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Goal and theoretical commentary: A number of recent life cycle assessment (LCA) studies have concluded that animal-sourced foods should be restricted—or even avoided—within the human diet due to their relatively high environmental impacts (particularly those from ruminants) compared with other protein-rich foods (mainly protein-rich plant foods). From a nutritional point of view, however, issues such as broad nutrient bioavailability, amino acid balances, digestibility and even non-protein nutrient density (e.g., micronutrients) need to be accounted for before making such recommendations to the global population. This is especially important given the contribution of animal sourced foods to nutrient adequacy in the global South and vulnerable populations of high-income countries (e.g., children, women of reproductive age and elderly). Often, however, LCAs simplify this reality by using ‘protein’ as a functional unit in their models and basing their analyses on generic nutritional requirements. Even if a ‘nutritional functional unit’ (nFU) is utilised, it is unlikely to consider the complexities of amino acid composition and subsequent protein accretion. The discussion herein focuses on nutritional LCA (nLCA), particularly on the usefulness of nFUs such as ‘protein,’ and whether protein quality should be considered when adopting the nutrient as an (n)FU. Further, a novel and informative case study is provided to demonstrate the strengths and weaknesses of protein-quality adjustment. Case study methods: To complement current discussions, we present an exploratory virtual experiment to determine how Digestible Indispensable Amino Acid Scores (DIAAS) might play a role in nLCA development by correcting for amino acid quality and digestibility. DIAAS is a scoring mechanism which considers the limiting indispensable amino acids (IAAs) within an IAA balance of a given food (or meal) and provides a percentage contribution relative to recommended daily intakes for IAA and sub

This paper is the outcome of a community initiative to identify major unsolved scientific problems in hydrology motivated by a need for stronger harmonisation of research efforts. The procedure involved a public consultation through online media, followed by two workshops through which a large number of potential science questions were collated, prioritised, and synthesised. In spite of the diversity of the participants (230 scientists in total), the process revealed much about community priorities and the state of our science: a preference for continuity in research questions rather than radical departures or redirections from past and current work. Questions remain focused on the process-based understanding of hydrological variability and causality at all space and time scales. Increased attention to environmental change drives a new emphasis on understanding how change propagates across interfaces within the hydrological system and across disciplinary boundaries. In particular, the expansion of the human footprint raises a new set of questions related to human interactions with nature and water cycle feedbacks in the context of complex water management problems. We hope that this reflection and synthesis of the 23 unsolved problems in hydrology will help guide research efforts for some years to come. © 2019, © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

The need for improved abatement of agricultural diffuse water pollution represents cause for concern throughout the world. A critical aspect in the design of on-farm intervention programmes concerns the potential technical cost-effectiveness of packages of control measures. The European Union (EU) Water Framework Directive (WFD) calls for Programmes of Measures (PoMs) to protect freshwater environments and these comprise ‘basic’ (mandatory) and ‘supplementary’ (incentivised) options. Recent work has used measure review, elicitation of stakeholder attitudes and a process-based modelling framework to identify a new alternative set of ‘basic’ agricultural sector control measures for nutrient and sediment abatement across England. Following an initial scientific review of 708 measures, 90 were identified for further consideration at an industry workshop and 63 had industry support. Optimisation modelling was undertaken to identify a shortlist of measures using the Demonstration Test Catchments as sentinel agricultural landscapes. Optimisation selected 12 measures relevant to livestock or arable systems. Model simulations of 95% implementation of these 12 candidate ‘basic’ measures, in addition to business-as-usual, suggested reductions in the national agricultural nitrate load of 2.5%, whilst corresponding reductions in phosphorus and sediment were 11.9% and 5.6%, respectively. The total cost of applying the candidate ‘basic’ measures across the whole of England was estimated to be £450 million per annum, which is equivalent to £52 per hectare of agricultural land. This work contributed to a public consultation in 2016.

Increasing watershed sediment yields are an important problem in Africa but the sources of these sediment yields have only very rarely been investigated. This study therefor aims to discriminate subsurface and surface sources of fine grain sediments in a representative mesoscale (580 km2) West African savanna watershed. We used a sediment source fingerprinting approach for source apportionment including geochemical and radionuclide (137Cs, 210Pbex, 7Be) composite signatures where 7Be was used as a tracer for the first time in the African environment. Two field campaigns were conducted collecting a total of 258 geochemical and 66 isotope samples. We found that subsurface source categories, dominantly river bank, contributed an unexpected high share of 43% (geochemistry) and 45% (radionuclides) to the sampled fine‐grained sediments. Pairwise comparison of the averaged frequency distributions for predicted source proportions using five geochemical signatures with the frequency distribution generated using the single radionuclide signature suggested that the two distributions are not statistically different. Extrapolating our measured contribution of subsurface erosion to areas with similar yields in comparable environmental settings, we can assume that subsurface sources are an important component of sediment loss across large areas of West Africa. Subsurface erosion, primarily associated with bank rather than gully erosion, is likely to increase in the future with projected rises in runoff due to land use and climate change. Source tracing studies need to be undertaken more widely across Africa to help mitigation planning for sediment‐related and land degradation problems.

Globally, salmon populations are under pressure and in those where numbers are severely depleted, density independent factors such as the accumulation of fine sediment and subsequent mortality of incubating embryos are critical factors in their conservation. Although progress has been made in identifying the processes by which fine sediment can lead to embryo mortality, this has focussed on the physical blockage of gravel pores. This paper presents new knowledge on the role of sediment-associated organic matter in controlling the supply of dissolved oxygen to incubating salmon embryos within gravel river beds. We report a new approach to the measurement of sediment oxygen demand (SOD) from interstitial sediments accumulated within salmon redds and demonstrate this across a range of salmon river types. The effects of varying SOD on dissolved oxygen supply to incubating salmon embryos are quantified for the first time, using the physically based Sediment Intrusion and Dissolved Oxygen (SIDO-UK) model. The results reveal the importance of the mass of accumulating sediment and sediment consumption rates (sediment oxygen consumption [SOC]), which constitute the overall SOD over time for a particular sediment sample. Higher SOC result in reductions in dissolved oxygen that are deleterious to salmonids; however, these are subordinate to the effects of sediment mass. Larger quantities of sediment accumulating within the redd not only create a higher SOD but also physically block the pores within the gravels, leading to a more drastic decline in oxygen supply through the combined effects of reduced seepage velocity and dissolved oxygen concentration. We seek to generalize the results by exploring the influence of catchment characteristics on field measures of SOD and SOC. This work makes a significant and novel contribution to improving our fundamental understanding of hyporheic processes within salmonid spawning gravels whilst providing resource managers with evidence of th

Excessive inputs of fine-grained sediment can damage aquatic ecosystems both by degrading habitat condition and by directly impairing biota. Recent research has improved our understanding of how benthic macroinvertebrates respond to fine-grained sediment stress, leading to the development of a variety of bioassessment indices based on changes in taxonomic composition and biological trait composition. Use of biological traits as indicators of stress has been advocated on the basis of a better mechanistic understanding of the biotic and abiotic factors acting on benthic communities. We quantified changes in the macroinvertebrate biological trait assemblage from a large number of river reaches spanning a national-scale gradient of increasing agricultural fine sediment delivery and retention, having first factored out variation associated with the natural environmental gradient, with the aim of robustly testing predictions of trait response. We found strong support for 2 of 18 predictions of how macroinvertebrate traits would respond to fine sediment stress. Furthermore, using an independent dataset, we were able to confirm the response of 5 of 6 trait classes that partial RLQ-fourth corner analysis found to be significantly associated with the fine sediment gradient. Prevalence of eggs as a resistant form, in combination with either an adult aquatic life stage or crawling, provided the best indication of fine sediment conditions in streams, approaching the performance of taxonomic composition-based sediment indices, CoFSIsp and EPSImtl. This study has robustly confirmed the potential of macroinvertebrate biological traits as indicators of fine sediment impacts.

Phosphorus losses from land to water will be impacted by climate change and land management for food production, with detrimental impacts on aquatic ecosystems. Here we use a unique combination of methods to evaluate the impact of projected climate change on future phosphorus transfers, and to assess what scale of agricultural change would be needed to mitigate these transfers. We combine novel high-frequency phosphorus flux data from three representative catchments across the UK, a new high-spatial resolution climate model, uncertainty estimates from an ensemble of future climate simulations, two phosphorus transfer models of contrasting complexity and a simplified representation of the potential intensification of agriculture based on expert elicitation from land managers. We show that the effect of climate change on average winter phosphorus loads (predicted increase up to 30% by 2050s) will be limited only by large-scale agricultural changes (e.g., 20–80% reduction in phosphorus inputs).

Fine sediments are known to be an important cause of increased mortality in benthic spawning fish. To date, most of the research has focussed on the relationship between embryo mortality and the quantity of fine sediment accumulated in the egg pocket. However, recent evidence suggests a) that the source of fine sediment might also be important, and b) that fitness of surviving embryos post-hatch might also be impacted by the accumulation of fine sediments. In this paper, we report an experiment designed to simulate the incubation environment of brown trout (Salmo trutta) and Atlantic salmon (Salmo salar). During the experiment, the incubating embryos were exposed to different quantities of fine (< 63 μm) sediment derived from four different sources; agricultural topsoils, damaged road verges, eroding river channel banks and tertiary level treated sewage. Results showed that mass and source are independently important for determining the mortality and fitness of alevin. Differences between species were observed, such that brown trout are less sensitive to mass and source of accumulated sediment. We demonstrate for the first time that sediment source is an additional control on the impact of fine sediment, and that this is primarily controlled by the organic matter content and oxygen consumption of the catchment source material.

Nitrate is necessary for agricultural productivity, but can cause considerable problems if released into aquatic systems. Agricultural land is the major source of nitrates in UK groundwater. Due to the long time-lag in the groundwater system, it could take decades for leached nitrate from the soil to discharge into freshwaters. However, this nitrate time-lag has rarely been considered in environmental water management. Against this background, this paper presents an approach to modelling groundwater nitrate at the national scale, to simulate the impacts of historical nitrate loading from agricultural land on the evolution of groundwater nitrate concentrations. An additional process-based component was constructed for the saturated zone of significant aquifers in England and Wales. This uses a simple flow model which requires modelled recharge values, together with published aquifer properties and thickness data. A spatially distributed and temporally variable nitrate input function was also introduced. The sensitivity of parameters was analysed using Monte Carlo simulations. The model was calibrated using national nitrate monitoring data. Time series of annual average nitrate concentrations along with annual spatially distributed nitrate concentration maps from 1925 to 2150 were generated for 28 selected aquifer zones. The results show that 16 aquifer zones have an increasing trend in nitrate concentration, while average nitrate concentrations in the remaining 12 are declining. The results are also indicative of the trend in the flux of groundwater nitrate entering rivers through baseflow. The model thus enables the magnitude and timescale of groundwater nitrate response to be factored into source apportionment tools and to be taken into account alongside current planning of land-management options for reducing nitrate losses.

Excessive sediment pressure on aquatic habitats is of global concern. A unique dataset, comprising instantaneous measurements of deposited fine sediment in 230 agricultural streams across England and Wales, was analysed in relation to 20 potential explanatory catchment and channel variables. The most effective explanatory variable for the amount of deposited sediment was found to be stream power, calculated for bankfull flow and used to index the capacity of the stream to transport sediment. Both stream power and velocity category were highly significant (p<<0.001), explaining some 57% variation in total fine sediment mass. Modelled sediment pressure, predominantly from agriculture, was marginally significant (p<0.05) and explained a further 1% variation. The relationship was slightly stronger for erosional zones, providing 62% explanation overall. In the case of the deposited surface drape, stream power was again found to be the most effective explanatory variable (p<0.001) but velocity category, baseflow index and modelled sediment pressure were all significant (p<0.01); each provided an additional 2% explanation to an overall 50%. It is suggested that, in general, the study sites were transport-limited and the majority of stream beds were saturated by fine sediment. For sites below saturation, the upper envelope of measured fine sediment mass increased with modelled sediment pressure. The practical implications of these findings are that (i) targets for fine sediment loads need to take into account the ability of streams to transport/retain fine sediment, and (ii) where agricultural mitigation measures are implemented to reduce delivery of sediment, river management to mobilise/remove fines may also be needed in order to effect an improvement in ecological status in cases where streams are already saturated with fines and unlikely to self-cleanse.

We hypothesise that climate change, together with intensive agricultural systems, will increase the transfer of pollutants from land to water and impact on stream health. This study builds, for the first time, an integrated assessment of nutrient transfers, bringing together a) high-frequency data from the outlets of two surface water-dominated, headwater (~ 10 km2) agricultural catchments, b) event-by-event analysis of nutrient transfers, c) concentration duration curves for comparison with EU Water Framework Directive water quality targets, d) event analysis of location-specific, sub-daily rainfall projections (UKCP, 2009), and e) a linear model relating storm rainfall to phosphorus load. These components, in combination, bring innovation and new insight into the estimation of future phosphorus transfers, which was not available from individual components. The data demonstrated two features of particular concern for climate change impacts. Firstly, the bulk of the suspended sediment and total phosphorus (TP) load (greater than 90% and 80% respectively) was transferred during the highest discharge events. The linear model of rainfall-driven TP transfers estimated that, with the projected increase in winter rainfall (+ 8% to + 17% in the catchments by 2050s), annual event loads might increase by around 9% on average, if agricultural practices remain unchanged. Secondly, events following dry periods of several weeks, particularly in summer, were responsible for high concentrations of phosphorus, but relatively low loads. The high concentrations, associated with low flow, could become more frequent or last longer in the future, with a corresponding increase in the length of time that threshold concentrations (e.g. for water quality status) are exceeded. The results suggest that in order to build resilience in stream health and help mitigate potential increases in diffuse agricultural water pollution due to climate change, land management practices should target contro

Whilst a large body of plot and field-scale research exists on the sources, behaviour and mitigation of diffuse water pollution from agriculture, putting this evidence into a practical, context at large spatial scales to inform policy remains challenging. Understanding the behaviour of pollutants (nutrients, sediment, microbes and pesticides) and the effectiveness of mitigation strategies over whole catchments and long timeframes requires new, interdisciplinary approaches to organise and undertake research. This paper provides an introduction to the demonstration test catchments (DTC) programme, which was established in 2009 to gather empirical evidence on the cost-effectiveness of combinations of diffuse pollution mitigation measures at catchment scales. DTC firstly provides a physical platform of instrumented study catchments in which approaches for the mitigation of diffuse agricultural water pollution can be experimentally tested and iteratively improved. Secondly, it has established national and local knowledge exchange networks between researchers and stakeholders through which research has been co-designed. These have provided a vehicle to disseminate emerging findings to inform policy and land management practice. The role of DTC is that of an outdoor laboratory to develop knowledge and approaches that can be applied in less well studied locations. The research platform approach developed through DTC has brought together disparate research groups from different disciplines and institutions through nationally coordinated activities. It offers a model that can be adopted to organise research on other complex, interdisciplinary problems to inform policy and operational decision-making.

This paper uses high-frequency bankside measurements from three catchments selected as part of the UK government-funded Demonstration Test Catchments (DTC) project. We compare the hydrological and hydrochemical patterns during the water year 2011–2012 from the Wylye tributary of the River Avon with mixed land use, the Blackwater tributary of the River Wensum with arable land use and the Newby Beck tributary of the River Eden with grassland land use. The beginning of the hydrological year was unusually dry and all three catchments were in states of drought. A sudden change to a wet summer occurred in April 2012 when a heavy rainfall event affected all three catchments. The year-long time series and the individual storm responses captured by in situ nutrient measurements of nitrate and phosphorus (total phosphorus and total reactive phosphorus) concentrations at each site reveal different pollutant sources and pathways operating in each catchment. Large storm-induced nutrient transfers of nitrogen and or phosphorus to each stream were recorded at all three sites during the late April rainfall event. Hysteresis loops suggested transport-limited delivery of nitrate in the Blackwater and of total phosphorus in the Wylye and Newby Beck, which was thought to be exacerbated by the dry antecedent conditions prior to the storm. The high rate of nutrient transport in each system highlights the scale of the challenges faced by environmental managers when designing mitigation measures to reduce the flux of nutrients to rivers from diffuse agricultural sources. It also highlights the scale of the challenge in adapting to future extreme weather events under a changing climate.

The biodegradation of organic matter ingressing spawning gravels in rivers exerts an oxygen demand which is believed to contribute to detrimental impacts on aquatic ecology including salmonids. Catchment management strategies therefore require reliable information on the key sources of sediment-bound organic matter. Accordingly, a novel source fingerprinting procedure based on analyses of bulk stable 13C and 15N isotope values and organic molecular structures detected using near infrared reflectance (NIR) spectroscopy was tested for assessing the primary sources of sediment-bound organic matter infiltrating artificial Atlantic salmon spawning redds in five rivers across England and Wales. Statistically-verified source fingerprints were identified using a combination of the Kruskal–Wallis H-test, principal component analysis and GA-driven discriminant function analysis. Interstitial sediment samples were obtained from artificial redds using retrievable basket traps inserted at the start of the salmonid spawning season and extracted subsequently in conjunction with critical juvenile phases (eyeing, hatch, emergence, late spawning) of fish development associated with incubation and emergence. Over the duration of these four basket extractions, the overall relative frequency-weighted average median source contributions to the interstitial sediment-bound organic matter sampled in the study rivers ranged between 26% (full uncertainty range 0–100%) and 44% (full uncertainty range 0–100%) for farm yard manures/slurries, 11% (full uncertainty range 0–75%) and 48% (full uncertainty range 0–99%) for damaged road verges, 16% (full uncertainty range (0–78%) and 52% (full uncertainty range (0–100%) for decaying instream vegetation and 4% (full uncertainty range 0–31%) and 10% (full uncertainty range (0–44%) for human septic waste. The results of mass conservation tests suggest that the procedure combining bulk 13C and 15N isotope values and NIR spectroscopy data on organic molecu

The Water Framework Directive (WFD) identifies diffuse pollution as a long-term threat to water quality. Farming contributes significantly to this pollution. There is a clear need for mitigation measures and assessment of their efficacy. Accordingly, Demonstration Test Catchments (DTCs) have been established in England to test the effectiveness of changes in agricultural practice on river water quality and ecology. However, the presence of groundwater in these hydrological systems implies a wide range of travel times for pollutants from source to receptor. Unless flow routes are better characterised, it will be difficult to gauge the success of control measures in the short-term. Using 3D modelling and supplementary hydrochemical information, this study considers the hydrogeology of several sub-catchments in the Avon DTC, southern England. Data suggest that groundwater ages >25 years exist in parts of the catchments; clearly observations like these must be used to judge the likely effectiveness of targeted control measures. The revealed hydrogeological complexity of the Avon catchment is unlikely to be unique, so the techniques described here should be applicable to other lowland river systems with moderate-to-high baseflow indices (>0.5). To support the WFD, groundwater conceptual models should inform the design of effective measures for diffuse pollution mitigation.

Excessive mobilisation and delivery of fine sediments to water bodies has detrimental impacts on those biotic elements used for waterbody status classification, including macroinvertebrates, fish and macrophytes. The relationship between fine sediment and diatoms is a reciprocal one, with diatoms influencing the production and retention of fine sediments, as well as being impacted by fine sediment derived from the catchment. Diatoms can increase the retention of fine sediments in benthic environments as a result of various mechanisms, including shear stress modification, surface adhesion, and bed clogging. Enhanced retention of fines can have important implications for the transfer and fate of sediment-associated nutrients and contaminants. Excessive fine sediment loadings impact diatom assemblages via shading, burial and scouring. Indirect impacts of increased fine sediment stress can result from changes in habitat availability, herbivory or predator changes which cascade down the food chain. Indices based on the relative abundance of motile species have been proposed for using diatoms to assess waterbody status. However, disentangling the potential confounding impacts of alternative environmental stressors on these simplistic indices remains a significant challenge. Coupling sediment pressure models, capable of predicting the potential impact of mitigation, with meaningful diatom based indices, remains a challenge for catchment planning for sediment abatement and the attainment of improved, or protection of, ecological status. Existing targets for sediment management in river catchments are largely based on relationships between sediment stress and impacts on fish, but these thresholds have been widely criticised. There remains a need to develop generic modelling toolkits coupling sediment stress and impacts on a range of biological quality elements to support a weight of evidence approach.

Dissolved oxygen (DO) plays a critical role in the development of the juvenile stages of benthic spawning fish and salmonids in particular. Factors influencing the DO regime within spawning gravels include the accumulation of fine sediment, penetration of groundwater or surface water into the gravels, thermal regime, and the consumption of oxygen by sediment and its associated organic fractions. In this field study, we quantify the DO regime within an artificial salmon redd at high temporal resolution. The environment within the redd is shown to be complex, with large variations in DO. Application of a numerical model (SIDO-UK) enables for the first time, the quantification of the relative contributions to DO consumption from thermal regime, sediment accumulation and sediment oxygen demand. Sediment accumulation is shown to have a minor impact on DO in the redd whereas upwelling groundwater is identified as the most likely cause of the major changes in DO. Bed mobility has a minor impact on DO regime of the redd. The effects of fine sediment and oxygen supply on salmon embryo survival are estimated. Implications for river catchment management and prospects for future research are discussed.

The ingress of particulate material into freshwater spawning substrates is thought to be contributing to the declining success of salmonids reported over recent years for many rivers. Accordingly, the need for reliable information on the key sources of the sediment problem has progressed up the management agenda. Whilst previous work has focussed on apportioning the sources of minerogenic fine sediment degrading spawning habitats, there remains a need to develop procedures for generating corresponding information for the potentially harmful sediment-bound organic matter that represents an overlooked component of interstitial sediment. A source tracing procedure based on composite signatures combining bulk stable 13C and 15N isotope values with organic molecular structures detected using near infrared (NIR) reflectance spectroscopy was therefore used to assess the primary sources of sediment-bound organic matter sampled from artificial spawning redds. Composite signatures were selected using a combination of the Kruskal–Wallis H-test, principal component analysis and GA-driven discriminant function analysis. Interstitial sediment samples were collected using time-integrating basket traps which were inserted at the start of the salmonid spawning season and extracted in conjunction with critical phases of fish development (eyeing, hatch, emergence, late spawning). Over the duration of these four basket extractions, the overall relative frequency-weighted average median (±95% confidence limits) source contributions to the interstitial sediment-bound organic matter were estimated to be in the order: instream decaying vegetation (39 ± b1%; full range 0–77%); damaged road verges (28 ± b1%; full range 0–77%); septic tanks (22 ± b1%; full range 0–50%), and; farm yard manures/slurries (11 ± b1%; full range 0–61%). The reported procedure provides a promising basis for understanding the key sources of interstitial sediment-bound organic matter and can be applied alongside appor

The interplay between erosion and deposition are fundamental characteristics of river basins. These processes result in the delivery, retention and conveyance of sediment through river systems. Although the delivery of sediment to rivers is a natural phenomenon, in recent years there has been increasing concern about the enhancement of sediment loadings as a result of anthropogenic activities. The presence of macrophytes in river channels tends to increase the retention of fine sediment leading to changes in bed composition. However, a complex relationship exists between macrophytes and fine sediment: macrophytes affect the conveyance of fine sediment and are, in turn, affected by the sediment loading. This review deals with these two reciprocal effects and, in particular, summarizes the available evidence base on the impact of fine sediment on macrophytes. Increased inputs of fine sediment appear to have both direct and indirect impacts on the macrophyte community, altering light availability, and the structure and quality of the river bed. The nature of these impacts depends largely on the rate of deposition and the nature of the material deposited. Changes in macrophyte community composition may ensue where the depositing material is more nutrient rich than the natural river bed. Many of the changes in macrophyte flora that occur with increased fine sediment inputs are likely to closely parallel those that occur with increased dissolved nutrient availability. If attempts to manage nutrient inputs to rivers are to achieve their goals, it is critical that fine sediment-associated nutrient dynamics and transfers are considered.

The sustainable use of water resources requires clear guidelines for the management of diffuse pollution inputs to rivers. Without informed guidelines, management decisions are unlikely to deliver cost-effective improvements in the quality of rivers as required by current water policy. Here, we review the evidence available for deriving improved guidelines on the loading of fine sediment to rivers based on the impact on macro-invertebrates. The relationship between macro-invertebrates and fine sediments is poorly defined. Studies of the impacts of fine sediment on macro-invertebrates have been undertaken at various scales, which has an influence on the range of responses displayed and the reliability of the results obtained; results obtained from investigations at smaller scales may not manifest at the scale required to manage rivers and vice versa. Many of the identified effects of increased loading of fine sediment on macro-invertebrates occur as a consequence of deposition on the river bed, yet many current management guidelines are based on suspended sediment targets. On this basis, existing water quality guidelines for sediment management are unlikely to be appropriate.

Sediment plays a pivotal role in determining the physical, chemical and biological integrity of aquatic ecosystems. A range of factors influences the impacts of sediment pressures on aquatic biota, including concentration, duration of exposure, composition and particle size. In recognition of the need to assess environmental status for sediment and mitigate excessive sediment pressures on aquatic habitats, both water column and river substrate metrics have been proposed as river sediment targets. Water column metrics include light penetration, turbidity, sediment concentration summary statistics and sediment regimes. Substrate metrics include embeddedness, the fredle index and riffle stability. Identification of meaningful numeric targets along these lines has, however, been undermined by various issues including the uncertainty associated with toxicological dose-response profiles and the impracticalities of deploying statistically robust sampling strategies capable of supporting catchment-scale targets. Many of the thresholds reported are based on correlative relationships that fail to capture the specific mechanisms controlling sediment impacts on aquatic habitats and are stationary in nature. Temporal windows represented by the key life stages of specific species must be given greater emphasis. Given such issues and the need to support the revision of sediment targets for river catchment management, it is proposed that greater emphasis should be placed on developing generic modelling toolkits with the functionality for coupling current or future projected sediment regimes with biological response for a range of biota. Such tools should permit the identification of river catchment-specific targets within a national context, based on biological effect and incorporate sufficient flexibility for utilizing updated physical, chemical, biological and catchment attribute data. Confidence will continue to be required in compliance screening to ensure cost-effective manage

Establishment of water quality criteria to guide catchment sediment management is required by the European Union (EU) Water Framework Directive. The topic, however, is hotly contested among scientists and policy makers. Existing legislation with regard to fine sediment was set by the EU Freshwater Fish Directive. Its guideline, i.e. mean annual suspended sediment concentration, is 25 mg l-1. Such a static target fails to capture the episodic nature of sediment transport. Furthermore, application of such global standards is inappropriate for a pollutant that is strongly controlled by spatial variation in key catchment drivers. Paleolimnology offers an approach for assessing background sediment pressures on watercourses, enabling determination of values for times pre-dating agricultural intensification.Wepropose that Modern Background Sediment Delivery to Rivers (MBSDR) across England and Wales can be determined using paleolimnology to quantify maximum feasible sediment reduction. No management programme should aim to reduce sediment loss to values below those resulting from background, natural physiographic and/or hydrological controls. Lacking generic tools to quantify process linkages between sediment pressures and biological impact, we propose that MBSDR could be taken to represent ecological demand for sediment inputs into watercourses required to support healthy aquatic habitats. In situations where generic tools exist for coupling sediment pressures and ecological impacts, assessment of MBSDR could be used to correct the gap between current or future projected sediment loss and biological condition. Existing paleolimnological data on sediment yields across England and Wales are presented to illustrate the approach and provide preliminary national estimates of MBSDR. We briefly consider the basis for reconstructing sediment yields using a paleolimnological approach and analyse temporal trends in published sediment yield, inferred for a range of landscape types.

Contains fulltext : 80515.pdf (publisher's version ) (Closed access), Heterozygous copy-number variants and SNPs of CNTNAP2 and NRXN1, two distantly related members of the neurexin superfamily, have been repeatedly associated with a wide spectrum of neuropsychiatric disorders, such as developmental language disorders, autism spectrum disorders, epilepsy, and schizophrenia. We now identified homozygous and compound-heterozygous deletions and mutations via molecular karyotyping and mutational screening in CNTNAP2 and NRXN1 in four patients with severe mental retardation (MR) and variable features, such as autistic behavior, epilepsy, and breathing anomalies, phenotypically overlapping with Pitt-Hopkins syndrome. With a frequency of at least 1% in our cohort of 179 patients, recessive defects in CNTNAP2 appear to significantly contribute to severe MR. Whereas the established synaptic role of NRXN1 suggests that synaptic defects contribute to the associated neuropsychiatric disorders and to severe MR as reported here, evidence for a synaptic role of the CNTNAP2-encoded protein CASPR2 has so far been lacking. Using Drosophila as a model, we now show that, as known for fly Nrx-I, the CASPR2 ortholog Nrx-IV might also localize to synapses. Overexpression of either protein can reorganize synaptic morphology and induce increased density of active zones, the synaptic domains of neurotransmitter release. Moreover, both Nrx-I and Nrx-IV determine the level of the presynaptic active-zone protein bruchpilot, indicating a possible common molecular mechanism in Nrx-I and Nrx-IV mutant conditions. We therefore propose that an analogous shared synaptic mechanism contributes to the similar clinical phenotypes resulting from defects in human NRXN1 and CNTNAP2.