15 results on '"Allione M"'
Search Results
2. Cortical-like mini-columns of neuronal cells on zinc oxide nanowire surfaces
- Author
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Onesto, V., Villani, M., Narducci, R., Malara, N., Imbrogno, A., Allione, M., Costa, N., Coppedè, N., Zappettini, A., Cannistraci, C. V., Cancedda, L., Amato, F., Di Fabrizio, Enzo, and Gentile, F.
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- 2019
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3. Imaging and structural studies of DNA–protein complexes and membrane ion channels
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E. Di Fabrizio, Tania Limongi, Luca Tirinato, Sergei Lopatin, Gobind Das, Manola Moretti, Fabio Benfenati, Fabrizia Cesca, Monica Marini, Marco Allione, Bruno Torre, Andrea Falqui, Andrea Giugni, Alessandro Genovese, Marini, M, Limongi, T, Falqui, A, Genovese, A, Allione, M, Moretti, M, Lopatin, S, Tirinato, L, Das, G, Torre, B, Giugni, A, Cesca, F, Benfenati, F, and Di Fabrizio, E.
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0301 basic medicine ,Materials science ,Lipid Bilayers ,Nanotechnology ,Inbred C57BL ,Electron ,Ion Channels ,Mice ,03 medical and health sciences ,Microscopy, Electron, Transmission ,Nucleic Acids ,Microscopy ,Animals ,Transmission ,General Materials Science ,Lipid bilayer ,High-resolution transmission electron microscopy ,Ion channel ,Neurons ,Resolution (electron density) ,DNA ,Mice, Inbred C57BL ,030104 developmental biology ,Membrane ,N/A ,Biophysics ,Nucleic acid ,Rad51 Recombinase ,Macromolecule - Abstract
In bio-imaging by electron microscopy, damage of the sample and limited contrast are the two main hurdles for reaching high image quality. We extend a new preparation method based on nanofabrication and super-hydrophobicity to the imaging and structural studies of nucleic acids, nucleic acid–protein complexes (DNA/Rad51 repair protein complex) and neuronal ion channels (gap-junction, K+ and GABAA channels) as paradigms of biological significance and increasing complexity. The preparation method is based on the liquid phase and is compatible with physiological conditions. Only in the very last stage, samples are dried for TEM analysis. Conventional TEM and high-resolution TEM (HRTEM) were used to achieve a resolution of 3.3 and 1.5 Å, respectively. The EM dataset quality allows the determination of relevant structural and metrological information on the DNA structure, DNA–protein interactions and ion channels, allowing the identification of specific macromolecules and their structure.
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- 2017
4. Cortical-like mini-columns of neuronal cells on zinc oxide nanowire surfaces
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Alessandra Imbrogno, Marco Allione, N. Costa, Carlo Vittorio Cannistraci, Valentina Onesto, Enzo Di Fabrizio, Francesco Gentile, Natalia Malara, A. Zappettini, Francesco Amato, Roberto Narducci, Nicola Coppedè, Marco Villani, Laura Cancedda, Onesto, V., Villani, M., Narducci, R., Malara, N., Imbrogno, A., Allione, M., Costa, N., Coppedè, N., Zappettini, A., Cannistraci, C. V., Cancedda, L., Amato, F., DI Fabrizio, Enzo, and Gentile, F.
- Subjects
0301 basic medicine ,Materials science ,Binding energy ,Cell Culture Techniques ,Nanowire ,lcsh:Medicine ,Neural-cell growth ,Energy minimization ,Hippocampus ,Models, Biological ,Fractal dimension ,Article ,neuronal cells ,03 medical and health sciences ,0302 clinical medicine ,Neural Stem Cells ,Supercluster ,nanostructures ,medicine ,Animals ,Computer Simulation ,Rats, Wistar ,lcsh:Science ,Cells, Cultured ,Neurons ,Multidisciplinary ,Neocortex ,Minicolumns ,Tissue Scaffolds ,Nanowires ,lcsh:R ,Adhesion ,Cerebral cortex ,Embryo, Mammalian ,Publisher Correction ,neuron ,030104 developmental biology ,medicine.anatomical_structure ,zno ,Biophysics ,lcsh:Q ,Zinc oxide nanowires ,Nerve Net ,Zinc Oxide ,nanorods ,030217 neurology & neurosurgery - Abstract
A long-standing goal of neuroscience is a theory that explains the formation of the minicolumns in the cerebral cortex. Minicolumns are the elementary computational units of the mature neocortex. Here, we use zinc oxide nanowires with controlled topography as substrates for neural-cell growth. We observe that neuronal cells form networks where the networks characteristics exhibit a high sensitivity to the topography of the nanowires. For certain values of nanowires density and fractal dimension, neuronal networks express small world attributes, with enhanced information flows. We observe that neurons in these networks congregate in superclusters of approximately 200 neurons. We demonstrate that this number is not coincidental: the maximum number of cells in a supercluster is limited by the competition between the binding energy between cells, adhesion to the substrate, and the kinetic energy of the system. Since cortical minicolumns have similar size, similar anatomical and topological characteristics of neuronal superclusters on nanowires surfaces, we conjecture that the formation of cortical minicolumns is likewise guided by the interplay between energy minimization, information optimization and topology. For the first time, we provide a clear account of the mechanisms of formation of the minicolumns in the brain.
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- 2019
5. Microfluidics for 3D Cell and Tissue Cultures: Microfabricative and Ethical Aspects Updates.
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Limongi T, Guzzi F, Parrotta E, Candeloro P, Scalise S, Lucchino V, Gentile F, Tirinato L, Coluccio ML, Torre B, Allione M, Marini M, Susa F, Fabrizio ED, Cuda G, and Perozziello G
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- Animals, Biocompatible Materials, Cell Culture Techniques methods, Lab-On-A-Chip Devices, Microfluidics methods
- Abstract
The necessity to improve in vitro cell screening assays is becoming ever more important. Pharmaceutical companies, research laboratories and hospitals require technologies that help to speed up conventional screening and therapeutic procedures to produce more data in a short time in a realistic and reliable manner. The design of new solutions for test biomaterials and active molecules is one of the urgent problems of preclinical screening and the limited correlation between in vitro and in vivo data remains one of the major issues. The establishment of the most suitable in vitro model provides reduction in times, costs and, last but not least, in the number of animal experiments as recommended by the 3Rs (replace, reduce, refine) ethical guiding principles for testing involving animals. Although two-dimensional (2D) traditional cell screening assays are generally cheap and practical to manage, they have strong limitations, as cells, within the transition from the three-dimensional (3D) in vivo to the 2D in vitro growth conditions, do not properly mimic the real morphologies and physiology of their native tissues. In the study of human pathologies, especially, animal experiments provide data closer to what happens in the target organ or apparatus, but they imply slow and costly procedures and they generally do not fully accomplish the 3Rs recommendations, i.e., the amount of laboratory animals and the stress that they undergo must be minimized. Microfluidic devices seem to offer different advantages in relation to the mentioned issues. This review aims to describe the critical issues connected with the conventional cells culture and screening procedures, showing what happens in the in vivo physiological micro and nano environment also from a physical point of view. During the discussion, some microfluidic tools and their components are described to explain how these devices can circumvent the actual limitations described in the introduction.
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- 2022
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6. Lipid-Based Nanovesicular Drug Delivery Systems.
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Limongi T, Susa F, Marini M, Allione M, Torre B, Pisano R, and di Fabrizio E
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In designing a new drug, considering the preferred route of administration, various requirements must be fulfilled. Active molecules pharmacokinetics should be reliable with a valuable drug profile as well as well-tolerated. Over the past 20 years, nanotechnologies have provided alternative and complementary solutions to those of an exclusively pharmaceutical chemical nature since scientists and clinicians invested in the optimization of materials and methods capable of regulating effective drug delivery at the nanometer scale. Among the many drug delivery carriers, lipid nano vesicular ones successfully support clinical candidates approaching such problems as insolubility, biodegradation, and difficulty in overcoming the skin and biological barriers such as the blood-brain one. In this review, the authors discussed the structure, the biochemical composition, and the drug delivery applications of lipid nanovesicular carriers, namely, niosomes, proniosomes, ethosomes, transferosomes, pharmacosomes, ufasomes, phytosomes, catanionic vesicles, and extracellular vesicles.
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- 2021
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7. Micro/Nanopatterned Superhydrophobic Surfaces Fabrication for Biomolecules and Biomaterials Manipulation and Analysis.
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Allione M, Limongi T, Marini M, Torre B, Zhang P, Moretti M, Perozziello G, Candeloro P, Napione L, Pirri CF, and Di Fabrizio E
- Abstract
Superhydrophobic surfaces display an extraordinary repulsion to water and water-based solutions. This effect emerges from the interplay of intrinsic hydrophobicity of the surface and its morphology. These surfaces have been established for a long time and have been studied for decades. The increasing interest in recent years has been focused towards applications in many different fields and, in particular, biomedical applications. In this paper, we review the progress achieved in the last years in the fabrication of regularly patterned superhydrophobic surfaces in many different materials and their exploitation for the manipulation and characterization of biomaterial, with particular emphasis on the issues affecting the yields of the fabrication processes and the quality of the manufactured devices.
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- 2021
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8. DNA Studies: Latest Spectroscopic and Structural Approaches.
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Marini M, Legittimo F, Torre B, Allione M, Limongi T, Scaltrito L, Pirri CF, and di Fabrizio E
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This review looks at the different approaches, techniques, and materials devoted to DNA studies. In the past few decades, DNA nanotechnology, micro-fabrication, imaging, and spectroscopies have been tailored and combined for a broad range of medical-oriented applications. The continuous advancements in miniaturization of the devices, as well as the continuous need to study biological material structures and interactions, down to single molecules, have increase the interdisciplinarity of emerging technologies. In the following paragraphs, we will focus on recent sensing approaches, with a particular effort attributed to cutting-edge techniques for structural and mechanical studies of nucleic acids.
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- 2021
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9. Drug Delivery Applications of Three-Dimensional Printed (3DP) Mesoporous Scaffolds.
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Limongi T, Susa F, Allione M, and di Fabrizio E
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Mesoporous materials are structures characterized by a well-ordered large pore system with uniform porous dimensions ranging between 2 and 50 nm. Typical samples are zeolite, carbon molecular sieves, porous metal oxides, organic and inorganic porous hybrid and pillared materials, silica clathrate and clathrate hydrates compounds. Improvement in biochemistry and materials science led to the design and implementation of different types of porous materials ranging from rigid to soft two-dimensional (2D) and three-dimensional (3D) skeletons. The present review focuses on the use of three-dimensional printed (3DP) mesoporous scaffolds suitable for a wide range of drug delivery applications, due to their intrinsic high surface area and high pore volume. In the first part, the importance of the porosity of materials employed for drug delivery application was discussed focusing on mesoporous materials. At the end of the introduction, hard and soft templating synthesis for the realization of ordered 2D/3D mesostructured porous materials were described. In the second part, 3DP fabrication techniques, including fused deposition modelling, material jetting as inkjet printing, electron beam melting, selective laser sintering, stereolithography and digital light processing, electrospinning, and two-photon polymerization were described. In the last section, through recent bibliographic research, a wide number of 3D printed mesoporous materials, for in vitro and in vivo drug delivery applications, most of which relate to bone cells and tissues, were presented and summarized in a table in which all the technical and bibliographical details were reported. This review highlights, to a very cross-sectional audience, how the interdisciplinarity of certain branches of knowledge, as those of materials science and nano-microfabrication are, represent a growing valuable aid in the advanced forum for the science and technology of pharmaceutics and biopharmaceutics.
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- 2020
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10. A droplet reactor on a super-hydrophobic surface allows control and characterization of amyloid fibril growth.
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Zhang P, Moretti M, Allione M, Tian Y, Ordonez-Loza J, Altamura D, Giannini C, Torre B, Das G, Li E, Thoroddsen ST, Sarathy SM, Autiero I, Giugni A, Gentile F, Malara N, Marini M, and Di Fabrizio E
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- Amyloid ultrastructure, Microscopy, Atomic Force, Molecular Dynamics Simulation, Protein Folding, Spectrum Analysis, Structure-Activity Relationship, X-Ray Diffraction, Amyloid chemistry, Hydrophobic and Hydrophilic Interactions, Protein Aggregates
- Abstract
Methods to produce protein amyloid fibrils, in vitro, and in situ structure characterization, are of primary importance in biology, medicine, and pharmacology. We first demonstrated the droplet on a super-hydrophobic substrate as the reactor to produce protein amyloid fibrils with real-time monitoring of the growth process by using combined light-sheet microscopy and thermal imaging. The molecular structures were characterized by Raman spectroscopy, X-ray diffraction and X-ray scattering. We demonstrated that the convective flow induced by the temperature gradient of the sample is the main driving force in the growth of well-ordered protein fibrils. Particular attention was devoted to PHF6 peptide and full-length Tau441 protein to form amyloid fibrils. By a combined experimental with the molecular dynamics simulations, the conformational polymorphism of these amyloid fibrils were characterized. The study provided a feasible procedure to optimize the amyloid fibrils formation and characterizations of other types of proteins in future studies.
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- 2020
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11. Nanomechanical DNA resonators for sensing and structural analysis of DNA-ligand complexes.
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Stassi S, Marini M, Allione M, Lopatin S, Marson D, Laurini E, Pricl S, Pirri CF, Ricciardi C, and Di Fabrizio E
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- Antineoplastic Agents chemistry, Cisplatin chemistry, Crystallography, X-Ray, Microscopy, Electron, Scanning, Microscopy, Fluorescence, Molecular Dynamics Simulation, Neoplasms drug therapy, Protein Binding, Stress, Mechanical, DNA chemistry, Intercalating Agents chemistry, Ligands, Nanomedicine methods
- Abstract
The effect of direct or indirect binding of intercalant molecules on DNA structure is of fundamental importance in understanding the biological functioning of DNA. Here we report on self-suspended DNA nanobundles as ultrasensitive nanomechanical resonators for structural studies of DNA-ligand complexes. Such vibrating nanostructures represent the smallest mechanical resonator entirely composed of DNA. A correlative analysis between the mechanical and structural properties is exploited to study the intrinsic changes of double strand DNA, when interacting with different intercalant molecules (YOYO-1 and GelRed) and a chemotherapeutic drug (Cisplatin), at different concentrations. Possible implications of our findings are related to the study of interaction mechanism of a wide category of molecules with DNA, and to further applications in medicine, such as optimal titration of chemotherapeutic drugs and environmental studies for the detection of heavy metals in human serum.
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- 2019
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12. Plasmonic Nanowires for Wide Wavelength Range Molecular Sensing.
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Marinaro G, Das G, Giugni A, Allione M, Torre B, Candeloro P, Kosel J, and Di Fabrizio E
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In this paper, we propose the use of a standing nanowires array, constituted by plasmonic active gold wires grown on iron disks, and partially immersed in a supporting alumina matrix, for surface-enhanced Raman spectroscopy applications. The galvanic process was used to fabricate nanowires in pores of anodized alumina template, making this device cost-effective. This fabrication method allows for the selection of size, diameter, and spatial arrangement of nanowires. The proposed device, thanks to a detailed design analysis, demonstrates a broadband plasmonic enhancement effect useful for many standard excitation wavelengths in the visible and NIR. The trigonal pores arrangement gives an efficiency weakly dependent on polarization. The devices, tested with 633 and 830 nm laser lines, show a significant Raman enhancement factor, up to around 6 × 10⁴, with respect to the flat gold surface, used as a reference for the measurements of the investigated molecules.
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- 2018
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13. Fabrication and Applications of Micro/Nanostructured Devices for Tissue Engineering.
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Limongi T, Tirinato L, Pagliari F, Giugni A, Allione M, Perozziello G, Candeloro P, and Di Fabrizio E
- Abstract
Nanotechnology allows the realization of new materials and devices with basic structural unit in the range of 1-100 nm and characterized by gaining control at the atomic, molecular, and supramolecular level. Reducing the dimensions of a material into the nanoscale range usually results in the change of its physiochemical properties such as reactivity, crystallinity, and solubility. This review treats the convergence of last research news at the interface of nanostructured biomaterials and tissue engineering for emerging biomedical technologies such as scaffolding and tissue regeneration. The present review is organized into three main sections. The introduction concerns an overview of the increasing utility of nanostructured materials in the field of tissue engineering. It elucidates how nanotechnology, by working in the submicron length scale, assures the realization of a biocompatible interface that is able to reproduce the physiological cell-matrix interaction. The second, more technical section, concerns the design and fabrication of biocompatible surface characterized by micro- and submicroscale features, using microfabrication, nanolithography, and miscellaneous nanolithographic techniques. In the last part, we review the ongoing tissue engineering application of nanostructured materials and scaffolds in different fields such as neurology, cardiology, orthopedics, and skin tissue regeneration.
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- 2017
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14. Microfluidic device for continuous single cells analysis via Raman spectroscopy enhanced by integrated plasmonic nanodimers.
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Perozziello G, Candeloro P, De Grazia A, Esposito F, Allione M, Coluccio ML, Tallerico R, Valpapuram I, Tirinato L, Das G, Giugni A, Torre B, Veltri P, Kruhne U, Della Valle G, and Di Fabrizio E
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- Humans, K562 Cells, Optical Phenomena, Dimerization, Microfluidic Analytical Techniques instrumentation, Nanoparticles chemistry, Single-Cell Analysis instrumentation, Spectrum Analysis, Raman instrumentation
- Abstract
In this work a Raman flow cytometer is presented. It consists of a microfluidic device that takes advantages of the basic principles of Raman spectroscopy and flow cytometry. The microfluidic device integrates calibrated microfluidic channels- where the cells can flow one-by-one -, allowing single cell Raman analysis. The microfluidic channel integrates plasmonic nanodimers in a fluidic trapping region. In this way it is possible to perform Enhanced Raman Spectroscopy on single cell. These allow a label-free analysis, providing information about the biochemical content of membrane and cytoplasm of the each cell. Experiments are performed on red blood cells (RBCs), peripheral blood lymphocytes (PBLs) and myelogenous leukemia tumor cells (K562).
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- 2016
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15. The structure of DNA by direct imaging.
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Marini M, Falqui A, Moretti M, Limongi T, Allione M, Genovese A, Lopatin S, Tirinato L, Das G, Torre B, Giugni A, Gentile F, Candeloro P, and Di Fabrizio E
- Abstract
The structure of DNA was determined in 1953 by x-ray fiber diffraction. Several attempts have been made to obtain a direct image of DNA with alternative techniques. The direct image is intended to allow a quantitative evaluation of all relevant characteristic lengths present in a molecule. A direct image of DNA, which is different from diffraction in the reciprocal space, is difficult to obtain for two main reasons: the intrinsic very low contrast of the elements that form the molecule and the difficulty of preparing the sample while preserving its pristine shape and size. We show that through a preparation procedure compatible with the DNA physiological conditions, a direct image of a single suspended DNA molecule can be obtained. In the image, all relevant lengths of A-form DNA are measurable. A high-resolution transmission electron microscope that operates at 80 keV with an ultimate resolution of 1.5 Å was used for this experiment. Direct imaging of a single molecule can be used as a method to address biological problems that require knowledge at the single-molecule level, given that the average information obtained by x-ray diffraction of crystals or fibers is not sufficient for detailed structure determination, or when crystals cannot be obtained from biological molecules or are not sufficient in understanding multiple protein configurations.
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- 2015
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