38 results on '"Milne CJ"'
Search Results
2. Influence of pump laser fluence on ultrafast myoglobin structural dynamics.
- Author
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Barends TRM, Gorel A, Bhattacharyya S, Schirò G, Bacellar C, Cirelli C, Colletier JP, Foucar L, Grünbein ML, Hartmann E, Hilpert M, Holton JM, Johnson PJM, Kloos M, Knopp G, Marekha B, Nass K, Nass Kovacs G, Ozerov D, Stricker M, Weik M, Doak RB, Shoeman RL, Milne CJ, Huix-Rotllant M, Cammarata M, and Schlichting I
- Subjects
- Crystallography instrumentation, Crystallography methods, Electrons, Photons, Protein Conformation radiation effects, Quantum Theory, X-Rays, Artifacts, Lasers, Myoglobin chemistry, Myoglobin metabolism, Myoglobin radiation effects
- Abstract
High-intensity femtosecond pulses from an X-ray free-electron laser enable pump-probe experiments for the investigation of electronic and nuclear changes during light-induced reactions. On timescales ranging from femtoseconds to milliseconds and for a variety of biological systems, time-resolved serial femtosecond crystallography (TR-SFX) has provided detailed structural data for light-induced isomerization, breakage or formation of chemical bonds and electron transfer
1,2 . However, all ultrafast TR-SFX studies to date have employed such high pump laser energies that nominally several photons were absorbed per chromophore3-17 . As multiphoton absorption may force the protein response into non-physiological pathways, it is of great concern18,19 whether this experimental approach20 allows valid conclusions to be drawn vis-à-vis biologically relevant single-photon-induced reactions18,19 . Here we describe ultrafast pump-probe SFX experiments on the photodissociation of carboxymyoglobin, showing that different pump laser fluences yield markedly different results. In particular, the dynamics of structural changes and observed indicators of the mechanistically important coherent oscillations of the Fe-CO bond distance (predicted by recent quantum wavepacket dynamics21 ) are seen to depend strongly on pump laser energy, in line with quantum chemical analysis. Our results confirm both the feasibility and necessity of performing ultrafast TR-SFX pump-probe experiments in the linear photoexcitation regime. We consider this to be a starting point for reassessing both the design and the interpretation of ultrafast TR-SFX pump-probe experiments20 such that mechanistically relevant insight emerges., (© 2024. The Author(s).)- Published
- 2024
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3. Disentangling the evolution of electrons and holes in photoexcited ZnO nanoparticles.
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Milne CJ, Nagornova N, Pope T, Chen HY, Rossi T, Szlachetko J, Gawelda W, Britz A, van Driel TB, Sala L, Ebner S, Katayama T, Southworth SH, Doumy G, March AM, Lehmann CS, Mucke M, Iablonskyi D, Kumagai Y, Knopp G, Motomura K, Togashi T, Owada S, Yabashi M, Nielsen MM, Pajek M, Ueda K, Abela R, Penfold TJ, and Chergui M
- Abstract
The evolution of charge carriers in photoexcited room temperature ZnO nanoparticles in solution is investigated using ultrafast ultraviolet photoluminescence spectroscopy, ultrafast Zn K-edge absorption spectroscopy, and ab initio molecular dynamics (MD) simulations. The photoluminescence is excited at 4.66 eV, well above the band edge, and shows that electron cooling in the conduction band and exciton formation occur in <500 fs, in excellent agreement with theoretical predictions. The x-ray absorption measurements, obtained upon excitation close to the band edge at 3.49 eV, are sensitive to the migration and trapping of holes. They reveal that the 2 ps transient largely reproduces the previously reported transient obtained at 100 ps time delay in synchrotron studies. In addition, the x-ray absorption signal is found to rise in ∼1.4 ps, which we attribute to the diffusion of holes through the lattice prior to their trapping at singly charged oxygen vacancies. Indeed, the MD simulations show that impulsive trapping of holes induces an ultrafast expansion of the cage of Zn atoms in <200 fs, followed by an oscillatory response at a frequency of ∼100 cm
-1 , which corresponds to a phonon mode of the system involving the Zn sub-lattice., Competing Interests: The authors have no conflicts to disclose., (© 2023 Author(s).)- Published
- 2023
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4. Ultrafast structural changes direct the first molecular events of vision.
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Gruhl T, Weinert T, Rodrigues MJ, Milne CJ, Ortolani G, Nass K, Nango E, Sen S, Johnson PJM, Cirelli C, Furrer A, Mous S, Skopintsev P, James D, Dworkowski F, Båth P, Kekilli D, Ozerov D, Tanaka R, Glover H, Bacellar C, Brünle S, Casadei CM, Diethelm AD, Gashi D, Gotthard G, Guixà-González R, Joti Y, Kabanova V, Knopp G, Lesca E, Ma P, Martiel I, Mühle J, Owada S, Pamula F, Sarabi D, Tejero O, Tsai CJ, Varma N, Wach A, Boutet S, Tono K, Nogly P, Deupi X, Iwata S, Neutze R, Standfuss J, Schertler G, and Panneels V
- Subjects
- Animals, Binding Sites radiation effects, Crystallography, Heterotrimeric GTP-Binding Proteins chemistry, Heterotrimeric GTP-Binding Proteins metabolism, Isomerism, Photons, Protein Binding radiation effects, Protein Conformation radiation effects, Retinaldehyde chemistry, Retinaldehyde metabolism, Retinaldehyde radiation effects, Time Factors, Rhodopsin chemistry, Rhodopsin metabolism, Rhodopsin radiation effects, Vision, Ocular physiology, Vision, Ocular radiation effects
- Abstract
Vision is initiated by the rhodopsin family of light-sensitive G protein-coupled receptors (GPCRs)
1 . A photon is absorbed by the 11-cis retinal chromophore of rhodopsin, which isomerizes within 200 femtoseconds to the all-trans conformation2 , thereby initiating the cellular signal transduction processes that ultimately lead to vision. However, the intramolecular mechanism by which the photoactivated retinal induces the activation events inside rhodopsin remains experimentally unclear. Here we use ultrafast time-resolved crystallography at room temperature3 to determine how an isomerized twisted all-trans retinal stores the photon energy that is required to initiate the protein conformational changes associated with the formation of the G protein-binding signalling state. The distorted retinal at a 1-ps time delay after photoactivation has pulled away from half of its numerous interactions with its binding pocket, and the excess of the photon energy is released through an anisotropic protein breathing motion in the direction of the extracellular space. Notably, the very early structural motions in the protein side chains of rhodopsin appear in regions that are involved in later stages of the conserved class A GPCR activation mechanism. Our study sheds light on the earliest stages of vision in vertebrates and points to fundamental aspects of the molecular mechanisms of agonist-mediated GPCR activation., (© 2023. The Author(s).)- Published
- 2023
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5. Atomic-scale observation of solvent reorganization influencing photoinduced structural dynamics in a copper complex photosensitizer.
- Author
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Katayama T, Choi TK, Khakhulin D, Dohn AO, Milne CJ, Vankó G, Németh Z, Lima FA, Szlachetko J, Sato T, Nozawa S, Adachi SI, Yabashi M, Penfold TJ, Gawelda W, and Levi G
- Abstract
Photochemical reactions in solution are governed by a complex interplay between transient intramolecular electronic and nuclear structural changes and accompanying solvent rearrangements. State-of-the-art time-resolved X-ray solution scattering has emerged in the last decade as a powerful technique to observe solute and solvent motions in real time. However, disentangling solute and solvent dynamics and how they mutually influence each other remains challenging. Here, we simultaneously measure femtosecond X-ray emission and scattering to track both the intramolecular and solvation structural dynamics following photoexcitation of a solvated copper photosensitizer. Quantitative analysis assisted by molecular dynamics simulations reveals a two-step ligand flattening strongly coupled to the solvent reorganization, which conventional optical methods could not discern. First, a ballistic flattening triggers coherent motions of surrounding acetonitrile molecules. In turn, the approach of acetonitrile molecules to the copper atom mediates the decay of intramolecular coherent vibrations and induces a further ligand flattening. These direct structural insights reveal that photoinduced solute and solvent motions can be intimately intertwined, explaining how the key initial steps of light harvesting are affected by the solvent on the atomic time and length scale. Ultimately, this work takes a step forward in understanding the microscopic mechanisms of the bidirectional influence between transient solvent reorganization and photoinduced solute structural dynamics., Competing Interests: The authors declare no competing interests., (This journal is © The Royal Society of Chemistry.)
- Published
- 2023
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6. Pink-beam serial femtosecond crystallography for accurate structure-factor determination at an X-ray free-electron laser.
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Nass K, Bacellar C, Cirelli C, Dworkowski F, Gevorkov Y, James D, Johnson PJM, Kekilli D, Knopp G, Martiel I, Ozerov D, Tolstikova A, Vera L, Weinert T, Yefanov O, Standfuss J, Reiche S, and Milne CJ
- Abstract
Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) enables essentially radiation-damage-free macromolecular structure determination using microcrystals that are too small for synchrotron studies. However, SFX experiments often require large amounts of sample in order to collect highly redundant data where some of the many stochastic errors can be averaged out to determine accurate structure-factor amplitudes. In this work, the capability of the Swiss X-ray free-electron laser (SwissFEL) was used to generate large-bandwidth X-ray pulses [Δλ/λ = 2.2% full width at half-maximum (FWHM)], which were applied in SFX with the aim of improving the partiality of Bragg spots and thus decreasing sample consumption while maintaining the data quality. Sensitive data-quality indicators such as anomalous signal from native thaumatin micro-crystals and de novo phasing results were used to quantify the benefits of using pink X-ray pulses to obtain accurate structure-factor amplitudes. Compared with data measured using the same setup but using X-ray pulses with typical quasi-monochromatic XFEL bandwidth (Δλ/λ = 0.17% FWHM), up to fourfold reduction in the number of indexed diffraction patterns required to obtain similar data quality was achieved. This novel approach, pink-beam SFX, facilitates the yet underutilized de novo structure determination of challenging proteins at XFELs, thereby opening the door to more scientific breakthroughs., (© Karol Nass et al. 2021.)
- Published
- 2021
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7. Advances in long-wavelength native phasing at X-ray free-electron lasers.
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Nass K, Cheng R, Vera L, Mozzanica A, Redford S, Ozerov D, Basu S, James D, Knopp G, Cirelli C, Martiel I, Casadei C, Weinert T, Nogly P, Skopintsev P, Usov I, Leonarski F, Geng T, Rappas M, Doré AS, Cooke R, Nasrollahi Shirazi S, Dworkowski F, Sharpe M, Olieric N, Bacellar C, Bohinc R, Steinmetz MO, Schertler G, Abela R, Patthey L, Schmitt B, Hennig M, Standfuss J, Wang M, and Milne CJ
- Abstract
Long-wavelength pulses from the Swiss X-ray free-electron laser (XFEL) have been used for de novo protein structure determination by native single-wavelength anomalous diffraction (native-SAD) phasing of serial femtosecond crystallography (SFX) data. In this work, sensitive anomalous data-quality indicators and model proteins were used to quantify improvements in native-SAD at XFELs such as utilization of longer wavelengths, careful experimental geometry optimization, and better post-refinement and partiality correction. Compared with studies using shorter wavelengths at other XFELs and older software versions, up to one order of magnitude reduction in the required number of indexed images for native-SAD was achieved, hence lowering sample consumption and beam-time requirements significantly. Improved data quality and higher anomalous signal facilitate so-far underutilized de novo structure determination of challenging proteins at XFELs. Improvements presented in this work can be used in other types of SFX experiments that require accurate measurements of weak signals, for example time-resolved studies., (© Karol Nass et al. 2020.)
- Published
- 2020
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8. Spin cascade and doming in ferric hemes: Femtosecond X-ray absorption and X-ray emission studies.
- Author
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Bacellar C, Kinschel D, Mancini GF, Ingle RA, Rouxel J, Cannelli O, Cirelli C, Knopp G, Szlachetko J, Lima FA, Menzi S, Pamfilidis G, Kubicek K, Khakhulin D, Gawelda W, Rodriguez-Fernandez A, Biednov M, Bressler C, Arrell CA, Johnson PJM, Milne CJ, and Chergui M
- Subjects
- Cytochromes c metabolism, Humans, Iron chemistry, Iron metabolism, Kinetics, Protein Domains, Spectrometry, X-Ray Emission, X-Ray Absorption Spectroscopy, Cytochromes c chemistry
- Abstract
The structure-function relationship is at the heart of biology, and major protein deformations are correlated to specific functions. For ferrous heme proteins, doming is associated with the respiratory function in hemoglobin and myoglobins. Cytochrome c (Cyt c) has evolved to become an important electron-transfer protein in humans. In its ferrous form, it undergoes ligand release and doming upon photoexcitation, but its ferric form does not release the distal ligand, while the return to the ground state has been attributed to thermal relaxation. Here, by combining femtosecond Fe K
α and Kβ X-ray emission spectroscopy (XES) with Fe K-edge X-ray absorption near-edge structure (XANES), we demonstrate that the photocycle of ferric Cyt c is entirely due to a cascade among excited spin states of the iron ion, causing the ferric heme to undergo doming, which we identify. We also argue that this pattern is common to a wide diversity of ferric heme proteins, raising the question of the biological relevance of doming in such proteins., Competing Interests: The authors declare no competing interest., (Copyright © 2020 the Author(s). Published by PNAS.)- Published
- 2020
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9. Femtosecond X-ray emission study of the spin cross-over dynamics in haem proteins.
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Kinschel D, Bacellar C, Cannelli O, Sorokin B, Katayama T, Mancini GF, Rouxel JR, Obara Y, Nishitani J, Ito H, Ito T, Kurahashi N, Higashimura C, Kudo S, Keane T, Lima FA, Gawelda W, Zalden P, Schulz S, Budarz JM, Khakhulin D, Galler A, Bressler C, Milne CJ, Penfold T, Yabashi M, Suzuki T, Misawa K, and Chergui M
- Subjects
- Heme metabolism, Hemoglobins metabolism, Kinetics, Ligands, Models, Molecular, Myoglobin metabolism, Spectrometry, X-Ray Emission, Heme chemistry, Hemoglobins chemistry, Myoglobin chemistry
- Abstract
In haemoglobin the change from the low-spin (LS) hexacoordinated haem to the high spin (HS, S = 2) pentacoordinated domed deoxy-myoglobin (deoxyMb) form upon ligand detachment from the haem and the reverse process upon ligand binding are what ultimately drives the respiratory function. Here we probe them in the case of Myoglobin-NO (MbNO) using element- and spin-sensitive femtosecond Fe K
α and Kβ X-ray emission spectroscopy at an X-ray free-electron laser (FEL). We find that the change from the LS (S = 1/2) MbNO to the HS haem occurs in ~800 fs, and that it proceeds via an intermediate (S = 1) spin state. We also show that upon NO recombination, the return to the planar MbNO ground state is an electronic relaxation from HS to LS taking place in ~30 ps. Thus, the entire ligand dissociation-recombination cycle in MbNO is a spin cross-over followed by a reverse spin cross-over process.- Published
- 2020
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10. Taking a snapshot of the triplet excited state of an OLED organometallic luminophore using X-rays.
- Author
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Smolentsev G, Milne CJ, Guda A, Haldrup K, Szlachetko J, Azzaroli N, Cirelli C, Knopp G, Bohinc R, Menzi S, Pamfilidis G, Gashi D, Beck M, Mozzanica A, James D, Bacellar C, Mancini GF, Tereshchenko A, Shapovalov V, Kwiatek WM, Czapla-Masztafiak J, Cannizzo A, Gazzetto M, Sander M, Levantino M, Kabanova V, Rychagova E, Ketkov S, Olaru M, Beckmann J, and Vogt M
- Abstract
OLED technology beyond small or expensive devices requires light-emitters, luminophores, based on earth-abundant elements. Understanding and experimental verification of charge transfer in luminophores are needed for this development. An organometallic multicore Cu complex comprising Cu-C and Cu-P bonds represents an underexplored type of luminophore. To investigate the charge transfer and structural rearrangements in this material, we apply complementary pump-probe X-ray techniques: absorption, emission, and scattering including pump-probe measurements at the X-ray free-electron laser SwissFEL. We find that the excitation leads to charge movement from C- and P- coordinated Cu sites and from the phosphorus atoms to phenyl rings; the Cu core slightly rearranges with 0.05 Å increase of the shortest Cu-Cu distance. The use of a Cu cluster bonded to the ligands through C and P atoms is an efficient way to keep structural rigidity of luminophores. Obtained data can be used to verify computational methods for the development of luminophores.
- Published
- 2020
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11. Tracking multiple components of a nuclear wavepacket in photoexcited Cu(I)-phenanthroline complex using ultrafast X-ray spectroscopy.
- Author
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Katayama T, Northey T, Gawelda W, Milne CJ, Vankó G, Lima FA, Bohinc R, Németh Z, Nozawa S, Sato T, Khakhulin D, Szlachetko J, Togashi T, Owada S, Adachi SI, Bressler C, Yabashi M, and Penfold TJ
- Abstract
Disentangling the strong interplay between electronic and nuclear degrees of freedom is essential to achieve a full understanding of excited state processes during ultrafast nonadiabatic chemical reactions. However, the complexity of multi-dimensional potential energy surfaces means that this remains challenging. The energy flow during vibrational and electronic relaxation processes can be explored with structural sensitivity by probing a nuclear wavepacket using femtosecond time-resolved X-ray Absorption Near Edge Structure (TR-XANES). However, it remains unknown to what level of detail vibrational motions are observable in this X-ray technique. Herein we track the wavepacket dynamics of a prototypical [Cu(2,9-dimethyl-1,10-phenanthroline)
2 ]+ complex using TR-XANES. We demonstrate that sensitivity to individual wavepacket components can be modulated by the probe energy and that the bond length change associated with molecular breathing mode can be tracked with a sub-Angstrom resolution beyond optical-domain observables. Importantly, our results reveal how state-of-the-art TR-XANES provides deeper insights of ultrafast nonadiabatic chemical reactions.- Published
- 2019
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12. SwissFEL Aramis beamline photon diagnostics. Erratum.
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Juranić P, Rehanek J, Arrell CA, Pradervand C, Cassar A, Calvi M, Ischebeck R, Erny C, Heimgartner P, Gorgisyan I, Thominet V, Tiedtke K, Sorokin A, Follath R, Makita M, Seniutinas G, David C, Milne CJ, Lemke H, Radovic M, Hauri CP, and Patthey L
- Abstract
The list of authors in the paper by Juranić et al. (2018) [J. Synchrotron Rad. 25, 1238-1248] is corrected., (open access.)
- Published
- 2019
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13. Femtosecond phase-transition in hard x-ray excited bismuth.
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Makita M, Vartiainen I, Mohacsi I, Caleman C, Diaz A, Jönsson HO, Juranić P, Medvedev N, Meents A, Mozzanica A, Opara NL, Padeste C, Panneels V, Saxena V, Sikorski M, Song S, Vera L, Willmott PR, Beaud P, Milne CJ, Ziaja-Motyka B, and David C
- Abstract
The evolution of bismuth crystal structure upon excitation of its A
1g phonon has been intensely studied with short pulse optical lasers. Here we present the first-time observation of a hard x-ray induced ultrafast phase transition in a bismuth single crystal at high intensities (~1014 W/cm2 ). The lattice evolution was followed using a recently demonstrated x-ray single-shot probing setup. The time evolution of the (111) Bragg peak intensity showed strong dependence on the excitation fluence. After exposure to a sufficiently intense x-ray pulse, the peak intensity dropped to zero within 300 fs, i.e. faster than one oscillation period of the A1g mode at room temperature. Our analysis indicates a nonthermal origin of a lattice disordering process, and excludes interpretations based on electron-ion equilibration process, or on thermodynamic heating process leading to plasma formation.- Published
- 2019
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14. Demonstration of femtosecond X-ray pump X-ray probe diffraction on protein crystals.
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Opara NL, Mohacsi I, Makita M, Castano-Diez D, Diaz A, Juranić P, Marsh M, Meents A, Milne CJ, Mozzanica A, Padeste C, Panneels V, Sikorski M, Song S, Stahlberg H, Vartiainen I, Vera L, Wang M, Willmott PR, and David C
- Abstract
The development of X-ray free-electron lasers (XFELs) has opened the possibility to investigate the ultrafast dynamics of biomacromolecules using X-ray diffraction. Whereas an increasing number of structures solved by means of serial femtosecond crystallography at XFELs is available, the effect of radiation damage on protein crystals during ultrafast exposures has remained an open question. We used a split-and-delay line based on diffractive X-ray optics at the Linac Coherent Light Source XFEL to investigate the time dependence of X-ray radiation damage to lysozyme crystals. For these tests, crystals were delivered to the X-ray beam using a fixed-target approach. The presented experiments provide probe signals at eight different delay times between 19 and 213 femtoseconds after a single pump event, thereby covering the time-scales relevant for femtosecond serial crystallography. Even though significant impact on the crystals was observed at long time scales after exposure with a single X-ray pulse, the collected diffraction data did not show significant signal reduction that could be assigned to beam damage on the crystals in the sampled time window and resolution range. This observation is in agreement with estimations of the applied radiation dose, which in our experiment was clearly below the values expected to cause damage on the femtosecond time scale. The experiments presented here demonstrate the feasibility of time-resolved pump-multiprobe X-ray diffraction experiments on protein crystals.
- Published
- 2018
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15. SwissFEL Aramis beamline photon diagnostics.
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Juranić P, Rehanek J, Arrell CA, Pradervand C, Ischebeck R, Erny C, Heimgartner P, Gorgisyan I, Thominet V, Tiedtke K, Sorokin A, Follath R, Makita M, Seniutinas G, David C, Milne CJ, Lemke H, Radovic M, Hauri CP, and Patthey L
- Abstract
The SwissFEL Aramis beamline, covering the photon energies between 1.77 keV and 12.7 keV, features a suite of online photon diagnostics tools to help both users and FEL operators in analysing data and optimizing experimental and beamline performance. Scientists will be able to obtain information about the flux, spectrum, position, pulse length, and arrival time jitter versus the experimental laser for every photon pulse, with further information about beam shape and size available through the use of destructive screens. This manuscript is an overview of the diagnostics tools available at SwissFEL and presents their design, working principles and capabilities. It also features new developments like the first implementation of a THz-streaking based temporal diagnostics for a hard X-ray FEL, capable of measuring pulse lengths to 5 fs r.m.s. or better., (open access.)
- Published
- 2018
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16. Revealing hole trapping in zinc oxide nanoparticles by time-resolved X-ray spectroscopy.
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Penfold TJ, Szlachetko J, Santomauro FG, Britz A, Gawelda W, Doumy G, March AM, Southworth SH, Rittmann J, Abela R, Chergui M, and Milne CJ
- Abstract
Nanostructures of transition metal oxides, such as zinc oxide, have attracted considerable interest for solar-energy conversion and photocatalysis. Both applications are sensitive to the transport and trapping of photoexcited charge carriers. The probing of electron trapping has recently become possible using time-resolved element-sensitive methods, such as X-ray spectroscopy. However, valence-band-trapped holes have so far escaped observation. Herein we use X-ray absorption spectroscopy combined with a dispersive X-ray emission spectrometer to probe the charge carrier relaxation and trapping processes in zinc oxide nanoparticles after above band-gap photoexcitation. Our results, supported by simulations, demonstrate that within 80 ps, photoexcited holes are trapped at singly charged oxygen vacancies, which causes an outward displacement by ~15% of the four surrounding zinc atoms away from the doubly charged vacancy. This identification of the hole traps provides insight for future developments of transition metal oxide-based nanodevices.
- Published
- 2018
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17. Perspective: Opportunities for ultrafast science at SwissFEL.
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Abela R, Beaud P, van Bokhoven JA, Chergui M, Feurer T, Haase J, Ingold G, Johnson SL, Knopp G, Lemke H, Milne CJ, Pedrini B, Radi P, Schertler G, Standfuss J, Staub U, and Patthey L
- Abstract
We present the main specifications of the newly constructed Swiss Free Electron Laser, SwissFEL, and explore its potential impact on ultrafast science. In light of recent achievements at current X-ray free electron lasers, we discuss the potential territory for new scientific breakthroughs offered by SwissFEL in Chemistry, Biology, and Materials Science, as well as nonlinear X-ray science.
- Published
- 2018
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18. A compact and versatile tender X-ray single-shot spectrometer for online XFEL diagnostics.
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Rehanek J, Milne CJ, Szlachetko J, Czapla-Masztafiak J, Schneider J, Huthwelker T, Borca CN, Wetter R, Patthey L, and Juranić P
- Abstract
One of the remaining challenges for accurate photon diagnostics at X-ray free-electron lasers (FELs) is the shot-to-shot, non-destructive, high-resolution characterization of the FEL pulse spectrum at photon energies between 2 keV and 4 keV, the so-called tender X-ray range. Here, a spectrometer setup is reported, based on the von Hamos geometry and using elastic scattering as a fingerprint of the FEL-generated spectrum. It is capable of pulse-to-pulse measurement of the spectrum with an energy resolution (ΔE/E) of 10
-4 , within a bandwidth of 2%. The Tender X-ray Single-Shot Spectrometer (TXS) will grant to experimental scientists the freedom to measure the spectrum in a single-shot measurement, keeping the transmitted beam undisturbed. It will enable single-shot reconstructions for easier and faster data analysis.- Published
- 2018
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19. Establishing nonlinearity thresholds with ultraintense X-ray pulses.
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Szlachetko J, Hoszowska J, Dousse JC, Nachtegaal M, Błachucki W, Kayser Y, Sà J, Messerschmidt M, Boutet S, Williams GJ, David C, Smolentsev G, van Bokhoven JA, Patterson BD, Penfold TJ, Knopp G, Pajek M, Abela R, and Milne CJ
- Abstract
X-ray techniques have evolved over decades to become highly refined tools for a broad range of investigations. Importantly, these approaches rely on X-ray measurements that depend linearly on the number of incident X-ray photons. The advent of X-ray free electron lasers (XFELs) is opening the ability to reach extremely high photon numbers within ultrashort X-ray pulse durations and is leading to a paradigm shift in our ability to explore nonlinear X-ray signals. However, the enormous increase in X-ray peak power is a double-edged sword with new and exciting methods being developed but at the same time well-established techniques proving unreliable. Consequently, accurate knowledge about the threshold for nonlinear X-ray signals is essential. Herein we report an X-ray spectroscopic study that reveals important details on the thresholds for nonlinear X-ray interactions. By varying both the incident X-ray intensity and photon energy, we establish the regimes at which the simplest nonlinear process, two-photon X-ray absorption (TPA), can be observed. From these measurements we can extract the probability of this process as a function of photon energy and confirm both the nature and sub-femtosecond lifetime of the virtual intermediate electronic state.
- Published
- 2016
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20. Assessing urinary flow rate, creatinine, osmolality and other hydration adjustment methods for urinary biomonitoring using NHANES arsenic, iodine, lead and cadmium data.
- Author
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Middleton DR, Watts MJ, Lark RM, Milne CJ, and Polya DA
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Arsenic urine, Cadmium blood, Cadmium urine, Child, Creatinine urine, Environmental Pollutants urine, Female, Humans, Iodine urine, Lead blood, Lead urine, Male, Middle Aged, Nutrition Surveys, Osmolar Concentration, Young Adult, Environmental Monitoring methods, Urinalysis methods
- Abstract
Background: There are numerous methods for adjusting measured concentrations of urinary biomarkers for hydration variation. Few studies use objective criteria to quantify the relative performance of these methods. Our aim was to compare the performance of existing methods for adjusting urinary biomarkers for hydration variation., Methods: Creatinine, osmolality, excretion rate (ER), bodyweight adjusted ER (ERBW) and empirical analyte-specific urinary flow rate (UFR) adjustment methods on spot urinary concentrations of lead (Pb), cadmium (Cd), non-arsenobetaine arsenic (As(IMM)) and iodine (I) from the US National Health and Nutrition Examination Survey (NHANES) (2009-2010 and 2011-2012) were evaluated. The data were divided into a training dataset (n = 1,723) from which empirical adjustment coefficients were derived and a testing dataset (n = 428) on which quantification of the performance of the adjustment methods was done by calculating, primarily, the correlation of the adjusted parameter with UFR, with lower correlations indicating better performance and, secondarily, the correlation of the adjusted parameters with blood analyte concentrations (Pb and Cd), with higher correlations indicating better performance., Results: Overall performance across analytes was better for Osmolality and UFR based methods. Excretion rate and ERBW consistently performed worse, often no better than unadjusted concentrations., Conclusions: Osmolality adjustment of urinary biomonitoring data provides for more robust adjustment than either creatinine based or ER or ERBW methods, the latter two of which tend to overcompensate for UFR. Modified UFR methods perform significantly better than all but osmolality in removing hydration variation, but depend on the accuracy of UFR calculations. Hydration adjustment performance is analyte-specific and further research is needed to establish a robust and consistent framework.
- Published
- 2016
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21. Investigating DNA Radiation Damage Using X-Ray Absorption Spectroscopy.
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Czapla-Masztafiak J, Szlachetko J, Milne CJ, Lipiec E, Sá J, Penfold TJ, Huthwelker T, Borca C, Abela R, and Kwiatek WM
- Subjects
- Animals, Cattle, Protons, Ultraviolet Rays, DNA radiation effects, DNA Damage, X-Ray Absorption Spectroscopy methods
- Abstract
The biological influence of radiation on living matter has been studied for years; however, several questions about the detailed mechanism of radiation damage formation remain largely unanswered. Among all biomolecules exposed to radiation, DNA plays an important role because any damage to its molecular structure can affect the whole cell and may lead to chromosomal rearrangements resulting in genomic instability or cell death. To identify and characterize damage induced in the DNA sugar-phosphate backbone, in this work we performed x-ray absorption spectroscopy at the P K-edge on DNA irradiated with either UVA light or protons. By combining the experimental results with theoretical calculations, we were able to establish the types and relative ratio of lesions produced by both UVA and protons around the phosphorus atoms in DNA., (Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
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22. NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.
- Author
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Silatani M, Lima FA, Penfold TJ, Rittmann J, Reinhard ME, Rittmann-Frank HM, Borca C, Grolimund D, Milne CJ, and Chergui M
- Subjects
- Kinetics, Ligands, Myoglobin metabolism, Nitric Oxide metabolism, Spectrum Analysis methods
- Abstract
Diatomic ligands in hemoproteins and the way they bind to the active center are central to the protein's function. Using picosecond Fe K-edge X-ray absorption spectroscopy, we probe the NO-heme recombination kinetics with direct sensitivity to the Fe-NO binding after 532-nm photoexcitation of nitrosylmyoglobin (MbNO) in physiological solutions. The transients at 70 and 300 ps are identical, but they deviate from the difference between the static spectra of deoxymyoglobin and MbNO, showing the formation of an intermediate species. We propose the latter to be a six-coordinated domed species that is populated on a timescale of ∼ 200 ps by recombination with NO ligands. This work shows the feasibility of ultrafast pump-probe X-ray spectroscopic studies of proteins in physiological media, delivering insight into the electronic and geometric structure of the active center.
- Published
- 2015
- Full Text
- View/download PDF
23. Following the dynamics of matter with femtosecond precision using the X-ray streaking method.
- Author
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David C, Karvinen P, Sikorski M, Song S, Vartiainen I, Milne CJ, Mozzanica A, Kayser Y, Diaz A, Mohacsi I, Carini GA, Herrmann S, Färm E, Ritala M, Fritz DM, and Robert A
- Abstract
X-ray Free Electron Lasers (FELs) can produce extremely intense and very short pulses, down to below 10 femtoseconds (fs). Among the key applications are ultrafast time-resolved studies of dynamics of matter by observing responses to fast excitation pulses in a pump-probe manner. Detectors with sufficient time resolution for observing these processes are not available. Therefore, such experiments typically measure a sample's full dynamics by repeating multiple pump-probe cycles at different delay times. This conventional method assumes that the sample returns to an identical or very similar state after each cycle. Here we describe a novel approach that can provide a time trace of responses following a single excitation pulse, jitter-free, with fs timing precision. We demonstrate, in an X-ray diffraction experiment, how it can be applied to the investigation of ultrafast irreversible processes.
- Published
- 2015
- Full Text
- View/download PDF
24. X-ray spectroscopic study of solvent effects on the ferrous and ferric hexacyanide anions.
- Author
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Penfold TJ, Reinhard M, Rittmann-Frank MH, Tavernelli I, Rothlisberger U, Milne CJ, Glatzel P, and Chergui M
- Abstract
We present an Fe Kα resonant inelastic X-ray scattering (RIXS) and X-ray emission (XES) study of ferrous and ferric hexacyanide dissolved in water and ethylene glycol. We observe that transitions below the absorption edge show that the solvent has a distinct effect on the valence electronic structure. In addition, both the RIXS and XES spectra show a stabilization of the 2p levels when dissolved in water. Using molecular dynamics simulations, we propose that this effect arises from the hydrogen-bonding interactions between the complex and nearby solvent molecules. This withdraws electron density from the ligands, stabilizing the complex but also causing a slight increase in π-backbonding.
- Published
- 2014
- Full Text
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25. Photooxidation and photoaquation of iron hexacyanide in aqueous solution: A picosecond X-ray absorption study.
- Author
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Reinhard M, Penfold TJ, Lima FA, Rittmann J, Rittmann-Frank MH, Abela R, Tavernelli I, Rothlisberger U, Milne CJ, and Chergui M
- Abstract
We present a picosecond Fe K-edge absorption study of photoexcited ferrous and ferric hexacyanide in water under 355 and 266 nm excitation. Following 355 nm excitation, the transient spectra for the ferrous and ferric complexes exhibit a red shift of the edge reflecting an increased electron density at the Fe atom. For the former, an enhanced pre-edge transition is also observed. These observations are attributed to the aquated [Fe(CN)5OH2](3-) species, based on quantum chemical calculations which also provide structural parameters. Upon 266 nm excitation of the ferric complex, a transient reminiscent of the aquated species is observed (appearance of a pre-edge feature and red shift of the edge) but it is different from that obtained under 355 nm excitation. This points to a new reaction channel occurring through an intermediate state lying between these two excitation energies. Finally, 266 nm excitation of the ferrous species is dominated by the photooxidation channel with formation of the ferric complex as main photoproduct. However, we observe an additional minor photoproduct, which is identical to the 266 nm generated photoproduct of the ferric species, suggesting that under our experimental conditions, the pump pulse photooxidises the ferrous complex and re-excites the primary ferric photoproduct.
- Published
- 2014
- Full Text
- View/download PDF
26. Communication: The electronic structure of matter probed with a single femtosecond hard x-ray pulse.
- Author
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Szlachetko J, Milne CJ, Hoszowska J, Dousse JC, Błachucki W, Sà J, Kayser Y, Messerschmidt M, Abela R, Boutet S, David C, Williams G, Pajek M, Patterson BD, Smolentsev G, van Bokhoven JA, and Nachtegaal M
- Abstract
Physical, biological, and chemical transformations are initiated by changes in the electronic configuration of the species involved. These electronic changes occur on the timescales of attoseconds (10(-18) s) to femtoseconds (10(-15) s) and drive all subsequent electronic reorganization as the system moves to a new equilibrium or quasi-equilibrium state. The ability to detect the dynamics of these electronic changes is crucial for understanding the potential energy surfaces upon which chemical and biological reactions take place. Here, we report on the determination of the electronic structure of matter using a single self-seeded femtosecond x-ray pulse from the Linac Coherent Light Source hard x-ray free electron laser. By measuring the high energy resolution off-resonant spectrum (HEROS), we were able to obtain information about the electronic density of states with a single femtosecond x-ray pulse. We show that the unoccupied electronic states of the scattering atom may be determined on a shot-to-shot basis and that the measured spectral shape is independent of the large intensity fluctuations of the incoming x-ray beam. Moreover, we demonstrate the chemical sensitivity and single-shot capability and limitations of HEROS, which enables the technique to track the electronic structural dynamics in matter on femtosecond time scales, making it an ideal probe technique for time-resolved X-ray experiments.
- Published
- 2014
- Full Text
- View/download PDF
27. Solvent-induced luminescence quenching: static and time-resolved X-ray absorption spectroscopy of a copper(I) phenanthroline complex.
- Author
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Penfold TJ, Karlsson S, Capano G, Lima FA, Rittmann J, Reinhard M, Rittmann-Frank MH, Braem O, Baranoff E, Abela R, Tavernelli I, Rothlisberger U, Milne CJ, and Chergui M
- Abstract
We present a static and picosecond X-ray absorption study at the Cu K-edge of bis(2,9-dimethyl-1,10-phenanthroline)copper(I) ([Cu(dmp)2](+); dmp = 2,9-dimethyl-1,10-phenanthroline) dissolved in acetonitrile and dichloromethane. The steady-state photoluminescence spectra in dichloromethane and acetonitrile are also presented and show a shift to longer wavelengths for the latter, which points to a stronger stabilization of the excited complex. The fine structure features of the static and transient X-ray spectra allow an unambiguous assignment of the electronic and geometric structure of the molecule in both its ground and excited (3)MLCT states. Importantly, the transient spectra are remarkably similar for both solvents, and the spectral changes can be rationalized using the optimized ground- and excited-state structures of the complex. The proposed assignment of the lifetime shortening of the excited state in donor solvents (acetonitrile) to a metal-centered exciplex is not corroborated here. Molecular dynamics simulations confirm the lack of complexation; however, in both solvents the molecules come close to the metal but undergo rapid exchange with the bulk. The shortening of the lifetime of the title complex and nine additional related complexes can be rationalized by the decrease in the (3)MLCT energy. Deviations from this trend may be explained by means of the effects of the dihedral angle between the ligand planes, the solvent, and the (3)MLCT-(1)MLCT energy gap.
- Published
- 2013
- Full Text
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28. X-ray absorption spectroscopy of ground and excited rhenium-carbonyl-diimine complexes: evidence for a two-center electron transfer.
- Author
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El Nahhas A, van der Veen RM, Penfold TJ, Pham VT, Lima FA, Abela R, Blanco-Rodriguez AM, Záliš S, Vlček A, Tavernelli I, Rothlisberger U, Milne CJ, and Chergui M
- Abstract
Steady-state and picosecond time-resolved X-ray absorption spectroscopy is used to study the ground and lowest triplet states of [ReX(CO)(3)(bpy)](n+), X = Etpy (n = 1), Cl, or Br (n = 0). We demonstrate that the transient spectra at both the Re L(3)- and Br K-edges show the emergence of a pre-edge feature, absent in the ground-state spectrum, which is associated with the electron hole created in the highest occupied molecular orbital following photoexcitation. Importantly, these features have the same dynamics, confirming previous predictions that the low-lying excited states of these complexes involve a two-center charge transfer from both the Re and the ligand, X. We also demonstrate that the DFT optimized ground and excited structures allow us to reproduce the experimental XANES and EXAFS spectra. The ground-state structural refinement shows that the Br atom contributes very little to the latter, whereas the Re-C-O scattering paths are dominant due to the so-called focusing effect. For the excited-state spectrum, the Re-X bond undergoes one of the largest changes but still remains a weak contribution to the photoinduced changes of the EXAFS spectrum.
- Published
- 2013
- Full Text
- View/download PDF
29. A wavelet analysis for the X-ray absorption spectra of molecules.
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Penfold TJ, Tavernelli I, Milne CJ, Reinhard M, El Nahhas A, Abela R, Rothlisberger U, and Chergui M
- Abstract
We present a Wavelet transform analysis for the X-ray absorption spectra of molecules. In contrast to the traditionally used Fourier transform approach, this analysis yields a 2D correlation plot in both R- and k-space. As a consequence, it is possible to distinguish between different scattering pathways at the same distance from the absorbing atom and between the contributions of single and multiple scattering events, making an unambiguous assignment of the fine structure oscillations for complex systems possible. We apply this to two previously studied transition metal complexes, namely iron hexacyanide in both its ferric and ferrous form, and a rhenium diimine complex, [ReX(CO)(3)(bpy)], where X = Br, Cl, or ethyl pyridine (Etpy). Our results demonstrate the potential advantages of using this approach and they highlight the importance of multiple scattering, and specifically the focusing phenomenon to the extended X-ray absorption fine structure (EXAFS) spectra of these complexes. We also shed light on the low sensitivity of the EXAFS spectrum to the Re-X scattering pathway.
- Published
- 2013
- Full Text
- View/download PDF
30. Non-equilibrium phonon dynamics studied by grazing-incidence femtosecond X-ray crystallography.
- Author
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Johnson SL, Beaud P, Vorobeva E, Milne CJ, Murray ED, Fahy S, and Ingold G
- Abstract
The timescales for structural changes in a single crystal of bismuth after excitation with an intense near-infrared laser pulse are studied with femtosecond pump-probe X-ray diffraction. Changes in the intensity and reciprocal-lattice vector of several reflections give quantitative information on the structure factor and lattice strain as a function of time, with a resolution of 200 fs. The results indicate that the majority of excess carrier energy that remains near the surface is transferred to vibrational modes on a timescale of about 10 ps, and that the resultant increase in the variance of the atomic positions at these times is consistent with the overall magnitude of lattice strain that develops.
- Published
- 2010
- Full Text
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31. Beating jet lag.
- Author
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Milne CJ and Fuard MH
- Subjects
- GABA Modulators therapeutic use, Humans, Male, Melatonin therapeutic use, Task Performance and Analysis, Treatment Outcome, Triazolam therapeutic use, Football physiology, Jet Lag Syndrome prevention & control
- Abstract
Jet lag is often cited as a cause of poor sporting performance. We report on the case of a rugby league player who flew 20,000 km and 12 time zones, then repeated the feat a few days later, prior to playing with distinction in an important final match in an international series.
- Published
- 2007
- Full Text
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32. Fifth-order Raman spectroscopy of liquid benzene: experiment and theory.
- Author
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Milne CJ, Li YL, Jansen TL, Huang L, and Miller RJ
- Abstract
The heterodyned fifth-order Raman response of liquid benzene has been measured and characterized by exploiting the passive-phase stabilization of diffractive optics. This result builds on our previous work with liquid carbon disulfide and extends the spectroscopy to a new liquid for the first time. The all-parallel and Dutch Cross polarization tensor elements are presented for both the experimental results and a finite-field molecular dynamics simulation. The overall response characteristics are similar to those of liquid carbon disulfide: a complete lack of signal along the pump delay, an elongated signal along the probe delay, and a short-lived signal along the time diagonal. Of particular interest is the change in phase between the nuclear and electronic response along the probe delay and diagonal which is not seen in CS2. Good agreement is achieved between the experiment and the finite-field molecular dynamics simulation. The measurement of the low-frequency Raman two-time delay correlation function indicates the intermolecular modes of liquid benzene to be primarily homogeneously broadened and that the liquid loses its nuclear rephasing ability within 300 fs. This rapid loss of nuclear correlations indicates a lack of modal character in the low-frequency motions of liquid benzene. This result is a validation of the general nature of the technique and represents an important step forward with respect to the use of nonlinear spectroscopy to directly access information on the anharmonic motions of liquids.
- Published
- 2006
- Full Text
- View/download PDF
33. Sports medicine in New Zealand.
- Author
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Milne CJ
- Subjects
- Athletic Injuries prevention & control, Athletic Injuries therapy, Child, Female, Humans, Insurance, Accident, Male, New Zealand, Professional Practice, Societies, Medical, Sports Medicine
- Abstract
Sports medicine in New Zealand is characterized by a team approach. Experienced professionals work together to the benefit of athletes, be they elite performers or those in sport for purely recreational purposes. A no-fault accident compensation scheme is used to provide speedy access to treatment services for those injured in sport and also for advice on accident prevention. Recent initiatives include a task force on drugs in sport and the creation of regional sports foundations. Sports medical education is a prominent part of the New Zealand scene.
- Published
- 1992
- Full Text
- View/download PDF
34. The Frequency of Poisoning in Calcutta, with Some Illustrative Cases.
- Author
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Robertson-Milne CJ
- Published
- 1902
35. Clinical Report on the Berhampore Asylum for the Year 1909.
- Author
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Robertson-Milne CJ
- Published
- 1910
36. The employment of setons in the district of Backergunge.
- Author
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ROBERTSON-MILNE CJ
- Subjects
- History of Medicine, Humans, Employment, Folklore, Rheumatic Diseases therapy
- Published
- 1952
37. Notes on Insanity, with Illustrative Cases.
- Author
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Robertson-Milne CJ
- Published
- 1906
38. The Employment of Setons in the District of Backergunge.
- Author
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Robertson-Milne CJ
- Published
- 1902
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