraic interpretation of order-theoretic structures through the theory of commutative algebra for idempotent semirings. We define the notions of realizable semirings and realizable semimodules, and we show that they are suitable for our formalism due to the fact that their lattices of subobjects are, in a precise way, a combinatorial reflection of lattices coming from commutative algebra., Comment: 31 pages. In subsection 4.1, we restricted to integral realizable semirings due to technicalities. New results were added to subsection 4.2. The clarity of the exposition was improved in different parts of the text
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- 2023
19. On the Parameterized Complexity of Relaxations of Clique
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Baril, Ambroise, Castillon, Antoine, and Oijid, Nacim
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Computer Science - Computational Complexity ,Computer Science - Discrete Mathematics - Abstract
We investigate the parameterized complexity of several problems formalizing cluster identification in graphs. In other words we ask whether a graph contains a large enough and sufficiently connected subgraph. We study here three relaxations of CLIQUE: $s$-CLUB and $s$-CLIQUE, in which the relaxation is focused on the distances in respectively the cluster and the original graph, and $\gamma$-COMPLETE SUBGRAPH in which the relaxation is made on the minimal degree in the cluster. As these three problems are known to be NP-hard, we study here their parameterized complexities. We prove that $s$-CLUB and $s$-CLIQUE are NP-hard even restricted to graphs of degeneracy $\le 3$ whenever $s \ge 3$, and to graphs of degeneracy $\le 2$ whenever $s \ge 5$, which is a strictly stronger result than its W[1]-hardness parameterized by the degeneracy. We also obtain that these problems are solvable in polynomial time on graphs of degeneracy $1$. Concerning $\gamma$-COMPLETE SUBGRAPH, we prove that it is W[1]-hard parameterized by both the degeneracy, which implies the W[1]-hardness parameterized by the number of vertices in the $\gamma$-complete-subgraph, and the number of elements outside the $\gamma$-complete subgraph.
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- 2023
20. Descent distribution on Catalan words avoiding ordered pairs of Relations
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Baril, Jean-Luc and Ramírez, José Luis
- Subjects
Mathematics - Combinatorics - Abstract
This work is a continuation of some recent articles presenting enumerative results for Catalan words avoiding one or a pair of consecutive or classical patterns of length $3$. More precisely, we provide systematically the bivariate generating function for the number of Catalan words avoiding a given pair of relations with respect to the length and the number of descents. We also present several constructive bijections preserving the number of descents. As a byproduct, we deduce the generating function for the total number of descents on all Catalan words of a given length and avoiding a pair of ordered relations.
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- 2023
21. Partial Motzkin paths with air pockets of the first kind avoiding peaks, valleys or double rises
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Baril, Jean-Luc and Ramírez, José Luis
- Subjects
Mathematics - Combinatorics - Abstract
Motzkin paths with air pockets (MAP) of the first kind are defined as a generalization of Dyck paths with air pockets. They are lattice paths in $\mathbb{N}^2$ starting at the origin made of steps $U=(1,1)$, $D_k=(1,-k)$, $k\geq 1$ and $H=(1,0)$, where two down-steps cannot be consecutive. We enumerate MAP and their prefixes avoiding peaks (resp. valleys, resp. double rise) according to the length, the type of the last step, and the height of its end-point. We express our results using Riordan arrays. Finally, we provide constructive bijections between these paths and restricted Dyck and Motzkin paths., Comment: arXiv admin note: substantial text overlap with arXiv:2212.12404
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- 2023
22. Two kinds of partial Motzkin paths with air pockets
- Author
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Baril, Jean-Luc and Barry, Paul
- Subjects
Mathematics - Combinatorics - Abstract
Motzkin paths with air pockets (MAP) are defined as a generalization of Dyck paths with air pockets by adding some horizontal steps with certain conditions. In this paper, we introduce two generalizations. The first one consists of lattice paths in $\Bbb{N}^2$ starting at the origin made of steps $U=(1,1)$, $D_k=(1,-k)$, $k\geq 1$ and $H=(1,0)$, where two down steps cannot be consecutive, while the second one are lattice paths in $\Bbb{N}^2$ starting at the origin, made of steps $U$, $D_k$ and $H$, where each step $D_k$ and $H$ is necessarily followed by an up step, except for the last step of the path. We provide enumerative results for these paths according to the length, the type of the last step, and the height of its end-point. A similar study is made for these paths read from right to left. As a byproduct, we obtain new classes of paths counted by the Motzkin numbers. Finally, we express our results using Riordan arrays.
- Published
- 2022
23. Short Sleep Duration and Hypertension: A Double Hit for the Brain
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Stephanie Yiallourou, Andree‐Ann Baril, Crystal Wiedner, Xuemei Song, Rebecca Bernal, Dibya Himali, Marina G. Cavuoto, Charles DeCarli, Alexa Beiser, Sudha Seshadri, Jayandra J. Himali, and Matthew P. Pase
- Subjects
cognition ,hypertension ,sleep ,vascular brain injury ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Short sleep duration has been associated with an increased risk of cognitive impairment and dementia. Short sleep is associated with elevated blood pressure, yet the combined insult of short sleep and hypertension on brain health remains unclear. We assessed whether the association of sleep duration with cognition and vascular brain injury was moderated by hypertensive status. Methods and Results A total of 682 dementia‐free participants (mean age, 62±9 years; 53% women) from the Framingham Heart Study completed assessments of cognition, office blood pressure, and self‐reported habitual and polysomnography‐derived sleep duration; 637 underwent brain magnetic resonance imaging. Linear regressions were performed to assess effect modification by hypertensive status on total sleep time (coded in hours) and cognitive and magnetic resonance imaging outcomes. There was a significant interaction between sleep duration and hypertensive status when predicting executive function/processing speed (Trail Making B‐A) and white matter hyperintensities. When results were stratified by hypertensive status, longer sleep duration was associated with better executive functioning/processing speed scores in the hypertensive group (meaning that shorter sleep duration was associated with poorer executive function/processing speed scores) (self‐report sleep: β=0.041 [95% CI, 0.012–0.069], P=0.005; polysomnography sleep: β=0.045 [95% CI, 0.002–0.087], P=0.038), but no association was observed for the normotensive group. Similarly, shorter subjective sleep duration was associated with higher white matter hyperintensity burden in the hypertensive group (β=−0.115 [95% CI, −0.227 to −0.004], P=0.042), but not in the normotensive group. Conclusions In individuals with hypertension, shorter sleep duration was associated with worse cognitive performance and greater brain injury.
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- 2024
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24. Grand zigzag Knight's paths
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Jean-Luc Baril, Nathanaël Hassler, Sergey Kirgizov, and Jos\'e L. Ramırez
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asymptotics ,enumeration ,generating function ,kernel method ,knight’s paths ,Mathematics ,QA1-939 - Published
- 2024
- Full Text
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25. Grand Dyck paths with air pockets
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Baril, Jean-Luc, Kirgizov, Sergey, Maréchal, Rémi, and Vajnovszki, Vincent
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
Grand Dyck paths with air pockets (GDAP) are a generalization of Dyck paths with air pockets by allowing them to go below the $x$-axis. We present enumerative results on GDAP (or their prefixes) subject to various restrictions such as maximal/minimal height, ordinate of the last point and particular first return decomposition. In some special cases we give bijections with other known combinatorial classes., Comment: 20 pages, 4 figures
- Published
- 2022
26. On the Importance of Quantifying Visibility for Autonomous Vehicles under Extreme Precipitation
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Courcelle, Clément, Baril, Dominic, Pomerleau, François, and Laconte, Johann
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Computer Science - Robotics - Abstract
In the context of autonomous driving, vehicles are inherently bound to encounter more extreme weather during which public safety must be ensured. As climate is quickly changing, the frequency of heavy snowstorms is expected to increase and become a major threat to safe navigation. While there is much literature aiming to improve navigation resiliency to winter conditions, there is a lack of standard metrics to quantify the loss of visibility of lidar sensors related to precipitation. This chapter proposes a novel metric to quantify the lidar visibility loss in real time, relying on the notion of visibility from the meteorology research field. We evaluate this metric on the Canadian Adverse Driving Conditions (CADC) dataset, correlate it with the performance of a state-of-the-art lidar-based localization algorithm, and evaluate the benefit of filtering point clouds before the localization process. We show that the Iterative Closest Point (ICP) algorithm is surprisingly robust against snowfalls, but abrupt events, such as snow gusts, can greatly hinder its accuracy. We discuss such events and demonstrate the need for better datasets focusing on these extreme events to quantify their effect., Comment: Submitted to Intelligent Vehicles and Transportation Volume 3 - De Gruyter
- Published
- 2022
27. Prevalence of pulmonary tuberculosis and HIV infections and risk factors associated to tuberculosis in detained persons in Antananarivo, Madagascar
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Fanjasoa Rakotomanana, Anou Dreyfus, Mirella M. Randrianarisoa, Mihaja Raberahona, Elodie Chevallier, Harizaka E. Andriamasy, Barivola A. Bernardson, Paulo Ranaivomanana, Francklin Ralaitsilanihasy, Miangaly Rasoamaharo, Sandro A. N. Randrianirisoa, Turibio A. Razafindranaivo, Liva Rakotobe, Andosoa Ratefiharimanana, Daniella A. Randriamanana, Harolalaina Rakotondrazanany, Bertrand Cauchoix, Laurence Baril, Niaina Rakotosamimanana, and Rindra V. Randremanana
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Medicine ,Science - Abstract
Abstract The incidence rate of tuberculosis in prisons is estimated to be 8 times greater than that in the general population in Madagascar. Our objectives were to estimate the prevalence of pulmonary tuberculosis and HIV infection among prisoners and to identify risk factors associated with tuberculosis. We conducted a cross-sectional study at the central prison of Antananarivo from March to July 2021. Individual male and female inmates aged ≥ 13 years who had lived in the prison for at least three months prior to the study period were included as participants. Acid-fast bacilli detection by microscopy and/or culture, an intradermal tuberculin test, a chest X-ray, and a rapid diagnostic orientation test for HIV were performed. Among 748 participants, 4 (0.5%) were confirmed to have pulmonary tuberculosis. Overall, 14 (1.9%) patients had “confirmed” or “probable” tuberculosis [0.90–2.84, 95% CI]. The proportion of participants with latent tuberculosis infection was 69.6% (517/743) based on a positive tuberculin test without clinical symptoms or radiography images indicating tuberculosis. Out of 745 HIV screening tests, three showed reactive results (0.4%). Age (OR = 4.4, 95% CI [1.4–14.0]) and prior tuberculosis treatment (or episodes) were found to be associated with confirmed and probable tuberculosis.
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- 2024
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28. Component twin-width as a parameter for BINARY-CSP and its semiring generalisations
- Author
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Baril, Ambroise, Couceiro, Miguel, and Lagerkvist, Victor
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Computer Science - Computational Complexity ,Computer Science - Artificial Intelligence - Abstract
We investigate the fine-grained and the parameterized complexity of several generalizations of binary constraint satisfaction problems (BINARY-CSPs), that subsume variants of graph colouring problems. Our starting point is the observation that several algorithmic approaches that resulted in complexity upper bounds for these problems, share a common structure. We thus explore an algebraic approach relying on semirings that unifies different generalizations of BINARY-CSPs (such as the counting, the list, and the weighted versions), and that facilitates a general algorithmic approach to efficiently solving them. The latter is inspired by the (component) twin-width parameter introduced by Bonnet et al., which we generalize via edge-labelled graphs in order to formulate it to arbitrary binary constraints. We consider input instances with bounded component twin-width, as well as constraint templates of bounded component twin-width, and obtain an FPT algorithm as well as an improved, exponential-time algorithm, for broad classes of binary constraints. We illustrate the advantages of this framework by instantiating our general algorithmic approach on several classes of problems (e.g., the $H$-coloring problem and its variants), and showing that it improves the best complexity upper bounds in the literature for several well-known problems., Comment: 25 pages
- Published
- 2022
29. Knight's paths towards Catalan numbers
- Author
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Baril, Jean-Luc and Ramirez, José Luis
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Mathematics - Combinatorics ,05A15, 05A19 - Abstract
We provide enumerating results for partial knight's paths of a given size. We prove algebraically that zigzag knight's paths of a given size ending on the $x$-axis are enumerated by the generalized Catalan numbers, and we give a constructive bijection with peakless Motzkin paths of a given length. After enumerating partial knight's paths of a given length, we prove that zigzag knight's paths of a given length ending on the $x$-axis are counted by the Catalan numbers. Finally, we give a constructive bijection with Dyck paths of a given length.
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- 2022
30. Early graft failure following lower extremity bypass
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Donald T. Baril, MD
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Surgery ,RD1-811 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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31. Arterial spin labeling magnetic resonance imaging quantifies tissue perfusion around foot ulcers
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Pantoja, Joe Luis, Ali, Fadil, Baril, Donald T, Farley, Steven M, Boynton, Scott, Finn, J Paul, Hu, Peng, and Lawrence, Peter F
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Biomedical and Clinical Sciences ,Clinical Sciences ,Biomedical Imaging ,Neurosciences ,Clinical Research ,Diabetes ,Aetiology ,4.1 Discovery and preclinical testing of markers and technologies ,2.1 Biological and endogenous factors ,Detection ,screening and diagnosis ,Arterial spin labeling ,Diabetic foot ulcer ,Perfusion ,Clinical sciences - Abstract
ObjectiveTools that quantify tissue perfusion of the foot are deficient, contributing to the uncertainty in predicting ulcer healing potential. This pilot study aims to quantify peri-wound foot perfusion at various tissue depths using a novel application of pseudo-continuous arterial spin labeling magnetic resonance imaging.MethodsTen diabetic patients with neuropathic wounds and 20 healthy volunteers without wounds were recruited. Wounds were graded according to the Wound, Ischemia, Foot Infection (WIfI) system. All subjects underwent a noncontrasted ASL MRI of the foot for perfusion measurements. For healthy volunteers, perfusion was compared at rest and during sustained toe flexion between four regions: lateral plantar, medial plantar, lateral calcaneal, and medial calcaneal. Evaluations of diabetic volunteers compared perfusion between four zones: wound, near border, far border, and remote. Remote zone perfusion in diabetics was compared with perfusion in the plantar foot of healthy volunteers.ResultsThere were 11 wounds, which were located over the metatarsal heads in five, the stump of a transmetatarsal amputation in three, the heel in two, and the mid foot in one. The median WIfI stage was 2. One patient had a WIfI ischemia grade of 1; the remaining patients' grades were 0. The mean ankle-brachial index was 1.0 ± 0.3. There were two patients with a WIfI foot infection grade of 1; the remaining patients' grades were 0. In healthy volunteers, plantar foot perfusion with sustained toe flexion was 43.9 ± 1.7 mL/100g/min and significantly higher than perfusion at rest (27.3 ± 2.7 mL/100g/min; P < .001). In diabetic patients, perfusion at the wound, near border, far border, and remote regions was 96.1 ± 10.7, 92.7 ± 9.4, 73.4 ± 8.2, and 62.8 ± 2.7 mL/100g/min. Although this perfusion pattern persisted throughout the depth of the wound, perfusion decreased with tissue depth. In the near border, perfusion at 20% of the wound depth was 124.0 ± 35.6 mL/100g/min and 69.9 ± 10.1 mL/100g/min at 100% (P = .006). Lastly, remote perfusion in diabetics was 2.3 times the plantar perfusion in healthy volunteers (27.3 ± 2.7 mL/100g/min; P < .001).ConclusionsThe pattern of resting tissue perfusion around nonischemic diabetic foot ulcers was successfully quantified with arterial spin labeling magnetic resonance imaging. Diabetic patients with wounds were hyperemic compared with healthy volunteers. There was a 1.5-fold increase in peri-wound tissue perfusion relative to the rest of the foot. This study is the first step in developing a tool to assess the perfusion deficit in ischemic wounds.
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- 2022
32. Safety assessment of high doses of vaporized oxalic acid on honey bee worker health and queen quality
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Emilio Enrique Tellarini Prieto, Marco Pietropaoli, Ylona Camus, Marcelo Polizel Camilli, Muhammad Fahim Raza, Midhun Sebastian Jose, Oleksii Obshta, Marina Carla Bezerra da Silva, Ivanna Kozii, Igor Moshynskyy, Thanuri L.K. Edirithilake, Erin Baril, Uros Glavinic, Elemir Simko, and Sarah C. Wood
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bee (Apis mellifera) ,oxalic acid (OA) ,Varroa destructor (Anderson and Trueman) ,vaporized ,dose ,Ecology ,QH540-549.5 ,Science - Abstract
IntroductionThe honey bee ectoparasitic mite, Varroa destructor, is one of the main causes of honey bee colony loss worldwide. Synthetic acaricides are the most commonly used strategy for varroa control, however, resistance to these acaricides has emerged. Consequently, the use of organic acids for varroa control is gaining more interest among beekeepers. For example, oxalic acid (OA) is a natural compound that has been shown to be an effective acaricide against varroa mites, however, the potential toxicity of OA to adult bees and queens is poorly understood. The objective of the study was to evaluate the toxicity of incremental doses of vaporized OA on honey bee workers and queens.MethodsWe exposed 32 colonies to incremental doses (0, 5, 10 or 20 g per colony) of vaporized OA once per week over four consecutive weeks and we monitored the acute and long-term toxicity. We investigated the short-term effects of OA administration by evaluating adult bee mortality, brood production, and population size. Next, we evaluated the long-term effects of OA application on both worker bees and queens. Regarding workers, we investigated their ability to rear new queens. As for queens, we measured acceptance, performance, and sperm quality.ResultsWe found that colonies treated with 20 g OA (20 times the label dose) had a statistically significant increase in worker bee mortality, with a non-significant, 23% decrease in brood relative to controls. No significant differences were observed in queen performance nor sperm quality.DiscussionWe found that repeated application of vaporized OA, at up to 20 times the label dose, had no significant short-term nor long-term, negative effects on colony or queen health, with the exception of a short-term increase in adult bee mortality in the 20 g OA-treated group. The results of this study support the safety of higher-than-label doses of OA for honey bee colonies. The observed increase in adult bee mortality in the 20 g OA dose group in this study suggests that OA doses should be maintained below 20 g per brood chamber.
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- 2024
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33. Metatranscriptomic analysis of common mosquito vector species in the Canadian Prairies
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Cole Baril and Bryan J. Cassone
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Aedes ,Ochlerotatus ,Culex ,viruses ,pathogens ,next-generation sequencing ,Microbiology ,QR1-502 - Abstract
ABSTRACT The microbiome plays vital roles in the life history of mosquitoes, including their development, immunity, longevity, and vector competence. Recent advances in sequencing technologies have allowed for detailed exploration into the diverse microorganisms harbored by these medically important insects. Although these meta-studies have cataloged the microbiomes of mosquitoes in several continents, much of the information currently available for North America is limited to the state of California. In this study, we collected >35,000 mosquitoes throughout Manitoba, Canada, over a 3-year period and then harnessed RNA sequencing and targeted reverse transcriptase-PCR to characterize the microbiomes of the eight most pervasive and important vector and pest species. The consensus microbiome of each species was overwhelmingly composed of viruses but also included fungi, bacteria, protozoa, and parasitic invertebrates. The microbial assemblages were heterogeneous between species, even within the same genus. We detected notable pathogens, including the causal agents of Cache Valley Fever, avian malaria, and canine heartworm. The remaining microbiome consisted largely of putatively insect-specific viruses that are not well characterized, including 17 newly discovered viruses from 10 different families. Future research should focus on evaluating the potential application of these viruses in biocontrol, as biomarkers, and/or in disrupting mosquito vectorial capacity. Interestingly, we also detected viruses that naturally infect honeybees and thrips, which were presumably acquired indirectly through nectar foraging behaviors. Overall, we provide the first comprehensive catalog of the microorganisms harbored by the most common and important mosquito vectors and pests in the Canadian Prairies.IMPORTANCEMosquitoes are the most dangerous animals on the planet, responsible for over 800,000 deaths per year globally. This is because they carry and transmit a plethora of human disease-causing microorganisms, such as West Nile virus and the malaria parasite. Recent innovations in nucleic acid sequencing technologies have enabled researchers unparalleled opportunities to characterize the suite of microorganisms harbored by different mosquito species, including the causal agents of disease. In our study, we carried out 3 years of intensive mosquito surveillance in Canada. We collected and characterized the microorganisms harbored by >35,000 mosquitoes, including the identification of the agents of Cache Valley fever, avian malaria, and canine heartworm. We also detected insect-specific viruses and discovered 17 new viruses that have never been reported. This study, which is the first of its kind in Canada and one of only a handful globally, will greatly aid in future infectious disease research.
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- 2024
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34. Enumeration of partial Lukasiewicz paths
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Baril, Jean-Luc and Prodinger, Helmut
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Mathematics - Combinatorics - Abstract
\L{}ukasiewicz paths are lattice paths in $\Bbb{N}^2$ starting at the origin, ending on the $x$-axis, and consisting of steps in the set $\{(1,k), k\geq -1\}$. We give generating function and exact value for the number of $n$-length prefixes (resp. suffixes) of these paths ending at height $k\geq 0$ with a given type of step. We make a similar study for prefixes of height at most $t\geq 0$. Using the explicit forms for the paths of bounded height, we evaluate the average height asymptotically. For fixed $k$ and $n\to\infty$, this quantity behaves as $\sqrt{\pi n}$. Finally we study (in the same way) prefixes of alternate \L{}ukasiewicz paths, i.e., \L{}ukasiewicz paths that do contain two consecutive steps with the same direction.
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- 2022
35. Named Entity Recognition for Audio De-Identification
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Baril, Guillaume, Cardinal, Patrick, and Koerich, Alessandro Lameiras
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Computer Science - Sound ,Computer Science - Cryptography and Security ,Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
Data anonymization is often a task carried out by humans. Automating it would reduce the cost and time required to complete this task. This paper presents a pipeline to automate the anonymization of audio data in French. We propose a pipeline, which takes audio files with their transcriptions and removes the named entities (NEs) present in the audio. Our pipeline is made up of a forced aligner, which aligns words in an audio transcript with speech and a model that performs named entity recognition (NER). Then, the audio segments that correspond to NEs are substituted with silence to anonymize audio. We compared forced aligners and NER models to find the best ones for our scenario. We evaluated our pipeline on a small hand-annotated dataset, achieving an F1 score of 0.769. This result shows that automating this task is feasible., Comment: 8 pages
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- 2022
36. Contemporary management and outcomes of peripheral venous aneurysms: A multi-institutional study
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Patel, Rhusheet, Woo, Karen, Wakefield, Thomas W, Beaulieu, Robert J, Khashram, Manar, De Caridi, Giovanni, Benedetto, Filippo, Shalhub, Sherene, El-Ghazali, Asmaa, Silpe, Jeffrey E, Rosca, Mihai, Cohnert, Tina U, Siegl, Gregor K, Abularrage, Christopher, Sorber, Rebecca, Wittgen, Catherine M, Bove, Paul G, Long, Graham W, Charlton-Ouw, Kristofer M, Ray, Hunter M, Lawrence, Peter, and Baril, Donald
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Biomedical and Clinical Sciences ,Clinical Sciences ,Neurosciences ,Cardiovascular ,Patient Safety ,Chronic Pain ,Clinical Research ,Pain Research ,Hematology ,6.4 Surgery ,Evaluation of treatments and therapeutic interventions ,Aneurysm ,Anticoagulants ,Fibrinolytic Agents ,Humans ,Lower Extremity ,Pain ,Popliteal Vein ,Pulmonary Embolism ,Retrospective Studies ,Risk Factors ,Venous Thromboembolism ,Deep vein thrombosis ,DVT ,Multi-Institutional ,Venous aneurysm - Abstract
ObjectiveExtremity venous aneurysms result in the risk of pulmonary embolism (PE) and chronic venous insufficiency. At present, owing to the rarity of these aneurysms, no consensus for their treatment has been established. The purpose of the present study was to review the presentation, natural history, and contemporary management of extremity venous aneurysms.MethodsWe performed a retrospective, multi-institutional review of all patients with extremity venous aneurysms treated from 2008 to 2018. A venous aneurysm was defined as saccular or fusiform with an aneurysm/vein ratio of >1.5.ResultsA total of 66 extremity aneurysms from 11 institutions were analyzed, 40 of which were in a popliteal location, 14 iliofemoral, and 12 in an upper extremity or a jugular location. The median follow-up was 27 months (range, 0-120 months). Of the 40 popliteal venous aneurysms, 8 (20%) had presented with deep vein thrombosis (DVT) or PE, 13 (33%) had presented with pain, and 19 had been discovered incidentally. The mean size of the popliteal venous aneurysms presenting with DVT or PE was larger than that of those presenting without thromboembolism (3.8 cm vs 2.5 cm; P = .003). Saccular aneurysm morphology in the lower extremity was associated with thromboembolism (30% vs 9%; P = .046) and fusiform aneurysm morphology with a thrombus burden >25% (45% vs 3%). Patients presenting with thromboembolism were more likely to have had a thrombus burden >25% in their lower extremity venous aneurysm compared with those who had presented without thromboembolism (70% vs 9%). Approximately half of all the patients underwent immediate intervention, and half were managed with observation or antithrombotic regimen. In the non-operative cohort, three patients subsequently developed a DVT. Eight patients in the medically managed cohort went on to require surgical intervention. Of the 12 upper extremity venous aneurysms, none had presented with DVT or PE, and only 2 (17%) had presented with pain. Of the 66 patients in the entire cohort, 41 underwent surgical intervention. The most common indication was the absolute aneurysm size. Nine patients had undergone surgery because of a DVT or PE, and 11 for pain or extremity swelling. The most common surgery was aneurysmorrhaphy in 21 patients (53%), followed by excision and ligation in 14 patients (35%). Five patients (12%) had undergone interposition bypass grafting. A postoperative hematoma requiring reintervention was the most common complication, occurring in three popliteal vein repairs and one iliofemoral vein repair. None of the patients, treated either surgically or medically, had reported post-thrombotic complications during the follow-up period.ConclusionsLarge lower extremity venous aneurysms and saccular aneurysms with thrombus >25% of the lumen are more likely to present with thromboembolic complications. Surgical intervention for lower extremity venous aneurysms is indicated to reduce the risk of venous thromboembolism (VTE) and the need for continued anticoagulation. Popliteal aneurysms >2.5 cm and all iliofemoral aneurysms should be considered for repair. Upper extremity aneurysms do not have a significant risk of VTE and warrant treatment primarily for symptoms other than VTE.
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- 2022
37. Self-reported sleepiness associates with greater brain and cortical volume and lower prevalence of ischemic covert brain infarcts in a community sample
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Baril, Andrée-Ann, Beiser, Alexa S, DeCarli, Charles, Himali, Dibya, Sanchez, Erlan, Cavuoto, Marina, Redline, Susan, Gottlieb, Daniel J, Seshadri, Sudha, Pase, Matthew P, and Himali, Jayandra J
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Biological Psychology ,Psychology ,Neurosciences ,Alzheimer's Disease ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Acquired Cognitive Impairment ,Aging ,Sleep Research ,Behavioral and Social Science ,Neurodegenerative ,Brain Disorders ,Stroke ,Dementia ,Neurological ,Aged ,Apolipoprotein E4 ,Brain ,Brain Infarction ,Female ,Humans ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Prevalence ,Self Report ,Sleepiness ,sleep propensity ,magnetic resonance imaging ,stroke ,infarcts ,gray matter ,cortex ,alzheimer's disease ,dementia ,apolipoprotein E ,sex ,alzheimer’s disease ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biological sciences ,Biomedical and clinical sciences - Abstract
Study objectivesWe evaluated if self-reported sleepiness was associated with neuroimaging markers of brain aging and ischemic damage in a large community-based sample.MethodsParticipants from the Framingham Heart Study Offspring cohort (n = 468, 62.5 ± 8.7 years old, 49.6%M) free of dementia, stroke, and neurological diseases, completed sleep questionnaires and polysomnography followed by magnetic resonance imaging (MRI), 3 years later on average. We used linear and logistic regression models to evaluate the associations between Epworth Sleepiness Scale (ESS) scores and total brain, cortical and subcortical gray matter, and white matter hyperintensities volumes, and the presence of covert brain infarcts.ResultsHigher sleepiness scores were associated with larger total brain volume, greater cortical gray matter volume, and a lower prevalence of covert brain infarcts, even when adjusting for a large array of potential confounders, including demographics, sleep profiles and disorders, organic health diseases, and proxies for daytime cognitive and physical activities. Interactions indicated that more sleepiness was associated with larger cortical gray matter volume in men only and in APOE ε4 noncarriers, whereas a trend for smaller cortical gray matter volume was observed in carriers. In longitudinal analyses, those with stable excessive daytime sleepiness over time had greater total brain and cortical gray matter volumes, whereas baseline sleepiness scores were not associated with subsequent atrophy or cognitive decline.ConclusionOur findings suggest that sleepiness is not necessarily a marker of poor brain health when not explained by diseases or sleep debt and sleep disorders. Rather, sleepiness could be a marker of preserved sleep-regulatory processes and brain health in some cases.
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- 2022
38. Multiple Introductions of Yersinia pestis during Urban Pneumonic Plague Epidemic, Madagascar, 2017
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Voahangy Andrianaivoarimanana, Cyril Savin, Dawn N. Birdsell, Amy J. Vogler, Anne-Sophie Le Guern, Soloandry Rahajandraibe, Sylvie Brémont, Soanandrasana Rahelinirina, Jason W. Sahl, Beza Ramasindrazana, Rado Jean Luc Rakotonanahary, Fanjasoa Rakotomanana, Rindra Randremanana, Viviane Maheriniaina, Vaoary Razafimbia, Aurelia Kwasiborski, Charlotte Balière, Maherisoa Ratsitorahina, Laurence Baril, Paul Keim, Valérie Caro, Voahangy Rasolofo, André Spiegel, Javier Pizarro-Cerda, David M. Wagner, and Minoarisoa Rajerison
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pneumonic plague ,Yersinia pestis ,bacteria ,respiratory infections ,Madagascar ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Pneumonic plague (PP) is characterized by high infection rate, person-to-person transmission, and rapid progression to severe disease. In 2017, a PP epidemic occurred in 2 Madagascar urban areas, Antananarivo and Toamasina. We used epidemiologic data and Yersinia pestis genomic characterization to determine the sources of this epidemic. Human plague emerged independently from environmental reservoirs in rural endemic foci >20 times during August–November 2017. Confirmed cases from 5 emergences, including 4 PP cases, were documented in urban areas. Epidemiologic and genetic analyses of cases associated with the first emergence event to reach urban areas confirmed that transmission started in August; spread to Antananarivo, Toamasina, and other locations; and persisted in Antananarivo until at least mid-November. Two other Y. pestis lineages may have caused persistent PP transmission chains in Antananarivo. Multiple Y. pestis lineages were independently introduced to urban areas from several rural foci via travel of infected persons during the epidemic.
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- 2024
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39. Dyck paths with catastrophes modulo the positions of a given pattern
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Baril, Jean-Luc, Kirgizov, Sergey, and Petrossian, Armen
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
For any pattern $p$ of length at most two, we provide generating functions and asymptotic approximations for the number of $p$-equivalence classes of Dyck paths with catastrophes, where two paths of the same length are $p$-equivalent whenever the positions of the occurrences of the pattern $p$ are the same., Comment: 25 pages, 14 figures, 1 table
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- 2022
40. Enumeration of Dyck paths with air pockets
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Baril, Jean-Luc, Kirgizov, Sergey, Maréchal, Rémi, and Vajnovszki, Vincent
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Computer Science - Discrete Mathematics ,Mathematics - Combinatorics - Abstract
We introduce and study the new combinatorial class of Dyck paths with air pockets. We exhibit a bijection with the peakless Motzkin paths which transports several pattern statistics and give bivariate generating functions for the distribution of patterns as peaks, returns and pyramids. Then, we deduce the popularities and asymptotic expectations of these patterns and point out a link between the popularity of pyramids and a special kind of closed smooth self-overlapping curves, a subset of Fibonacci meanders. A similar study is conducted for non-decreasing Dyck paths with air pockets., Comment: 20 pages, 3 figures, 2 tables
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- 2022
41. Publisher Correction: The net electrostatic potential and hydration of ABCG2 affect substrate transport
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Tomoka Gose, Heather M. Aitken, Yao Wang, John Lynch, Evadnie Rampersaud, Yu Fukuda, Medb Wills, Stefanie A. Baril, Robert C. Ford, Anang Shelat, Megan L. O’Mara, and John D. Schuetz
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Science - Published
- 2024
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42. Kilometer-scale autonomous navigation in subarctic forests: challenges and lessons learned
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Baril, Dominic, Deschênes, Simon-Pierre, Gamache, Olivier, Vaidis, Maxime, LaRocque, Damien, Laconte, Johann, Kubelka, Vladimír, Giguère, Philippe, and Pomerleau, François
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Computer Science - Robotics - Abstract
Challenges inherent to autonomous wintertime navigation in forests include lack of reliable a Global Navigation Satellite System (GNSS) signal, low feature contrast, high illumination variations and changing environment. This type of off-road environment is an extreme case of situations autonomous cars could encounter in northern regions. Thus, it is important to understand the impact of this harsh environment on autonomous navigation systems. To this end, we present a field report analyzing teach-and-repeat navigation in a subarctic forest while subject to fluctuating weather, including light and heavy snow, rain and drizzle. First, we describe the system, which relies on point cloud registration to localize a mobile robot through a boreal forest, while simultaneously building a map. We experimentally evaluate this system in over 18.8 km of autonomous navigation in the teach-and-repeat mode. Over 14 repeat runs, only four manual interventions were required, three of which were due to localization failure and another one caused by battery power outage. We show that dense vegetation perturbs the GNSS signal, rendering it unsuitable for navigation in forest trails. Furthermore, we highlight the increased uncertainty related to localizing using point cloud registration in forest trails. We demonstrate that it is not snow precipitation, but snow accumulation, that affects our system's ability to localize within the environment. Finally, we expose some challenges and lessons learned from our field campaign to support better experimental work in winter conditions. Our dataset is available online., Comment: Published in Field Robotics Volume 2. Paper number 50
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- 2021
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43. $L$-Functions of Elliptic Curves Modulo Integers
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Boudreau, Félix Baril
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Mathematics - Number Theory ,11G40 - Abstract
In 1985, Schoof devised an algorithm to compute zeta functions of elliptic curves over finite fields by directly computing the numerators of these rational functions modulo sufficiently many primes (see \cite{schoof_1985}). If $E/K$ is an elliptic curve with nonconstant $j$-invariant defined over a function field $K$ of characteristic $p \geq 5$, we know that its $L$-function $L(T,E/K)$ is a polynomial in $\mathbb{Z}[T]$ (see \cite[p.11]{katz_2002}). Inspired by Schoof, we study the reduction of $L(T,E/K)$ modulo integers. We obtain three main results. Firstly, if $E/K$ has non-trivial $K$-rational $N$-torsion for some integer $N$ coprime with $p$, we extend a formula for $L(T,E/K) \bmod N$ due to Hall (see \cite[p.133, Theorem 4]{hall_2006}) to all quadratic twists $E_f/K$ with $f \in K^\times \smallsetminus K^{\times 2}$. Secondly, without any condition on the $2$-torsion subgroup of $E(K)$, we give a formula for the quotient modulo $2$ of $L$-functions of any two quadratic twists of $E/K$. Thirdly, we use these results to compute the global root numbers of an infinite family of quadratic twists of an elliptic curve and in most cases find the exact analytic rank of each of these twists. We also illustrate that in favourable situations our second main result allows one to compute much more efficiently $L(T,E_f/K) \bmod 2$ than an algorithm of Baig and Hall (see \cite{baig_hall_2012}). Finally, we use our formulas to compute directly some degree $2$ $L$-functions., Comment: 29 pages [previously 10 pages]. Expanded version of Chapter 3 of the PhD thesis of the author. Comments welcome
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- 2021
44. System for multi-robotic exploration of underground environments CTU-CRAS-NORLAB in the DARPA Subterranean Challenge
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Rouček, Tomáš, Pecka, Martin, Čížek, Petr, Petříček, Tomáš, Bayer, Jan, Šalanský, Vojtěch, Azayev, Teymur, Heřt, Daniel, Petrlík, Matěj, Báča, Tomáš, Spurný, Vojtěch, Krátký, Vít, Petráček, Pavel, Baril, Dominic, Vaidis, Maxime, Kubelka, Vladimír, Pomerleau, François, Faigl, Jan, Zimmermann, Karel, Saska, Martin, Svoboda, Tomáš, and Krajník, Tomáš
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Computer Science - Robotics - Abstract
We present a field report of CTU-CRAS-NORLAB team from the Subterranean Challenge (SubT) organised by the Defense Advanced Research Projects Agency (DARPA). The contest seeks to advance technologies that would improve the safety and efficiency of search-and-rescue operations in GPS-denied environments. During the contest rounds, teams of mobile robots have to find specific objects while operating in environments with limited radio communication, e.g. mining tunnels, underground stations or natural caverns. We present a heterogeneous exploration robotic system of the CTU-CRAS-NORLAB team, which achieved the third rank at the SubT Tunnel and Urban Circuit rounds and surpassed the performance of all other non-DARPA-funded teams. The field report describes the team's hardware, sensors, algorithms and strategies, and discusses the lessons learned by participating at the DARPA SubT contest., Comment: This paper have already been accepted to be published Filed Robotics special issue about DARPA SubT challange
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- 2021
45. Lattice paths with a first return decomposition constrained by the maximal height of a pattern
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Baril, Jean-Luc and Kirgizov, Sergey
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics - Abstract
We consider the system of equations $A_k(x)=p(x)A_{k-1}(x)(q(x)+\sum_{i=0}^k A_i(x))$ for $k\geq r+1$ where $A_i(x)$, $0\leq i \leq r$, are some given functions and show how to obtain a close form for $A(x)=\sum_{k\geq 0}A_k(x)$. We apply this general result to the enumeration of certain subsets of Dyck, Motzkin, skew Dyck, and skew Motzkin paths, defined recursively according to the first return decomposition with a monotonically non-increasing condition relative to the maximal ordinate reached by an occurrence of a given pattern $\pi$., Comment: 6 pages, 4 tables
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- 2021
46. The net electrostatic potential and hydration of ABCG2 affect substrate transport
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Gose, Tomoka, Aitken, Heather M., Wang, Yao, Lynch, John, Rampersaud, Evadnie, Fukuda, Yu, Wills, Medb, Baril, Stefanie A., Ford, Robert C., Shelat, Anang, O’Mara, Megan L., and Schuetz, John D.
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- 2023
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47. A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici
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Baril, Tobias and Croll, Daniel
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- 2023
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48. The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe
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Lee, Ivy H. T., Nong, Wenyan, So, Wai Lok, Cheung, Chris K. H., Xie, Yichun, Baril, Toby, Yip, Ho Yin, Swale, Thomas, Chan, Simon K. F., Wei, Yingying, Lo, Nathan, Hayward, Alexander, Chan, Ting Fung, Lam, Hon-ming, and Hui, Jerome H. L.
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- 2023
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49. The influence of weather on the population dynamics of common mosquito vector species in the Canadian Prairies
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Baril, Cole, Pilling, Ben G., Mikkelsen, Milah J., Sparrow, Jessica M., Duncan, Carlyn A. M., Koloski, Cody W., LaZerte, Stefanie E., and Cassone, Bryan J.
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- 2023
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50. Mixed methods to evaluate knowledge, attitudes and practices (KAP) towards rabies in central and remote communities of Moramanga district, Madagascar.
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Claire Leblanc, Daouda Kassié, Mendrika Ranaivoharimina, Elliot Fara Nandrasana Rakotomanana, Reziky Tiandraza Mangahasimbola, Anjasoa Randrianarijaona, Ravo Ramiandrasoa, Alphonse José Nely, Nivohanitra Perle Razafindraibe, Soa Fy Andriamandimby, Dany Bakoly Ranoaritiana, Virginie Rajaonarivony, Laurence Randrianasolo, Laurence Baril, Chiarella Mattern, Rila Ratovoson, and Hélène Guis
- Subjects
Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Control of dog-mediated rabies relies on raising awareness, access to post-exposure prophylaxis (PEP) and mass dog vaccination. To assess rabies awareness in Moramanga district, Madagascar, where rabies is endemic, two complementary quantitative and qualitative approaches were carried out in 2018. In the quantitative approach, a standardized questionnaire was administered to 334 randomized participants living in 170 households located less than 5 km from the anti-rabies treatment center (ARTC) located in Moramanga city (thereafter called the central area), and in 164 households located more than 15 km away from the ARTC in two rural communes (thereafter called the remote area). Logistic regression models were fitted to identify factors influencing knowledge and practice scores. The qualitative approach consisted in semi-structured interviews conducted with 28 bite victims who had consulted the ARTC, three owners of biting dogs, three ARTC staff and two local authorities. Overall, 15.6% (52/334) of households owned at least one dog. The dog-to-human ratio was 1:17.6. The central area had a significantly higher dog bite incidence (0.53 per 100 person-years, 95% CI: 0.31-0.85) compared to the remote area (0.22 per 100 person-years, 95% CI: 0.09-0.43) (p = 0.03). The care pathway following a bite depended on wound severity, how the dog was perceived and its owner's willingness to cover costs. Rabies vaccination coverage in dogs in the remote area was extremely low (2.4%). Respondents knew that vaccination prevented animal rabies but owners considered that their own dogs were harmless and cited access and cost of vaccine as main barriers. Most respondents were not aware of the existence of the ARTC (85.3%), did not know the importance of timely access to PEP (92.2%) or that biting dogs should be isolated (89.5%) and monitored. Good knowledge scores were significantly associated with having a higher socio-economic status (OR = 2.08, CI = 1.33-3.26) and living in central area (OR = 1.91, CI = 1.22-3.00). Good practice scores were significantly associated with living in central area (OR = 4.78, CI = 2.98-7.77) and being aware of the ARTC's existence (OR = 2.29, CI = 1.14-4.80). In Madagascar, knowledge on rabies was disparate with important gaps on PEP and animal management. Awareness campaigns should inform communities (i) on the importance of seeking PEP as soon as possible after an exposure, whatever the severity of the wound and the type of biting dog who caused it, and (ii) on the existence and location of ARTCs where free-of-charge PEP is available. They should also encourage owners to isolate and monitor the health of biting dogs. Above all, awareness and dog vaccination campaigns should be designed so as to reach the more vulnerable remote rural populations as knowledge, good practices and vaccination coverage were lower in these areas. They should also target households with a lower socio-economic status. If awareness campaigns are likely to succeed in improving access to ARTCs in Madagascar, their impact on prompting dog owners to vaccinate their own dogs seems more uncertain given the financial and access barriers. Therefore, to reach the 70% dog vaccination coverage goal targeted in rabies elimination programs, awareness campaigns must be combined with free-of-charge mass dog vaccination.
- Published
- 2024
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