202 results on '"Aleš Iglič"'
Search Results
2. Assessing the Quality of Solvent-Assisted Lipid Bilayers Formed at Different Phases and Aqueous Buffer Media: A QCM-D Study
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Marta Lavrič, Laure Bar, Martin E. Villanueva, Patricia Losada-Pérez, Aleš Iglič, Nikola Novak, and George Cordoyiannis
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supported lipid bilayers ,solvent-assisted lipid bilayers ,vesicle adsorption fusion and rupture ,quartz crystal microbalance with dissipation monitoring ,Chemical technology ,TP1-1185 - Abstract
Supported lipid bilayers (SLBs) are low-complexity biomimetic membranes, serving as popular experimental platforms to study membrane organization and lipid transfer, membrane uptake of nanoparticles and biomolecules, and many other processes. Quartz crystal microbalance with dissipation monitoring has been utilized to probe the influence of several parameters on the quality of SLBs formed on Au- and SiO2-coated sensors. The influence of the aqueous medium (i.e., buffer type) and the adsorption temperature, above and below the lipid melting point, is neatly explored for SLBs of 1,2-dimyristoyl-sn-glycero-3-phosphocholine and 1,2-dipalmitoyl-sn-glycero-3-phosphocholine formed by a solvent exchange. Below the lipid melting temperature, quality variations are observed upon the formation on Au and SiO2 surfaces, with the SLBs being more homogeneous for the latter. We further investigate how the buffer affects the detection of lipid melting in SLBs, a transition that necessitates high-sensitivity and time-consuming surface-sensitive techniques to be detected.
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- 2024
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3. Investigation of nano- and microdomains formed by ceramide 1 phosphate in lipid bilayers
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Dominik Drabik, Mitja Drab, Samo Penič, Aleš Iglič, and Aleksander Czogalla
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Medicine ,Science - Abstract
Abstract Biological membranes are renowned for their intricate complexity, with the formation of membrane domains being pivotal to the successful execution of numerous cellular processes. However, due to their nanoscale characteristics, these domains are often understudied, as the experimental techniques required for quantitative investigation present significant challenges. In this study we employ spot-variation z-scan fluorescence correlation spectroscopy (svzFCS) tailored for artificial lipid vesicles of varying composition and combine this approach with high-resolution imaging. This method has been harnessed to examine the lipid-segregation behavior of distinct types of ceramide-1-phosphate (C1P), a crucial class of signaling molecules, within these membranes. Moreover, we provide a quantitative portrayal of the lipid membranes studied and the domains induced by C1P at both nano and microscales. Given the lack of definitive conclusions from the experimental data obtained, it was supplemented with comprehensive in silico studies—including the analysis of diffusion coefficient via molecular dynamics and domain populations via Monte Carlo simulations. This approach enhanced our insight into the dynamic behavior of these molecules within model lipid membranes, confirming that nano- and microdomains can co-exist in lipid vesicles.
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- 2023
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4. Experimental and theoretical model for the origin of coiling of cellular protrusions around fibers
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Raj Kumar Sadhu, Christian Hernandez-Padilla, Yael Eshed Eisenbach, Samo Penič, Lixia Zhang, Harshad D. Vishwasrao, Bahareh Behkam, Konstantinos Konstantopoulos, Hari Shroff, Aleš Iglič, Elior Peles, Amrinder S. Nain, and Nir S. Gov
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Science - Abstract
Abstract Protrusions at the leading-edge of a cell play an important role in sensing the extracellular cues during cellular spreading and motility. Recent studies provided indications that these protrusions wrap (coil) around the extracellular fibers. However, the physics of this coiling process, and the mechanisms that drive it, are not well understood. We present a combined theoretical and experimental study of the coiling of cellular protrusions on fibers of different geometry. Our theoretical model describes membrane protrusions that are produced by curved membrane proteins that recruit the protrusive forces of actin polymerization, and identifies the role of bending and adhesion energies in orienting the leading-edges of the protrusions along the azimuthal (coiling) direction. Our model predicts that the cell’s leading-edge coils on fibers with circular cross-section (above some critical radius), but the coiling ceases for flattened fibers of highly elliptical cross-section. These predictions are verified by 3D visualization and quantitation of coiling on suspended fibers using Dual-View light-sheet microscopy (diSPIM). Overall, we provide a theoretical framework, supported by experiments, which explains the physical origin of the coiling phenomenon.
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- 2023
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5. Are Critical Fluctuations Responsible for Glass Formation?
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Szymon Starzonek, Joanna Łoś, Sylwester J. Rzoska, Aleksandra Drozd-Rzoska, and Aleš Iglič
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glass ,critical phenomena ,phase transitions ,liquid crystals ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
The dynamic heterogeneities occurring just before the transition to the glassy phase have been named as the cause of amorphization in supercooled systems. Numerous studies conducted so far have confirmed this hypothesis, and based on it, a widely accepted solution to the puzzle of glass transition has been developed. This report focuses on verifying the existence of a strong pretransitional anomaly near the glass transition Tg. For this purpose, supercooled liquid-crystalline systems with a strong rod-like structure were selected. Based on the obtained experimental data, we demonstrate in this article that the previously postulated dynamic heterogeneities exhibit a critical characteristic, meaning a strong pretransitional anomaly can be observed with the described critical exponent α=0.5. Due to this property, it can be concluded that these heterogeneities are critical fluctuations, and consequently, the transition to the glassy state can be described based on the theory of critical phenomena. To measure the pretransitional anomaly near Tg in supercooled liquid-crystalline systems, broadband dielectric spectroscopy (BDS) and nonlinear dielectric effect (NDE) methods were applied. The exponent α provides insight into the nature and intensity of critical fluctuations in the system. A value of α=0.5 suggests that the fluctuations become increasingly intense as the system approaches the critical point, contributing to the divergence in specific heat. Understanding the role of critical fluctuations in the glass transition is crucial for innovating and improving a wide range of materials for energy storage, materials design, biomedical applications, food preservation, and environmental sustainability. These advancements can lead to materials with superior properties, optimized manufacturing processes, and applications that meet the demands of modern technology and sustainability challenges.
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- 2024
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6. Coupling of nematic in-plane orientational ordering and equilibrium shapes of closed flexible nematic shells
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Luka Mesarec, Wojciech Góźdź, Veronika Kralj-Iglič, Samo Kralj, and Aleš Iglič
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Medicine ,Science - Abstract
Abstract The impact of the intrinsic curvature of in-plane orientationally ordered curved flexible nematic molecules attached to closed 3D flexible shells was studied numerically. A Helfrich-Landau-de Gennes-type mesoscopic approach was adopted where the flexible shell’s curvature field and in-plane nematic field are coupled and concomitantly determined in the process of free energy minimisation. We demonstrate that this coupling has the potential to generate a rich diversity of qualitatively new shapes of closed 3D nematic shells and the corresponding specific in-plane orientational ordering textures, which strongly depend on the shell’s volume-to-surface area ratio, so far not predicted in mesoscopic-type numerical studies of 3D shapes of closed flexible nematic shells.
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- 2023
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7. Biaxial Structures of Localized Deformations and Line-like Distortions in Effectively 2D Nematic Films
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Luka Mesarec, Samo Kralj, and Aleš Iglič
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nematic shells ,orientational order ,topological defects ,stomatocytes ,order reconstruction mechanism ,Chemistry ,QD1-999 - Abstract
We numerically studied localized elastic distortions in curved, effectively two-dimensional nematic shells. We used a mesoscopic Landau-de Gennes-type approach, in which the orientational order is theoretically considered by introducing the appropriate tensor nematic order parameter, while the three-dimensional shell shape is described by the curvature tensor. We limited our theoretical consideration to axially symmetric shapes of nematic shells. It was shown that in the surface regions of stomatocyte-class nematic shell shapes with large enough magnitudes of extrinsic (deviatoric) curvature, the direction of the in-plane orientational ordering can be mutually perpendicular above and below the narrow neck region. We demonstrate that such line-like nematic distortion configurations may run along the parallels (i.e., along the circular lines of constant latitude) located in the narrow neck regions of stomatocyte-like nematic shells. It was shown that nematic distortions are enabled by the order reconstruction mechanism. We propose that the regions of nematic shells that are strongly elastically deformed, i.e., topological defects and line-like distortions, may attract appropriately surface-decorated nanoparticles (NPs), which could potentially be useful for the controlled assembly of NPs.
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- 2024
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8. Author Correction: Experimental and theoretical model for the origin of coiling of cellular protrusions around fibers
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Raj Kumar Sadhu, Christian Hernandez-Padilla, Yael Eshed Eisenbach, Samo Penič, Lixia Zhang, Harshad D. Vishwasrao, Bahareh Behkam, Konstantinos Konstantopoulos, Hari Shroff, Aleš Iglič, Elior Peles, Amrinder S. Nain, and Nir S. Gov
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Science - Published
- 2023
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9. Theoretical model of membrane protrusions driven by curved active proteins
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Yoav Ravid, Samo Penič, Yuko Mimori-Kiyosue, Shiro Suetsugu, Aleš Iglič, and Nir S. Gov
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cell membrane ,curved inclusions ,Monte-Carlo simulations ,closed vesicle shapes ,cell motility ,filopodia ,Biology (General) ,QH301-705.5 - Abstract
Eukaryotic cells intrinsically change their shape, by changing the composition of their membrane and by restructuring their underlying cytoskeleton. We present here further studies and extensions of a minimal physical model, describing a closed vesicle with mobile curved membrane protein complexes. The cytoskeletal forces describe the protrusive force due to actin polymerization which is recruited to the membrane by the curved protein complexes. We characterize the phase diagrams of this model, as function of the magnitude of the active forces, nearest-neighbor protein interactions and the proteins’ spontaneous curvature. It was previously shown that this model can explain the formation of lamellipodia-like flat protrusions, and here we explore the regimes where the model can also give rise to filopodia-like tubular protrusions. We extend the simulation with curved components of both convex and concave species, where we find the formation of complex ruffled clusters, as well as internalized invaginations that resemble the process of endocytosis and macropinocytosis. We alter the force model representing the cytoskeleton to simulate the effects of bundled instead of branched structure, resulting in shapes which resemble filopodia.
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- 2023
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10. Modelling how curved active proteins and shear flow pattern cellular shape and motility
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Shubhadeep Sadhukhan, Samo Penič, Aleš Iglič, and Nir S. Gov
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cell motility ,cytoskeleton ,shear flow ,adhesion ,curved membrane protein ,Biology (General) ,QH301-705.5 - Abstract
Cell spreading and motility on an adhesive substrate are driven by the active physical forces generated by the actin cytoskeleton. We have recently shown that coupling curved membrane complexes to protrusive forces, exerted by the actin polymerization that they recruit, provides a mechanism that can give rise to spontaneous membrane shapes and patterns. In the presence of an adhesive substrate, this model was shown to give rise to an emergent motile phenotype, resembling a motile cell. Here, we utilize this “minimal-cell” model to explore the impact of external shear flow on the cell shape and migration on a uniform adhesive flat substrate. We find that in the presence of shear the motile cell reorients such that its leading edge, where the curved active proteins aggregate, faces the shear flow. The flow-facing configuration is found to minimize the adhesion energy by allowing the cell to spread more efficiently over the substrate. For the non-motile vesicle shapes, we find that they mostly slide and roll with the shear flow. We compare these theoretical results with experimental observations, and suggest that the tendency of many cell types to move against the flow may arise from the very general, and non-cell-type-specific mechanism predicted by our model.
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- 2023
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11. Enrichment of plasma in platelets and extracellular vesicles by the counterflow to erythrocyte settling
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Darja Božič, Domen Vozel, Matej Hočevar, Marko Jeran, Zala Jan, Manca Pajnič, Ljubiša Pađen, Aleš Iglič, Saba Battelino, and Veronika Kralj-Iglič
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cellular vesicles ,extracellular vesicles ,microvesicles ,platelet microparticles ,platelet rich plasma ,wound healing ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
In order to prepare optimal platelet and extracellular vesicle (EV)-rich plasma for the treatment of chronic temporal bone inflammation, we studied effects of centrifugation parameters on redistribution of blood constituents in blood samples of 23 patients and 20 volunteers with no record of disease. Concentrations of blood cells and EVs were measured by flow cytometry. Sample content was inspected by scanning electron microscopy. A mathematical model was constructed to interpret the experimental results. The observed enrichment of plasma in platelets and EVs after a single spin of blood depended on the erythrocyte sedimentation rate, thereby indicating the presence of a flow of plasma that carried platelets and EVs in the direction opposite to settling of erythrocytes. Prolonged handling time correlated with the decrease of concentration of platelets and larger EVs in platelet and EV-rich plasma (PVRP), R = −0.538, p = 0.003, indicating cell fragmentation during the processing of samples. In further centrifugation of the obtained plasma, platelet and EV enrichment depended on the average distance of the sample from the centrifuge rotor axis. Based on the agreement of the model predictions with observations, we propose the centrifugation protocol optimal for platelet and EV enrichment and recovery in an individual sample, adjusted to the dimensions of the centrifuge rotor, volume of blood and erythrocyte sedimentation rate.
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- 2022
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12. Inflammatory, Oxidative Stress and Small Cellular Particle Response in HUVEC Induced by Debris from Endoprosthesis Processing
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Zala Jan, Matej Hočevar, Veno Kononenko, Sara Michelini, Neža Repar, Maja Caf, Boštjan Kocjančič, Drago Dolinar, Slavko Kralj, Darko Makovec, Aleš Iglič, Damjana Drobne, Monika Jenko, and Veronika Kralj-Iglič
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endoprosthesis failure ,corundum ,cytokines ,reactive oxygen species ,lipid droplets ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
We studied inflammatory and oxidative stress-related parameters and cytotoxic response of human umbilical vein endothelial cells (HUVEC) to a 24 h treatment with milled particles simulating debris involved in sandblasting of orthopedic implants (OI). We used different abrasives (corundum—(Al2O3), used corundum retrieved from removed OI (u. Al2O3), and zirconia/silica composite (ZrO2/SiO2)). Morphological changes were observed by scanning electron microscopy (SEM). Concentration of Interleukins IL-6 and IL-1β and Tumor Necrosis Factor α (TNF)-α was assessed by enzyme-linked immunosorbent assay (ELISA). Activity of Cholinesterase (ChE) and Glutathione S-transferase (GST) was measured by spectrophotometry. Reactive oxygen species (ROS), lipid droplets (LD) and apoptosis were measured by flow cytometry (FCM). Detachment of the cells from glass and budding of the cell membrane did not differ in the treated and untreated control cells. Increased concentration of IL-1β and of IL-6 was found after treatment with all tested particle types, indicating inflammatory response of the treated cells. Increased ChE activity was found after treatment with u. Al2O3 and ZrO2/SiO2. Increased GST activity was found after treatment with ZrO2/SiO2. Increased LD quantity but not ROS quantity was found after treatment with u. Al2O3. No cytotoxicity was detected after treatment with u. Al2O3. The tested materials in concentrations added to in vitro cell lines were found non-toxic but bioactive and therefore prone to induce a response of the human body to OI.
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- 2023
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13. Active Forces of Myosin Motors May Control Endovesiculation of Red Blood Cells
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Samo Penič, Miha Fošnarič, Luka Mesarec, Aleš Iglič, and Veronika Kralj-Iglič
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myosin generated active forces ,monte carlo simulations ,endovesiclulation ,intrinsic curvature ,red blood cell ,Chemistry ,QD1-999 - Abstract
By using Monte Carlo (MC) simulations, we have shown that the active forces generated by (NMIIA) motor domains bound to F-actin may partially control the endovesiculation of the red blood cell (RBC) membrane. The myosin generated active forces favor pancake-like (torocyte) RBC endovesicles with a large flat central membrane region and a bulby periphery. We suggest that the myosin generated active forces acting on the RBC membrane in the direction perpendicular to the membrane surface towards the interior of the RBC may influence also other RBC shape transformations and the stability of different types of RBC shapes and should be therefore considered in the future theoretical studies of the RBC vesiculation and shape transformations.
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- 2020
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14. Titanium Dioxide Nanotube Arrays for Cardiovascular Stent Applications
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Ita Junkar, Mukta Kulkarni, Metka Benčina, Janez Kovač, Katjuša Mrak-Poljšak, Katja Lakota, Snežna Sodin-Šemrl, Miran Mozetič, and Aleš Iglič
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Chemistry ,QD1-999 - Published
- 2020
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15. Small Cellular Particles from European Spruce Needle Homogenate
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Marko Jeran, Anna Romolo, Vesna Spasovski, Matej Hočevar, Urban Novak, Roman Štukelj, Vid Šuštar, Matic Kisovec, Apolonija Bedina Zavec, Ksenija Kogej, Aleš Iglič, Polonca Trebše, and Veronika Kralj-Iglič
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Picea abies ,spruce needles ,extracellular particles ,extracellular vesicles ,small cellular particles ,interferometric light microscopy ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Small cellular particles (SCPs) are being considered for their role in cell-to-cell communication. We harvested and characterized SCPs from spruce needle homogenate. SCPs were isolated by differential ultracentrifugation. They were imaged by scanning electron microscope (SEM) and cryogenic transmission electron microscope (cryo TEM), assessed for their number density and hydrodynamic diameter by interferometric light microscopy (ILM) and flow cytometry (FCM), total phenolic content (TPC) by UV-vis spectroscopy, and terpene content by gas chromatography-mass spectrometry (GC-MS). The supernatant after ultracentrifugation at 50,000× g contained bilayer-enclosed vesicles whereas in the isolate we observed small particles of other types and only a few vesicles. The number density of cell-sized particles (CSPs) (larger than 2 μm) and meso-sized particles (MSPs) (cca 400 nm–2 µm) was about four orders of magnitude lower than the number density of SCPs (sized below 500 nm). The average hydrodynamic diameter of SCPs measured in 10,029 SCPs was 161 ± 133 nm. TCP decreased considerably due to 5-day aging. Volatile terpenoid content was found in the pellet after 300× g. The above results indicate that spruce needle homogenate is a source of vesicles to be explored for potential delivery use.
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- 2023
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16. Autologous Platelet and Extracellular Vesicle-Rich Plasma as Therapeutic Fluid: A Review
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Kaja Troha, Domen Vozel, Matevž Arko, Apolonija Bedina Zavec, Drago Dolinar, Matej Hočevar, Zala Jan, Matic Kisovec, Boštjan Kocjančič, Ljubiša Pađen, Manca Pajnič, Samo Penič, Anna Romolo, Neža Repar, Vesna Spasovski, Nejc Steiner, Vid Šuštar, Aleš Iglič, Damjana Drobne, Ksenija Kogej, Saba Battelino, and Veronika Kralj-Iglič
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platelet-rich plasma ,platelets ,centrifugation ,extracellular vesicles ,small cellular particles ,wound healing ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The preparation of autologous platelet and extracellular vesicle-rich plasma (PVRP) has been explored in many medical fields with the aim to benefit from its healing potential. In parallel, efforts are being invested to understand the function and dynamics of PVRP that is complex in its composition and interactions. Some clinical evidence reveals beneficial effects of PVRP, while some report that there were no effects. To optimize the preparation methods, functions and mechanisms of PVRP, its constituents should be better understood. With the intention to promote further studies of autologous therapeutic PVRP, we performed a review on some topics regarding PVRP composition, harvesting, assessment and preservation, and also on clinical experience following PVRP application in humans and animals. Besides the acknowledged actions of platelets, leukocytes and different molecules, we focus on extracellular vesicles that were found abundant in PVRP.
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- 2023
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17. Assessment of Small Cellular Particles from Four Different Natural Sources and Liposomes by Interferometric Light Microscopy
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Anna Romolo, Zala Jan, Apolonija Bedina Zavec, Matic Kisovec, Vesna Arrigler, Vesna Spasovski, Marjetka Podobnik, Aleš Iglič, Gabriella Pocsfalvi, Ksenija Kogej, and Veronika Kralj-Iglič
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interferometric light microscopy ,interferometric nanotracking analysis ,nanoparticle tracking analysis ,concentration of extracellular particles ,size of extracellular particles ,dynamic light scattering ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Small particles in natural sources are a subject of interest for their potential role in intercellular, inter-organism, and inter-species interactions, but their harvesting and assessment present a challenge due to their small size and transient identity. We applied a recently developed interferometric light microscopy (ILM) to assess the number density and hydrodynamic radius (Rh) of isolated small cellular particles (SCPs) from blood preparations (plasma and washed erythrocytes) (B), spruce needle homogenate (S), suspension of flagellae of microalgae Tetraselmis chuii (T), conditioned culture media of microalgae Phaeodactylum tricornutum (P), and liposomes (L). The aliquots were also assessed by flow cytometry (FCM), dynamic light scattering (DLS), ultraviolet-visible spectrometry (UV-vis), and imaging by cryogenic transmission electron microscopy (cryo-TEM). In Rh, ILM showed agreement with DLS within the measurement error in 10 out of 13 samples and was the only method used here that yielded particle density. Cryo-TEM revealed that representative SCPs from Tetraselmis chuii flagella (T) did not have a globular shape, so the interpretation by Rh of the batch methods was biased. Cryo-TEM showed the presence of thin filaments in isolates from Phaeodactylum tricornutum conditioned culture media (P), which provides an explanation for the considerably larger Rh obtained by batch methods than the sizes of particles observed by cryo-TEM images. ILM proved convenient for assessment of number density and Rh of SCPs in blood preparations (e.g., plasma); therefore, its use in population and clinical studies is indicated.
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- 2022
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18. Differential Capacitance of Electric Double Layer – Influence of Asymmetric Size of Ions, Thickness of Stern Layer and Orientational Ordering of Water Dipoles
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Aleš Iglič, Ekaterina Gongadze, and Veronika Kralj-Iglič
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Asymmetric size of ions ,relative permittivity ,water ordering ,Stern layer ,differential capacitance ,Chemistry ,QD1-999 - Abstract
The mean-field theoretical model of the electric double layer which takes into account the asymmetric finite size of anions and cations and the orientational ordering of water dipoles in the Stern and the diffuse layers is described together with a short description of the main concepts and a brief review of the literature in the theory of the electric double layer. As an example of the application of the described mean-field lattice model of the electric double layer, the influence of different sizes of anions and cations, the influence of the thickness of the Stern layer and the influence of the orientational ordering of water molecules on the asymmetric, bimodal camel-like dependence of differential capacitance on the surface potential is theoretically considered. The presented theoretical model of the electric double layer is flexible enough to be in the future extended to more complicated multicomponent systems with molecules of different sizes and the orientational ordering of molecules.
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- 2019
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19. Nanoporous Stainless Steel Materials for Body Implants—Review of Synthesizing Procedures
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Metka Benčina, Ita Junkar, Alenka Vesel, Miran Mozetič, and Aleš Iglič
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stainless steel ,anodisation ,nanoporous morphology ,Chemistry ,QD1-999 - Abstract
Despite the inadequate biocompatibility, medical-grade stainless steel materials have been used as body implants for decades. The desired biological response of surfaces to specific applications in the body is a highly challenging task, and usually not all the requirements of a biomaterial can be achieved. In recent years, nanostructured surfaces have shown intriguing results as cell selectivity can be achieved by specific surface nanofeatures. Nanoporous structures can be fabricated by anodic oxidation, which has been widely studied for titanium and its alloys, while no systematic studies are so far available for stainless steel (SS) materials. This paper reviews the current state of the art in the anodisation of SS; correlations between the parameters of anodic oxidation and the surface morphology are drawn. The results reported by various authors are scattered because of a variety of experimental configurations. A linear correlation between the pores’ diameter anodisation voltage was deduced, while no correlation with other processing parameters was found obvious. The analyses of available data indicated a lack of systematic experiments, which are recommended to understand the kinetics of pore formation and develop techniques for optimal biocompatibility of stainless steel.
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- 2022
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20. Interaction between Microalgae P. tricornutum and Bacteria Thalassospira sp. for Removal of Bisphenols from Conditioned Media
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David Škufca, Darja Božič, Matej Hočevar, Marko Jeran, Apolonija Bedina Zavec, Matic Kisovec, Marjetka Podobnik, Tadeja Matos, Rok Tomazin, Aleš Iglič, Tjaša Griessler Bulc, Ester Heath, and Veronika Kralj-Iglič
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contaminants of emerging concern ,bisphenol removal ,microalgae ,Phaeodactylum tricornutum ,bacteria ,extracellular vesicles ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
We studied the efficiency of three culture series of the microalgae Phaeodactylum tricornutum (P. tricornutum) and bacteria Thalassospira sp. (axenic microalgae, bacterial culture and co-culture of the two) in removing bisphenols (BPs) from their growth medium. Bacteria were identified by 16S ribosomal RNA polymerase chain reaction (16S rRNA PCR). The microorganism growth rate was determined by flow cytometry. Cultures and isolates of their small cellular particles (SCPs) were imaged by scanning electron microscopy (SEM) and cryogenic transmission electron microscopy (Cryo-TEM). BPs were analyzed by gas chromatography coupled with tandem mass spectrometry (GC-MS/MS). Our results indicate that some organisms may have the ability to remove a specific pollutant with high efficiency. P. tricornutum in axenic culture and in mixed culture removed almost all (more than 99%) of BPC2. Notable differences in the removal of 8 out of 18 BPs between the axenic, mixed and bacterial cultures were found. The overall removals of BPs in axenic P. tricornutum, mixed and bacterial cultures were 11%, 18% and 10%, respectively. Finding the respective organisms and creating microbe societies seems to be key for the improvement of wastewater treatment. As a possible mediating factor, numerous small cellular particles from all three cultures were detected by electron microscopy. Further research on the mechanisms of interspecies communication is needed to advance the understanding of microbial communities at the nano-level.
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- 2022
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21. Budding and Fission of Membrane Vesicles: A Mini Review
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Samo Penič, Luka Mesarec, Miha Fošnarič, Lucyna Mrówczyńska, Henry Hägerstrand, Veronika Kralj-Iglič, and Aleš Iglič
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vesiculation ,vesicle fission ,membrane ordering ,membrane budding ,topological defects ,Physics ,QC1-999 - Abstract
In this mini-review, a brief historical survey of the mechanisms which determine the shapes of liposomes and cells and the budding and fission of their membrane is presented. Special attention is given to the role of orientational ordering of membrane components in thin membrane necks which connect the membrane buds (daughter vesicles) to the parent membrane. It is indicated that topological anti-defects in membrane necks may induce the rupture of the neck and the fission of the membrane daughter vesicles.
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- 2020
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22. Minimizing isotropic and deviatoric membrane energy - An unifying formation mechanism of different cellular membrane nanovesicle types.
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Veronika Kralj-Iglič, Gabriella Pocsfalvi, Luka Mesarec, Vid Šuštar, Henry Hägerstrand, and Aleš Iglič
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Medicine ,Science - Abstract
Tiny membrane-enclosed cellular fragments that can mediate interactions between cells and organisms have recently become a subject of increasing attention. In this work the mechanism of formation of cell membrane nanovesicles (CNVs) was studied experimentally and theoretically. CNVs were isolated by centrifugation and washing of blood cells and observed by optical microscopy and scanning electron microscopy. The shape of the biological membrane in the budding process, as observed in phospholipid vesicles, in erythrocytes and in CNVs, was described by an unifying model. Taking the mean curvature h and the curvature deviator d of the membrane surface as the relevant parameters, the shape and the distribution of membrane constituents were determined theoretically by minimization of membrane free energy. Considering these results and previous results on vesiculation of red blood cells it was interpreted that the budding processes may lead to formation of different types of CNVs as regards the compartment (exo/endovesicles), shape (spherical/tubular/torocytic) and composition (enriched/depleted in particular kinds of molecules). It was concluded that the specificity of pinched off nanovesicles derives from the shape of the membrane constituents and not primarily from their chemical identity, which explains evidences on great heterogeneity of isolated extracellular vesicles with respect to composition.
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- 2020
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23. Investigation of Shape Transformations of Vesicles, Induced by Their Adhesion to Flat Substrates Characterized by Different Adhesion Strength
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Jeel Raval, Aleš Iglič, and Wojciech Góźdź
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lipid vesicles ,bending energy ,vesicle adhesion ,vesicle shape ,membrane budding ,shape transitions ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The adhesion of lipid vesicles to a rigid flat surface is investigated. We examine the influence of the membrane spontaneous curvature, adhesion strength, and the reduced volume on the stability and shape transformations of adhered vesicles. The minimal strength of the adhesion necessary to stabilize the shapes of adhered vesicles belonging to different shape classes is determined. It is shown that the budding of an adhered vesicle may be induced by the change of the adhesion strength. The importance of the free vesicle shape for its susceptibility to adhesion is discussed.
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- 2021
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24. Bio-Performance of Hydrothermally and Plasma-Treated Titanium: The New Generation of Vascular Stents
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Metka Benčina, Niharika Rawat, Katja Lakota, Snežna Sodin-Šemrl, Aleš Iglič, and Ita Junkar
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cardiovascular disease ,metallic stents ,hydrothermal treatment ,non-thermal plasma treatment ,TiO2 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The research presented herein follows an urgent global need for the development of novel surface engineering techniques that would allow the fabrication of next-generation cardiovascular stents, which would drastically reduce cardiovascular diseases (CVD). The combination of hydrothermal treatment (HT) and treatment with highly reactive oxygen plasma (P) allowed for the formation of an oxygen-rich nanostructured surface. The morphology, surface roughness, chemical composition and wettability of the newly prepared oxide layer on the Ti substrate were characterized by scanning electron microscopy (SEM) with energy-dispersive X-ray analysis (EDX), atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS) and water contact angle (WCA) analysis. The alteration of surface characteristics influenced the material’s bio-performance; platelet aggregation and activation was reduced on surfaces treated by hydrothermal treatment, as well as after plasma treatment. Moreover, it was shown that surfaces treated by both treatment procedures (HT and P) promoted the adhesion and proliferation of vascular endothelial cells, while at the same time inhibiting the adhesion and proliferation of vascular smooth muscle cells. The combination of both techniques presents a novel approach for the fabrication of vascular implants, with superior characteristics.
- Published
- 2021
- Full Text
- View/download PDF
25. Stability of Erythrocyte-Derived Nanovesicles Assessed by Light Scattering and Electron Microscopy
- Author
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Darja Božič, Matej Hočevar, Matic Kisovec, Manca Pajnič, Ljubiša Pađen, Marko Jeran, Apolonija Bedina Zavec, Marjetka Podobnik, Ksenija Kogej, Aleš Iglič, and Veronika Kralj-Iglič
- Subjects
light scattering ,vesicle characterization ,vesicle stability ,extracellular vesicle reference material ,nanovesicles ,cellular vesicles ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Extracellular vesicles (EVs) are gaining increasing amounts of attention due to their potential use in diagnostics and therapy, but the poor reproducibility of the studies that have been conducted on these structures hinders their breakthrough into routine practice. We believe that a better understanding of EVs stability and methods to control their integrity are the key to resolving this issue. In this work, erythrocyte EVs (hbEVs) were isolated by centrifugation from suspensions of human erythrocytes that had been aged in vitro. The isolate was characterised by scanning (SEM) and cryo-transmission electron microscopy (cryo-TEM), flow cytometry (FCM), dynamic/static light scattering (LS), protein electrophoresis, and UV-V spectrometry. The hbEVs were exposed to various conditions (pH (4–10), osmolarity (50–1000 mOsm/L), temperature (15–60 °C), and surfactant Triton X-100 (10–500 μM)). Their stability was evaluated by LS by considering the hydrodynamic radius (Rh), intensity of scattered light (I), and the shape parameter (ρ). The morphology of the hbEVs that had been stored in phosphate-buffered saline with citrate (PBS–citrate) at 4 °C remained consistent for more than 6 months. A change in the media properties (50–1000 mOsm/L, pH 4–10) had no significant effect on the Rh (=100–130 nm). At pH values below 6 and above 8, at temperatures above 45 °C, and in the presence of Triton X-100, hbEVs degradation was indicated by a decrease in I of more than 20%. Due to the simple preparation, homogeneous morphology, and stability of hbEVs under a wide range of conditions, they are considered to be a suitable option for EV reference material.
- Published
- 2021
- Full Text
- View/download PDF
26. The Effect of the Osmotically Active Compound Concentration Difference on the Passive Water and Proton Fluxes across a Lipid Bilayer
- Author
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Magdalena Przybyło, Dominik Drabik, Joanna Doskocz, Aleš Iglič, and Marek Langner
- Subjects
lipid bilayer ,water transport ,proton transport ,water activity ,membrane mechanics ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The molecular details of the passive water flux across the hydrophobic membrane interior are still a matter of debate. One of the postulated mechanisms is the spontaneous, water-filled pore opening, which facilitates the hydrophilic connection between aqueous phases separated by the membrane. In the paper, we provide experimental evidence showing that the spontaneous lipid pore formation correlates with the membrane mechanics; hence, it depends on the composition of the lipid bilayer and the concentration of the osmotically active compound. Using liposomes as an experimental membrane model, osmotically induced water efflux was measured with the stopped-flow technique. Shapes of kinetic curves obtained at low osmotic pressure differences are interpreted in terms of two events: the lipid pore opening and water flow across the aqueous channel. The biological significance of the dependence of the lipid pore formation on the concentration difference of an osmotically active compound was illustrated by the demonstration that osmotically driven water flow can be accompanied by the dissipation of the pH gradient. The application of the Helfrich model to describe the probability of lipid pore opening was validated by demonstrating that the probability of pore opening correlates with the membrane bending rigidity. The correlation was determined by experimentally derived bending rigidity coefficients and probabilities of lipid pores opening.
- Published
- 2021
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- View/download PDF
27. On the Role of Electrostatic Repulsion in Topological Defect-Driven Membrane Fission
- Author
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Ekaterina Gongadze, Luka Mesarec, Samo Kralj, Veronika Kralj-Iglič, and Aleš Iglič
- Subjects
fission of vesicles ,electric double layer ,osmotic pressure ,orientational ordering of water dipoles ,topological defects ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
Within a modified Langevin Poisson–Boltzmann model of electric double layers, we derived an analytical expression for osmotic pressure between two charged surfaces. The orientational ordering of the water dipoles as well as the space dependencies of electric potentials, electric fields, and osmotic pressure between two charged spheres were taken into account in the model. Thus, we were able to capture the interaction between the parent cell and connected daughter vesicle or the interactions between neighbouring beads in necklace-like membrane protrusions. The predicted repulsion between them can facilitate the topological antidefect-driven fission of membrane daughter vesicles and the fission of beads of undulated membrane protrusions.
- Published
- 2021
- Full Text
- View/download PDF
28. Mechanical and Electrical Interaction of Biological Membranes with Nanoparticles and Nanostructured Surfaces
- Author
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Jeel Raval, Ekaterina Gongadze, Metka Benčina, Ita Junkar, Niharika Rawat, Luka Mesarec, Veronika Kralj-Iglič, Wojciech Góźdź, and Aleš Iglič
- Subjects
lipid bilayer electrostatics ,zwitterionic lipid bilayers ,electric double layer ,osmotic pressure ,orientational degree of freedom of lipid headgroups ,orientational ordering of water dipoles ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
In this review paper, we theoretically explain the origin of electrostatic interactions between lipid bilayers and charged solid surfaces using a statistical mechanics approach, where the orientational degree of freedom of lipid head groups and the orientational ordering of the water dipoles are considered. Within the modified Langevin Poisson–Boltzmann model of an electric double layer, we derived an analytical expression for the osmotic pressure between the planar zwitterionic lipid bilayer and charged solid planar surface. We also show that the electrostatic interaction between the zwitterionic lipid head groups of the proximal leaflet and the negatively charged solid surface is accompanied with a more perpendicular average orientation of the lipid head-groups. We further highlight the important role of the surfaces’ nanostructured topography in their interactions with biological material. As an example of nanostructured surfaces, we describe the synthesis of TiO2 nanotubular and octahedral surfaces by using the electrochemical anodization method and hydrothermal method, respectively. The physical and chemical properties of these nanostructured surfaces are described in order to elucidate the influence of the surface topography and other physical properties on the behavior of human cells adhered to TiO2 nanostructured surfaces. In the last part of the paper, we theoretically explain the interplay of elastic and adhesive contributions to the adsorption of lipid vesicles on the solid surfaces. We show the numerically predicted shapes of adhered lipid vesicles corresponding to the minimum of the membrane free energy to describe the influence of the vesicle size, bending modulus, and adhesion strength on the adhesion of lipid vesicles on solid charged surfaces.
- Published
- 2021
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- View/download PDF
29. The Elucidation of the Molecular Mechanism of the Extrusion Process
- Author
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Joanna Doskocz, Paulina Dałek, Magdalena Przybyło, Barbara Trzebicka, Aleksander Foryś, Anastasiia Kobyliukh, Aleš Iglič, and Marek Langner
- Subjects
liposomes ,extrusion ,lipid bilayer ,membrane mechanics ,bending rigidity ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
Extrusion is a popular method for producing homogenous population of unilamellar liposomes. The technique relies on forcing a lipid suspension through cylindrical pores in a polycarbonate membrane. The quantification of the extrusion and/or recalibration processes make possible the acquisition of experimental data, which can be correlated with the mechanical properties of the lipid bilayer. In this work, the force needed for the extrusion process was correlated with the mechanical properties of a lipid bilayer derived from other experiments. Measurements were performed using a home-made dedicated device capable of maintaining a stable volumetric flux of a liposome suspension through well-defined pores and to continuously measure the extrusion force. Based on the obtained results, the correlation between the lipid bilayer bending rigidity and extrusion force was derived. Specifically, it was found that the bending rigidity of liposomes formed from well-defined lipid mixtures agrees with data obtained by others using flicker-noise spectroscopy or micromanipulation. The other issue addressed in the presented studies was the identification of molecular mechanisms leading to the formation of unilamellar vesicles in the extrusion process. Finally, it was demonstrated that during the extrusion, lipids are not exchanged between vesicles, i.e., vesicles can divide but no membrane fusion or lipid exchange between bilayers was detected.
- Published
- 2021
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- View/download PDF
30. Cell confinement reveals a branched-actin independent circuit for neutrophil polarity.
- Author
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Brian R Graziano, Jason P Town, Ewa Sitarska, Tamas L Nagy, Miha Fošnarič, Samo Penič, Aleš Iglič, Veronika Kralj-Iglič, Nir S Gov, Alba Diz-Muñoz, and Orion D Weiner
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Migratory cells use distinct motility modes to navigate different microenvironments, but it is unclear whether these modes rely on the same core set of polarity components. To investigate this, we disrupted actin-related protein 2/3 (Arp2/3) and the WASP-family verprolin homologous protein (WAVE) complex, which assemble branched actin networks that are essential for neutrophil polarity and motility in standard adherent conditions. Surprisingly, confinement rescues polarity and movement of neutrophils lacking these components, revealing a processive bleb-based protrusion program that is mechanistically distinct from the branched actin-based protrusion program but shares some of the same core components and underlying molecular logic. We further find that the restriction of protrusion growth to one site does not always respond to membrane tension directly, as previously thought, but may rely on closely linked properties such as local membrane curvature. Our work reveals a hidden circuit for neutrophil polarity and indicates that cells have distinct molecular mechanisms for polarization that dominate in different microenvironments.
- Published
- 2019
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31. Curvature Potential Unveiled Topological Defect Attractors
- Author
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Luka Mesarec, Aleš Iglič, Veronika Kralj-Iglič, Wojciech Góźdź, Epifanio G. Virga, and Samo Kralj
- Subjects
topological defects ,nematic liquid crystals ,nematic shells ,geometric potentials ,curvature ,Crystallography ,QD901-999 - Abstract
We consider the theoretical and positional assembling of topological defects (TDs) in effectively two-dimensional nematic liquid crystal films. We use a phenomenological Helfrich–Landau–de Gennes-type mesoscopic model in which geometric shapes and nematic orientational order are expressed in terms of a curvature tensor field and a nematic tensor order parameter field. Extrinsic, intrinsic, and total curvature potentials are introduced using the parallel transport concept. These potentials reveal curvature seeded TD attractors. To test ground configurations, we used axially symmetric nematic films exhibiting spherical topology.
- Published
- 2021
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32. On the Role of Curved Membrane Nanodomains and Passive and Active Skeleton Forces in the Determination of Cell Shape and Membrane Budding
- Author
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Luka Mesarec, Mitja Drab, Samo Penič, Veronika Kralj-Iglič, and Aleš Iglič
- Subjects
cytoskeleton ,membrane skeleton ,cell shape ,orientational ordering ,actin filaments ,active force ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Biological membranes are composed of isotropic and anisotropic curved nanodomains. Anisotropic membrane components, such as Bin/Amphiphysin/Rvs (BAR) superfamily protein domains, could trigger/facilitate the growth of membrane tubular protrusions, while isotropic curved nanodomains may induce undulated (necklace-like) membrane protrusions. We review the role of isotropic and anisotropic membrane nanodomains in stability of tubular and undulated membrane structures generated or stabilized by cyto- or membrane-skeleton. We also describe the theory of spontaneous self-assembly of isotropic curved membrane nanodomains and derive the critical concentration above which the spontaneous necklace-like membrane protrusion growth is favorable. We show that the actin cytoskeleton growth inside the vesicle or cell can change its equilibrium shape, induce higher degree of segregation of membrane nanodomains or even alter the average orientation angle of anisotropic nanodomains such as BAR domains. These effects may indicate whether the actin cytoskeleton role is only to stabilize membrane protrusions or to generate them by stretching the vesicle membrane. Furthermore, we demonstrate that by taking into account the in-plane orientational ordering of anisotropic membrane nanodomains, direct interactions between them and the extrinsic (deviatoric) curvature elasticity, it is possible to explain the experimentally observed stability of oblate (discocyte) shapes of red blood cells in a broad interval of cell reduced volume. Finally, we present results of numerical calculations and Monte-Carlo simulations which indicate that the active forces of membrane skeleton and cytoskeleton applied to plasma membrane may considerably influence cell shape and membrane budding.
- Published
- 2021
- Full Text
- View/download PDF
33. Electric Double Layer and Orientational Ordering of Water Dipoles in Narrow Channels within a Modified Langevin Poisson-Boltzmann Model
- Author
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Mitja Drab, Ekaterina Gongadze, Veronika Kralj-Iglič, and Aleš Iglič
- Subjects
electric double layer ,orientational ordering of water dipoles ,Helmholtz free energy ,modified Langevin Poisson-Boltzmann model ,Science ,Astrophysics ,QB460-466 ,Physics ,QC1-999 - Abstract
The electric double layer (EDL) is an important phenomenon that arises in systems where a charged surface comes into contact with an electrolyte solution. In this work we describe the generalization of classic Poisson-Boltzmann (PB) theory for point-like ions by taking into account orientational ordering of water molecules. The modified Langevin Poisson-Boltzmann (LPB) model of EDL is derived by minimizing the corresponding Helmholtz free energy functional, which includes also orientational entropy contribution of water dipoles. The formation of EDL is important in many artificial and biological systems bound by a cylindrical geometry. We therefore numerically solve the modified LPB equation in cylindrical coordinates, determining the spatial dependencies of electric potential, relative permittivity and average orientations of water dipoles within charged tubes of different radii. Results show that for tubes of a large radius, macroscopic (net) volume charge density of coions and counterions is zero at the geometrical axis. This is attributed to effective electrolyte charge screening in the vicinity of the inner charged surface of the tube. For tubes of small radii, the screening region extends into the whole inner space of the tube, leading to non-zero net volume charge density and non-zero orientational ordering of water dipoles near the axis.
- Published
- 2020
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- View/download PDF
34. Crystallized TiO2 Nanosurfaces in Biomedical Applications
- Author
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Metka Benčina, Aleš Iglič, Miran Mozetič, and Ita Junkar
- Subjects
titanium oxide ,nanostructure ,crystalline phase ,biocompatibility ,surface modification ,Chemistry ,QD1-999 - Abstract
Crystallization alters the characteristics of TiO2 nanosurfaces, which consequently influences their bio-performance. In various biomedical applications, the anatase or rutile crystal phase is preferred over amorphous TiO2. The most common crystallization technique is annealing in a conventional furnace. Methods such as hydrothermal or room temperature crystallization, as well as plasma electrolytic oxidation (PEO) and other plasma-induced crystallization techniques, present more feasible and rapid alternatives for crystal phase initiation or transition between anatase and rutile phases. With oxygen plasma treatment, it is possible to achieve an anatase or rutile crystal phase in a few seconds, depending on the plasma conditions. This review article aims to address different crystallization techniques on nanostructured TiO2 surfaces and the influence of crystal phase on biological response. The emphasis is given to electrochemically anodized nanotube arrays and their interaction with the biological environment. A short overview of the most commonly employed medical devices made of titanium and its alloys is presented and discussed.
- Published
- 2020
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35. Strategies for Improving Antimicrobial Properties of Stainless Steel
- Author
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Matic Resnik, Metka Benčina, Eva Levičnik, Niharika Rawat, Aleš Iglič, and Ita Junkar
- Subjects
antibacterial ,stainless steel ,surface modification ,biocompatibility ,plasma ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
In this review, strategies for improving the antimicrobial properties of stainless steel (SS) are presented. The main focus given is to present current strategies for surface modification of SS, which alter surface characteristics in terms of surface chemistry, topography and wettability/surface charge, without influencing the bulk attributes of the material. As SS exhibits excellent mechanical properties and satisfactory biocompatibility, it is one of the most frequently used materials in medical applications. It is widely used as a material for fabricating orthopedic prosthesis, cardiovascular stents/valves and recently also for three dimensional (3D) printing of custom made implants. Despite its good mechanical properties, SS lacks desired biofunctionality, which makes it prone to bacterial adhesion and biofilm formation. Due to increased resistance of bacteria to antibiotics, it is imperative to achieve antibacterial properties of implants. Thus, many different approaches were proposed and are discussed herein. Emphasis is given on novel approaches based on treatment with highly reactive plasma, which may alter SS topography, chemistry and wettability under appropriate treatment conditions. This review aims to present and critically discuss different approaches and propose novel possibilities for surface modification of SS by using highly reactive gaseous plasma in order to obtain a desired biological response.
- Published
- 2020
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36. Bending Elasticity Modulus of Giant Vesicles Composed of Aeropyrum Pernix K1 Archaeal Lipid
- Author
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Julia Genova, Nataša Poklar Ulrih, Veronika Kralj-Iglič, Aleš Iglič, and Isak Bivas
- Subjects
giant vesicles ,Aeropyrum pernix K1 ,archaeal lipids ,membrane bending elasticity ,membrane bending elasticity modulus ,phospholipid bilayer ,flickering ,cell shapes ,Science - Abstract
Thermally induced shape fluctuations were used to study elastic properties of giant vesicles composed of archaeal lipids C25,25-archetidyl (glucosyl) inositol and C25,25-archetidylinositol isolated from lyophilised Aeropyrum pernix K1 cells. Giant vesicles were created by electroformation in pure water environment. Stroboscopic illumination using a xenon flash lamp was implemented to remove the blur effect due to the finite integration time of the camera and to obtain an instant picture of the fluctuating vesicle shape. The mean weighted value of the bending elasticity modulus kc of the archaeal membrane determined from the measurements meeting the entire set of qualification criteria was (1.89 ± 0.18) × 10−19 J, which is similar to the values obtained for a membrane composed of the eukaryotic phospholipids SOPC (1.88 ± 0.17) × 10−19 J and POPC (2.00 ± 0.21) ´ 10−19 J. We conclude that membranes composed of archaeal lipids isolated from Aeropyrum pernix K1 cells have similar elastic properties as membranes composed of eukaryotic lipids. This fact, together with the importance of the elastic properties for the normal circulation through blood system, provides further evidence in favor of expectations that archaeal lipids could be appropriate for the design of drug delivery systems.
- Published
- 2015
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- View/download PDF
37. Inception Mechanisms of Tunneling Nanotubes
- Author
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Mitja Drab, David Stopar, Veronika Kralj-Iglič, and Aleš Iglič
- Subjects
tunneling nanotubes ,filopodia ,anisotropic membrane domains ,cytoskeletal forces ,f-actin ,Cytology ,QH573-671 - Abstract
Tunneling nanotubes (TNTs) are thin membranous tubes that interconnect cells, representing a novel route of cell-to-cell communication and spreading of pathogens. TNTs form between many cell types, yet their inception mechanisms remain elusive. We review in this study general concepts related to the formation and stability of membranous tubular structures with a focus on a deviatoric elasticity model of membrane nanodomains. We review experimental evidence that tubular structures initiate from local membrane bending facilitated by laterally distributed proteins or anisotropic membrane nanodomains. We further discuss the numerical results of several theoretical and simulation models of nanodomain segregation suggesting the mechanisms of TNT inception and stability. We discuss the coupling of nanodomain segregation with the action of protruding cytoskeletal forces, which are mostly provided in eukaryotic cells by the polymerization of f-actin, and review recent inception mechanisms of TNTs in relation to motor proteins.
- Published
- 2019
- Full Text
- View/download PDF
38. Plasma-Induced Crystallization of TiO2 Nanotubes
- Author
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Metka Benčina, Ita Junkar, Rok Zaplotnik, Matjaz Valant, Aleš Iglič, and Miran Mozetič
- Subjects
TiO2 nanotubes ,crystallization ,gaseous plasma ,biological response ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
Facile crystallization of titanium oxide (TiO2) nanotubes (NTs), synthesized by electrochemical anodization, with low pressure non-thermal oxygen plasma is reported. The influence of plasma processing conditions on TiO2 NTs crystal structure and morphology was examined by X-ray diffraction (XRD) and scanning electron microscopy (SEM). For the first time we report the transition of amorphous TiO2 NTs to anatase and rutile crystal structures upon treatment with highly reactive oxygen plasma. This crystallization process has a strong advantage over the conventional heat treatments as it enables rapid crystallization of the surface. Thus the crystalline structure of NTs is obtained in a few seconds of treatment and it does not disrupt the NTs’ morphology. Such a crystallization approach is especially suitable for medical applications in which stable crystallized nanotubular morphology is desired. The last part of the study thus deals with in vitro biological response of whole blood to the TiO2 NTs. The results indicate that application of such surfaces for blood connecting devices is prospective, as practically no platelet adhesion or activation on crystallized TiO2 NTs surfaces was observed.
- Published
- 2019
- Full Text
- View/download PDF
39. Interaction between Dipolar Lipid Headgroups and Charged Nanoparticles Mediated by Water Dipoles and Ions
- Author
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Aleš Iglič, Nataša Poklar Ulrih, Kristina Eleršič, Šarka Perutkova, Veronika Kralj-Iglič, Mukta Kulkarni, Aljaž Velikonja, Ekaterina Gongadze, and Poornima Budime Santhosh
- Subjects
charged nanoparticles ,lipids ,osmotic pressure ,dipolar zwitterionicheadgroups ,relative permittivity of water ,orientational ordering ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
In this work, a theoretical model describing the interaction between a positivelyor negatively charged nanoparticle and neutral zwitterionic lipid bilayers is presented. It isshown that in the close vicinity of the positively charged nanoparticle, the zwitterionic lipidheadgroups are less extended in the direction perpendicular to the membrane surface, whilein the vicinity of the negatively charged nanoparticle, the headgroups are more extended.This result coincides with the calculated increase in the osmotic pressure between the zwitterionic lipid surface and positively charged nanoparticle and the decrease of osmoticpressure between the zwitterionic lipid surface and the negatively charged nanoparticle.Our theoretical predictions agree well with the experimentally determined fluidity of alipid bilayer membrane in contact with positively or negatively charged nanoparticles. Theprospective significance of the present work is mainly to contribute to better understandingof the interactions of charged nanoparticles with a zwitterionic lipid bilayer, which may beimportant in the efficient design of the lipid/nanoparticle nanostructures (like liposomes withencapsulated nanoparticles), which have diverse biomedical applications, including targetedtherapy (drug delivery) and imaging of cancer cells.
- Published
- 2013
- Full Text
- View/download PDF
40. Monovalent Ions and Water Dipoles in Contact with Dipolar Zwitterionic Lipid Headgroups-Theory and MD Simulations
- Author
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Aljaž Velikonja, Šarka Perutkova, Ekaterina Gongadze, Peter Kramar, Aleš Iglič, Alenka Maček-Lebar, and Andraž Polak
- Subjects
lipids ,dipolar zwitterionic headgroups ,relative permittivity ,orientational ordering ,water molecules ,planar lipid bilayers ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The lipid bilayer is a basic building block of biological membranes and can be pictured as a barrier separating two compartments filled with electrolyte solution. Artificial planar lipid bilayers are therefore commonly used as model systems to study the physical and electrical properties of the cell membranes in contact with electrolyte solution. Among them the glycerol-based polar phospholipids which have dipolar, but electrically neutral head groups, are most frequently used in formation of artificial lipid bilayers. In this work the electrical properties of the lipid layer composed of zwitterionic lipids with non-zero dipole moments are studied theoretically. In the model, the zwitterionic lipid bilayer is assumed to be in contact with aqueous solution of monovalent salt ions. The orientational ordering of water, resulting in spatial variation of permittivity, is explicitly taken into account. It is shown that due to saturation effect in orientational ordering of water dipoles the relative permittivity in the zwitterionic headgroup region is decreased, while the corresponding electric potential becomes strongly negative. Some of the predictions of the presented mean-field theoretical consideration are critically evaluated using the results of molecular dynamics (MD) simulation.
- Published
- 2013
- Full Text
- View/download PDF
41. Ana Jenko Šterba-Böhm (1885-1936), prva Slovenka z doktoratom iz kemije
- Author
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Iztok Petrič, Jakub Jareš, and Aleš Iglič
- Subjects
zgodovina kemijskih ved ,prve Slovenke z doktoratom znanosti ,Chemistry ,QD1-999 - Abstract
V članku na kratko opišemo družinsko ozadje, življensko usodo ter argumente v prid trditvi, da je bila dr. Ana Jenko, poročena Šterba-Böhm, prva Slovenka, ki je doktorirala iz kemije in verjetno iz naravoslovja na sploh.
- Published
- 2015
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42. Curvature-Controlled Topological Defects
- Author
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Luka Mesarec, Pavlo Kurioz, Aleš Iglič, Wojciech Góźdź, and Samo Kralj
- Subjects
topological defects ,Gaussian curvature ,self-assembling ,crystal growth nucleation ,Crystallography ,QD901-999 - Abstract
Effectively, two-dimensional (2D) closed films exhibiting in-plane orientational ordering (ordered shells) might be instrumental for the realization of scaled crystals. In them, ordered shells are expected to play the role of atoms. Furthermore, topological defects (TDs) within them would determine their valence. Namely, bonding among shells within an isotropic liquid matrix could be established via appropriate nano-binders (i.e., linkers) which tend to be attached to the cores of TDs exploiting the defect core replacement mechanism. Consequently, by varying configurations of TDs one could nucleate growth of scaled crystals displaying different symmetries. For this purpose, it is of interest to develop a simple and robust mechanism via which one could control the position and number of TDs in such atoms. In this paper, we use a minimal mesoscopic model, where variational parameters are the 2D curvature tensor and the 2D orientational tensor order parameter. We demonstrate numerically the efficiency of the effective topological defect cancellation mechanism to predict positional assembling of TDs in ordered films characterized by spatially nonhomogeneous Gaussian curvature. Furthermore, we show how one could efficiently switch among qualitatively different structures by using a relative volume v of ordered shells, which represents a relatively simple naturally accessible control parameter.
- Published
- 2017
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43. Numerical Study of Membrane Configurations
- Author
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Luka Mesarec, Miha Fošnarič, Samo Penič, Veronika Kralj Iglič, Samo Kralj, Wojciech Góźdź, and Aleš Iglič
- Subjects
Physics ,QC1-999 - Abstract
We studied biological membranes of spherical topology within the framework of the spontaneous curvature model. Both Monte Carlo simulations and the numerical minimization of the curvature energy were used to obtain the shapes of the vesicles. The shapes of the vesicles and their energy were calculated for different values of the reduced volume. The vesicles which exhibit in-plane ordering were also studied. Minimal models have been developed in order to study the orientational ordering in colloids coated with a thin sheet of nematic liquid crystal (nematic shells). The topological defects are always present on the surfaces with the topology of a sphere. The location of the topological defects depends strongly on the curvature of the surface. We studied the nematic ordering and the formation of topological defects on vesicles obtained by the minimization of the spontaneous curvature energy.
- Published
- 2014
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44. Lipid vesicle shape analysis from populations using light video microscopy and computer vision.
- Author
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Jernej Zupanc, Barbara Drašler, Sabina Boljte, Veronika Kralj-Iglič, Aleš Iglič, Deniz Erdogmus, and Damjana Drobne
- Subjects
Medicine ,Science - Abstract
We present a method for giant lipid vesicle shape analysis that combines manually guided large-scale video microscopy and computer vision algorithms to enable analyzing vesicle populations. The method retains the benefits of light microscopy and enables non-destructive analysis of vesicles from suspensions containing up to several thousands of lipid vesicles (1-50 µm in diameter). For each sample, image analysis was employed to extract data on vesicle quantity and size distributions of their projected diameters and isoperimetric quotients (measure of contour roundness). This process enables a comparison of samples from the same population over time, or the comparison of a treated population to a control. Although vesicles in suspensions are heterogeneous in sizes and shapes and have distinctively non-homogeneous distribution throughout the suspension, this method allows for the capture and analysis of repeatable vesicle samples that are representative of the population inspected.
- Published
- 2014
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- View/download PDF
45. On the role of anisotropy of membrane components in formation and stabilization of tubular structures in multicomponent membranes.
- Author
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Nataliya Bobrovska, Wojciech Góźdź, Veronika Kralj-Iglič, and Aleš Iglič
- Subjects
Medicine ,Science - Abstract
Influence of isotropic and anisotropic properties of membrane constituents (nanodomains) on formation of tubular membrane structures in two-component vesicle is numerically investigated by minimization of the free energy functional based on the deviatoric-elasticity model of the membrane. It is shown that the lateral redistribution and segregation of membrane components may induce substantial change in membrane curvature resulting in the growth of highly curved tubular structures.
- Published
- 2013
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- View/download PDF
46. Erratum to 'Fusion Pore Diameter Regulation by Cations Modulating Local Membrane Anisotropy'
- Author
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Doron Kabaso, Ana I. Calejo, Jernej Jorgačevski, Marko Kreft, Robert Zorec, and Aleš Iglič
- Subjects
Technology ,Medicine ,Science - Published
- 2012
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47. Determination of the Strength of Adhesion between Lipid Vesicles
- Author
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Tomáš Mareš, Matej Daniel, Aleš Iglič, Veronika Kralj-Iglič, and Miha Fošnarič
- Subjects
Technology ,Medicine ,Science - Abstract
A commonly used method to determine the strength of adhesion between adhering lipid vesicles is measuring their effective contact angle from experimental images. The aim of this paper is to estimate the interobserver variations in vesicles effective contact angle measurements and to propose a new method for estimating the strength of membrane vesicle adhesion. Theoretical model shows for the old and for the new measure a monotonic dependence on the strength of adhesion. Results obtained by both measuring techniques show statistically significant correlation and high interobserver reliability for both methods. Therefore the conventional method of measuring the effective contact angle gives qualitatively relevant results as the measure of the lipid vesicle adhesion. However, the new measuring technique provides a lower variation of the measured values than the conventional measures using the effective contact angle. Moreover, obtaining the adhesion angle can be automatized more easily than obtaining the effective contact angle.
- Published
- 2012
- Full Text
- View/download PDF
48. Fusion Pore Diameter Regulation by Cations Modulating Local Membrane Anisotropy
- Author
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Doron Kabaso, Ana I. Calejo, Jernej Jorgačevski, Marko Kreft, Robert Zorec, and Aleš Iglič
- Subjects
Technology ,Medicine ,Science - Abstract
The fusion pore is an aqueous channel that is formed upon the fusion of the vesicle membrane with the plasma membrane. Once the pore is open, it may close again (transient fusion) or widen completely (full fusion) to permit vesicle cargo discharge. While repetitive transient fusion pore openings of the vesicle with the plasma membrane have been observed in the absence of stimulation, their frequency can be further increased using a cAMP-increasing agent that drives the opening of nonspecific cation channels. Our model hypothesis is that the openings and closings of the fusion pore are driven by changes in the local concentration of cations in the connected vesicle. The proposed mechanism of fusion pore dynamics is considered as follows: when the fusion pore is closed or is extremely narrow, the accumulation of cations in the vesicle (increased cation concentration) likely leads to lipid demixing at the fusion pore. This process may affect local membrane anisotropy, which reduces the spontaneous curvature and thus leads to the opening of the fusion pore. Based on the theory of membrane elasticity, we used a continuum model to explain the rhythmic opening and closing of the fusion pore.
- Published
- 2012
- Full Text
- View/download PDF
49. Stable Assemblies of Topological Defects in Nematic Orientational Order
- Author
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Arbresha Hölbl, Luka Mesarec, Juš Polanšek, Aleš Iglič, and Samo Kralj
- Subjects
General Chemical Engineering ,General Chemistry - Published
- 2022
50. A minimal physical model for curvotaxis driven by curved protein complexes at the cell's leading edge
- Author
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Raj Kumar Sadhu, Marine Luciano, Wang Xi, Cristina Martinez-Torres, Marcel Schröder, Christoph Blum, Marco Tarantola, Samo Penič, Aleš Iglič, Carsten Beta, Oliver Steinbock, Eberhard Bodenschatz, Benoît Ladoux, Sylvain Gabriele, and Nir S. Gov
- Subjects
Biological Physics (physics.bio-ph) ,FOS: Biological sciences ,Cell Behavior (q-bio.CB) ,Soft Condensed Matter (cond-mat.soft) ,FOS: Physical sciences ,Quantitative Biology - Cell Behavior ,Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter - Abstract
Cells often migrate on curved surfaces inside the body, such as curved tissues, blood vessels or highly curved protrusions of other cells. Recentin-vitroexperiments provide clear evidence that motile cells are affected by the curvature of the substrate on which they migrate, preferring certain curvatures to others, termed “curvotaxis”. The origin and underlying mechanism that gives rise to this curvature sensitivity are not well understood. Here, we employ a “minimal cell” model which is composed of a vesicle that contains curved membrane protein complexes, that exert protrusive forces on the membrane (representing the pressure due to actin polymerization). This minimal-cell model gives rise to spontaneous emergence of a motile phenotype, driven by a lamellipodia-like leading edge. By systematically screening the behaviour of this model on different types of curved substrates (sinusoidal, cylinder and tube), we show that minimal ingredients and energy terms capture the experimental data. The model recovers the observed migration on the sinusoidal substrate, where cells move along the grooves (minima), while avoiding motion along the ridges. In addition, the model predicts the tendency of cells to migrate circumferentially on convex substrates and axially on concave ones. Both of these predictions are verified experimentally, on several cell types. Altogether, our results identify the minimization of membrane-substrate adhesion energy and binding energy between the membrane protein complexes as key players of curvotaxis in cell migration.
- Published
- 2023
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